CV | Prasad Patil

Prasad Patil

Contact Information

E-mail
prpatil42 || gmail || com

Address
615 N. Wolfe St., W3030
Baltimore, MD, 21205

Education

2011 - Present Ph.D Candidate
Department of Biostatistics, Johns Hopkins University
Adviser: Jeff Leek

2005-2008 B.A., Mathematics
Minor: Computer Science
New York University

Work Experience

2011 - Present Research Associate
Department of Biostatistics, Johns Hopkins University

2009 - 2011 Scientific Programmer/Bioinformatician
Center for Biomedical Informatics, Harvard University

2008 - 2009 Research Intern/Fellow
Partners Healthcare, Cambridge, MA

Publications

  1. Patil P, Bachant-Winner PO, Haibe-Kains B, Leek JT. (2015). Test set bias affects reproducibility of gene signatures. Bioinformatics, btv157.
  2. Hyland, PL, Burke, LS, Pfeiffer, RM, Rotunno M, Sun D, Patil P, Tucker MA, Goldstein AM, Yang XR (2014). Constitutional promoter methylation and risk of familial melanoma. Epigenetics, 9(5), 0-1.
  3. Fusaro, VA, Patil P, Chi CL, Contant CF, Tonellato PJ. (2013). A Systems Approach to Designing Effective Clinical Trials Using Simulations. Circulation, 127(4), 517-526.
  4. Fusaro VA, Patil P, Gafni E, Wall DP, Tonellato PJ. (2011) Biomedical Cloud Computing Using Amazon Web Services. PLoS Comput. Biol., e1002147.
  5. Wall DP, Kudtarkar P, Fusaro VA, Pivovarov R, Patil P, Tonellato PJ. (2010) Cloud computing for comparative genomics. BMC Bioinf., 11:259.

Presentations & Conference Papers

  1. Patil P*, Leek JT. Assessing the reproducibility of gene signatures. ENAR, Miami, FL.
  2. Patil P*, Haibe-Kains B, Leek JT. (2014) Cross-platform gene signature development. JSM, Boston, MA.
  3. Patil P*, Haibe-Kains B, Leek JT. (2014) Cross-platform gene signature development using Top-Scoring Pairs. ENAR, Baltimore, MD.
  4. Chi CL*, Fusaro VA, Patil P, Crawford MA, Contant CF, Tonellato PJ. (2010) An approach to optimal individualized warfarin treatment through clinical trial simulations. Proceedings of IEEE Cairo International Biomedical Engineering Conference (CIBEC.10), Cairo, Egypt.
  5. Chi, CL*, Patil P, Fusaro VA, Kos PJ, Pivovarov R, Contant CF, Tonellato PJ. (2010) Simulated Comparison of Warfarin Treatment Protocols. Proceedings of the 2010 American Medical Informatics Association Annual Symposium, Washington, DC.
  6. Chi CL*, Kos PJ, Fusaro VA, Pivovarov R, Patil P, Tonellato PJ. (2010) Mining personalized medicine algorithms with surrogate algorithm tags. Proceedings of the First ACM International Health Informatics Symposium, Arlington, VA.
  7. Patil P*, Heus H, Arnaout R, Tonellato PJ. (2010) Refining a method for processing an individual.s whole genome to clinical utility. CSHL Personal Genomes Meeting, Cold Spring Harbor, N.Y.
  8. Patil P*. (2009) Clinical algorithms for whole genome data. Partners Health Care Information Systems Research Council Symposium, Harvard Medical School, Boston, MA.
* - Speaker

Service & Activities

Referee Reports
Biometrics (2014)

Organizaton/Administration
Session chair (2014), "Next-generation Sequencing", ENAR, Baltimore, MD.

Organizer (2012), Biostatistics Computing Club

Teaching

Fall 2014 Lead TA: BIO622

Fall 2012-Spring 2014 TA: BIO611-612, BIO615, BIO621-624, AS.280.345 (Undergrad)

Awards

2008 NYU Honors Scholar

2006 - 2007 NYU Dean's List

2005 - 2008 National Merit Scholar

Software

github
healthvis