I am a third-year PhD student in Department of Biostatistics and MSE student in Department of Computer Science at Johns Hopkins University. I work as a research assistance under the advisory of Dr. Hongkai Ji.
My primary research interest is developing novel statistical and machine learning methods for analyzing data from high-thoughput sequencing technologies, especially single-cell sequencing.
This website is developed by Zhicheng Ji. Last update: 10-15-2017.
Number of visits:
1. Statistical and Machine Learning Methods for Single-Cell Analysis:
TSCAN: Pseudo-Time Reconstruction and Evaluation in Single-Cell RNA-seq Analysis. [Paper][Software]
SCRAT: Single-Cell Regulome Analysis Tool. [Paper][Software]
2. Methods for Mining Big Genomics Data:
GSCA: Gene Set Context Analysis for Turning Publicly Available Gene Expression Data into Discoveries. [Paper][Software]
GEOsearch: Extendable Search Engine for Gene Expression Omnibus [Software]
All Publications on Google Scholar
| Name | Type | Author | Availability |
|---|---|---|---|
| GSCA: Gene Set Context Analysis | R Software Package | Zhicheng Ji, Hongkai Ji | [Github] [Bioconductor] [Online GUI] |
| TSCAN: Tools for Single-Cell ANalysis | R Software Package | Zhicheng Ji, Hongkai Ji | [Github] [Bioconductor] [Online GUI] |
| RMRCE: Regularized Maximum Rank Correlation Estimator | R Software Package | Fang Han, Hongkai Ji, Zhicheng Ji, Honglang Wang | [Github] |
| SEPA: Single-cell Gene Expression Pattern Analysis | R Software Package | Zhicheng Ji, Hongkai Ji | [Github] [Bioconductor] [Online GUI] |
| GEOsearch: Extendable Search Engine for GEO | R Software Package | Zhicheng Ji, Hongkai Ji | [Github] [Bioconductor] [Online GUI] |
| SCRAT: Single-Cell Regulome Analysis Tool | R Software Package | Zhicheng Ji, Weiqiang Zhou, Hongkai Ji | [Github] [Online GUI] |
| Reproducible Interactive Data Exploration Tool | Web Application | Zhicheng Ji, Hongkai Ji | [Online GUI] |
Office:
E3038 Department of Biostatistics
Bloomberg School of Public Health
615 North Wolfe Street
Baltimore, MD, 21205, USA
Email:
zji4@jhu.edu
Github:
https://github.com/zji90