Software



beer
a bayesian approach for analyzing phage-immunoprecipitation sequencing data
crlmm
genotype calling and copy number analysis for affymetrix and illumina arrays
logic regression
constructing predictors as boolean combinations of binary covariates
mdts
detection of de novo deletion from targeted sequencing in trios
minimum distance
de novo copy number variants in trios from genotyping arrays
phi estimation
estimates and variability for kinetic parameters in denaturing experiments
phipdata
a container for phage-immunoprecipitation sequencing data
rosetta
computational modeling and prediction of protein structures
rvs
probabilities of related individuals sharing rare variants
snpchip
functionality for snp array data (deprecated)
trio
methods for genetic association studies in case-parent trios
vanillaice
copy number estimation from snp array data