Software
R packges
- CHARM: Microarray method for high-throughput measurement of DNA methylation (with Martin Aryee and Rafa Irizarry) [R package for CHARM]
Some potentially useful R functions
The following functions were considered sufficiently general to put up on this webpage with the hope that others find them helpful. They are licensed under the GNU General Public License version 3, or (at your option) any later version. Enjoy.
- Better summary() functions for lm, glm, gee, and geese objects
- Functions for global wald testing and estimation
- Stata's xtgraph function translated into R
- Functions to obtain power and sample size via simulation
- A function to fill in missing values
- Function for easy class conversion
- Adjusted, robust, or Bayesian sensitivity, specificity, and diagnostic accuracy estimates
- Boxplots stratified by the values of a second grouping variable
Please email me if you encounter any bugs.