##############################
# FlexModule Parameter File  #
##############################

[Working Directory] = .
[FASTA Sequence] = sample.fa
[Output File] = samplemotif_m10l12
[Use *.cs?] (0:No; 1:Yes) = 0
[CS Prefix] = NULL
[CS Likelihood f] = cslike.txt
[Motif Number K] = 10 
[Mean Motif Length Lamda] = 12
[Maximal Motif Length Allowed] = 30 
[Init Motif Length L] = 12,12,12,12,12,12,12,12,12,12
[Init Motif Matrix]
NULL
NULL
NULL
NULL
NULL
NULL
NULL
NULL
NULL
NULL
[Init Motif Abundance] = freqpriorquality10.txt
[Init Module Size D] = 3.0
[Module Length] = 150
[Sample Module Length?] (0:No; 1:Yes) = 0
[Order of Background Markov Chain] = 3
[Use Fitted Background?] (0:No; 1:Yes) = 0
[Fitted Background Prefix] = NULL
[MCMC Iteration] = 5000