Annotation packages are currently available for the following DNA methylation microarrays. If your array is not in the list you can build a package by following the directions for making a new array annotation package. Note that the charm package functions have been tested most extensively with the custom CHARM microarray.

  • Human 2.1M CHARM array (pd.feinberg.hg18.me.hx1)
  • Mouse 2.1M CHARM array (pd.feinberg.mm8.me.hx1)
  • Human 2.1M Deluxe Promoter Array (pd.081229.hg18.promoter.medip.hx1)
  • Mouse 385K RefSeq Promoter (pd.2006.07.18.mm8.refseq.promoter)
  • Rat 385K RefSeq Promoter (pd.2006.10.31.rn34.refseq.promoter)