hmChIP: a database and web server for exploring publicly available human and mouse ChIP-seq and ChIP-chip data

This is MHS Bioinformatics Capstone Project Webpage for Li Chen, who is a MHS Bioinformatics Candidate in the deparment of Biostatistics at the Johns Hopkins University's Bloomberg School of Public Health. The title of my Capstone Project is: "hmChIP: a database and web server for exploring publicly available human and mouse ChIP-seq and ChIP-chip data", which has now been a publication in Journal Bioinformatics[1]. The hmChIP software has been intergrated with CisGenome[2] in ChIP-chip and ChIP-seq analysis.

Dr. Hongkai Ji's Research Group

hmChIP

CisGenome

[1] Li Chen, George Wu, and Hongkai Ji (2011) hmChIP: a database and web server for exploring publicly available human and mouse ChIP-seq and ChIP-chip data. Bioinformatics, doi: 10.1093/bioinformatics/btr156

[2] Ji HK, Jiang H, Ma W, Johnson DS, Myers RM and Wong WH (2008) An integrated software system for analyzing ChIP-chip and ChIP-seq data. Nature Biotechnology. 26: 1293-1300.