Frazee AC, Langmead B, and Leek JT (2011). "ReCount: A multi-experiment resource of analysis-ready RNA-seq gene count datasets." BMC Bioinformatics 12:449. {corresponding website}
under revision:Frazee AC, Sabunciyan S, Hansen KD, Irizarry RA, and Leek JT (2013). "Differential expression analysis of RNA-seq data at base-pair resolution." Biostatistics.
in preparation:Frazee AC, Leek JT, et al. "Statistical methods for testing differential transcript expression."