This is a repository of the software packages that I have written or am currently developing. R packages that are on Bioconductor can be installed using install.packages() on any R platform (Mac, Windows, Linux, etc.). Others will likely have to be installed from source. Please note that packages marked under "Development" can change at anytime and are not as stable as released versions.
Current packages
| Package | Description | Files/Download | Release Version | Development |
| SNPchip | Classes and methods for visualizing SNP-level data | available from Bioconductor | release | devel |
| VanillaICE | Hidden Markov model for identifying chromosomal alterations in high-throughput SNP arrays | available from Bioconductor | release | devel |
| XDE | Implementation of a Bayesian model for cross-study differential gene expression | available from Bioconductor | release | devel |
| crlmm | Genotyping (Benilton Carvalho) and copy number estimation for Affymetrix and Illumina platforms | available from Bioconductor | release | devel |
| genomewidesnp6Crlmm | Annotation support for the Affymetrix 6.0 platform | 1.0.4 |