Supplementary Material - SNP Annotation

Scharpf RB, Ting JC, Pevsner J, Ruczinski I (2007).
SNPchip: R Classes and Methods for SNP Array Data
Bioinformatics, 23(5): 627-8.

Download the SNP annotation files for various platforms (split by enzymes when applicable) as R dumps: [ 10K | 100K (Hind) | 100K (Xba) | 250K (Nsp I) | 250K (Sty I) ]

You can also download those files, for example the 10K annotation file, directly from the R prompt by typing

load(url("http://biostat.jhsph.edu/~iruczins/publications/sm/2007.scharpf.bioinfo/mapping/mapping10k.rda"))

at the R prompt. Replace 10k in the line above by 50kHind, 50kXba, 250kNsp, or 250kSty for the other files.


Questions? Mail Rob or Ingo