1. peak list (*.cod)
Column1: peak rank
Col2: chromosome
Col3: peak start
Col4: peak end
Col5: peak strand (currently all +)
Col6: peak length
Col7: minFDR = minimal false discovery rate for all W bp windows within the peak
Col8: minFDR_pos = the center of the W bp window in which minFDR is obtained
Col9: max|FC| = maximal |log2(fold change)| within a W bp window
Col10: max|FC|_pos = the center of the W bp window in which max|FC| is obtained
Col11: pos_read_num = number of ChIP reads within the peak
Col12: neg_read_num = number of control reads within the peak
Col13-22: information for 5' reads. Col13-18 are counterparts to col7-12. 
Col19: Fmaxpos_readnum = maximal number of 5' ChIP reads within a W bp window. 
Col20: Fmaxpos_readnum_pos = the center of the W bp window in which the Fmaxpos_readnum was obtained.
Col21: Fmaxneg_readnum = maximal number of 5' control reads within a W bp window. 
Col22: Fmaxneg_readnum_pos = the center of the W bp window in which the Fmaxneg_readnum was obtained.
Col23-32: information for 3' reads. They are counterparts to col13-22.
Col33: Rmode-Fmode = distance between the 5' and 3' peaks.
Col34: Delta = {2^min(5' max|FC|, 3' max|FC|)}/2^{max(5' max|FC|, 3' max|FC|)}
Col35: maxPosN = maximal number of ChIP reads within a W bp window.
Col36: maxPosN_pos = the center of the W bp window in which maxPosN was obtained. 
Col37: maxNegN = maximal number of control reads within a W bp window.
Col38: maxNegN_pos = the center of the W bp window in which maxNegN was obtained. 
 
2. peak signals ([your output file title].*.bar)
*.pos.bar = ChIP read counts in a W bp window. A sliding window with length W bp is used to scan genome at a step size S. S is specified by -s option in the hts_peakdetectorv2_2sample. Default S = 25 bp.
*.neg.bar = control read counts.
*_F.*.bar = read counts for 5' reads.
*_R.*.bar = read counts for 3' reads.
*.log2fc.bar = log2(ChIP/control) fold enrichment for a W bp window. A sliding window with length W bp is used to scan genome at a step size S.