### This is a sample configuration file
## if format line is missing by default program thinks the inputs are CEL files.
## If format is text, all signals (such as log ratios) should be put into
## a single tab delimited text file without column headers. The first two columns must be
## chromosome and probe locations. From the 3rd column and on are signals.
[data]
Title=agilent
Format=text
file=agilent_data.txt
WorkFolder=.

## the column number for conditions
[Condition]
Oct4=3
Sox2=5
Nanog=7

[peak finding]
candidateLength=2000
bumpLength=500 700 900 1100 1300 1500
maxGap=500
FDRcutoff=0.2
MinProbe=3
merge=100