This R script takes the output from the
blast.pl script, a hash file containing query names and their respective chromosome numbers (
queryIndex) and a hash file containing hit names and their respective chromosome
numbers (
hitIndex). The script outputs one
PDF
which contains two columns of nodes, one for the query sequences, and
the other for the target sequences. Edges are drawn from each
query node to the nodes representing the hits that were generated by
blast.pl.
*These files must all be in the same directory as the R script.