Links and Supplements
Wikipedia
[
Markov Chain |
Hidden Markov model |
Monte Carlo |
Markov Chain Monte Carlo |
Metropolis-Hastings algorithm |
Gibbs sampling |
Greedy algorithm |
Simulated annealing |
Genetic algorithm |
Dynamic programming
]
Resources and Web Servers
[
Sali Lab |
MODELLER |
SWISS-MODEL |
VERIFY3D |
PROCHECK |
WHATIF |
PHYRE |
3D-PSSM |
UCLA DOE |
ROBETTA |
Rosetta@Home |
Folding@Home
]
Papers
Bonneau, Tsai, Ruczinski, Baker (2001)
Functional inferences from blind ab initio protein structure predictions.
Bonneau, Tsai, Ruczinski, Chivian, Rohl, Strauss, Baker (2001)
Rosetta in CASP4: progress in ab initio protein structure prediction.
Rost (1999)
Twilight zone of protein sequence alignments.
Simons, Kooperberg, Huang, Baker (1997)
Assembly of protein tertiary structures from fragments...
Simons, Ruczinski, Kooperberg, Fox, Bystroff, Baker (1999)
Improved recognition of native-like protein structures ...
Simons, Bonneau, Ruczinski, Baker (1999)
Ab initio protein structure prediction of CASP III targets using ROSETTA.