### Software by type:

Bayesian/WinBUGS/MCMC Multilevel Functional Functional regression Penalized splines Image replication studies Matrix decompositions Interactive 3D and 4D brain imaging

- Bayesian/WinBUGS/MCMC
- Bayesian Analysis for Penalized Spline Regression using WinBUGS, JSS, 14(14), 2005 technical report, software
- Bayesian Functional Data Analysis using WinBUGS JSS, 32(11), 2009 technical report, software

- Functional data
- Functional regression
- Penalized functional regression, JCGS, pfr function in the refund package
- Longitudinal penalized functional regression paper, lpfr function in the refund package

- Penalized splines
- Exact for R/LRT of zero variance in LMMs, R/LRT null distribution MATLAB programs
- Exact for R/LRT of zero variance in LMMs, RLRsim (written by Fabian Scheipl) RLRsim R package
- Fast Adaptive Penalised Splines, JCGS 17(1), 1-20 technical report, R package

- Image replication studies
- I2C2 software for image replication, MATLAB and R code with Kirby21 ventricle replication example
- The image intra-class correlation coefficient (I2C2) for replication studies paper is now posted

- Matrix decompositions
- rTensor R package (maintainted by James Li) and containing an implementation of Population Value Decomposition (PVD)

- Interactive 3D and 4D brain imaging
- PhD student John Muschelli builds first interactive R plots for 3D and 4D brain imaging
- R package brainR

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