ANNOTATEDGAPS.PL
Description
This script gathers information about the intron/exon boundaries of the proteins in the PlasmoDB Annotated Database.
Each row contains the Accession Number of the protein, a 0 or 1
indicating whether or not the sequence is complemented, a 0 or 1
indicating whether or not the sequence contains more than one exon, and
finally two additional columns containing the global start and end
coordinates of the exon. All exons are listed in the order in
which they are spliced into the protein.
Arguments
Notes
Usage:
$./makePfa3D7_AnnotatedGaps.pl Pfa3D7_WholeGenome_Annotated_CDS_2005.2.11.fasta
Output:
*This file is used by the graphHits.R
script and must be located in the same directory as the R script when
said script is being run.
|
