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Briha Ansari | Karen Bandeen-Roche | Joshua Betz | Brian Caffo | Nilanjan Chatterjee | Gwendolyn Clemens | Elizabeth Colantuoni (Johnson) | Ciprian Crainiceanu| Frank Curriero | Abhirup Datta | Marie Diener-West | Constantine Frangakis | Adrian Gherman | Andre Hackman | Kasper Hansen | Stephanie Hicks | Hongkai Ji | Ximin Li | Martin Lindquist | Thomas Louis | Aidan McDermott |John McGready | John Muschelli | Akihiko Nishimura | Elizabeth Ogburn | | Chathurangi Pathiravasan | Roger Peng | Michael Rosenblum | Ingo Ruczinski | Ahmed Sabit | Patrick Sadil | Elizabeth Stuart | Elizabeth Sugar | Margaret Taub | Carol Thompson | Richard Thompson | James Tonascia | Jiangxia Wang | Mei-Cheng Wang | Gayane Yenokyan | Scott Zeger | Yifan Zhang | Ni Zhao | Weiqiang (Ken) Zhou | Vadim Zipunnikov

Karen Bandeen-Roche (go to top of document)

Crane BM, Bandeen-Roche K, Carlson MC: Exploring the relationship between engagement in enriching early-life activities during adolescence and cognition in later-life: results from the Health and Retirement Study. Res Aging 45(2):198-209, 2023.

Keita Fakeye MB, Samuel LJ, Drabo EF, Bandeen-Roche K, Wolff JL: Caregiving-related work productivity loss among employed family and other unpaid caregivers of older adults. Value Health 26(5):712-720, 2023.

Roth DL, Bentley JP, Mukaz DK, Haley WE, Walston JD, Bandeen-Roche K: Transitions to family caregiving and latent variables of systemic inflammation over time. Res Aging 45(2):173-184, 2023.

Thornton CP, Bandeen-Roche K, Dolinar M, Roberts Lavigne LC, George Lansey D, Jones R, Walston J, Varadhan R, Hladek M, Imus P: Clinical trial participation predicts improved survival in older adults receiving allogeneic blood and marrow transplant. BMC Geriatr 23(1):120, 2023.

Wanigatunga AA, Chiu V, Cai Y, Urbanek JK, Mitchell CM, Miller ER 3rd, Christenson RH, Rebuck H, Michos ED, Juraschek SP, Walston J, Xue QL, Bandeen-Roche K, Appel LJ, Schrack JA: Patterns of daily physical movement, chronic inflammation, and frailty incidence. Med Sci Sports Exerc 55(2):281-288, 2023.

Buta B, Zheng S, Langdon J, Adeosun B, Bandeen-Roche K, Walston J, Xue QL: Agreement between standard and self-reported assessments of physical frailty syndrome and its components in a registry of community-dwelling older adults. BMC Geriatr 22(1):705, 2022.

Clegg A, Bandeen-Roche K, Farrin A, Forster A, Gill TM, Gladman J, Kerse N, Lindley R, McManus RJ, Melis R, Mujica-Mota R, Raina P, Rockwood K, Teh R, van der Windt D, Witham M: New horizons in evidence-based care for older people: individual participant data meta-analysis. Age Ageing 51(4):afac090, 2022.

Freedman VA, Bandeen-Roche K, Cornman JC, Spillman BC, Kasper JD, Wolff JL: Incident care trajectories for older adults with and without dementia. J Gerontol B Psychol Sci Soc Sci 77(Supplement_1):S21-S30, 2022.

Gorski-Steiner I, Bandeen-Roche K, Volk HE, O'Dell S, Schwartz BS: The association of unconventional natural gas development with diagnosis and treatment of internalizing disorders among adolescents in Pennsylvania using electronic health records. Environ Res 212(Pt A):113167, 2022.

Gorski-Steiner I, O'Dell S, Bandeen-Roche K, Volk HE, Goes FS, Schwartz BS: Geographic disparities in new onset of internalizing disorders in Pennsylvania adolescents using electronic health records. Spat Spatiotemporal Epidemiol 41:100439, 2022.

Hirsch AG, Nordberg CM, Bandeen-Roche K, Pollak J, Poulsen MN, Moon KA, Schwartz BS: Urban-rural differences in health care utilization and COVID-19 outcomes in patients with type 2 diabetes. Prev Chronic Dis 19:E44, 2022.

Hladek M, Gill JM, Lai C, Bandeen-Roche K, Xue QL, Allen J, Leyden C, Kanefsky R, Szanton SL: High social coping self-efficacy associated with lower sweat interleukin-6 in older adults with chronic illness. J Appl Gerontol 41(2):581-589, 2022.

Hladek MD, Zhu J, Crews DC, McAdams-DeMarco MA, Buta B, Varadhan R, Shafi T, Walston JD, Bandeen-Roche K: Physical resilience phenotype trajectories in incident hemodialysis: characterization and mortality risk assessment. Kidney Int Rep 7(9):2006-2015, 2022.

Ijaz N, Buta B, Xue QL, Mohess DT, Bushan A, Tran H, Batchelor W, deFilippi CR, Walston JD, Bandeen-Roche K, Forman DE, Resar JR, O'Connor CM, Gerstenblith G, Damluji AA: Interventions for frailty among older adults with cardiovascular disease: JACC state-of-the-art review. J Am Coll Cardiol 79(5):482-503, 2022.

Ip EH, Chen SH, Rejeski WJ, Bandeen-Roche K, Hayden KM, Hugenschmidt CE, Pierce J, Miller ME, Speiser JL, Kritchevsky SB, Houston DK, Newton RL, Rapp SR, Kitzman DW: Gradient and acceleration of decline in physical and cognitive functions in older adults: a disparity analysis. J Gerontol A Biol Sci Med Sci 77(8):1603-1611, 2022.

LaFave SE, Bandeen-Roche K, Gee G, Thorpe RJ, Li Q, Crews D, Samuel L, Cooke A, Hladek M, Szanton SL: Quantifying older Black Americans' exposure to structural racial discrimination: how can we measure the water in which we swim? J Urban Health 99(5):794-802, 2022.

Laskow T, Zhu J, Buta B, Oni J, Sieber F, Bandeen-Roche K, Walston J, Franklin PD, Varadhan R: Risk factors for nonresilient outcomes in older adults after total knee replacement. J Gerontol A Biol Sci Med Sci 77(9):1915-1922, 2022.

LeCroy MN, Potter LN, Bandeen-Roche K, Bianco ME, Cappola AR, Carter EB, Dayan PS, Eckstrom E, Edwards DF, Farabi SS, Fisher SD, Giordano J, Hanson HA, Jenkins E, Juhn Y, Kaskel F, Stake CE, Reeds DN, Schleiss MR, Wafford QE, McColley SA: Barriers to and solutions for representative inclusion across the lifespan and in life course research: The need for structural competency highlighted by the COVID-19 pandemic. J Clin Transl Sci 7(1):e38, 2022.

Meeker MA, Schwartz BS, Bandeen-Roche K, Hirsch AG, De Silva SSA, McAlexander TP, Black NC, McClure LA: Assessing measurement invariance of a land use environment construct across levels of urbanicity. Geohealth 6(10):e2022GH000667, 2022.

Moored KD, Bandeen-Roche K, Snitz BE, DeKosky ST, Williamson JD, Fitzpatrick AL, Carlson MC: Risk of dementia differs across lifestyle engagement subgroups: a latent class and time-to-event analysis in community-dwelling older adults. J Gerontol B Psychol Sci Soc Sci 77(5):872-884, 2022.

Nichols E, Deal JA, Swenor BK, Abraham AG, Armstrong NM, Bandeen-Roche K, Carlson MC, Griswold M, Lin FR, Mosley TH, Ramulu PY, Reed NS, Sharrett AR, Gross AL: The effect of missing data and imputation on the detection of bias in cognitive testing using differential item functioning methods. BMC Med Res Methodol 22(1):81, 2022.

Nkimbeng M, Commodore-Mensah Y, Angel JL, Bandeen-Roche K, Thorpe RJ Jr, Han HR, Winch PJ, Szanton SL: Longer residence in the United States is associated with more physical function limitations in African immigrant older adults. J Appl Gerontol 41(2):411-420, 2022.

Palta P, Griswold M, Ranadive R, Bandeen-Roche K, Folsom AR, Petruski-Ivleva N, Burgard S, Kucharska-Newton A, Windham BG: Midlife cardiovascular health and robust versus frail late-life status: the Atherosclerosis Risk in Communities Study. J Gerontol A Biol Sci Med Sci 77(6):1222-1229, 2022.

Petrovsky Doan LN, Loizos M, O'Conor R, Prochaska M, Tsang M, Hopman-Droste R, Klinedinst TC, Mathur A, Bandeen-Roche K, van der Willik O, Kritchevsky SB: Key recommendations from the 2021 "inclusion of older adults in clinical research" workshop. J Clin Transl Sci 6(1):e55, 2022.

Schwartz BS, Kolak M, Pollak JS, Poulsen MN, Bandeen-Roche K, Moon KA, DeWalle J, Siegel KR, Mercado CI, Imperatore G, Hirsch AG: Associations of four indexes of social determinants of health and two community typologies with new onset type 2 diabetes across a diverse geography in Pennsylvania. PLoS One 17(9):e0274758, 2022.

Sezgin D, O'Donovan M, Woo J, Bandeen-Roche K, Liotta G, et al: Early identification of frailty: developing an international Delphi consensus on pre-frailty. Arch Gerontol Geriatr 99:104586, 2022.

Chan T, Wanigatunga AA, Terracciano A, Carlson MC, Bandeen-Roche K, Costa PT, Simonsick EM, Schrack JA: Traits and treadmills: Association between personality and perceived fatigability in well-functioning community-dwelling older adults. Psychol Aging 36(6):710-717, 2021.

Chu NM, Bandeen-Roche K, Xue QL, Carlson MC, Sharrett AR, Gross AL: Physical frailty phenotype criteria and their synergistic association on cognitive functioning. J Gerontol A Biol Sci Med Sci 76(9):1633-1642, 2021.

Chu NM, Xue QL, McAdams-DeMarco MA, Carlson MC, Bandeen-Roche K, Gross AL: Frailty-a risk factor of global and domain-specific cognitive decline among a nationally representative sample of community-dwelling older adult U.S. Medicare beneficiaries. Age Ageing 50(5):1569-1577, 2021.

Damluji AA, Chung SE, Xue QL, Hasan RK, Moscucci M, Forman DE, Bandeen-Roche K, Batchelor W, Walston JD, Resar JR, Gerstenblith G: Frailty and cardiovascular outcomes in the National Health and Aging Trends Study. Eur Heart J 42(37):3856-3865, 2021.

Damluji AA, Chung SE, Xue QL, Hasan RK, Walston JD, Forman DE, Bandeen-Roche K, Moscucci M, Batchelor W, Resar JR, Gerstenblith G: Physical frailty phenotype and the development of geriatric syndromes in older adults with coronary heart disease. Am J Med 134(5):662-671, 2021.

Darrow JA, Calabro A, Gannon S, Orusakwe A, Esquivel R, Traynham CJ, Rao A, Gulyani S, Khingelova K, Bandeen-Roche K, Albert M, Moghekar A: Effect of patient-specific preanalytic variables on CSF Aβ1-42 concentrations measured on an automated chemiluminescent platform. J Appl Lab Med 6(2):397-408, 2021.

Fried LP, Cohen AA, Xue QL, Walston J, Bandeen-Roche K, Varadhan R: The physical frailty syndrome as a transition from homeostatic symphony to cacophony. Nat Aging 1(1):36-46, 2021.

Garibaldi BT, Fiksel J, Muschelli J, Robinson ML, Rouhizadeh M, Perin J, Schumock G, Nagy P, Gray JH, Malapati H, Ghobadi-Krueger M, Niessen TM, Kim BS, Hill PM, Ahmed MS, Dobkin ED, Blanding R, Abele J, Woods B, Harkness K, Thiemann DR, Bowring MG, Shah AB, Wang MC, Bandeen-Roche K, Rosen A, Zeger SL, Gupta A: Patient trajectories among persons hospitalized for COVID-19 : a cohort study. Ann Intern Med 174(1):33-41, 2021.

Garibaldi BT, Wang K, Robinson ML, Zeger SL, Bandeen-Roche K, Wang MC, Alexander GC, Gupta A, Bollinger R, Xu Y: Comparison of time to clinical improvement with vs without remdesivir treatment in hospitalized patients with COVID-19. JAMA Netw Open 4(3):e213071, 2021.

Ghachem A, Fried LP, Legault V, Bandeen-Roche K, Presse N, Gaudreau P, Cohen AA: Evidence from two cohorts for the frailty syndrome as an emergent state of parallel dysregulation in multiple physiological systems. Biogerontology 22(1):63-79, 2021.

Griswold ME, Talluri R, Zhu X, Su D, Tingle J, Gottesman RF, Deal J, Rawlings AM, Mosley TH, Windham BG, Bandeen-Roche K: Reflection on modern methods: shared-parameter models for longitudinal studies with missing data. Int J Epidemiol 50(4):1384-1393, 2021.

Handing EP, Rapp SR, Chen SH, Rejeski WJ, Wiberg M, Bandeen-Roche K, Craft S, Kitzman D, Ip EH: Heterogeneity in association between cognitive function and gait speed among older adults: an integrative data analysis study. J Gerontol A Biol Sci Med Sci 76(4):710-715, 2021.

Hladek MD, Zhu J, Buta BJ, Szanton SL, Bandeen-Roche K, Walston JD, Xue QL: Self-efficacy proxy predicts frailty incidence over time in non-institutionalized older adults. J Am Geriatr Soc 69(12):3507-3518, 2021.

Huisingh-Scheetz M, Buta B, Bandeen-Roche K, Huang ES, Varadhan R, Walston J, Wroblewski K, Schumm LP, Waite LJ: 2015-2016 Normative Data for the 3-m usual walk, five repeated chair stands, and static balance components of the SPPB among U.S. older adults across two nationally representative data sets: NSHAP and NHATS. J Gerontol B Psychol Sci Soc Sci 76(Supplement_3):S299-S312, 2021.

Schwartz BS, Pollak J, Poulsen MN, Bandeen-Roche K, Moon K, DeWalle J, Siegel K, Mercado C, Imperatore G, Hirsch AG: Association of community types and features in a case-control analysis of new onset type 2 diabetes across a diverse geography in Pennsylvania. BMJ Open 11(1):e043528, 2021.

Scully EP, Schumock G, Fu M, Massaccesi G, Muschelli J, Betz J, Klein EY, West NE, Robinson M, Garibaldi BT, Bandeen-Roche K, Zeger S, Klein SL, Gupta A: Sex and gender differences in testing, hospital admission, clinical presentation, and drivers of severe outcomes from COVID-19. Open Forum Infect Dis 8(9):ofab448, 2021.

Sedhom R, Kuo PL, Gupta A, Smith TJ, Chino F, Carducci MA, Bandeen-Roche K: Changes in the place of death for older adults with cancer: Reason to celebrate or a risk for unintended disparities? J Geriatr Oncol 12(3):361-367, 2021.

Sutton W, Genberg B, Prescott JD, Segev DL, Zeiger MA, Bandeen-Roche K, Mathur A: Understanding surgical decision-making in older adults with differentiated thyroid cancer: a discrete choice experiment. Surgery 169(1):14-21, 2021.

Usher T, Buta B, Thorpe RJ, Huang J, Samuel LJ, Kasper JD, Bandeen-Roche K: Dissecting the racial/ethnic disparity in frailty in a nationally representative cohort study with respect to health, income, and measurement. J Gerontol A Biol Sci Med Sci 76(1):69-76, 2021.

Wongvibulsin S, Garibaldi BT, Antar AAR, Wen J, Wang MC, Gupta A, Bollinger R, Xu Y, Wang K, Betz JF, Muschelli J, Bandeen-Roche K, Zeger SL, Robinson ML: Development of Severe COVID-19 Adaptive Risk Predictor (SCARP), a calculator to predict severe disease or death in hospitalized patients with COVID-19. Ann Intern Med 174(6):777-785, 2021.

Xue QL, Bandeen-Roche K, Tian J, Kasper JD, Fried LP: Progression of physical frailty and the risk of all-cause mortality: is there a point of no return? J Am Geriatr Soc 69(4):908-915, 2021.

Bandeen-Roche K, Gross AL, Varadhan R, Buta B, Carlson MC, Huisingh-Scheetz M, Mcadams-Demarco M, Piggott DA, Brown TT, Hasan RK, Kalyani RR, Seplaki CL, Walston JD, Xue QL: Principles and issues for physical frailty measurement and its clinical application. J Gerontol A Biol Sci Med Sci 75(6):1107-1112, 2020.

Damluji AA, Rodriguez G, Noel T, Davis L, Dahya V, Tehrani B, Epps K, Sherwood M, Sarin E, Walston J, Bandeen-Roche K, Resar JR, Brown TT, Gerstenblith G, O'Connor CM, Batchelor W: Sarcopenia and health-related quality of life in older adults after transcatheter aortic valve replacement. Am Heart J 224:171-181, 2020.

Deal JA, Power MC, Palta P, Alonso A, Schneider ALC, Perryman K, Bandeen-Roche K, Sharrett AR: Relationship of cigarette smoking and time of quitting with incident dementia and cognitive decline. J Am Geriatr Soc 68(2):337-345, 2020.

Ge ML, Carlson MC, Bandeen-Roche K, Chu NM, Tian J, Kasper JD, Xue QL: U.S. national profile of older adults with cognitive impairment alone, physical frailty alone, and both. J Am Geriatr Soc 68(12):2822-2830, 2020.

Gross AL, Carlson MC, Chu NM, McAdams-DeMarco MA, Mungas D, Simonsick EM, Varadhan R, Xue QL, Walston J, Bandeen-Roche K: Derivation of a measure of physiological multisystem dysregulation: Results from WHAS and Health ABC. Mech Ageing Dev 188:111258, 2020.

Guralnik J, Bandeen-Roche K, Bhasin SAR, Eremenco S, Landi F, Muscedere J, Perera S, Reginster JY, Woodhouse L, Vellas B: Clinically meaningful change for physical performance: perspectives of the ICFSR Task Force. J Frailty Aging 9(1):9-13, 2020.

Hirsch AG, Nordberg C, Bandeen-Roche K, Tan BK, Schleimer RP, Kern RC, Sundaresan A, Pinto JM, Kennedy TL, Greene JS, Kuiper JR, Schwartz BS: Radiologic sinus inflammation and symptoms of chronic rhinosinusitis in a population-based sample. Allergy 75(4):911-920, 2020.

Hladek MD, Gill J, Bandeen-Roche K, Walston J, Allen J, Hinkle JL, Lorig K, Szanton SL: High coping self-efficacy associated with lower odds of pre-frailty/frailty in older adults with chronic disease. Aging Ment Health 24(12):1956-1962, 2020.

Ip EH, Chen SH, Bandeen-Roche K, Speiser JL, Cai L, Houston DK: Longitudinal partially ordered data analysis for preclinical sarcopenia. Stat Med 39(24):3313-3328, 2020.

Jock BWI, Bandeen Roche K, Caldas SV, Redmond L, Fleischhacker S, Gittelsohn J: Latent class analysis offers insight into the complex food environments of Native American communities: findings from the randomly selected OPREVENT2 trial baseline sample. Int J Environ Res Public Health 17(4): E1237, 2020.

Lee MJ, Varadaraj V, Tian J, Bandeen-Roche K, Swenor BK: The association between frailty and uncorrected refractive error in older adults. Ophthalmic Epidemiol 27(3):219-225, 2020.

Kuiper JR, Hirsch AG, Bandeen-Roche K, Sundaresan AS, Tan BK, Kern RC, Schleimer RP, Schwartz BS: A new approach to categorization of radiologic inflammation in chronic rhinosinusitis. PLoS One 15(6):e0235432, 2020.

McAlexander TP, Bandeen-Roche K, Buckley JP, Pollak J, Michos ED, McEvoy JW, Schwartz BS: Unconventional natural gas development and hospitalization for heart failure in Pennsylvania. J Am Coll Cardiol 76(24):2862-2874, 2020.

Piggott DA, Bandeen-Roche K, Mehta SH, Brown TT, Yang H, Walston JD, Leng SX, Kirk GD: Frailty transitions, inflammation, and mortality among persons aging with HIV infection and injection drug use. AIDS 34(8):1217-1225, 2020.

Swenor BK, Lee MJ, Tian J, Varadaraj V, Bandeen-Roche K: Visual impairment and frailty: examining an understudied relationship. J Gerontol A Biol Sci Med Sci 75(3):596-602, 2020.

Van Domelen DR, Bandeen-Roche K: A note on proposed estimation procedures for claims-based frailty indexes. Am J Epidemiol 189(5):369-371, 2020.

Xue QL, Tian J, Walston JD, Chaves PHM, Newman AB, Bandeen-Roche K: Discrepancy in frailty identification: move beyond predictive validity. J Gerontol A Biol Sci Med Sci 75(2):387-393, 2020.

Chu NM, Bandeen-Roche K, Tian J, Kasper JD, Gross AL, Carlson MC, Xue QL: Hierarchical development of frailty and cognitive impairment: clues into etiological pathways. J Gerontol A Biol Sci Med Sci 74(11):1761-1770, 2019.

Chu NM, Gross AL, Shaffer AA, Haugen CE, Norman SP, Xue QL, Sharrett AR, Carlson MC, Bandeen-Roche K, Segev DL, McAdams-DeMarco MA: Frailty and changes in cognitive function after kidney transplantation. J Am Soc Nephrol 30(2):336-345, 2019.

Clark DV, Banura P, Bandeen-Roche K, Liles WC, Kain KC, Scheld WM, Moss WJ, Jacob ST: Biomarkers of endothelial activation/dysfunction distinguish sub-groups of Ugandan patients with sepsis and differing mortality risks. JCI Insight 4(10):e127623, 2019.

Damluji AA, Bandeen-Roche K, Berkower C, Boyd CM, Al-Damluji MS, Cohen MG, Forman DE, Chaudhary R, Gerstenblith G, Walston JD, Resar JR, Moscucci M: Percutaneous coronary intervention in older patients with ST-segment elevation myocardial infarction and cardiogenic shock. J Am Coll Cardiol 73(15):1890-1900, 2019.

Damluji AA, Huang J, Bandeen-Roche K, Forman DE, Gerstenblith G, Moscucci M, Resar JR, Varadhan R, Walston JD, Segal JB: Frailty among older adults with acute myocardial infarction and outcomes from percutaneous coronary interventions. J Am Heart Assoc 8(17):e013686, 2019.

Deal JA, Sharrett AR, Albert M, Bandeen-Roche K, Burgard S, Thomas SD, Gottesman RF, Knopman D, Mosley T, Klein B, Klein R: Retinal signs and risk of incident dementia in the Atherosclerosis Risk in Communities study. Alzheimers Dement 15(3):477-486, 2019.

Jackson H, Engelman M, Bandeen-Roche K: Robust respondents and lost limitations: the implications of nonrandom missingness for the estimation of health trajectories. J Aging Health 31(4):685-708, 2019.

Kim J, Bandeen-Roche K: Parametric estimation of association in bivariate failure-time data subject to competing risks: sensitivity to underlying assumptions. Lifetime Data Anal 25(2):259-279, 2019.

Kuiper JR, Hirsch AG, Bandeen-Roche K, Sundaresan AS, Tan BK, Kern RC, Schleimer RP, Schwartz BS: Workplace indirect cost impacts of nasal and sinus symptoms and related conditions. J Occup Environ Med 61(8):e333-e339, 2019.

Varadaraj V, Lee MJ, Tian J, Ramulu PY, Bandeen-Roche K, Swenor BK: Near vision impairment and frailty: evidence of an association. Am J Ophthalmol 208:234-241, 2019.

Varadhan R, Russ DW, Gabr RE, Huang J, Kalyani RR, Xue QL, Cappola AR, Bandeen-Roche K, Fried LP: Relationship of physical frailty to phosphocreatine recovery in muscle after mild exercise stress in the oldest-old women. J Frailty Aging 8(4):162-168, 2019.

Walker KA, Sharrett AR, Wu A, Schneider ALC, Albert M, Lutsey PL, Bandeen-Roche K, Coresh J, Gross AL, Windham BG, Knopman DS, Power MC, Rawlings AM, Mosley TH, Gottesman RF: Association of midlife to late-life blood pressure patterns with incident dementia. JAMA 322(6):535-545, 2019.

Walston J, Bandeen-Roche K, Buta B, Bergman H, Gill TM, Morley JE, Fried LP, Robinson TN, Afilalo J, Newman AB, Lopez-Otin C, De Cabo R, Theou O, Studenski S, Cohen HJ, Ferrucci L: Moving frailty toward clinical practice: NIA Intramural Frailty Science Symposium summary. J Am Geriatr Soc 67(8):1559-1564, 2019.

Akpan A, Roberts C, Bandeen-Roche K, Batty B, Bausewein C, Bell D, Bramley D, Bynum J, Cameron ID, Chen LK, Ekdahl A, Fertig A, Gentry T, Harkes M, Haslehurst D, Hope J, Hurtado DR, Lyndon H, Lynn J, Martin M, Isden R, Raso FM, Shaibu S, Shand J, Sherrington C, Sinha S, Turner G, De Vries N, Yi GJ, Young J, Banerjee J: Standard set of health outcome measures for older persons. BMC Geriatr 18(1):36, 2018.

Cole M, Bandeen-Roche K, Hirsch AG, Kuiper JR, Sundaresan AS, Tan BK, Schleimer RP, Kern RC, Schwartz BS: Longitudinal evaluation of clustering of chronic sinonasal and related symptoms using exploratory factor analysis. Allergy 73(8):1715-1723, 2018.

Deal JA, Sharrett AR, Rawlings AM, Gottesman RF, Bandeen-Roche K, Albert M, Knopman D, Selvin E, Wasserman BA, Klein B, Klein R: Retinal signs and 20-year cognitive decline in the Atherosclerosis Risk in Communities Study. Neurology 90(13):e1158-e1166, 2018.

Koehler K, Ellis JH, Casey JA, Manthos D, Bandeen-Roche K, Platt R, Schwartz BS: Exposure assessment using secondary data sources in unconventional natural gas development and health studies. Environ Sci Technol 52(10):6061-6069, 2018.

Kuiper JR, Hirsch AG, Bandeen-Roche K, Sundaresan AS, Tan BK, Schleimer RP, Kern RC, Stewart WF, Schwartz BS: Prevalence, severity, and risk factors for acute exacerbations of nasal and sinus symptoms by chronic rhinosinusitis status. Allergy 73(6):1244-1253, 2018.

Power MC, Rawlings A, Sharrett AR, Bandeen-Roche K, Coresh J, Ballantyne CM, Pokharel Y, Michos ED, Penman A, Alonso A, Knopman D, Mosley TH, Gottesman RF: Association of midlife lipids with 20-year cognitive change: a cohort study. Alzheimers Dement 14(2):167-177, 2018.

Sundaresan AS, Hirsch AG, Young AJ, Pollak J, Tan BK, Schleimer RP, Kern RC, Kennedy TL, Greene JS, Stewart WF, Bandeen-Roche K, Schwartz BS: Longitudinal evaluation of chronic rhinosinusitis symptoms in a population-based sample. J Allergy Clin Immunol Pract 6(4):1327-1335, 2018.

Varadhan R, Walston JD, Bandeen-Roche K: Can a link be found between physical resilience and frailty in older adults by studying dynamical systems? J Am Geriatr Soc 66(8):1455-1458, 2018.

Joshua Betz (go to top of document)

Deal JA, Jiang K, Betz JF, Clemens GD, Zhu J, Reed NS, Garibaldi BT, Swenor BK: COVID-19 clinical outcomes by patient disability status: A retrospective cohort study. Disabil Health J 16(2):101441, 2023.

Garcia Morales EE, Croll PH, Palta P, Goedegebure A, Reed NS, Betz JF, Lin FR, Deal JA: Association of carotid atherosclerosis with hearing loss: a cross-sectional analysis of the Atherosclerosis Risk in Communities Study. JAMA Otolaryngol Head Neck Surg 149(3):223-230, 2023.

Robinson ML, Morris CP, Betz JF, Zhang Y, Bollinger R, Wang N, Thiemann DR, Fall A, Eldesouki RE, Norton JM, Gaston DC, Forman M, Luo CH, Zeger SL, Gupta A, Garibaldi BT, Mostafa HH: Impact of severe acute respiratory syndrome coronavirus 2 variants on inpatient clinical outcome. Clin Infect Dis 76(9):1539-1549, 2023.

Andersen KM, Joseph CS, Mehta HB, Streiff MB, Betz JF, Bollinger RC Jr, Fisher AM, Gupta A, LeMaistre CF, Robinson ML, Xu Y, Ng DK, Alexander GC, Garibaldi BT: Thromboprophylaxis in people hospitalized with COVID-19: Assessing intermediate or standard doses in a retrospective cohort study. Res Pract Thromb Haemost 6(5):e12753, 2022.

Archer KR, Davidson CA, Alkhoury D, Vanston SW, Moore TL, Deluca A, Betz JF, Thompson RE, Obremskey WT, Slobogean GP, Melton DH, Wilken JM, Karunakar MA, Rivera JC, Mir HR, McKinley TO, Frey KP, Castillo RC, Wegener ST, METRC: Cognitive-Behavioral-Based Physical Therapy for Improving Recovery After Traumatic Orthopaedic Lower Extremity Injury (CBPT-Trauma). J Orthop Trauma 36(Suppl 1):S1-S7, 2022.

Collaco JM, Raraigh KS, Betz J, Aksit MA, Blau N, Brown J, Dietz HC, MacCarrick G, Nogee LM, Sheridan MB, Vernon HJ, Beaty TH, Louis TA, Cutting GR: Accurate assignment of disease liability to genetic variants using only population data. Genet Med 24(1):87-99, 2022.

Garcia Morales EE, Ting J, Gross AL, Betz JF, Jiang K, Du S, Power MC, Reed NS, Sharrett AR, Lin FR, Deal JA: Association of cigarette smoking patterns over 30 years with audiometric hearing impairment and speech-in-noise perception: the Atherosclerosis Risk in Communities Study. JAMA Otolaryngol Head Neck Surg 148(3):243-251, 2022.

Garibaldi BT, Wang K, Robinson ML, Betz J, Caleb Alexander G, Andersen KM, Joseph CS, Mehta HB, Korwek K, Sands KE, Fisher AM, Bollinger RC, Xu Y: Real-world effectiveness of remdesivir in adults hospitalized with coronavirus disease 2019 (COVID-19): a retrospective, multicenter comparative effectiveness study. Clin Infect Dis 75(1):e516-e524, 2022.

Han H, Lin Z, Soldan A, Pettigrew C, Betz JF, Oishi K, Li Y, Liu P, Albert M, Lu H: Longitudinal changes in global cerebral blood flow in cognitively normal older adults: a phase-contrast MRI study. J Magn Reson Imaging 56(5):1538-1545, 2022.

Kim AS, Betz JF, Albert M, Deal JA, Faucette SP, Oh ES, Reed NS, Lin FR, Nieman CL: Accuracy of self- and proxy-rated hearing among older adults with and without cognitive impairment. J Am Geriatr Soc 70(2):490-500, 2022.

Kim AS, Betz JF, Reed NS, Ward BK, Nieman CL: Prevalence of tympanic membrane perforations among adolescents, adults, and older adults in the United States. Otolaryngol Head Neck Surg 167(2):356-358, 2022.

Manabe YC, Betz J, Jackson O, Asoala V, et al: Clinical evaluation of the BioFire Global Fever Panel for the identification of malaria, leptospirosis, chikungunya, and dengue from whole blood: a prospective, multicentre, cross-sectional diagnostic accuracy study. Lancet Infect Dis 22(9):1356-1364, 2022.

Nieman CL, Betz J, Garcia Morales EE, Suen JJ, Trumbo J, Marrone N, Han HR, Szanton SL, Lin FR: Effect of a community health worker-delivered personal sound amplification device on self-perceived communication function in older adults with hearing loss: a randomized clinical trial. JAMA 328(23):2324-2333, 2022.

Smith JR, Betz JF, Garcia EE, Jiang K, Swenor BK, Reed NS, Deal JA: Self-reported dual sensory impairment and subjective cognitive complaints among older adults in the 2019 National Health Interview Survey. Am J Audiol 31(4):1202-1209, 2022.

Standeven LR, Osborne LM, Betz JF, Yenokyan G, Voegtline K, Hantsoo L, Payne JL: Allopregnanolone and depression and anxiety symptoms across the peripartum: an exploratory study. Arch Womens Ment Health 25(2):521-526, 2022.

Ting J, Jiang K, Du S, Betz J, Reed N, Power MC, Gottesman R, Sharrett AR, Griswold ME, Walker KA, Miller ER, Lin FR, Deal JA: Longitudinal blood pressure patterns from mid- to late life and late-life hearing loss in the Atherosclerosis Risk in Communities Study. J Gerontol A Biol Sci Med Sci 77(3):640-646, 2022.

Wright WF, Betz JF, Auwaerter PG: Prospective studies comparing structured vs nonstructured diagnostic protocol evaluations among patients with fever of unknown origin: a systematic review and meta-analysis. JAMA Netw Open 5(6):e2215000, 2022.

Yi JS, Garcia Morales EE, Betz JF, Deal JA, Dean LT, Du S, Goman AM, Griswold ME, Palta P, Rebok GW, Reed NS, Thorpe RJ, Lin FR, Nieman CL: Individual life-course socioeconomic position and hearing aid use in the Atherosclerosis Risk in Communities Study. J Gerontol A Biol Sci Med Sci 77(3):645-653, 2022.

Askenase MH, Goods BA, Beatty HE, Steinschneider AF, ..., Thompson RE, ..., ICHseq Investigators MISTIE III Investigators (includes Betz J): Longitudinal transcriptomics define the stages of myeloid activation in the living human brain after intracerebral hemorrhage. Sci Immunol 6(56):eabd6279, 2021.

Bowring MG, Wang Z, Xu Y, Betz J, Muschelli J, Garibaldi BT, Zeger SL: Outcome-stratified analysis of biomarker trajectories for patients infected with severe acute respiratory syndrome coronavirus 2. Am J Epidemiol 190(10):2094-2106, 2021.

Deal JA, Betz J, Lin FR, Reed NS: Interpreting results from epidemiologic studies. Semin Hear 42(1):3-9, 2021.

Goman AM, Gao T, Betz J, Reed NS, Deal JA, Lin FR, ACHIEVE-P Study Group: Association of hearing loss with physical, social, and mental activity engagement. Semin Hear 42(1):59-65, 2021.

Kim AS, Betz JF, Nieman CL, Hoyer MR, Applebaum J, Lin FR, Goman AM: Long-term impact of hearing aid provision or cochlear implantation on hearing handicap. Laryngoscope 131(5):1122-1126, 2021.

Scully EP, Schumock G, Fu M, Massaccesi G, Muschelli J, Betz J, Klein EY, West NE, Robinson M, Garibaldi BT, Bandeen-Roche K, Zeger S, Klein SL, Gupta A: Sex and gender differences in testing, hospital admission, clinical presentation, and drivers of severe outcomes from COVID-19. Open Forum Infect Dis 8(9):ofab448, 2021.

Steingrimsson JA, Betz J, Qian T, Rosenblum M: Optimized adaptive enrichment designs for three-arm trials: learning which subpopulations benefit from different treatments. Biostatistics 22(2):283-297, 2021.

Suen JJ, Betz J, Reed NS, Deal JA, Lin FR, Goman AM: Prevalence of asymmetric hearing among adults in the United States. Otol Neurotol 42(2):e111-e113, 2021.

Wongvibulsin S, Garibaldi BT, Antar AAR, Wen J, Wang MC, Gupta A, Bollinger R, Xu Y, Wang K, Betz JF, Muschelli J, Bandeen-Roche K, Zeger SL, Robinson ML: Development of Severe COVID-19 Adaptive Risk Predictor (SCARP), a calculator to predict severe disease or death in hospitalized patients with COVID-19. Ann Intern Med 174(6):777-785, 2021.

Wu HC, Thallmayer T, Deal JA, Betz JF, Reed NS, Lin FR: Prevalence trends in hearing aid use among US adults aged 50 to 69 years with hearing loss-2011 to 2016 vs 1999 to 2004. JAMA Otolaryngol Head Neck Surg 147(9):831-832, 2021.

Armstrong NM, Deal JA, Betz J, Kritchevsky S, Pratt S, Harris T, Barry LC, Simonsick EM, Lin FR: Associations of hearing loss and depressive symptoms with incident disability in older adults: Health, Aging, and Body Composition Study. J Gerontol A Biol Sci Med Sci 75(3):531-536, 2020.

Kim AS, Betz JF, Goman AM, Poe DS, Reed NS, Ward BK, Nieman CL: Prevalence and population estimates of obstructive eustachian tube dysfunction in US adolescents. JAMA Otolaryngol Head Neck Surg 146(8):763-765, 2020.

Kim SJ, Reed N, Betz JF, Abraham A, Lee MJ, Sharrett AR, Lin FR, Deal JA: Association between microvascular retinal signs and age-related hearing loss in the Atherosclerosis Risk in Communities Neurocognitive Study (ARIC-NCS). JAMA Otolaryngol Head Neck Surg 146(2):152-159, 2020.

Shah M, Paradis S, Betz J, Beylis N, Bharadwaj R, Caceres T, Gotuzzo E, Joloba M, Mave V, Nakiyingi L, Nicol MP, Pradhan N, King B, Armstrong D, Knecht D, Maus CE, Cooper CK, Dorman SE, Manabe YC: Multicenter study of the accuracy of the BD MAX multidrug-resistant tuberculosis assay for detection of Mycobacterium tuberculosis complex and mutations associated with resistance to rifampin and isoniazid. Clin Infect Dis 71(5):1161-1167, 2020.

Afify A, Betz JF, Riabinina O, Lahondere C, Potter CJ: Commonly used insect repellents hide human odors from anopheles mosquitoes. Curr Biol 29(21):3669-3680, 2019.

Applebaum J, Hoyer M, Betz J, Lin FR, Goman AM: Long-term subjective loneliness in adults after hearing loss treatment. Int J Audiol 58(8):464-467, 2019.

Bailey CR, Arun A, Towsley M, Choi WK, Betz JF, MacKenzie S, Areda MA, Duvvuri M, Mitchell S, Weiss CR: MVP(TM) micro vascular plug systems for the treatment of pulmonary arteriovenous malformations. Cardiovasc Intervent Radiol 42(3):389-395, 2019.

DeLuca A, Betz J, Bollinger R, Ray S, Manabe Y: Users beware! Biological variation in complete blood counts over short time intervals. BMJ Evid Based Med 24(6):207-208, 2019.

Hanley DF, Thompson RE, Rosenblum M, Yenokyan G, ..., Betz JF, Sugar EA, et al: Efficacy and safety of minimally invasive surgery with thrombolysis in intracerebral haemorrhage evacuation (MISTIE III): a randomised, controlled, open-label, blinded endpoint phase 3 trial. Lancet 393(10175):1021-1032, 2019.

Osborne LM, Betz JF, Yenokyan G, Standeven LR, Payne JL: The role of allopregnanolone in pregnancy in predicting postpartum anxiety symptoms. Front Psychol 10:1033, 2019.

Reed NS, Betz JF, Kucharska-Newton AM, Lin FR, Deal JA: Hearing loss and satisfaction with healthcare: an unexplored relationship. J Am Geriatr Soc 67(3):624-626, 2019.

Reed NS, Huddle MG, Betz J, Power MC, Pankow JS, Gottesman R, Richey Sharrett A, Mosley TH, Lin FR, Deal JA: Association of midlife hypertension with late-life hearing loss. Otolaryngol Head Neck Surg 161(6):996-1003, 2019.

Akinboyo IC, Voskertchian A, Gorfu G, Betz JF, Ross TL, Carroll KC, Milstone AM: Epidemiology and risk factors for recurrent Staphylococcus aureus colonization following active surveillance and decolonization in the NICU. Infect Control Hosp Epidemiol 39(11):1334-1339, 2018.

Reed NS, Deal JA, Huddle MG, Betz JF, Bailey BE, McGlumphy EJ, Eghrari AO, Riazuddin SA, Lin FR, Gottsch JD: Pilot study of audiometric patterns in Fuchs corneal dystrophy. J Speech Lang Hear Res 61(10):2604-2608, 2018.

Brian Caffo (go to top of document)

Breining BL, Faria AV, Tippett DC, Stockbridge MD, Meier EL, Caffo B, Hermann O, Friedman R, Meyer A, Tsapkini K, Hillis AE: Association of regional atrophy with naming decline in primary progressive aphasia. Neurology 100(6):e582-e594, 2023.

Bu X, Gao Y, Liang K, Bao W, Chen Y, Guo L, Gong Q, Lu H, Caffo B, Mori S, Huang X: Multivariate associations between behavioural dimensions and white matter across children and adolescents with and without attention-deficit/hyperactivity disorder. J Child Psychol Psychiatry 64(2):244-253, 2023.

Crasta JE, Nebel MB, Svingos A, Tucker RN, Chen HW, Busch T, Caffo BS, Stephens J, Suskauer SJ: Rethinking recovery in adolescent concussions: network-level functional connectivity alterations associated with motor deficits. Hum Brain Mapp 44(8):3271-3282, 2023.

Gujar SK, Manzoor K, Wongsripuemtet J, Wang G, Ryan D, Agarwal S, Lindquist M, Caffo B, Pillai JJ, Sair HI: Identification of the language network from resting-state fMRI in patients with brain tumors: how accurate are experts? AJNR Am J Neuroradiol 44(3):274-282, 2023.

Morales Pantoja IE, Smirnova L, Muotri AR, Wahlin KJ,..., Caffo B, Szalay AS, Han F, et al: First Organoid Intelligence (OI) workshop to form an OI community. Front Artif Intell 6:1116870, 2023.

Nath T, Caffo B, Wager T, Lindquist MA: A machine learning based approach towards high-dimensional mediation analysis. Neuroimage 268:119843, 2023.

Tang B, Levine M, Adamek JH, Wodka EL, Caffo BS, Ewen JB: Evaluating causal psychological models: a study of language theories of autism using a large sample. Front Psychol 14:1060525, 2023.

Tang B, Zhao Y, Venkataraman A, Tsapkini K, Lindquist MA, Pekar J, Caffo B: Differences in functional connectivity distribution after transcranial direct-current stimulation: a connectivity density point of view. Hum Brain Mapping 44(1):170-185, 2023.

Berardi G, Frey-Law L, ..., Lindquist M, Caffo BS, Crainiceanu C, Zeger S, ..., Taub M, et al: Multi-site observational study to assess biomarkers for susceptibility or resilience to chronic pain: The Acute to Chronic Pain Signatures (A2CPS) study protocol. Front Med 9:849214, 2022.

Breining BL, Faria AV, Caffo B, Meier EL, Sheppard SM, Sebastian R, Tippett DC, Hillis AE: Neural regions underlying object and action naming: Complementary evidence from acute stroke and primary progressive aphasia. Aphasiology 36(6):732-760, 2022.

Caffo BS, D'Asaro FA, Garcez A, Raffinetti E: Editorial: Explainable artificial intelligence models and methods in finance and healthcare. Front Artif Intell 5:970246, 2022.

Chen H, Caffo B, Stein-O'Brien G, Liu J, Langmead B, Colantuoni C, Xiao L: Two-stage linked component analysis for joint decomposition of multiple biologically related data sets. Biostatistics 23(4):1200-1217, 2022.

Huang Q, Tang B, Romero JC, Yang Y, Elsayed SK, Pahapale G, Lee TJ, Morales Pantoja IE, Han F, Berlinicke C, Xiang T, Solazzo M, Hartung T, Qin Z, Caffo BS, Smirnova L, Gracias DH: Shell microelectrode arrays (MEAs) for brain organoids. Sci Adv 8(33):eabq5031, 2022.

Langenecker SA, Westlund Schreiner M, Thomas LR, Bessette KL, DelDonno SR, Jenkins LM, Easter RE, Stange JP, Pocius SL, Dillahunt A, Love TM, Phan KL, Koppelmans V, Paulus M, Lindquist MA, Caffo B, Mickey BJ, Welsh RC: Using network parcels and resting-state networks to estimate correlates of mood disorder and related research domain criteria constructs of reward responsiveness and inhibitory control. Biol Psychiatry Cogn Neurosci Neuroimaging 7(1):76-84, 2022.

Sheppard SM, Meier EL, Kim KT, Breining BL, Keator LM, Tang B, Caffo BS, Hillis AE: Neural correlates of syntactic comprehension: a longitudinal study. Brain Lang 225:105068, 2022.

Wan B, Caffo B, Vedula SS: A unified framework on generalizability of clinical prediction models. Front Artif Intell 5:872720, 2022.

Wang B, Caffo BS, Luo X, Liu CF, Faria AV, Miller MI, Zhao Y, for the Alzheimer's Disease Neuroimaging Initative: Regularized regression on compositional trees with application to MRI analysis. Applied Statistics 71(3): 541-561, 2022.

Zhao Y, Caffo BS, Ewen JB: B-value and empirical equivalence bound: a new procedure of hypothesis testing. Stat Med 41(6):964-980, 2022.

Zhao Y, Nebel MB, Caffo BS, Mostofsky SH, Rosch KS: Beyond massive univariate tests: Covariance regression reveals complex patterns of functional connectivity related to attention-deficit/hyperactivity disorder, age, sex, and response control. Biol Psychiatry Glob Open Sci 2(1):8-16, 2022.

Al Ammary F, Yu S, Muzaale AD, Segev DL, Liyanage L, Crews DC, Brennan DC, El-Meanawy A, Alqahtani S, Atta MG, Levan ML, Caffo BS, Welling PA, Massie AB: Long-term kidney function and survival in recipients of allografts from living kidney donors with hypertension: a national cohort study. Transpl Int 34(8):1530-1541, 2021.

Al-Khouja A, Shieh E, Fuchs EJ, Marzinke MA, Bakshi RP, Hummert P, Ham AS, Buckheit KW, Breakey J, Weld ED, Chen H, Caffo BS, Buckheit RW, Hendrix CW: Examining the safety, pharmacokinetics, and pharmacodynamics of a rectally administered IQP-0528 gel for HIV pre-exposure prophylaxis: a first-in-human study. AIDS Res Hum Retroviruses 37(6):444-452, 2021.

Beheshtian E, Jalilianhasanpour R, Modir Shanechi A, Sethi V, Wang G, Lindquist MA, Caffo BS, Agarwal S, Pillai JJ, Gujar SK, Sair HI: Identification of the somatomotor network from language task-based fMRI compared with resting-state fMRI in patients with brain lesions. Radiology 301(1):178-184, 2021.

Bridgeford EW, Wang S, Wang Z, Xu T, Craddock C, Dey J, Kiar G, Gray-Roncal W, Colantuoni C, Douville C, Noble S, Priebe CE, Caffo B, Milham M, Zuo XN, Consortium for Reliability and Reproducibility, Vogelstein JT: Eliminating accidental deviations to minimize generalization error and maximize replicability: Applications in connectomics and genomics. PLoS Comput Biol 17(9):e1009279, 2021.

Choe AS, Tang B, Smith KR, Honari H, Lindquist MA, Caffo BS, Pekar JJ: Phase-locking of resting-state brain networks with the gastric basal electrical rhythm. PLoS One 16(1):e0244756, 2021.

Crasta JE, Raja AE, Caffo BS, Hluchan CM, Suskauer SJ: The effect of age and competition level on subtle motor performance in adolescents medically cleared postconcussion: preliminary findings. Am J Phys Med Rehabil 100(6):563-569, 2021.

Faria AV, Zhao Y, Ye C, Hsu J, Yang K, Cifuentes E, Wang L, Mori S, Miller M, Caffo B, Sawa A: Multimodal MRI assessment for first episode psychosis: A major change in the thalamus and an efficient stratification of a subgroup. Hum Brain Mapp 42(4):1034-1053, 2021.

Gill RE, Tang B, Smegal L, Adamek JH, McAuliffe D, Lakshmanan BM, Srivastava S, Quain AM, Sebold AJ, Lin DDM, Kossoff EH, Caffo B, Comi AM, Ewen JB: Quantitative EEG improves prediction of Sturge-Weber syndrome in infants with port-wine birthmark. Clin Neurophysiol 132(10):2440-2446, 2021.

Koenecke A, Powell M, Xiong R, Shen Z, Fischer N, Huq S, Khalafallah AM, Trevisan M, Sparen P, Carrero JJ, Nishimura A, Caffo B, Stuart EA, Bai R, Staedtke V, Thomas DL, Papadopoulos N, Kinzler KW, Vogelstein B, Zhou S, Bettegowda C, Konig MF, Mensh BD, Vogelstein JT, Athey S: Alpha-1 adrenergic receptor antagonists to prevent hyperinflammation and death from lower respiratory tract infection. Elife 10:e61700, 2021.

Powell M, Koenecke A, Byrd JB, Nishimura A, Konig MF, Xiong R, Mahmood S, Mucaj V, Bettegowda C, Rose L, Tamang S, Sacarny A, Caffo B, Athey S, Stuart EA, Vogelstein JT: Ten rules for conducting retrospective pharmacoepidemiological analyses: example COVID-19 study. Front Pharmacol 12:700776, 2021.

Shafer AT, Beason-Held L, An Y, Williams OA, Huo Y, Landman BA, Caffo BS, Resnick SM: Default mode network connectivity and cognition in the aging brain: the effects of age, sex, and APOE genotype. Neurobiol Aging 104:10-23, 2021.

Wang B, Luo X, Zhao Y, Caffo B: Semiparametric partial common principal component analysis for covariance matrices. Biometrics 77(4):1175-1186, 2021.

Zhao Y, Caffo B, Luo X: Principal regression for high dimensional covariance matrices. Electron J Stat 15(2): 4192-4235, 2021.

Zhao Y, Caffo BS, Wang B, Li CR, Luo X: A whole-brain modeling approach to identify individual and group variations in functional connectivity. Brain Behav 11(1):e01942, 2021.

Zhao Y, Ficek B, Webster K, Frangakis C, Caffo B, Hillis AE, Faria A, Tsapkini K: White matter integrity predicts electrical stimulation (tDCS) and language therapy effects in primary progressive aphasia. Neurorehabil Neural Repair 35(1):44-57, 2021.

Zhao Y, Li L, Caffo BS: Multimodal neuroimaging data integration and pathway analysis. Biometrics 77(3):879-889, 2021.

Zhao Y, Wang B, Mostofsky SH, Caffo BS, Luo X: Covariate Assisted Principal regression for covariance matrix outcomes. Biostatistics 22(3):629-645, 2021.

Bae S, Massie AB, Caffo BS, Jackson KR, Segev DL: Machine learning to predict transplant outcomes: helpful or hype? A national cohort study. Transpl Int 33(11):1472-1480, 2020.

de Aguiar V, Zhao Y, Faria A, Ficek B, Webster KT, Wendt H, Wang Z, Hillis AE, Onyike CU, Frangakis C, Caffo B, Tsapkini K: Brain volumes as predictors of tDCS effects in primary progressive aphasia. Brain Lang 200:104707, 2020.

Gherman A, Muschelli J, Caffo B, Crainiceanu C: Rxnat: An open-source R package for XNAT-based repositories. Front Neuroinform 14:572068, 2020.

Jalilianhasanpour R, Chen H, Caffo B, Johnson P, Beheshtian E, Yousem DM: Are women disadvantaged in academic radiology? Acad Radiol 27(12):1760-1766, 2020.

McAuliffe D, Zhao Y, Pillai AS, Ament K, Adamek J, Caffo BS, Mostofsky SH, Ewen JB: Learning of skilled movements via imitation in ASD. Autism Res 13(5):777-784, 2020.

Mejia AF, Nebel MB, Wang Y, Caffo BS, Guo Y: Template independent component analysis: targeted and reliable estimation of subject-level brain networks using big data population priors. JASA 115(531):1151-1177, 2020.

Wu D, Chang L, Ernst TM, Caffo BS, Oishi K: Developmental score of the infant brain: characterizing diffusion MRI in term- and preterm-born infants. Brain Struct Funct 225(8):2431-2445, 2020.

Zhao Y, Lindquist MA, Caffo BS: Sparse principal component based high-dimensional mediation analysis. Comput Stat Data Anal 142: 106835, 2020.

Charkhchi P, Wang B, Caffo B, Yousem DM: Bias in neuroradiology peer review: Impact of a "ding" on "dinging" others. AJNR Am J Neuroradiol 40(1):19-24, 2019.

de Aguiar V, Zhao Y, Ficek BN, Webster K, Rofes A, Wendt H, Frangakis C, Caffo B, Hillis AE, Rapp B, Tsapkini K: Cognitive and language performance predicts effects of spelling intervention and tDCS in Primary Progressive Aphasia. Cortex 124:66-84, 2019.

Lindquist MA, Geuter S, Wager TD, Caffo BS: Modular preprocessing pipelines can reintroduce artifacts into fMRI data. Hum Brain Mapp 40(8):2358-2376, 2019.

Liu CF, Padhy S, Ramachandran S, Wang VX, Efimov A, Bernal A, Shi L, Vaillant M, Ratnanather JT, Faria AV, Caffo B, Albert M, Miller MI, BIOCARD Research Team, Alzheimer's Disease Neuroimaging Initiative: Using deep Siamese neural networks for detection of brain asymmetries associated with Alzheimer's Disease and Mild Cognitive Impairment. Magn Reson Imaging 64:190-199, 2019.

Muschelli J, Gherman A, Fortin JP, Avants B, Whitcher B, Clayden JD, Caffo BS, Crainiceanu CM: Neuroconductor: an R platform for medical imaging analysis. Biostatistics 20(2):218-239, 2019.

Ngufor C, Houten HV, Caffo BS, Shah ND, McCoy RG: Mixed effect machine learning: a framework for predicting longitudinal change in hemoglobin A1c. J Biomed Inform 89:56-67, 2019.

Shappell H, Caffo BS, Pekar JJ, Lindquist MA: Improved state change estimation in dynamic functional connectivity using hidden semi-Markov models. Neuroimage 191:243-257, 2019.

Ye C, Albert M, Brown T, Bilgel M, Hsu J, Ma T, Caffo B, Miller MI, Mori S, Oishi K: Extended multimodal whole-brain anatomical covariance analysis: detection of disrupted correlation networks related to amyloid deposition. Heliyon 5(7):e02074, 2019.

Chen OY, Crainiceanu C, Ogburn EL, Caffo BS, Wager TD, Lindquist MA: High-dimensional multivariate mediation with application to neuroimaging data. Biostatistics 19(2):121-136, 2018.

Ficek BN, Wang Z, Zhao Y, Webster KT, Desmond JE, Hillis AE, Frangakis C, Vasconcellos Faria A, Caffo B, Tsapkini K: The effect of tDCS on functional connectivity in primary progressive aphasia. Neuroimage Clin 19:703-715, 2018.

Mejia AF, Nebel MB, Barber AD, Choe AS, Pekar JJ, Caffo BS, Lindquist MA: Improved estimation of subject-level functional connectivity using full and partial correlation with empirical Bayes shrinkage. Neuroimage 172:478-491, 2018.

Sair HI, Hannawi Y, Li S, Kornbluth J, Demertzi A, Di Perri C, Chabanne R, Jean B, Benali H, Perlbarg V, Pekar J, Luyt CE, Galanaud D, Velly L, Puybasset L, Laureys S, Caffo B, Stevens RD, Neuroimaging for Coma Emergence and Recovery (NICER) Consortium: Early functional connectome integrity and 1-year recovery in comatose survivors of cardiac arrest. Radiology 287(1):247-255, 2018.

Nilanjan Chatterjee (go to top of document)

Du S, Chen J, Kim H, Walker ME, Lichtenstein AH, Chatterjee N, Ganz P, Yu B, Vasan RS, Coresh J, Rebholz CM: Plasma protein biomarkers of healthy dietary patterns: results from the Atherosclerosis Risk in Communities Study and the Framingham Heart Study. J Nutr 153(1):34-46, 2023.

Duchen D, Vergara C, Thio CL, Kundu P, Chatterjee N, Thomas DL, Wojcik GL, Duggal P: Pathogen exposure misclassification can bias association signals in GWAS of infectious diseases when using population-based common control subjects. Am J Hum Genet 110(2):336-348, 2023.

Kim ES, Scharpf RB, Garcia-Closas M, Visvanathan K, Velculescu VE, Chatterjee N: Potential utility of risk stratification for multicancer screening with liquid biopsy tests. NPJ Precis Oncol 7(1):39, 2023.

Kim H, Lichtenstein AH, Ganz P, Du S, Tang O, Yu B, Chatterjee N, Appel LJ, Coresh J, Rebholz CM: Identification of protein biomarkers of the Dietary Approaches to Stop Hypertension diet in randomized feeding studies and validation in an observational study. J Am Heart Assoc 12(7):e028821, 2023.

Kundu P, Chatterjee N: Logistic regression analysis of two-phase studies using generalized method of moments. Biometrics 79(1):241-252, 2023.

Namkung H, Yukitake H, Fukudome D, Lee BJ, Tian M, Ursini G, Saito A, Lam S, Kannan S, Srivastava R, Niwa M, Sharma K, Zandi P, Jaaro-Peled H, Ishizuka K, Chatterjee N, Huganir RL, Sawa A: The miR-124-AMPAR pathway connects polygenic risks with behavioral changes shared between schizophrenia and bipolar disorder. Neuron 111(2):220-235, 2023.

Shi J, Shiraishi K, Choi J, ..., Chatterjee N, et al: Genome-wide association study of lung adenocarcinoma in East Asia and comparison with a European population. Nat Commun 14(1):3043, 2023.

Steinbrenner I, Yu Z, Jin J, Schultheiss UT, Kotsis F, Grams ME, Coresh J, Wuttke M, GCKD Investigators, Kronenberg F, Eckardt KU, Chatterjee N, Sekula P, Kottgen A: A polygenic score for reduced kidney function and adverse outcomes in a cohort with chronic kidney disease. Kidney Int 103(2):421-424, 2023.

Ahearn TU, Choudhury PP, ..., Chatterjee N, et al: Breast cancer risk in women from Ghana carrying rare germline pathogenic mutations. Cancer Epidemiol Biomarkers Prev 31(8):1593-1601, 2022.

Ahearn TU, Zhang H, ..., Chatterjee N: Common variants in breast cancer risk loci predispose to distinct tumor subtypes. Breast Cancer Res 24(1):2, 2022.

Berndt SI, Vijai J, Benavente Y, ..., Chatterjee N, et al: Distinct germline genetic susceptibility profiles identified for common non-Hodgkin lymphoma subtypes. Leukemia 36(12):2835-2844, 2022.

Dutta D, He Y, Saha A, Arvanitis M, Battle A, Chatterjee N: Aggregative trans-eQTL analysis detects trait-specific target gene sets in whole blood. Nat Commun 13(1):4323, 2022.

Hurson AN, Pal Choudhury P, Gao C, Husing A, Eriksson M, Shi M, Jones ME, Evans DGR, Milne RL, Gaudet MM, Vachon CM, Chasman DI, Easton DF, Schmidt MK, Kraft P, Garcia-Closas M, Chatterjee N, B-CAST Risk Modelling Group: Prospective evaluation of a breast-cancer risk model integrating classical risk factors and polygenic risk in 15 cohorts from six countries. Int J Epidemiol 50(6):1897-1911, 2022.

Jung AY, Ahearn TU, Behrens S, ..., Chatterjee N, et al: Distinct reproductive risk profiles for intrinsic-like breast cancer subtypes: pooled analysis of population-based studies. J Natl Cancer Inst 114(12):1706-1719, 2022.

Kullo IJ, Lewis CM, Inouye M, Martin AR, Ripatti S, Chatterjee N: Polygenic scores in biomedical research. Nat Rev Genet 23(9):524-532, 2022.

Mhatre S, Lacey B, Sherliker P, Chatterjee N, Rajaraman P, Goel M, Patkar S, Ostwal V, Patil P, Shrikhande SV, Chitkara G, Badwe R, Lewington S, Dikshit R: Reproductive factors and gall-bladder cancer, and the effect of common genetic variants on these associations: a case-control study in India. Int J Epidemiol 51(3):789-798, 2022.

Qi G, Dutta D, Leroux A, Ray D, Muschelli J, Crainiceanu C, Chatterjee N: Genome-wide association studies of 27 accelerometry-derived physical activity measurements identified novel loci and genetic mechanisms. Genet Epidemiol 46(2):122-138, 2022.

Ray D, Munoz A, Zhang M, Li X, Chatterjee N, Jacobson LP, Lau B: Meta-analysis under imbalance in measurement of confounders in cohort studies using only summary-level data. BMC Med Res Methodol 22(1):143, 2022.

Rhee EP, Surapaneni A, Zheng Z, Zhou L, Dutta D, Arking DE, Zhang J, Duong T, Chatterjee N, et al: Trans-ethnic genome-wide association study of blood metabolites in the Chronic Renal Insufficiency Cohort (CRIC) study. Kidney Int 101(4):814-823, 2022.

Shabani M, Dutta D, Ambale-Venkatesh B, Post WS, Taylor KD, Rich SS, Wu CO, Pereira NL, Shah SJ, Chatterjee N, Rotter JI, Arking DE, Lima JAC: Rare genetic variants associated with myocardial fibrosis: Multi-Ethnic Study of Atherosclerosis. Front Cardiovasc Med 9:804788, 2022.

Surapaneni A, Schlosser P, Zhou L, Liu C, Chatterjee N, Arking DE, Dutta D, Coresh J, Rhee EP, Grams ME: Identification of 969 protein quantitative trait loci in an African American population with kidney disease attributed to hypertension. Kidney Int 102(5):1167-1177, 2022.

Wu HH, Hua X, Shi J, Chatterjee N, Zhu B: Utilizing patient information to identify subtype heterogeneity of cancer driver genes. Stat Methods Med Res 31(3):510-519, 2022.

Zhang J, Dutta D, Kottgen A, Tin A, Schlosser P, Grams ME, Harvey B, CKDGen Consortium, Yu B, Boerwinkle E, Coresh J, Chatterjee N: Plasma proteome analyses in individuals of European and African ancestry identify cis-pQTLs and models for proteome-wide association studies. Nat Genet 54(5):593-602, 2022.

Arvanitis M, Qi G, Bhatt DL, Post WS, Chatterjee N, Battle A, McEvoy JW: Linear and nonlinear Mendelian randomization analyses of the association between diastolic blood pressure and cardiovascular events: the J-curve revisited. Circulation 143(9):895-906, 2021.

Ballreich J, Jin J, Kundu P, Chatterjee N: Provider and patient characteristics of medicare beneficiaries who are high-risk for COVID-19 mortality. J Gen Intern Med 36(7):2189-2190, 2021.

Blechter B, Wong JYY, ..., Chatterjee N, et al: Sub-multiplicative interaction between polygenic risk score and household coal use in relation to lung adenocarcinoma among never-smoking women in Asia. Environ Int 147:105975, 2021.

Chen TH, Chatterjee N, Landi MT, Shi J: A penalized regression framework for building polygenic risk models based on summary statistics from genome-wide association studies and incorporating external information. JASA 116(533):133-143, 2021.

de Rochemonteix M, Napolioni V, Sanyal N, Belloy ME, Caporaso NE, Landi MT, Greicius MD, Chatterjee N, Han SS: Likelihood ratio test for gene-environment interaction based on the trend effect of genotype under an additive risk model using the gene-environment independence assumption. Am J Epidemiol 190(1):129-141, 2021.

Grams ME, Surapaneni A, Chen J, Zhou L, Yu Z, Dutta D, Welling PA, Chatterjee N, Zhang J, Arking DE, Chen TK, Rebholz CM, Yu B, Schlosser P, Rhee EP, Ballantyne CM, Boerwinkle E, Lutsey PL, Mosley T, Feldman HI, Dubin RF, Ganz P, Lee H, Zheng Z, Coresh J: Proteins associated with risk of kidney function decline in the general population. J Am Soc Nephrol 32(9):2291-2302, 2021.

Hung RJ, Warkentin MT, Brhane Y, Chatterjee N, et al: Assessing lung cancer absolute risk trajectory based on a polygenic risk model. Cancer Res 81(6):1607-1615, 2021.

Jin J, Agarwala N, Kundu P, Harvey B, Zhang Y, Wallace E, Chatterjee N: Individual and community-level risk for COVID-19 mortality in the United States. Nat Med 27(2):264-269, 2021.

Kapoor PM, Mavaddat N, Choudhury PP, ..., Chatterjee N, et al: Combined associations of a polygenic risk score and classical risk factors with breast cancer risk. J Natl Cancer Inst 113(3):329-337, 2021.

Kim W, Moll M, Qiao D, Hobbs BD, Shrine N, Sakornsakolpat P, Tobin MD, Dudbridge F, Wain LV, Ladd-Acosta C, Chatterjee N, Silverman EK, Cho MH, Beaty TH: Interaction of cigarette smoking and polygenic risk score on reduced lung function. JAMA Netw Open 4(12):e2139525, 2021.

Leroux A, Xu S, Kundu P, Muschelli J, Smirnova E, Chatterjee N, Crainiceanu C: Quantifying the predictive performance of objectively measured physical activity on mortality in the UK Biobank. J Gerontol A Biol Sci Med Sci 76(8):1486-1494, 2021.

Mhatre S, Richmond RC, Chatterjee N, Rajaraman P, Wang Z, Zhang H, Badwe R, Goel M, Patkar S, Shrikhande SV, Patil PS, Davey Smith G, Relton CL, Dikshit RP: The role of gallstones in gallbladder cancer in India: a Mendelian randomization study. Cancer Epidemiol Biomarkers Prev 30(2):396-403, 2021.

Mocci E, Kundu P, ..., Chatterjee N, et al: Smoking modifies pancreatic cancer risk loci on 2q21.3. Cancer Res 81(11):3134-3143, 2021.

Pal Choudhury P, Brook MN, Hurson AN, Lee A, Mulder CV, Coulson P, Schoemaker MJ, Jones ME, Swerdlow AJ, Chatterjee N, Antoniou AC, Garcia-Closas M: Comparative validation of the BOADICEA and Tyrer-Cuzick breast cancer risk models incorporating classical risk factors and polygenic risk in a population-based prospective cohort of women of European ancestry. Breast Cancer Res 23(1):22, 2021.

Qi G, Chatterjee N: A comprehensive evaluation of methods for Mendelian randomization using realistic simulations and an analysis of 38 biomarkers for risk of type 2 diabetes. Int J Epidemiol 50(4):1335-1349, 2021.

Sanyal N, Napolioni V, de Rochemonteix M, Belloy ME, Caporaso NE, Landi MT, Greicius MD, Chatterjee N, Han SS: A robust test for additive gene-environment interaction under the trend effect of genotype using an empirical Bayes-type shrinkage estimator. Am J Epidemiol 190(9):1948-1960, 2021.

Wand H, Lambert SA, Tamburro C, Iacocca MA, ..., Chatterjee N, et al: Improving reporting standards for polygenic scores in risk prediction studies. Nature 591(7849):211-219, 2021.

Yu Z, Jin J, Tin A, Kottgen A, Yu B, Chen J, Surapaneni A, Zhou L, Ballantyne CM, Hoogeveen RC, Arking DE, Chatterjee N, Grams ME, Coresh J: Polygenic risk scores for kidney function and their associations with circulating proteome, and incident kidney diseases. J Am Soc Nephrol 32(12):3161-3173, 2021.

Zhang H, Zhao N, Ahearn TU, Wheeler W, Garcia-Closas M, Chatterjee N: A mixed-model approach for powerful testing of genetic associations with cancer risk incorporating tumor characteristics. Biostatistics 22(4):772-788, 2021.

Arvanitis M, Tampakakis E, Zhang Y, Wang W, Auton A, 23andMe Research Team, Dutta D, Glavaris S, Keramati A, Chatterjee N, Chi NC, Ren B, Post WS, Battle A: Genome-wide association and multi-omic analyses reveal ACTN2 as a gene linked to heart failure. Nat Commun 11(1):1122, 2020.

Bolton KL, Ptashkin RN, Gao T, Braunstein L, Devlin SM, ..., Chatterjee N, et al: Cancer therapy shapes the fitness landscape of clonal hematopoiesis. Nat Genet 52(11):1219-1226, 2020.

Chien LH, Chen CH, Chen TY, ..., Katki HA, Chatterjee N, et al: Predicting lung cancer occurrence in never-smoking females in Asia: TNSF-SQ, a prediction model. Cancer Epidemiol Biomarkers Prev 29(2):452-459, 2020.

ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Consortium (includes Chatterjee N): Pan-cancer analysis of whole genomes. Nature 578(7793):82-93, 2020.

Koutros S, Kogevinas M, ..., Chatterjee N, et al: Diesel exhaust and bladder cancer risk by pathologic stage and grade subtypes. Environ Int 135:105346, 2020.

McGrath BP, Kundu P, Daya N, Coresh J, Selvin E, McEvoy JW, Chatterjee N: Isolated diastolic hypertension in the UK Biobank: Comparison of ACC/AHA and ESC/NICE guideline definitions. Hypertension 76(3):699-706, 2020.

Meisner A, Kundu P, Zhang YD, Lan LV, Kim S, Ghandwani D, Pal Choudhury P, Berndt SI, Freedman ND, Garcia-Closas M, Chatterjee N: Combined utility of 25 disease and risk factor polygenic risk scores for stratifying risk of all-cause mortality. Am J Hum Genet 107(3):418-431, 2020.

Mhatre S, Rajaraman P, Chatterjee N, Bray F, Goel M, Patkar S, Ostwal V, Patil P, Manjrekar A, Shrikhande SV, Badwe R, Dikshit R: Mustard oil consumption, cooking method, diet and gallbladder cancer risk in high- and low-risk regions of India. Int J Cancer 147(6):1621-1628, 2020.

Moore A, Kane E, Wang Z, Panagiotou OA, ..., Chatterjee N, et al: Genetically determined height and risk of non-Hodgkin lymphoma. Front Oncol 9:1539, 2020.

Pal Choudhury P, Chaturvedi AK, Chatterjee N: Evaluating discrimination of a lung cancer risk prediction model using partial risk-score in a two-phase study. Cancer Epidemiol Biomarkers Prev 29(6):1196-1203, 2020.

Pal Choudhury P, Maas P, Wilcox A, Wheeler W, Brook M, Check D, Garcia-Closas M, Chatterjee N: iCARE: An R package to build, validate and apply absolute risk models. PLoS One 15(2):e0228198, 2020.

Pal Choudhury P, Wilcox AN, Brook MN, Zhang Y, Ahearn T, Orr N, Coulson P, Schoemaker MJ, Jones ME, Gail MH, Swerdlow AJ, Chatterjee N, Garcia-Closas M: Comparative validation of breast cancer risk prediction models and projections for future risk stratification. J Natl Cancer Inst 112(3):278-285, 2020.

Ray D, Chatterjee N: Effect of non-normality and low count variants on cross-phenotype association tests in GWAS. Eur J Hum Genet 28(3):300-312, 2020.

Ray D, Chatterjee N: A powerful method for pleiotropic analysis under composite null hypothesis identifies novel shared loci between type 2 diabetes and prostate cancer. PLoS Genet 16(12):e1009218, 2020.

Tang H, Jiang L, Stolzenberg-Solomon RZ, Arslan AA, ..., Chatterjee N, et al: Genome-wide gene-diabetes and gene-obesity interaction scan in 8,255 cases and 11,900 controls from PanScan and PanC4 consortia. Cancer Epidemiol Biomarkers Prev 29(9):1784-1791, 2020.

Wong JYY, Zhang H, Hsiung CA, ..., Chatterjee N, et al: Tuberculosis infection and lung adenocarcinoma: Mendelian randomization and pathway analysis of genome-wide association study data from never-smoking Asian women. Genomics 112(2):1223-1232, 2020.

Yu Z, Coresh J, Qi G, Grams M, Boerwinkle E, Snieder H, Teumer A, Pattaro C, Kottgen A, Chatterjee N, Tin A: A bidirectional Mendelian randomization study supports causal effects of kidney function on blood pressure. Kidney Int 98(3):708-716, 2020.

Zhang H, Ahearn TU, Lecarpentier J, ..., Chatterjee N, et al: Genome-wide association study identifies 32 novel breast cancer susceptibility loci from overall and subtype-specific analyses. Nat Genet 52(6):572-581, 2020.

Zhang YD, Hurson AN, Zhang H, Choudhury PP, ..., Chatterjee N, et al: Assessment of polygenic architecture and risk prediction based on common variants across fourteen cancers. Nat Commun 11(1):3353, 2020.

Zhong J, Jermusyk A, Wu L, Hoskins JW, Collins I, ..., Chatterjee N, et al: A transcriptome-wide association study identifies novel candidate susceptibility genes for pancreatic cancer. J Natl Cancer Inst 112(10):1003-1012, 2020.

Campbell PT, Ambrosone CB, Nishihara R, Aerts HJWL, Bondy M, Chatterjee N, et al: Proceedings of the fourth international molecular pathological epidemiology (MPE) meeting. Cancer Causes Control 30(8):799-811, 2019.

Garcia-Closas M, Chatterjee N: Assessment of breast cancer risk: which tools to use? Lancet Oncol 20(4):463-464, 2019.

Heller R, Meir A, Chatterjee N: Post‐selection estimation and testing following aggregate association tests. JRSS-B 81(3): 547-573, 2019.

Kundu P, Tang R, Chatterjee N: Generalized meta-analysis for multiple regression models across studies with disparate covariate information. Biometrika 106(3):567-585, 2019.

Lee A, Mavaddat N, Wilcox AN, Cunningham AP, Carver T, Hartley S, Babb de Villiers C, Izquierdo A, Simard J, Schmidt MK, Walter FM, Chatterjee N, Garcia-Closas M, Tischkowitz M, Pharoah P, Easton DF, Antoniou AC: BOADICEA: a comprehensive breast cancer risk prediction model incorporating genetic and nongenetic risk factors. Genet Med 21(8):1708-1718, 2019.

Mavaddat N, Michailidou K, ..., Chatterjee N, et al: Polygenic risk scores for prediction of breast cancer and breast cancer subtypes. Am J Hum Genet 104(1):21-34, 2019.

Meisner A, Kundu P, Chatterjee N: Case-only analysis of gene-environment interactions using polygenic risk scores. Am J Epidemiol 188(11):2013-2020, 2019.

Qi G, Chatterjee N: Mendelian randomization analysis using mixture models for robust and efficient estimation of causal effects. Nat Commun 10(1):1941, 2019.

Ratnapriya R, Sosina OA, Starostik MR, Kwicklis M, Kapphahn RJ, Fritsche LG, Walton A, Arvanitis M, Gieser L, Pietraszkiewicz A, Montezuma SR, Chew EY, Battle A, Abecasis GR, Ferrington DA, Chatterjee N, Swaroop A: Retinal transcriptome and eQTL analyses identify genes associated with age-related macular degeneration. Nat Genet 51(4):606-610, 2019.

Vachon CM, Scott CG, Tamimi RM, Thompson DJ, ..., Chatterjee N, et al: Joint association of mammographic density adjusted for age and body mass index and polygenic risk score with breast cancer risk. Breast Cancer Res 21(1):68, 2019.

Abubakar M, Chang-Claude J, Ali HR, Chatterjee N, et al: Etiology of hormone receptor positive breast cancer differs by levels of histologic grade and proliferation. Int J Cancer 143(4):746-757, 2018.

Derkach A, Zhang H, Chatterjee N: Power Analysis for Genetic Association Test (PAGEANT) provides insights to challenges for rare variant association studies. Bioinformatics 34(9):1506-1513, 2018.

Heller R, Chatterjee N, Krieger A, Shi J: Post-selection inference following aggregate level hypothesis testing in large-scale genomic data. JASA 113(524):1770-1783, 2018.

Ji Y, Hong X, Wang G, Chatterjee N, Riley AW, Lee LC, Surkan PJ, Bartell TR, Zuckerman B, Wang X: A prospective birth cohort study on early childhood lead levels and attention deficit hyperactivity disorder: new insight on sex differences. J Pediatr 199:124-131, 2018.

McMaster ML, Berndt SI, Zhang J, ..., Chatterjee N, et al: Two high-risk susceptibility loci at 6p25.3 and 14q32.13 for Waldenstrom macroglobulinemia. Nat Commun 9(1):4182, 2018.

Qi G, Chatterjee N: Heritability informed power optimization (HIPO) leads to enhanced detection of genetic associations across multiple traits. PLoS Genet 14(10):e1007549, 2018.

Rudolph A, Song M, Brook MN, ..., Chatterjee N, et al: Joint associations of a polygenic risk score and environmental risk factors for breast cancer in the Breast Cancer Association Consortium. Int J Epidemiol 47(2):526-536, 2018.

Song M, Wheeler W, Caporaso NE, Landi MT, Chatterjee N: Using imputed genotype data in the joint score tests for genetic association and gene-environment interactions in case-control studies. Genet Epidemiol 42(2):146-155, 2018.

Zhang H, Chatterjee N, Rader D, Chen J: Adjustment of nonconfounding covariates in case-control genetic association studies. AOAS 12(1):200-221, 2018.

Zhang M, Lykke-Andersen S, ..., Chatterjee N, et al: Characterising cis-regulatory variation in the transcriptome of histologically normal and tumour-derived pancreatic tissues. Gut 67(3):521-533, 2018.

Zhang Y, Qi G, Park JH, Chatterjee N: Estimation of complex effect-size distributions using summary-level statistics from genome-wide association studies across 32 complex traits. Nat Genet 50(9):1318-1326, 2018.

Zhu B, Mirabello L, Chatterjee N: A subregion-based burden test for simultaneous identification of susceptibility loci and subregions within. Genet Epidemiol 42(7):673-683, 2018.

Gwendolyn Clemens (go to top of document)

Deal JA, Jiang K, Betz JF, Clemens GD, Zhu J, Reed NS, Garibaldi BT, Swenor BK: COVID-19 clinical outcomes by patient disability status: A retrospective cohort study. Disabil Health J 16(2):101441, 2023.

D'Souza G, Clemens G, Strickler HD, Wiley DJ, Troy T, Struijk L, Gillison M, Fakhry C: Long-term persistence of oral HPV over 7 years of follow-up. JNCI Cancer Spectr 4(5):pkaa047, 2020.

Newman-Toker DE, Wang Z, Zhu Y, Nassery N, Saber Tehrani AS, Schaffer AC, Yu-Moe CW, Clemens GD, Fanai M, Siegal D: Rate of diagnostic errors and serious misdiagnosis-related harms for major vascular events, infections, and cancers: toward a national incidence estimate using the "Big Three." Diagnosis 8(1):67-84, 2020.

D'Souza G, Clemens G, Troy T, Castillo RG, Struijk L, Waterboer T, Bender N, Pierorazio PM, Best SR, Strickler H, Wiley DJ, Haddad RI, Posner M, Fakhry C: Evaluating the utility and prevalence of HPV biomarkers in oral rinses and serology for HPV-related oropharyngeal cancer. Cancer Prev Res 12(10):689-700, 2019.

Newman-Toker DE, Schaffer AC, Yu-Moe CW, Nassery N, Saber Tehrani AS, Clemens GD, Wang Z, Zhu Y, Fanai M, Siegal D: Serious misdiagnosis-related harms in malpractice claims: The "Big Three" - vascular events, infections, and cancers. Diagnosis 6(3):227-240, 2019.

Sharkey P, Pinilla-Monsalve G, Rigamonti A, Carson K, Robison J, Vivas-Buitrago T, Jusue-Torres I, Clemens G, Sanyal A, Hoffberger J, Sankey EW, Lu J, Adams A, Rigamonti D: Health care expenditures of Medicare beneficiaries with normal pressure hydrocephalus. World Neurosurg 127:e548-e555, 2019.

Elizabeth Colantuoni (Johnson) (go to top of document)

Azamfirei R, Mennie C, Dinglas VD, Fatima A, Colantuoni E, et al: Impact of a multifaceted early mobility intervention for critically ill children - the PICU Up! trial: study protocol for a multicenter stepped-wedge cluster randomized controlled trial. Trials 24(1):191, 2023.

Capo-Lugo CE, Young DL, Farley H, Aquino C, McLaughlin K, Colantuoni E, Friedman LA, Kumble S, Hoyer EH: Revealing the tension: the relationship between high fall risk categorization and low patient mobility. J Am Geriatr Soc 71(5):1536-1546, 2023.

Egbert ER, Xiao S, Prochaska E, Ali SO, Colantuoni E, Gadala A, Koontz D, Zhong D, Schumacher CM, Sick-Samuels AC, Debes AK, Milstone AM: Association of healthcare worker behaviors with coronavirus disease 2019 (COVID-19) risk during four pandemic periods and characteristics associated with high-risk behaviors. Antimicrob Steward Healthc Epidemiol 3(1):e16, 2023.

Hoyer EH, Friedman M, Lavezza A, Flanagan E, Kumble S, D'Alessandro M, Gutierrez M, Colantuoni E, Brotman DJ, Young DL: A unit-based, multi-center evaluation of adopting mobility measures and daily mobility goals in the hospital setting. Appl Nurs Res 70:151655, 2023.

Brown CH, Lewis A, Probert J, Parish M, Tian J, Mandal K, Everett A, Colantuoni E, Kamath V, Hogue C, Moghekar A: Perioperative neurofilament light plasma concentrations and cognition before and after cardiac surgery: a prospective nested cohort study. Anesthesiology 137(3):303-314, 2022.

Debes AK, Xiao S, Egbert ER, Caturegli P, Gadala A, Colantuoni E, Sitaras I, Pekosz A, Milstone AM: Neutralizing SARS-CoV-2 spike antibodies against omicron in paired samples after two or three doses of mRNA vaccine. Microbiol Spectr 10(5):e0204622, 2022.

Hashem MD, Hopkins RO, Colantuoni E, Dinglas VD, Sinha P, Aronson Friedman L, Morris PE, Jackson JC, Hough CL, Calfee CS, Needham DM: Six-month and 12-month patient outcomes based on inflammatory subphenotypes in sepsis-associated ARDS: secondary analysis of SAILS-ALTOS trial. Thorax 77(1):22-30, 2022.

Hiser S, Urbanek J, Young DL, McLaughlin KH, Colantuoni E, Brotman DJ, Needham DM, Hoyer E: Improving patient selection for use of consumer grade physical activity monitors in the hospital. Braz J Phys Ther 26(5):100447, 2022.

Johnson J, Latif A, Randive B, Kadam A, ..., Colantuoni E, et al: Implementation of the Comprehensive Unit-Based Safety Program to improve infection prevention and control practices in four neonatal intensive care units in Pune, India. Front Pediatr 9:794637, 2022.

Lemberg KM, Koontz DW, Young DJ, DiDomizio PG, King A, Chen AR, Gamper CJ, Colantuoni E, Milstone AM, Cooper SL: Trainee-led engagement of the care team improves application of an institutional blood culture clinical decision algorithm to pediatric oncology inpatients: a single-institution quality improvement project. Pediatr Qual Saf 7(2):e545, 2022.

Pytell JD, Thakrar AP, Chander G, Colantuoni E: Changes in alcohol consumption by beverage type attributable to the COVID-19 pandemic for 10 states, March 2020 to November 2020: an ecological simulation-based analysis. J Addict Med 16(6):e412-e416, 2022.

Woods-Hill CZ, Colantuoni EA, Koontz DW, Voskertchian A, et al: Association of diagnostic stewardship for blood cultures in critically ill children with culture rates, antibiotic use, and patient outcomes: Results of the Bright STAR collaborative. JAMA Pediatr 176(7):690-698, 2022.

Ambalam V, Sick-Samuels AC, Johnson J, Colantuoni E, Gadala A, Rock C, Milstone AM, CDC Prevention Epicenter Program: Impact of postnatal age on neonatal intensive care unit bloodstream infection reporting. Am J Infect Control 49(9):1191-1193, 2021.

Baldwin MR, Pollack LR, Friedman RA, Norris SP, Javaid A, O'Donnell MR, Cummings MJ, Needham DM, Colantuoni E, Maurer MS, Lederer DJ: Frailty subtypes and recovery in older survivors of acute respiratory failure: a pilot study. Thorax 76(4):350-359, 2021.

Berney S, Hopkins RO, Rose JW, Koopman R, Puthucheary Z, Pastva A, Gordon I, Colantuoni E, Parry SM, Needham DM, Denehy L: Functional electrical stimulation in-bed cycle ergometry in mechanically ventilated patients: a multicentre randomised controlled trial. Thorax 76(7):656-663, 2021.

Brown CH, Edwards C, Lin C, Jones EL, Yanek LR, Esmaili M, Gorashi Y, Skelton R, Kaganov D, Curto R, Lessing NL, Cha S, Colantuoni E, Neufeld K, Sieber F, Dean CL, Hogue CW: Spinal anesthesia with targeted sedation based on bispectral index values compared with general anesthesia with masked bispectral index values to reduce delirium: The SHARP Randomized Controlled Trial. Anesthesiology 135(6):992-1003. 2021.

Cichowitz C, Loevinsohn G, Klein EY, Colantuoni E, Galiatsatos P, Rennert J, Irvin NA: Racial and ethnic disparities in hospital observation in Maryland. Am J Emerg Med 46:532-538, 2021.

Colantuoni E: Clarifying the impact of predicted versus observed control arm mortality rates on randomized trials in critical illness. Crit Care Med 49(4):e483-e484, 2021.

Colantuoni E, Koneru M, Akhlaghi N, Li X, Hashem MD, Dinglas VD, Neufeld KJ, Harhay MO, Needham DM: Heterogeneity in design and analysis of ICU delirium randomized trials: a systematic review. Trials 22(1):354, 2021.

Colantuoni E, Li X, Hashem MD, Girard TD, Scharfstein DO, Needham DM: A structured methodology review showed analyses of functional outcomes are frequently limited to "survivors only" in trials enrolling patients at high risk of death. J Clin Epidemiol 137:126-132, 2021.

Debes AK, Xiao S, Colantuoni E, Egbert ER, Caturegli P, Gadala A, Milstone AM: Association of vaccine type and prior SARS-CoV-2 infection with symptoms and antibody measurements following vaccination among health care workers. JAMA Intern Med 181(12):1660-1662, 2021.

Egbert ER, Xiao S, Colantuoni E, Caturegli P, Gadala A, Milstone AM, Debes AK: Durability of spike immunoglobin G antibodies to SARS-CoV-2 among health care workers with prior infection. JAMA Netw Open 4(8):e2123256, 2021.

Hiser S, Chung CR, Toonstra A, Friedman LA, Colantuoni E, Hoyer E, Needham DM: Inter-rater reliability of the Johns Hopkins Highest Level of Mobility Scale (JH-HLM) in the intensive care unit. Braz J Phys Ther 25(3):352-355, 2021.

Kelly JTD, Colantuoni E, Robinson C, Decker MR: Quantifying the ripple effects of civil war: how armed conflict is associated with more severe violence in the home. Health Hum Rights 23(1):75-89, 2021.

Nakano M, Nomura Y, Whitman G, Sussman M, Schena S, Kilic A, Choi CW, Akiyoshi K, Neufeld KJ, Lawton J, Colantuoni E, Yamaguchi A, Wen M, Smielewski P, Brady K, Bush B, Hogue CW, Brown CH 4th: Cerebral autoregulation in the operating room and intensive care unit after cardiac surgery. Br J Anaesth 126(5):967-974, 2021.

Parry SM, Nalamalapu SR, Nunna K, Rabiee A, Friedman LA, Colantuoni E, Needham DM, Dinglas VD: Six-minute walk distance after critical illness: a systematic review and meta-analysis. J Intensive Care Med 36(3):343-351, 2021.

Peitzmeier SM, Wirtz AL, Beyrer C, Peryshkina A, Sherman SG, Colantuoni E, Decker MR: Polyvictimization among Russian sex workers: intimate partner, police, and pimp violence cluster with client violence. J Interpers Violence 36(15-16):NP8056-NP8081, 2021.

Sick-Samuels AC, Linz M, Bergmann J, Fackler JC, Berenholtz SM, Ralston SL, Hoops K, Dwyer J, Colantuoni E, Milstone AM: Diagnostic stewardship of endotracheal aspirate cultures in a PICU. Pediatrics 147(5):e20201634, 2021.

Tonna JE, Dalton A, Presson AP, Zhang C, Colantuoni E, Lander K, Howard S, Beynon J, Kamdar BB: The effect of a quality improvement intervention on sleep and delirium in critically ill patients in a surgical ICU. Chest 160(3):899-908, 2021.

Ward DS, Absalom AR, Aitken LM, Balas MC, Brown DL, Burry L, Colantuoni E, Coursin D, Devlin JW, Dexter F, Dworkin RH, Egan TD, Elliott D, Egerod I, Flood P, Fraser GL, Girard TD, Gozal D, Hopkins RO, Kress J, Maze M, Needham DM, Pandharipande P, Riker R, Sessler DI, Shafer SL, Shehabi Y, Spies C, Sun LS, Tung A, Urman RD: Design of clinical trials evaluating sedation in critically ill adults undergoing mechanical ventilation: recommendations from Sedation Consortium on Endpoints and Procedures for Treatment, Education, and Research (SCEPTER) Recommendation III. Crit Care Med 49(10):1684-1693, 2021.

Zanettini C, Omar M, Dinalankara W, Imada EL, Colantuoni E, Parmigiani G, Marchionni L: covid19census: U.S. and Italy COVID-19 metrics and other epidemiological data. Database 2021:baab027, 2021.

Zanettini C, Omar M, Dinalankara W, Imada EL, Colantuoni E, Parmigiani G, Marchionni L: Influenza vaccination and COVID-19 mortality in the USA: an ecological study. Vaccines 9(5):427, 2021.

Zhao N, Khamash DF, Koh H, Voskertchian A, Egbert E, Mongodin EF, White JR, Hittle L, Colantuoni E, Milstone AM: Low diversity in nasal microbiome associated with Staphylococcus aureus colonization and bloodstream infections in hospitalized neonates. Open Forum Infect Dis 8(10):ofab475, 2021.

Zhong D, Xiao S, Debes AK, Egbert ER, Caturegli P, Colantuoni E, Milstone AM: Durability of antibody levels after vaccination with mRNA SARS-CoV-2 vaccine in individuals with or without prior infection. JAMA 326(24):2524-2526, 2021.

Dougherty GB, Golden SH, Gross AL, Colantuoni E, Dean LT: Measuring structural racism and its association with BMI. Am J Prev Med 59(4):530-537, 2020.

Friedman LA, Young DL, Nelliot A, Colantuoni E, Mendez-Tellez PA, Needham DM, Dinglas VD: Factors associated with home visits in a 5-year study of acute respiratory distress syndrome survivors. Am J Crit Care 29(6):429-438, 2020.

Gupta P, Martin JL, Needham DM, Vangala S, Colantuoni E, Kamdar BB: Use of actigraphy to characterize inactivity and activity in patients in a medical ICU. Heart Lung 49(4):398-406, 2020.

Hiser S, Toonstra A, Friedman LA, Colantuoni E, Needham DM: Inter-rater reliability of activity measure for post-acute care '6-Clicks' inpatient mobility short form in the intensive care unit. Physiother Res Int 25(4):e1849, 2020.

Hoops KEM, Fackler JC, King A, Colantuoni E, Milstone AM, Woods-Hill C: How good is our diagnostic intuition? Clinician prediction of bacteremia in critically ill children. BMC Med Inform Decis Mak 20(1):144, 2020.

Kamdar BB, Suri R, Suchyta MR, Digrande KF, Sherwood KD, Colantuoni E, Dinglas VD, Needham DM, Hopkins RO: Return to work after critical illness: a systematic review and meta-analysis. Thorax 75(1):17-27, 2020.

Milstone AM, Voskertchian A, Koontz DW, Khamash DF, Ross T, Aucott SW, Gilmore MM, Cosgrove SE, Carroll KC, Colantuoni E: Effect of treating parents colonized with Staphylococcus aureus on transmission to neonates in the intensive care unit: a randomized clinical trial. JAMA 323(4):319-328, 2020.

Nunna K, Al-Ani A, Nikooie R, Friedman LA, Raman V, Wadood Z, Vasishta S, Colantuoni E, Needham DM, Dinglas VD: Participant retention in follow-up studies of acute respiratory failure survivors. Respir Care 65(9):1382-1391, 2020.

Peitzmeier SM, Wirtz AL, Peryshkina A, Sherman S, Colantuoni E, Beyrer C, Decker MR: Associations between violence and HIV risk behaviors differ by perpetrator among Russian sex workers. AIDS Behav 24(3):812-822, 2020.

Rawal H, Young DL, Nikooie R, Al Ani AH, Friedman LA, Vasishta S, Haut ER, Colantuoni E, Needham DM, Dinglas VD: Participant retention in trauma intensive care unit (ICU) follow-up studies: a post-hoc analysis of a previous scoping review. Trauma Surg Acute Care Open 5(1):e000584, 2020.

Semler MW, Bernard GR, Aaron SD, Angus DC, Biros MH, Brower RG, Calfee CS, Colantuoni EA, et al: Identifying clinical research priorities in adult pulmonary and critical care: NHLBI working group report. Am J Respir Crit Care Med 202(4):511-523, 2020.

Wang C, Colantuoni E, Leroux A, Scharfstein DO: idem: an R package for inferences in clinical trials with death and missingness. J Stat Softw 93:12, 2020.

Woods-Hill CZ, Koontz DW, King AF, Voskertchian A, Colantuoni EA, Miller MR, Fackler JC, Bonafide CP, Milstone AM, Xie A, Bright Star Authorship group: Practices, perceptions, and attitudes in the evaluation of critically ill children for bacteremia: a national survey. Pediatr Crit Care Med 21(1):e23-e29, 2020.

Young DL, Colantuoni E, Friedman LA, Seltzer J, Daley K, Ye B, Brotman DJ, Hoyer EH: Prediction of disposition within 48-hours of hospital admission using patient mobility scores. J Hosp Med 15(9):540-543, 2020.

Brown CH 4th, Jones EL, Lin C, Esmaili M, Gorashi Y, Skelton RA, Kaganov D, Colantuoni EA, Yanek LR, Neufeld KJ, Kamath V, Sieber FE, Dean CL, Edwards CC 2nd, Hogue CW: Shaping anesthetic techniques to reduce post-operative delirium (SHARP) study: a protocol for a prospective pragmatic randomized controlled trial to evaluate spinal anesthesia with targeted sedation compared with general anesthesia in older adults undergoing lumbar spine fusion surgery. BMC Anesthesiol 19(1):192, 2019.

Diaz I, Colantuoni E, Hanley DF, Rosenblum M: Improved precision in the analysis of randomized trials with survival outcomes, without assuming proportional hazards. Lifetime Data Anal 25(3):439-468, 2019.

Gibbs SE, Kusunoki Y, Colantuoni E, Moreau C: Sexual activity and weekly contraceptive use among young adult women in Michigan. Popul Stud 73(2):233-245, 2019.

Johnson J, Suwantarat N, Colantuoni E, Ross TL, Aucott SW, Carroll KC, Milstone AM: The impact of chlorhexidine gluconate bathing on skin bacterial burden of neonates admitted to the Neonatal Intensive Care Unit. J Perinatol 39(1):63-71, 2019.

Kelly J, Colantuoni E, Robinson C, Decker MR: From political to personal violence: links between conflict and non-partner physical violence in post-conflict Liberia. Glob Public Health 14(12):1639-1652, 2019.

Khamash DF, Mongodin EF, White JR, Voskertchian A, Hittle L, Colantuoni E, Milstone AM: Association between the developing nasal microbiota of hospitalized neonates and Staphylococcus aureus colonization. Open Forum Infect Dis 6(4):ofz062, 2019.

Rosenberg BJ, Hirano M, Quinzii CM, Colantuoni E, Needham DM, Lederer DJ, Baldwin MR: Growth differentiation factor-15 as a biomarker of strength and recovery in survivors of acute respiratory failure. Thorax 74(11):1099-1101, 2019.

Sick-Samuels AC, Woods-Hill CZ, Fackler JC, Tamma PD, Klaus SA, Colantuoni EE, Milstone AM: Association of a blood culture utilization intervention on antibiotic use in a pediatric intensive care unit. Infect Control Hosp Epidemiol 40(4):482-484, 2019.

Turnbull AE, Hayes MM, Brower RG, Colantuoni E, Basyal PS, White DB, Curtis JR, Needham DM: Effect of documenting prognosis on the information provided to ICU proxies: a randomized trial. Crit Care Med 47(6):757-764, 2019.

Wilhelm JA, Qiu M, Paina L, Colantuoni E, Mukuru M, Ssengooba F, Bennett S: The impact of PEPFAR transition on HIV service delivery at health facilities in Uganda. PLoS One 14(10):e0223426, 2019.

Wozniak AW, Pfoh ER, Dinglas VD, Pronovost PJ, Needham DM, Colantuoni E: Hospital readmission and subsequent decline in long-term survivors of acute respiratory distress syndrome. Am J Crit Care 28(1):76-80, 2019.

Bienvenu OJ, Friedman LA, Colantuoni E, Dinglas VD, Sepulveda KA, Mendez-Tellez P, Shanholz C, Pronovost PJ, Needham DM: Psychiatric symptoms after acute respiratory distress syndrome: a 5-year longitudinal study. Intensive Care Med 44(1):38-47, 2018.

Colantuoni E, Scharfstein DO, Wang C, Hashem MD, Leroux A, Needham DM, Girard TD: Statistical methods to compare functional outcomes in randomized controlled trials with high mortality. BMJ 360:j5748, 2018.

Dinglas VD, Chessare CM, Davis WE, Parker A, Friedman LA, Colantuoni E, Bingham CO, Turnbull AE, Needham DM: Perspectives of survivors, families and researchers on key outcomes for research in acute respiratory failure. Thorax 73(1):7-12, 2018.

Ettinger AK, Riley AW, Colantuoni E, Mendelson T: Trajectories of early parenting practices among low-income ethnically diverse women. J Child Fam Stud 27(2):615-628, 2018.

Heins SE, Wozniak AW, Colantuoni E, Sepulveda KA, Mendez-Tellez PA, Dennison-Himmelfarb C, Needham DM, Dinglas VD: Factors associated with missed assessments in a 2-year longitudinal study of acute respiratory distress syndrome survivors. BMC Med Res Methodol 18(1):55, 2018.

Hiser S, Toonstra A, Friedman LA, Colantuoni E, Connolly B, Needham DM: Interrater reliability of the functional status score for the intensive care unit. JACPT 9(4):186-192, 2018.

Kamdar BB, Sepulveda KA, Chong A, Lord RK, Dinglas VD, Mendez-Tellez PA, Shanholtz C, Colantuoni E, von Wachter TM, Pronovost PJ, Needham DM: Return to work and lost earnings after acute respiratory distress syndrome: a 5-year prospective, longitudinal study of long-term survivors. Thorax 73(2):125-133, 2018.

Kelly JTD, Colantuoni E, Robinson C, Decker MR: From the battlefield to the bedroom: a multilevel analysis of the links between political conflict and intimate partner violence in Liberia. BMJ Glob Health 3(2):e000668, 2018.

Mroz TM, Meadow A, Colantuoni E, Leff B, Wolff JL: Home health agency characteristics and quality outcomes for Medicare beneficiaries with rehabilitation-sensitive conditions. Arch Phys Med Rehabil 99(6):1090-1098, 2018.

Turnbull AE, Sahetya SK, Colantuoni E, Kweku J, Nikooie R, Curtis JR: Inter-rater agreement of intensivists evaluating the goal concordance of preference-sensitive ICU interventions. J Pain Symptom Manage 56(3):406-413, 2018.

Voskertchian A, Akinboyo IC, Colantuoni E, Johnson J, Milstone AM: Association of an active surveillance and decolonization program on incidence of clinical cultures growing Staphylococcus aureus in the neonatal intensive care unit. Infec Control Hosp Epidemiol 39(7):882-884, 2018.

Wong MS, Chan KS, Jones-Smith JC, Colantuoni E, Thorpe RJ Jr, Bleich SN: The neighborhood environment and obesity: understanding variation by race/ethnicity. Prev Med 111:371-377, 2018.

Woods-Hill CZ, Lee L, Xie A, King AF, Voskertchian A, Klaus SA, Smith MM, Miller MR, Colantuoni EA, Fackler JC, Milstone AM: Dissemination of a novel framework to improve blood culture use in pediatric critical care. Pediatr Qual Saf 3(5):e112, 2018.

Ciprian Crainiceanu (go to top of document)

Koffman L, Zhang Y, Harezlak J, Crainiceanu C, Leroux A: Fingerprinting walking using wrist-worn accelerometers. Gait Posture 103:92-98, 2023.

Siddharthan T, Blair PW, Cui E, Pearce J, Herrera P, Liu G, East J, Crainiceanu C, Clark DV, CCPSEI Research Team, Clinical Characterisation Protocol for Severe Infectious Diseases (CCPSEI) Research Team: Additive value of lung ultrasound to clinical parameters for prognosticating COVID-19. ERJ Open Res 9(3):00564-2022, 2023.

Berardi G, Frey-Law L, ..., Lindquist M, Caffo BS, Crainiceanu C, Zeger S, ..., Taub M, et al: Multi-site observational study to assess biomarkers for susceptibility or resilience to chronic pain: The Acute to Chronic Pain Signatures (A2CPS) study protocol. Front Med 9:849214, 2022.

Blair PW, Hwang J, Pearce J, Fong TC, Cui E, Herrera P, Liu G, Crainiceanu C, Siddharthan T, Clark DV, CCPSEI Research Team: Do worsening lung ultrasound scans identify severe COVID-19 trajectories? Front Med 9:1021929, 2022.

Blair PW, Siddharthan T, Liu G, Bai J, Cui E, East J, Herrera P, Anova L, Mahadevan V, Hwang J, Hossen S, Seo S, Sonuga O, Lawrence J, Peters J, Cox AL, Manabe YC, Fenstermacher K, Shea S, Rothman RE, Hansoti B, Sauer L, Crainiceanu C, Clark DV: Point-of-care lung ultrasound predicts severe disease and death due to COVID-19: a prospective cohort study. Crit Care Explor 4(8):e0732, 2022.

Cui E, Leroux A, Smirnova E, Crainiceanu CM: Fast univariate inference for longitudinal functional models. J Comp Graph Stat 31(1): 219-230, 2022.

Etzkorn LH, Liu F, Urbanek JK, Heravi AS, Magnani JW, Plankey MW, Margolich JB, Witt MD, Palella FJ Jr, Haberlen SA, Wu KC, Post WS, Schrack JA, Crainiceanu CM: Patterns of objectively measured physical activity differ between men living with and without HIV. AIDS 36(11):1553-1562, 2022.

Gaynanova I, Punjabi N, Crainiceanu C: Modeling continuous glucose monitoring (CGM) data during sleep. Biostatistics 23(1):223-239, 2022.

Hu M, Crainiceanu C, Schindler MK, Dewey B, Reich DS, Shinohara RT, Eloyan A: Matrix decomposition for modeling lesion development processes in multiple sclerosis. Biostatistics 23(1):83-100, 2022.

Karas M, Muschelli J, Leroux A, Urbanek JK, Wanigatunga AA, Bai J, Crainiceanu CM, Schrack JA: Comparison of accelerometry-based measures of physical activity: retrospective observational data analysis study. JMIR mHealth uHealth 10(7):e38077, 2022.

Ledbetter MK, Tabacu L, Leroux A, Crainiceanu CM, Smirnova E: Cardiovascular mortality risk prediction using objectively measured physical activity phenotypes in NHANES 2003-2006. Prev Med 164:107303, 2022.

Leroux A, Frey KP, Crainiceanu CM, Obremskey WT, Stinner DJ, Bosse MJ, Karunakar MA, O'Toole RV, Carroll EA, Hak DJ, Hayda R, Alkhoury D, Schmidt AH, METRC: Defining incidence of acute compartment syndrome in the research setting: a proposed method from the PACS Study. J Orthop Trauma 36(Suppl 1):S26-S32, 2022.

Li R, Xiao L, Smirnova E, Cui E, Leroux A, Crainiceanu CM: Fixed-effects inference and tests of correlation for longitudinal functional data. Stat Med 41(17):3349-3364, 2022.

Qi G, Dutta D, Leroux A, Ray D, Muschelli J, Crainiceanu C, Chatterjee N: Genome-wide association studies of 27 accelerometry-derived physical activity measurements identified novel loci and genetic mechanisms. Genet Epidemiol 46(2):122-138, 2022.

Smirnova E, Mallow C, Muschelli J, Shao Y, Thiboutot J, Lam A, Rule AM, Crainiceanu C, Yarmus L: Predictive performance of selected breath volatile organic carbon compounds in stage 1 lung cancer. Transl Lung Cancer Res 11(6):1009-1018, 2022.

Cui E, Crainiceanu CM, Leroux A: Additive functional Cox model. J Comput Graph Stat 30(3):780-793, 2021.

Durfee AZ, Sheppard SM, Meier EL, Bunker L, Cui E, Crainiceanu C, Hillis AE: Explicit training to improve affective prosody recognition in adults with acute right hemisphere stroke. Brain Sci 11(5):667, 2021.

Eshaghzadeh Torbati M, Minhas DS, Ahmad G, O'Connor EE, Muschelli J, Laymon CM, Yang Z, Cohen AD, Aizenstein HJ, Klunk WE, Christian BT, Hwang SJ, Crainiceanu CM, Tudorascu DL: A multi-scanner neuroimaging data harmonization using RAVEL and ComBat. Neuroimage 245:118703, 2021.

Karas M, Straczkiewicz M, Fadel W, Harezlak J, Crainiceanu CM, Urbanek JK: Adaptive empirical pattern transformation (ADEPT) with application to walking stride segmentation. Biostatistics 22(2):331-347, 2021.

Karas M, Urbanek JK, Illiano VP, Bogaarts G, Crainiceanu CM, Dorn JF: Estimation of free-living walking cadence from wrist-worn sensor accelerometry data and its association with SF-36 quality of life scores. Physiol Meas 42(6):065006, 2021.

Kaufman MR, Dey D, Crainiceanu C, Dredze M: #MeToo and Google inquiries into sexual violence: a hashtag campaign can sustain information seeking. J Interpers Violence 36(19-20):9857-9867, 2021.

Lambe J, Fitzgerald KC, Murphy OC, Filippatou AG, Sotirchos ES, Kalaitzidis G, Vasileiou E, Pellegrini N, Ogbuokiri E, Toliver B, Luciano NJ, Davis S, Fioravante N, Kwakyi O, Risher H, Crainiceanu CM, Prince JL, Newsome SD, Mowry EM, Saidha S, Calabresi PA: Association of spectral-domain OCT with long-term disability worsening in multiple sclerosis. Neurology 96(16):e2058-e2069, 2021.

Leroux A, Rzasa-Lynn R, Crainiceanu C, Sharma T: Wearable devices: current status and opportunities in pain assessment and management. Digit Biomark 5(1):89-102, 2021.

Leroux A, Xu S, Kundu P, Muschelli J, Smirnova E, Chatterjee N, Crainiceanu C: Quantifying the predictive performance of objectively measured physical activity on mortality in the UK Biobank. J Gerontol A Biol Sci Med Sci 76(8):1486-1494, 2021.

Malone SK, Patterson F, Grunin L, Melkus GD, Riegel B, Punjabi N, Yu G, Urbanek J, Crainiceanu C, Pack A: Habitual physical activity patterns in a nationally representative sample of U.S. adults. Transl Behav Med 11(2):332-341, 2021.

Solhjoo S, Punjabi NM, Ivanescu AE, Crainiceanu C, Gaynanova I, Wicken C, Buckenmaier C 3rd, Haigney MC: Methadone destabilizes cardiac repolarization during sleep. Clin Pharmacol Ther 110(4):1066-1074, 2021.

Yu X, Hao L, Crainiceanu C, Leroux A: Occupational determinants of physical activity at work: Evidence from wearable accelerometer in 2005-2006 NHANES. SSM Popul Health 17:100989, 2021.

Benjamin-Neelon SE, Bai J, Ostbye T, Neelon B, Pate RR, Crainiceanu C: Physical activity and adiposity in a racially diverse cohort of US infants. Obesity 28(3):631-637, 2020.

Carass A, Roy S, Gherman A, Reinhold JC, Jesson A, Arbel T, Maier O, Handels H, Ghafoorian M, Platel B, Birenbaum A, Greenspan H, Pham DL, Crainiceanu CM, Calabresi PA, Prince JL, Roncal WRG, Shinohara RT, Oguz I: Evaluating white matter lesion segmentations with refined Sorensen-Dice analysis. Sci Rep 10(1):8242, 2020.

Crainiceanu CM, Crainiceanu A: The upstrap. Biostatistics 21(2):e164-e166, 2020.

Filippatou AG, Lambe J, Sotirchos ES, Fitzgerald KC, Aston A, Murphy OC, Pellegrini N, Fioravante N, Risher H, Ogbuokiri E, Kwakyi O, Toliver B, Davis S, Luciano N, Crainiceanu C, Prince JL, Mowry EM, Calabresi PA, Saidha S: Association of body mass index with longitudinal rates of retinal atrophy in multiple sclerosis. Mult Scler 26(7):843-854, 2020.

Gherman A, Muschelli J, Caffo B, Crainiceanu C: Rxnat: An open-source R package for XNAT-based repositories. Front Neuroinform 14:572068, 2020.

Hannawi Y, Muschelli J, Mulder M, Sharrock M, Storm C, Leithner C, Crainiceanu CM, Stevens RD: Postcardiac arrest neurological prognostication with quantitative regional cerebral densitometry. Resuscitation 154:101-109, 2020.

Heravi AS, Etzkorn LH, Urbanek JK, Crainiceanu CM, Punjabi NM, Ashikaga H, Brown TT, Budoff MJ, D'Souza G, Magnani JW, Palella FJ Jr, Berger RD, Wu KC, Post WS: HIV infection is associated with variability in ventricular repolarization: the Multicenter AIDS Cohort Study (MACS). Circulation 141(3):176-187, 2020.

Punjabi NM, Patil S, Crainiceanu C, Aurora RN: Variability and misclassification of sleep apnea severity based on multi-night testing. Chest 158(1):365-373, 2020.

Smirnova E, Leroux A, Cao Q, Tabacu L, Zipunnikov V, Crainiceanu C, Urbanek JK: The predictive performance of objective measures of physical activity derived from accelerometry data for 5-year all-cause mortality in older adults: National Health and Nutritional Examination Survey 2003-2006. J Gerontol A Biol Sci Med Sci 75(9):1779-1785, 2020.

Sotirchos ES, Gonzalez-Caldito N, Dewey BE, Fitzgerald KC, Glaister J, Filippatou A, Ogbuokiri E, Feldman S, Kwakyi O, Risher H, Crainiceanu C, Pham DL, Van Zijl PC, Mowry EM, Reich DS, Prince JL, Calabresi PA, Saidha S: Effect of disease-modifying therapies on subcortical gray matter atrophy in multiple sclerosis. Mult Scler 26(3):312-321, 2020.

Sotirchos ES, Gonzalez Caldito N, Filippatou A, Fitzgerald KC, Murphy OC, Lambe J, Nguyen J, Button J, Ogbuokiri E, Crainiceanu CM, Prince JL, Calabresi PA, Saidha S, International Multiple Sclerosis Visual System (IMSVISUAL) Consortium: Progressive multiple sclerosis is associated with faster and specific retinal layer atrophy. Ann Neurol 87(6):885-896, 2020.

Tabacu L, Ledbetter M, Leroux A, Crainiceanu C, Smirnova E: Quantifying the varying predictive value of physical activity measures obtained from wearable accelerometers on all-cause mortality over short to medium time horizons in NHANES 2003-2006. Sensors 21(1):E4, 2020.

Ding T, Cohen AD, O'Connor EE, Karim HT, Crainiceanu A, Muschelli J, Lopez O, Klunk WE, Aizenstein HJ, Krafty R, Crainiceanu CM, Tudorascu DL: An improved algorithm of white matter hyperintensity detection in elderly adults. Neuroimage Clin 25:102151, 2019.

Johns JT, Crainiceanu C, Zipunnikov V, Gellar J: Variable-domain functional principal component analysis. J Comp Graph Stat 28(4):993-1006, 2019.

Karas M, Bai J, Straczkiewicz M, Harezlak J, Glynn NW, Harris T, Zipunnikov V, Crainiceanu C, Urbanek JK: Accelerometry data in health research: challenges and opportunities. Stat Biosci 11(2):210-237, 2019.

Kudchadkar SR, Aljohani O, Johns J, Leroux A, Alsafi E, Jastaniah E, Gottschalk A, Shata NJ, Al-Harbi A, Gergen D, Nadkarni A, Crainiceanu C: Day-night activity in hospitalized children after major surgery: an analysis of 2271 hospital days. J Pediatr 209:190-197, 2019.

Leroux A, Di J, Smirnova E, McGuffey EJ, Cao Q, Bayatmokhtari E, Tabacu L, Zipunnikov V, Urbanek JK, Crainiceanu C: Organizing and analyzing the activity data in NHANES. Stat Biosci 11(2):262-287, 2019.

Merikangas KR, Swendsen J, Hickie IB, Cui L, Shou H, Merikangas AK, Zhang J, Lamers F, Crainiceanu C, Volkow ND, Zipunnikov V: Real-time mobile monitoring of the dynamic associations among motor activity, energy, mood, and sleep in adults with bipolar disorder. JAMA Psychiatry 76(2):190-198, 2019.

Muschelli J, Gherman A, Fortin JP, Avants B, Whitcher B, Clayden JD, Caffo BS, Crainiceanu CM: Neuroconductor: an R platform for medical imaging analysis. Biostatistics 20(2):218-239, 2019.

Nguyen J, Rothman A, Gonzalez N, Avornu A, Ogbuokiri E, Balcer LJ, Galetta SL, Frohman EM, Frohman T, Crainiceanu C, Calabresi PA, Saidha S: Macular ganglion cell and inner plexiform layer thickness is more strongly associated eith visual function in multiple sclerosis than Bruch membrane opening-minimum rim width or peripapillary retinal nerve fiber layer thicknesses. J Neuroophthalmol 39(4):444-450, 2019.

Oh J, Ontaneda D, Azevedo C, Klawiter EC, Absinta M, Arnold DL, Bakshi R, Calabresi PA, Crainiceanu C, ..., Shinohara RT, et al: Imaging outcome measures of neuroprotection and repair in MS: A consensus statement from NAIMS. Neurology 92(11):519-533, 2019.

Rothman A, Murphy OC, Fitzgerald KC, Button J, Gordon-Lipkin E, Ratchford JN, Newsome SD, Mowry EM, Sotirchos ES, Syc-Mazurek SB, Nguyen J, Caldito NG, Balcer LJ, Frohman EM, Frohman TC, Reich DS, Crainiceanu C, Saidha S, Calabresi PA: Retinal measurements predict 10-year disability in multiple sclerosis. Ann Clin Transl Neurol 6(2):222-232, 2019.

Sotirchos ES, Fitzgerald KC, Crainiceanu CM: Reporting of R2 statistics for mixed-effects regression models. JAMA Neurol 76(4):507, 2019.

Aurora RN, Crainiceanu C, Gottlieb DJ, Kim JS, Punjabi NM: Obstructive sleep apnea during REM sleep and cardiovascular disease. Am J Respir Crit Care Med 197(5):653-660, 2018.

Bai J, Sun Y, Schrack JA, Crainiceanu CM, Wang MC: A two-stage model for wearable device data. Biometrics 74(2):744-752, 2018.

Caldito NG, Saidha S, Sotirchos ES, Dewey BE, Cowley NJ, Glaister J, Fitzgerald KC, Al-Louzi O, Nguyen J, Rothman A, Ogbuokiri E, Fioravante N, Feldman S, Kwakyi O, Risher H, Kimbrough D, Frohman TC, Frohman E, Balcer L, Crainiceanu C, Van Zijl PCM, Mowry EM, Reich DS, Oh J, Pham DL, Prince J, Calabresi PA: Brain and retinal atrophy in African-Americans versus Caucasian-Americans with multiple sclerosis: a longitudinal study. Brain 141(11):3115-3129, 2018.

Chen OY, Crainiceanu C, Ogburn EL, Caffo BS, Wager TD, Lindquist MA: High-dimensional multivariate mediation with application to neuroimaging data. Biostatistics 19(2):121-136, 2018.

Grau-Perez M, Navas-Acien A, Galan-Chilet I, Briongos-Figuero LS, Morchon-Simon D, Bermudez JD, Crainiceanu CM, de Marco G, Rentero-Garrido P, Garcia-Barrera T, Gomez-Ariza JL, Casasnovas JA, Martin-Escudero JC, Redon J, Chaves FJ, Tellez-Plaza M: Arsenic exposure, diabetes-related genes and diabetes prevalence in a general population from Spain. Environ Pollut 235:948-955, 2018.

Grigsby MR, Di J, Leroux A, Zipunnikov V, Xiao L, Crainiceanu C, Checkley W: Novel metrics for growth model selection. Emerg Themes Epidemiol 1 5:4, 2018.

Leroux A, Xiao L, Crainiceanu C, Checkley W: Dynamic prediction in functional concurrent regression with an application to child growth. Stat Med 37(8):1376-1388, 2018.

Muschelli J, Sweeney E, Crainiceanu CM: freesurfer: Connecting the Freesurfer software with R. F1000Res 7:599, 2018.

Nguyen J, Rothman A, Fitzgerald K, Whetstone A, Syc-Mazurek S, Aquino J, Balcer LJ, Frohman EM, Frohman TC, Crainiceanu C, Beier M, Newsome SD, Calabresi PA, Saidha S: Visual pathway measures are associated with neuropsychological function in multiple sclerosis. Curr Eye Res 43(7):941-948, 2018.

Oh J, Bakshi R, Calabresi PA, Crainiceanu C, Henry RG, Nair G, Papinutto N, Constable RT, Reich DS, Pelletier D, Rooney W, Schwartz D, Tagge I, Shinohara RT, Simon JH, Sicotte NL, NAIMS Cooperative Steering Committee: The NAIMS cooperative pilot project: Design, implementation and future directions. Mult Scler 24(13):1770-1772, 2018.

Park SY, Staicu AM, Xiao L, Crainiceanu CM: Simple fixed-effects inference for complex functional models. Biostatistics 19(2):137-152, 2018.

Schrack JA, Leroux A, Fleg JL, Zipunnikov V, Simonsick EM, Studenski SA, Crainiceanu C, Ferrucci L: Using heart rate and accelerometry to define quantity and intensity of physical activity in older adults. J Gerontol A Biol Sci Med Sci 73(5):668-675, 2018.

Smirnova E, Ivanescu A, Bai J, Crainiceanu CM: A practical guide to big data. Stat Probab Lett 136:25-29, 2018.

Urbanek JK, Spira AP, Di J, Leroux A, Crainiceanu C, Zipunnikov V: Epidemiology of objectively measured bedtime and chronotype in US adolescents and adults: NHANES 2003-2006. Chronobiol Int 35(3):416-434, 2018.

Urbanek JK, Zipunnikov V, Harris T, Crainiceanu C, Harezlak J, Glynn NW: Validation of gait characteristics extracted from raw accelerometry during walking against measures of physical function, mobility, fatigability, and fitness. J Gerontol A Biol Sci Med Sci 73(5):676-681, 2018.

Urbanek JK, Zipunnikov V, Harris T, Fadel W, Glynn N, Koster A, Caserotti P, Crainiceanu C, Harezlak J: Prediction of sustained harmonic walking in the free-living environment using raw accelerometry data. Physiol Meas 39(2):02NT02, 2018.

Xiao L, Li C, Checkley W, Crainiceanu C: Fast covariance estimation for sparse functional data. Stat Comput 28(3):511-522, 2018.

Frank Curriero (go to top of document)

Harfouche MN, Shields T, Curriero FC: Geospatial analysis of firearm injuries in an urban setting: Individual rather than community characteristics affect firearm injury risk. Am J Surg 225(6):1062-1068, 2023.

Hauser M, Kabuya JB, Mantus M, Kamavu LK, Sichivula JL, Matende WM, Fritschi N, Shields T, Curriero F, Kvit A, Chongwe G, Moss WJ, Ritz N, Ippolito MM: Malaria in refugee children resettled to a holoendemic area of sub-Saharan Africa. Clin Infect Dis 76(3):e1104-e1113, 2023.

Brooks MM, Siegel SD, Corrigan AE, Curriero FC: Aggregated spatial intensity as a method for estimating point-level exposures within area-level units: The case of tobacco retailer exposure in census tracts. Spat Spatiotemporal Epidemiol 41:100482, 2022.

Carr JB 2nd, McElheny KD, Corrigan A, Rowe D, Ma K, Curriero FC: The most common type, severity, and expected frequency of injuries vary by defensive position in professional baseball players. Am J Sports Med 50(9):2534-2541, 2022.

Chalmers PN, Mcelheny K, D'Angelo J, Rowe D, Ma K, Curriero FC, Kvit A, Erickson BJ: Effect of weather and game factors on injury rates in professional baseball players. Am J Sports Med 50(4):1130-1136, 2022.

Francis L, Perrin N, Curriero FC, Black MM, Allen JK: Food desert status of family child care homes: relationship to young children's food quality. Int J Environ Res Public Health 19(11):6393, 2022.

Fries B, Davis BJK, Corrigan AE, DePaola A, Curriero FC: Nested spatial and temporal modeling of environmental conditions associated with genetic markers of Vibrio parahaemolyticus in Washington State Pacific oysters. Front Microbiol 13:849336, 2022.

Haeberle HS, Ramkumar PN, Frantz TL, Jones GL, Curriero FC, Corrigan A, Soloff L, Schickendantz MS, Frangiamore SJ: Pectoralis muscle injuries in major and minor league baseball. J Shoulder Elbow Surg 31(8):e363-e368, 2022.

Kvik A, Rose J, Curriero FC, Crifasi CK, Pollack CE: The association between vacant housing demolition and safety and health in Baltimore, MD. Prev Med 164:107292, 2022.

Makhni MC, Curriero FC, Yeung CM, Leung E, Kvit A, Mroz T, Ahmad CS, Lehman RA Jr: Epidemiology of spine-related neurologic injuries in professional baseball players. Spine 47(6):E265-E271, 2022.

Shannon KL, Shields T, Ahmed S, Rahman H, Prue CS, Khyang J, Ram M, Haq MZ, Akter J, Alam MS, Glass GE, Nyunt MM, Sack DA, Sullivan DJ, Khan WA, Curriero FC: Temporal and spatial differences between symptomatic and asymptomatic malaria infections in the Chittagong Hill Districts, Bangladesh. Am J Trop Med Hyg 107(6):1210-1217, 2022.

Siegel SD, Brooks M, Bourke J, Curriero FC: Reducing exposure to tobacco retailers with residential zoning policy: insights from a geospatial analysis of Wilmington, Delaware. Cities Health 6(4):752-764, 2022.

Siegel SD, Brooks MM, Lynch SM, Sims-Mourtada J, Schug ZT, Curriero FC: Racial disparities in triple negative breast cancer: toward a causal architecture approach. Breast Cancer Res 24(1):37, 2022.

Siegel SD, Brooks MM, Sims-Mourtada J, Schug ZT, Leonard DJ, Petrelli N, Curriero FC: A population health assessment in a community cancer center catchment area: triple-negative breast cancer, alcohol use, and obesity in New Castle County, Delaware. Cancer Epidemiol Biomarkers Prev 31(1):108-116, 2022.

Tao XG, Curriero FC, Chee EM, Mahesh M: Updated standardized mortality ratio evaluation of disease risks of shipyard workers exposed to low dose ionizing radiation. J Occup Environ Med 64(4):e224-e230, 2022.

Brooks MM, Siegel SD, Curriero FC: Characterizing the spatial relationship between smoking status and tobacco retail exposure: implications for policy development and evaluation. Health Place 68:102530, 2021.

Conway JJ, Curriero FC, Camp CL, Toresdahl BG, Coleman S, Kinderknecht JJ: Time out of play due to illness in major and minor league baseball. Clin J Sport Med 31(3):e137-e143, 2021.

Curriero FC, Wychgram C, Rebman AW, Corrigan AE, Kvit A, Shields T, Aucott JN: The Lyme and Tickborne Disease Dashboard: A map-based resource to promote public health awareness and research collaboration. PLoS One 16(12):e0260122, 2021.

Davis BJK, Corrigan AE, Sun Z, Atherly E, DePaola A, Curriero FC: A case-control analysis of traceback investigations for Vibrio parahaemolyticus infections (vibriosis) and pre-harvest environmental conditions in Washington State, 2013-2018. Sci Total Environ 752:141650, 2021.

Fakunle DO, Curriero FC, Leaf PJ, Furr-Holden DM, Thorpe RJ: Black, white, or green? The effects of racial composition and socioeconomic status on neighborhood-level tobacco outlet density. Ethn Health 26(7):1012-1027, 2021.

Fletcher KM, Espey J, Grossman MK, Sharpe JD, Curriero FC, Wilt GE, Sunshine G, Moreland A, Howard-Williams M, Ramos JG, Giuffrida D, Garcia MC, Hartnett WM, Foster S: Social vulnerability and county stay-at-home behavior during COVID-19 stay-at-home orders, United States, April 7-April 20, 2020. Ann Epidemiol 64:76-82, 2021.

Frantz T, Ramkumar PN, Frangiamore S, Jones G, Soloff L, Kvit A, Curriero FC, Schickendantz M: Epidemiology of acromioclavicular joint injuries in professional baseball: analysis from the Major League Baseball Health and Injury Tracking System. J Shoulder Elbow Surg 30(1):127-133, 2021.

Green G, Pollack Porter KM, Kvit A, Conte S, D'Angelo J, Valadka A, Curriero FC: Examining batting performance after a sports-related concussion among Major League Baseball position players. Am J Sports Med 49(3):790-797, 2021.

Green GA, Porter KP, Conte S, Valadka AB, Soloff L, Curriero FC: Preventing concussions from foul tips and backswings in professional baseball: catchers' perceptions of and experiences with conventional and hockey-style masks. Clin J Sport Med 31(1):e1-e7, 2021.

Guemes A, Ray S, Aboumerhi K, Desjardins MR, Kvit A, Corrigan AE, Fries B, Shields T, Stevens RD, Curriero FC, Etienne-Cummings R: A syndromic surveillance tool to detect anomalous clusters of COVID-19 symptoms in the United States. Sci Rep 11(1):4660, 2021.

Siegel SD, Brooks M, Curriero FC: Operationalizing the population health framework: clinical characteristics, social context, and the built environment. Popul Health Manag 24(4):454-462, 2021.

Siegel SD, Brooks M, Ragozine-Bush HE, Schnoll RA, Curriero FC: The co-occurrence of smoking and alcohol use disorder in a hospital-based population: Applying a multimorbidity framework using geographic information system methods. Addict Behav 118:106883, 2021.

Bhondoekhan FRP, Searle KM, Hamapumbu H, Lubinda M, Matoba J, Musonda M, Katowa B, Shields TM, Kobayashi T, Norris DE, Curriero FC, Stevenson JC, Thuma PE, Moss WJ, Southern and Central Africa International Centers of Excellence for Malaria Research: Improving the efficiency of reactive case detection for malaria elimination in southern Zambia: a cross-sectional study. Malar J 19(1):175, 2020.

Hultman K, Szukics PF, Grzenda A, Curriero FC, Cohen SB: Gastrocnemius injuries in professional baseball players: an epidemiological study. Am J Sports Med 48(10):2489-2498, 2020.

Johnson KA, Jones-Smith J, Curriero FC, Cheskin LJ, Benjamin-Neelon SE, Perin J, Caicedo MR, Thornton RLJ: Low-income black and Hispanic children's neighborhood food environments and weight trajectories in early childhood. Acad Pediatr 20(6):784-792, 2020.

Rubenstein WJ, Allahabadi S, Curriero F, Feeley BT, Lansdown DA: Fracture epidemiology in professional baseball from 2011 to 2017. Orthop J Sports Med 8(8):2325967120943161, 2020.

Spaur M, Davis BJK, Kivitz S, DePaola A, Bowers JC, Curriero FC, Nachman KE: A systematic review of post-harvest interventions for Vibrio parahaemolyticus in raw oysters. Sci Total Environ 745:140795, 2020.

Stojan G, Kvit A, Curriero FC, Petri M: A spatiotemporal analysis of organ-specific lupus flares in relation to atmospheric variables and fine particulate matter pollution. Arthritis Rheumatol 72(7):1134-1142, 2020.

Tieu HV, Koblin BA, Latkin C, Curriero FC, Greene ER, Rundle A, Frye V: Neighborhood and network characteristics and the HIV care continuum among gay, bisexual, and other men who have sex with men. J Urban Health 97(5):592-608, 2020.

Berman JD, Jin L, Bell ML, Curriero FC: Developing a geostatistical simulation method to inform the quantity and placement of new monitors for a follow-up air sampling campaign. J Expo Sci Environ Epidemiol 29(2):248-257, 2019.

Davis BJK, Curriero FC: Development and evaluation of geostatistical methods for non-Euclidean-based spatial covariance matrices. Math Geosci 51(6):767-791, 2019.

Davis BJK, Jacobs JM, Zaitchik B, DePaola A, Curriero FC: Vibrio parahaemolyticus in the Chesapeake Bay: Operational in situ prediction and forecast models can benefit from inclusion of lagged water quality measurements. Appl Environ Microbiol 85(17):e01007-19, 2019.

DePriest K, Butz A, Curriero FC, Perrin N, Gross D: Associations among neighborhood greenspace, neighborhood violence, and children's asthma control in an urban city. Ann Allergy Asthma Immunol 123(6):608-610, 2019.

DePriest KN, Shields TM, Curriero FC: Returning to our roots: the use of geospatial data for nurse-led community research. Res Nurs Health 42(6):467-475, 2019.

Esquivel A, Freehill MT, Curriero FC, Rand KL, Conte S, Tedeschi T, Lemos SE: Analysis of non-game injuries in major league baseball. Orthop J Sports Med 7(12):2325967119888499, 2019.

Fakunle DO, Thorpe RJ Jr, Furr-Holden CDM, Curriero FC, Leaf PJ: Does tobacco outlet inequality extend to high-white mid-Atlantic jurisdictions? A study of socioeconomic status and density. J Racial Ethn Health Disparities 6(2):409-418, 2019.

Feingold BJ, Augustino KL, Curriero FC, Udani PC, Ramsey KM: Evaluation of methicillin-resistant Staphylococcus aureus carriage and high livestock production areas in North Carolina through active case finding at a tertiary care hospital. Int J Environ Res Public Health 16(18):E3418, 2019.

Flynn A, Davis BJK, Atherly E, Olson G, Bowers JC, DePaola A, Curriero FC: Associations of environmental conditions and Vibrio parahaemolyticus genetic markers in Washington State Pacific oysters. Front Microbiol 10:2797, 2019.

Hansel NN, Romero KM, Pollard SL, Bose S, Psoter KJ, J Underhill L, Johnson C, Williams D, Curriero FC, Breysse P, Koehler K, Checkley W, GASP Study Investigators: Ambient air pollution and variation in multiple domains of asthma morbidity among Peruvian children. Ann Am Thorac Soc 16(3):348-355, 2019.

Jarman MP, Pollack Porter K, Curriero FC, Castillo RC: Factors mediating demographic determinants of injury mortality. Ann Epidemiol 34:58-64, 2019.

Klassen AC, Hsieh S, Pankiewicz A, Kabbe A, Hayes J, Curriero F: The association of neighborhood-level social class and tobacco consumption with adverse lung cancer characteristics in Maryland. Tob Induc Dis 17:06, 2019.

Kvit A, Davis B, Jacobs J, Curriero FC: Adjusted, non-Euclidean cluster detection of Vibrio parahaemolyticus in the Chesapeake Bay, USA. Geospat Health 14(2):10.4081, 2019.

Majd E, McCormack M, Davis M, Curriero F, Berman J, Connolly F, Leaf P, Rule A, Green T, Clemons-Erby D, Gummerson C, Koehler K: Indoor air quality in inner-city schools and its associations with building characteristics and environmental factors. Environ Res 170:83-91, 2019.

Nesoff ED, Milam AJ, Pollack KM, Curriero FC, Bowie JV, Knowlton AR, Gielen AC, Furr-Holden DM: Neighbourhood alcohol environment and injury risk: a spatial analysis of pedestrian injury in Baltimore City. Inj Prev 25(5):350-356, 2019.

Sapkota A, Murtugudde R, Curriero FC, Upperman CR, Ziska L, Jiang C: Associations between alteration in plant phenology and hay fever prevalence among US adults: Implication for changing climate. PLoS One 14(3):e0212010, 2019.

Trangenstein PJ, Curriero FC, Jennings JM, Webster D, Latkin C, Eck RH, Jernigan DH: Methods for evaluating the association between alcohol outlet density and violent crime. Alcohol Clin Exp Res 43(8):1714-1726, 2019.

Berman JD, McCormack MC, Koehler KA, Connolly F, Clemons-Erby D, Davis MF, Gummerson C, Leaf PJ, Jones TD, Curriero FC: School environmental conditions and links to academic performance and absenteeism in urban, mid-Atlantic public schools. Int J Hyg Environ Health 221(5):800-808, 2018.

Bose S, Romero K, Psoter KJ, Curriero FC, Chen C, Johnson CM, Kaji D, Breysse PN, Williams DL, Ramanathan M, Checkley W, Hansel NN: Association of traffic air pollution and rhinitis quality of life in Peruvian children with asthma. PLoS One 13(3):e0193910, 2018.

DeLuca NM, Zaitchik BF, Curriero FC: Can multispectral information improve remotely sensed estimates of total suspended solids? A statistical study in Chesapeake Bay. Remote Sens 10(9):1393, 2018.

Jarman MP, Curriero FC, Haut ER, Pollack Porter K, Castillo RC: Associations of distance to trauma care, community income, and neighborhood median age with rates of injury mortality. JAMA Surg 153(6):535-543, 2018.

Jarman MP, Haut ER, Curriero FC, Castillo RC: Mapping areas with concentrated risk of trauma mortality: a first step toward mitigating geographic and socioeconomic disparities in trauma. J Trauma Acute Care Surg 85(1):54-61, 2018.

Nesoff ED, Milam AJ, Pollack KM, Curriero FC, Bowie JV, Gielen AC, Furr-Holden DM: Novel methods for environmental assessment of pedestrian injury: creation and validation of the inventory for pedestrian safety infrastructure. J Urban Health 95(2):208-221, 2018.

Trangenstein PJ, Curriero FC, Webster D, Jennings JM, Latkin C, Eck R, Jernigan DH: Outlet type, access to alcohol, and violent crime. Alcohol Clin Exp Res 42(11):2234-2245, 2018.

Abhirup Datta (go to top of document)

Fiksel J, Gilbert B, Wilson E, Kalter H, Kante A, Akum A, Blau D, Bassat Q, Macicame I, Samo Gudo E, Black R, Zeger S, Amouzou A, Datta A: Correcting for verbal autopsy misclassification bias in cause-specific mortality estimates. Am J Trop Med Hyg 108(5_Suppl):66-77, 2023.

Gilbert B, Fiksel J, Wilson E, Kalter H, Kante A, Akum A, Blau D, Bassat Q, Macicame I, Samo Gudo E, Black R, Zeger S, Amouzou A, Datta A: Multi-cause calibration of verbal autopsy-based cause-specific mortality estimates of children and neonates in Mozambique. Am J Trop Med Hyg 108(5_Suppl):78-89, 2023.

Lin JJY, Buehler C, Datta A, Gentner DR, Koehler K, Zamora ML: Laboratory and field evaluation of a low-cost methane sensor and key environmental factors for sensor calibration. Environ Sci Atmos 3(4):683-694, 2023.

Macicame I, Kante AM, Wilson E, Gilbert B, Koffi A, Nhachungue S, Monjane C, Duce P, Adriano A, Chicumbe S, Jani I, Kalter HD, Datta A, Zeger S, Black RE, Gudo ES, Amouzou A, COMSA-Mozambique Study Team: Countrywide mortality surveillance for action in Mozambique: results from a national sample-based vital statistics system for mortality and cause of death. Am J Trop Med Hyg 108(5_Suppl):5-16, 2023.

Wikle CK, Datta A, Vyasa Hari B, Boone EL, Sahoo I, Kavila I, Castruccio S, Simmons SJ, Burr WS, Chang W: An illustration of model agnostic explainability methods applied to environmental data. Environmetrics 34(1):e2772, 2023.

Datta A: Nearest-neighbor sparse Cholesky matrices in spatial statistics. WIREs Comp Stat 14(5):e1574, 2022.

Dey D, Datta A, Banerjee S: Graphical Gaussian process models for highly multivariate spatial data. Biometrika 109(4):993-1014, 2022.

Fiksel J, Zeger S, Datta A: A transformation-free linear regression for compositional outcomes and predictors. Biometrics 78(3):974-987, 2022.

Finley AO, Datta A, Banerjee S: spNNGP R package for nearest neighbor Gaussian process models. J Stat Softw 103(5):1-40, 2022.

Gao L, Datta A, Banerjee S: Hierarchical multivariate directed acyclic graph autoregressive models for spatial diseases mapping. Stat Med 41(16):3057-3075, 2022.

Patton A, Datta A, Zamora ML, Buehler C, Xiong F, Gentner DR, Koehler K: Non-linear probabilistic calibration of low-cost environmental air pollution sensor networks for neighborhood level spatiotemporal exposure assessment. J Expo Sci Environ Epidemiol 32(6):908-916, 2022.

Saha A, Datta A, Banerjee S: Scalable predictions for spatial probit linear mixed models using nearest neighbor Gaussian processes. J Data Sci 20(4): 533-544, 2022.

Seal S, Datta A, Basu S: Efficient estimation of SNP heritability using Gaussian predictive process in large scale cohort studies. PLoS Genet 8(4):e1010151, 2022.

Wang G, Datta A, Lindquist MA: Bayesian functional registration of fMRI activation maps. Ann Appl Stat 16 (3), 1676-1699, 2022.

Zamora ML, Buehler C, Lei H, Datta A, Xiong F, Gentner DR, Koehler K: Evaluating the performance of using low-cost sensors to calibrate for cross-sensitivities in a multipollutant network. ACS ES&T Engineering 2(5):780-793, 2022.

Datta A, Fiksel J, Amouzou A, Zeger SL: Regularized Bayesian transfer learning for population-level etiological distributions. Biostatistics 22(4):836-857, 2021.

Datta A, Pita A, Rao A, Sithole B, Mnisi Z, Baral S: Size estimation of key populations in the HIV epidemic in eSwatini using incomplete and misaligned capture-recapture data. Ann Appl Stat 14(3):1207-1241, 2020.

Datta A, Saha A, Zamora ML, Buehler C, Hao L, Xiong F, Gentner DR, Koehler K: Statistical field calibration of a low-cost PM 2.5 monitoring network in Baltimore. Atmos Environ 242:117761, 2020.

Datta A, Banerjee S, Hodges JS, Gao L: Spatial disease mapping using Directed Acyclic Graph Auto-Regressive (DAGAR) models. Bayesian Anal 14(4):1221-1244, 2019.

Datta A, Lin W, Rao A, Diouf D, Kouame A, Edwards JK, Bao L, Louis TA, Baral S: Bayesian estimation of MSM population size in Cote d'Ivoire. Stat Public Policy 6(1):1-13, 2019.

Datta A, Zou H, Banerjee S: Bayesian high-dimensional regression for change point analysis. Statistics and Its Interface 12(2):253-264, 2019.

Finley AO, Datta A, Cook BD, Morton DC, Andersen HE, Banerjee S: Efficient algorithms for Bayesian nearest neighbor Gaussian processes. J Comp Graph Stat 28(2):401-414, 2019.

Heaton MJ, Datta A, Finley AO, Furrer R, Guinness J, Guhaniyogi R, Gerber F, Gramacy RB, Hammerling D, Katzfuss M, Lindgren F, Nychka DW, Sun F, Zammit-Mangion: A case study competition among methods for analyzing large spatial data. J Agric Biol Environ Stat 24(3):398-425, 2019.

Edwards JK, Hileman S, Donastorg Y, Zadrozny S, Baral S, Hargreaves JR, Fearon E, Zhao J, Datta A, Weir SS: Estimating sizes of key populations at the national level: considerations for study design and analysis. Epidemiology 29(6):795-803, 2018.

Saha A, Datta A: BRISC: bootstrap for rapid inference on spatial covariances. Stat 7(1):e184, 2018.

Marie Diener-West (go to top of document)

Bothun ED, Repka MX, Kraker RT, Wu R, Leske DA, Hatt SR, Li Z, Freedman SF, Astle WF, Cotter SA, Holmes JM, Pediatric Eye Disease Investigator Group (includes Diener-West M): Incidence of glaucoma-related adverse events in the first 5 years after pediatric lensectomy. JAMA Ophthalmol 141(4):324-331, 2023.

Jenewein EC, Cotter S, Roberts T, Kulp M, Mitchell GL, Jones-Jordan LA, Chen AM, Hopkins K, Huang K, Amster D, Fecho G, Tyler J, Meiyeppen S, Scheiman M, Convergence Insufficiency Treatment Trial-Attention and Reading Trial (CITT-ART) Investigator Group (includes Diener-West M): Vergence/accommodative therapy for symptomatic convergence insufficiency in children: time course of improvements in convergence function. Ophthalmic Physiol Opt 43(1):105-115, 2023.

Periyakoil D, Periyakoil P, Tee CA, Spanos CJ, Diener-West M, Tee M, Prata N: Are there differences between the stress responses of Philippine men and women to the COVID-19 pandemic? Int J Environ Res Public Health 20(3):2326, 2023.

Coffman VR, Hall DJ, Pisanic N, Wiesner-Friedman C, Rogers S, Rule A, McCormack M, Diener-West M, Davis MF, Heaney CD: Assessing residential exposure to microbes from industrial hog operations in rural North Carolina: methods and lessons learned. Prog Community Health Partnersh 16(1):61-72, 2022.

Freedman SF, Hercinovic A, Wallace DK, Kraker RT, Li Z, Bhatt AR, Boente CS, Crouch ER, Hubbard GB, Rogers DL, VanderVeen D, Yang MB, Cheung NL, Cotter SA, Holmes JM, Pediatric Eye Disease Investigator Group (includes Diener-West M): Low- and very low-dose bevacizumab for retinopathy of prematurity: reactivations, additional treatments, and 12-month outcomes. Ophthalmology 129(10):1120-1128, 2022.

Kulp MT, Sinnott LT, Cotter SA, Borsting E, Toole AJ, Chen AM, Jenewein EC, Morrison AM, Plaumann MD, Jones-Jordan L, Mitchell GL, Tea YC, Scheiman MM, Convergence Insufficiency Treatment Trial (CITT) Investigator Group, Convergence Insufficiency Treatment Trial - Attention, Reading Trial (CITT-ART) Investigator Group (includes Diener-West M): Does coexisting accommodative dysfunction impact clinical convergence measures, symptoms and treatment success for symptomatic convergence insufficiency in children? Ophthalmic Physiol Opt 42(1):59-70, 2022.

Li Y, He Y, Falzon I, Fairbourn B, Tingey S, Imrey PB, Radeva MK, Beck GJ, Gassman JJ, Roy-Chaudhury P, Berceli SA, Cheung AK, Shiu YT, Hemodialysis Fistula Maturation Study (includes Diener-West M): Dynamic remodeling of human arteriovenous fistula wall obtained from magnetic resonance imaging during the first 6 months after creation. Kidney Int Rep 7(8):1905-1909, 2022.

Pineles SL, Henderson RJ, Repka MX, ..., Pediatric Eye Disease Investigator Group (includes Diener-West M): The Pediatric Optic Neuritis Prospective Outcomes Study: Two-year results. Ophthalmology 129(8):856-864, 2022.

Repka MX, Dean TW, Kraker RT, ..., Pediatric Eye Disease Investigator Group (includes Diener-West M): Visual acuity and ophthalmic outcomes 5 years after cataract surgery among children younger than 13 years. JAMA Ophthalmol 140(3):269-276, 2022.

Zia N, Bachani AM, Kajungu D, Galiwango E, Loeb M, Diener-West M, Wegener S, Pariyo G, Hyder AA: Understanding child disability: Factors associated with child disability at the Iganga-Mayuge Health and Demographic Surveillance Site in Uganda. PLoS One 17(4):e0267182, 2022.

Chen AM, Roberts TL, Cotter SA, Kulp MT, Sinnott LT, Borsting EJ, Tea YC, Jones-Jordan LA, Hertle R, Mitchell GL, Eugene Arnold L, Chase C, Scheiman MM, Convergence Insufficiency Treatment Trial - Attention and Reading Trial (CITT-ART) Investigator Group (includes Diener-West M): Effectiveness of vergence/accommodative therapy for accommodative dysfunction in children with convergence insufficiency. Ophthalmic Physiol Opt 41(1):21-32, 2021.

Coffman VR, Hall DJ, Pisanic N, Love DC, Nadimpalli M, McCormack M, Diener-West M, Davis MF, Heaney CD: Self-reported work activities, eye, nose, and throat symptoms, and respiratory health outcomes among an industrial hog operation worker cohort, North Carolina, USA. Am J Ind Med 64(5):403-413, 2021.

Coffman VR, Hall DJ, Pisanic N, Nadimpalli M, McCormack M, Diener-West M, Davis MF, Heaney CD: Personal protective equipment use during industrial hog operation work activities and acute lung function changes in a prospective worker cohort, North Carolina 2014-2015. Am J Ind Med 64(8):688-698, 2021.

Kraker RT, Wallace DK, Beck RW, Saunders CT, Lorenzi E, Melia BM, Li Z, Pediatric Eye Disease Investigator Group (includes Diener-West M): Choice of dose level for a randomized clinical trial of low-dose bevacizumab vs laser for type 1 retinopathy of prematurity. JAMA Ophthalmol 139(10):1143-1144, 2021.

Oh J, Chen M, Cybulsky K, Suthiphosuwan S, Seyman E, Dewey B, Diener-West M, van Zijl P, Prince J, Reich DS, Calabresi PA: Five-year longitudinal changes in quantitative spinal cord MRI in multiple sclerosis. Mult Scler 27(4):549-558, 2021.

Writing Committee for the Pediatric Eye Disease Investigator Group (PEDIG) (includes Diener-West M), Bothun ED, Repka MX, Dean TW, Gray ME, Lenhart PD, Li Z, Morrison DG, Wallace DK, Kraker RT, Cotter SA, Holmes JM: Visual outcomes and complications after lensectomy for traumatic cataract in children. JAMA Ophthalmol 139(6):647-653, 2021.

Zia N, Bachani AM, Kajungu D, Galiwango E, Loeb M, Diener-West M, Wegener S, Pariyo G, Hyder AA: Measuring child functioning: Assessing correlation and agreement between caregiver and child responses at the Iganga-Mayuge health and demographic surveillance site in Uganda. Disabil Health J 14(2):101022, 2021.

McAdams-DeMarco MA, Chu NM, Steckel M, Kunwar S, Gonzalez Fernandez M, Carlson MC, Fine DM, Appel LJ, Diener-West M, Segev DL: Interventions Made to Preserve Cognitive Function Trial (IMPCT) study protocol: a multi-dialysis center 2x2 factorial randomized controlled trial of intradialytic cognitive and exercise training to preserve cognitive function. BMC Nephrol 21(1):383, 2020.

Zia N, Loeb M, Kajungu D, Galiwango E, Diener-West M, Wegener S, Pariyo G, Hyder AA, Bachani AM: Adaptation and validation of UNICEF/Washington group child functioning module at the Iganga-Mayuge health and demographic surveillance site in Uganda. BMC Public Health 20(1):1334, 2020.

Dezube R, Jennings MT, Rykiel M, Diener-West M, Boyle MP, Chmiel JF, Dasenbrook EC: Eradication of persistent methicillin-resistant Staphylococcus aureus infection in cystic fibrosis. J Cyst Fibros 18(3):357-363, 2019.

Kubiak RW, Zelnick LR, Hoofnagle AN, Alpers CE, Terry CM, Shiu YT, Cheung AK, de Boer IH, Robinson-Cohen C, Allon M, Dember LM, Feldman HI, Himmelfarb J, Huber TS, Roy-Chaudhury P, Vazquez MA, Kusek JW, Beck GJ, Imrey PB, Kestenbaum B, Hemodialysis Fistula Maturation Study Group (includes Diener-West M): Mineral metabolism disturbances and arteriovenous fistula maturation. Eur J Vasc Endovasc Surg 57(5):719-728, 2019.

Nelson CS, Vera Cruz D, Su M, Xie G, Vandergrift N, Pass RF, Forman M, Diener-West M, Koelle K, Arav-Boger R, Permar SR: Intrahost dynamics of human cytomegalovirus variants acquired by seronegative glycoprotein B vaccinees. J Virol 93(5):e01695-18, 2019.

Resnick BA, Morlock L, Diener-West M, Stuart EA, Spencer M, Sharfstein JM: PH WINS and the future of public health education. J Public Health Manag Pract 25(Suppl 2):S10-S12, 2019.

Varadaraj V, Ranjit A, Nwadiuko J, Canner J, Diener-West M, Schneider EB, Thyagarajan SP, Shrestha R, Nagarajan N: Towards diaspora-driven research capacity strengthening in low- and middle-income countries: results from India and Nepal. Int Health 11(3):221-228, 2019.

Allon M, Imrey PB, Cheung AK, Radeva M, Alpers CE, Beck GJ, Dember LM, Farber A, Greene T, Himmelfarb J, Huber TS, Kaufman JS, Kusek JW, Roy-Chaudhury P, Robbin ML, Vazquez MA, Feldman HI, Hemodialysis Fistula Maturation (HFM) Study Group (includes Diener-West M): Relationships between clinical processes and arteriovenous fistula cannulation and maturation: a multicenter prospective cohort study. Am J Kidney Dis 71(5):677-689, 2018.

Duval-Arnould JM, Newton HM, McNamara L, Engorn BM, Jones K, Bernier M, Dodge P, Salamone C, Bhalala U, Jeffers JM, Engineer L, Diener-West M, Hunt EA: Design and deployment of a pediatric cardiac arrest surveillance system. Crit Care Res Pract 2018:9187962, 2018.

Robbin ML, Greene T, Allon M, Dember LM, Imrey PB, Cheung AK, Himmelfarb J, Huber TS, Kaufman JS, Radeva MK, Roy-Chaudhury P, Shiu YT, Vazquez MA, Umphrey HR, Alexander L, Abts C, Beck GJ, Kusek JW, Feldman HI, Hemodialysis Fistula Maturation Study Group (includes Diener-West M): Prediction of arteriovenous fistula clinical maturation from postoperative ultrasound measurements: findings from the Hemodialysis Fistula Maturation Study. J Am Soc Nephrol 29(11):2735-2744, 2018.

Straatsma BR, Diener-West M, Caldwell R, Engstrom RE, Collaborative Ocular Melanoma Study Group: Mortality after deferral of treatment or no treatment for choroidal melanoma. Indian J Ophthalmol 66(10):1395-1400, 2018.

Wang W, Alonso A, Soliman EZ, O'Neal WT, Calkins H, Chen LY, Diener-West M, Szklo M: Relation of resting heart rate to incident atrial fibrillation (from ARIC [Atherosclerosis Risk in Communities] Study). Am J Cardiol 121(10):1169-1176, 2018.

Constantine Frangakis (go to top of document)

Smith MK, Latkin CA, Hutton HE, Chander G, Enns EA, Ha TV, Frangakis C, Sripaipan T, Go VF: Longitudinal trajectories of alcohol use in Vietnamese adults with hazardous alcohol use and HIV. AIDS Behav 27(6):1972-1980, 2023.

Alexandris AS, Wang Y, Frangakis CE, Lee Y, Ryu J, Alam Z, Koliatsos VE: Long-term changes in axon calibers after injury: observations on the mouse corticospinal tract. Int J Mol Sci 23(13):7391, 2022.

Frangakis C, Kohler B, Georgiades CS: CT-guided celiac ganglion block for neurogenic gastrointestinal dysmotility. J Vasc Interv Radiol 33(12):1492-1499, 2022.

Herrmann O, Ficek B, Webster KT, Frangakis C, Spira AP, Tsapkini K: Sleep as a predictor of tDCS and language therapy outcomes. Sleep 45(3):zsab275, 2022.

Nguyen MX, Hershow RB, Blackburn NA, Bui QX, Latkin CA, Hutton H, Chander G, Dowdy D, Lancaster KE, Frangakis C, Sripaipan T, Tran HV, Go VF: "I refused to drink but they still forced me": A mixed-methods approach to understanding the pathways to reduce alcohol use among Vietnamese people with HIV. Soc Sci Med 301:114902, 2022.

Nguyen MX, Reyes HL, Pence BW, Muessig KE, Hutton HE, Latkin CA, Dowdy D, Chander G, Lancaster KE, Frangakis C, Sripaipan T, Tran HV, Go VF: Effects of two alcohol reduction interventions on depression and anxiety symptoms of ART clients in Vietnam. AIDS Behav 26(6):1829-1840, 2022.

Blackburn NA, Go VF, Bui Q, Hutton H, Tampi RP, Sripaipan T, Ha TV, Latkin CA, Golden S, Golin C, Chander G, Frangakis C, Gottfredson N, Dowdy DW: The cost-effectiveness of adapting and implementing a brief intervention to target frequent alcohol use among persons with HIV in Vietnam. AIDS Behav 25(7):2108-2119, 2021.

Frangakis C, Sohn JH, Bas A, Chapiro J, Schernthaner RE, Lin M, Hamilton JP, Pawlik TM, Hong K, Duran R: Longitudinal analysis of the effect of repeated transarterial chemoembolization for liver cancer on portal venous pressure. Front Oncol 11:639235, 2021.

Hershow RB, Reyes HLMN, Ha TV, Chander G, Mai NVT, Sripaipan T, Dowdy DW, Latkin C, Hutton HE, Pettifor A, Maman S, Frangakis C, Go VF: Evaluating the effects of two alcohol reduction counseling interventions on intimate partner violence perpetration: secondary analysis of a three-arm randomized controlled trial among Vietnamese men with HIV. Addiction 116(10):2712-2723, 2021.

Kolarich A, Frangakis C, Yarchoan M, Hong K, Georgiades C: Transarterial chemoembolization in patients with hepatocellular carcinoma with intra-atrial tumor extension: imaging response and oncologic outcomes. J Vasc Interv Radiol 32(8):1203-1208, 2021.

Nguyen MX, McNaughton Reyes HL, Pence BW, Muessig K, Hutton HE, Latkin CA, Dowdy D, Chander G, Lancaster KE, Frangakis C, Sripaipan T, Ha Tran V, Go VF: The longitudinal association between depression, anxiety symptoms and HIV outcomes, and the modifying effect of alcohol dependence among ART clients with hazardous alcohol use in Vietnam. J Int AIDS Soc 24 Suppl 2:e25746, 2021.

Riello M, Frangakis CE, Ficek B, Webster KT, Desmond JE, Faria AV, Hillis AE, Tsapkini K: Neural correlates of letter and semantic fluency in primary progressive aphasia. Brain Sci 12(1):1, 2021.

Zhao Y, Ficek B, Webster K, Frangakis C, Caffo B, Hillis AE, Faria A, Tsapkini K: White matter integrity predicts electrical stimulation (tDCS) and language therapy effects in primary progressive aphasia. Neurorehabil Neural Repair 35(1):44-57, 2021.

Blackburn NA, Go VF, Bui Q, Hutton H, Tampi RP, Sripaipan T, Ha TV, Latkin C, Golden S, Golin C, Chander G, Frangakis C, Gottfredson N, Dowdy DW: Implementation of two alcohol reduction interventions among persons with hazardous alcohol use who are living with HIV in Thai Nguyen, Vietnam: a micro-costing analysis. Glob Health Action 13(1):1814035, 2020.

de Aguiar V, Zhao Y, Faria A, Ficek B, Webster KT, Wendt H, Wang Z, Hillis AE, Onyike CU, Frangakis C, Caffo B, Tsapkini K: Brain volumes as predictors of tDCS effects in primary progressive aphasia. Brain Lang 200:104707, 2020.

Frangakis CE: The method of envelopes to concisely calculate semiparametric efficient scores under parametric restrictions. Int J Biostat 17(1):1-5, 2020.

Go VF, Hutton HE, Ha TV, Chander G, Latkin CA, Mai NVT, Quynh BX, Nguyen V, Sripaipan T, Lancaster KE, Blackburn N, Hershow RB, Dowdy DW, Frangakis C: Effect of 2 integrated interventions on alcohol abstinence and viral suppression among Vietnamese adults with hazardous alcohol use and HIV: a randomized clinical trial. JAMA Netw Open 3(9):e2017115, 2020.

Hershow RB, Ha TV, Sripaipan T, Latkin C, Hutton HE, Chander G, Bui Q, Nguyen VQ, Frangakis C, Go VF: Perpetration of intimate partner violence among men living with HIV in northern Vietnam. AIDS Behav 24(9):2555-2571, 2020.

Hershow RB, Reyes HLM, Ha TV, Chander G, Mai NVT, Sripaipan T, Frangakis C, Dowdy DW, Latkin C, Hutton HE, Pettifor A, Maman S, Go VF: Alcohol use, depressive symptoms, and intimate partner violence perpetration: a longitudinal analysis among men with HIV in northern Vietnam. PLoS One 15(10):e0240674, 2020.

Lancaster KE, Hetrick A, Sripaipan T, Ha TV, Hutton HE, Chander G, Latkin CA, Dowdy D, Frangakis C, Quynh BX, Go VF: Alcohol abstinence stigma and alcohol use among HIV patients in Thai Nguyen, Vietnam. PLoS One 15(9):e0239330, 2020.

Morkos J, Porosnicu Rodriguez KA, Zhou A, Kolarich AR, Frangakis C, Rodriguez R, Georgiades CS: Percutaneous cryoablation for Stage 1 renal cell carcinoma: outcomes from a 10-year prospective study and comparison with matched cohorts from the National Cancer Database. Radiology 296(2):452-459, 2020.

Nguyen MX, Dowdy D, Latkin CA, Hutton HE, Chander G, Frangakis C, Lancaster KE, Sripaipan T, Bui QX, Tran HV, Go VF: Social support modifies the association between hazardous drinking and depression symptoms among ART clients in Vietnam. Drug Alcohol Depend 215:108249, 2020.

Qian T, Frangakis C, Yiannoutsos C: Double-sampling designs with application to PEPFAR. Stat Biosci 12(3):417-445, 2020.

Chockalingam L, Pence B, Frangakis CE, Ha TV, Latkin CA, Sripaipan T, Quan VM, Go VF: The relationship between health-related variables and increases in smoking among recently diagnosed HIV+ people who inject drugs in Vietnam. Addict Behav 95:118-124, 2019.

de Aguiar V, Zhao Y, Ficek BN, Webster K, Rofes A, Wendt H, Frangakis C, Caffo B, Hillis AE, Rapp B, Tsapkini K: Cognitive and language performance predicts effects of spelling intervention and tDCS in Primary Progressive Aphasia. Cortex 124:66-84, 2019.

Ehrhardt S, Porsteinsson AP, Munro CA, Rosenberg PB, Pollock BG, Devanand DP, Mintzer J, Rajji TK, Ismail Z, Schneider LS, Baksh SN, Drye LT, Avramopoulos D, Shade DM, Lyketsos CG, S-CitAD Research Group (includes Frangakis C): Escitalopram for agitation in Alzheimer's disease (S-CitAD): Methods and design of an investigator-initiated, randomized, controlled, multicenter clinical trial. Alzheimers Dement 15(11):1427-1436, 2019.

Fenner AS, Webster KT, Ficek BN, Frangakis CE, Tsapkini K: Written verb naming improves after tDCS over the left IFG in primary progressive aphasia. Front Psychol 10:1396, 2019.

Levintow SN, Pence BW, Ha TV, Le Minh N, Sripaipan T, Latkin CA, Vu PT, Quan VM, Frangakis C, Go VF: Depressive symptoms at HIV testing and two-year all-cause mortality among men who inject drugs in Vietnam. AIDS Behav 23(3):609-616, 2019.

Werner JD, Frangakis C, Ruck JM, Hong K, Philosophe B, Cameron AM, Saberi B, Gurakar A, Georgiades C: Neoadjuvant transarterial chemoembolization improves survival after liver transplant in patients with hepatocellular carcinoma. Exp Clin Transplant 17(5):638-643, 2019.

Brock M, Frangakis C, Georgiades CS: CT-guided, percutaneous ethanol sympatholysis for primary hyperhidrosis. Cardiovasc Intervent Radiol 41(3):477-482, 2018.

Ficek BN, Wang Z, Zhao Y, Webster KT, Desmond JE, Hillis AE, Frangakis C, Vasconcellos Faria A, Caffo B, Tsapkini K: The effect of tDCS on functional connectivity in primary progressive aphasia. Neuroimage Clin 19:703-715, 2018.

Levintow SN, Pence BW, Ha TV, Minh NL, Sripaipan T, Latkin CA, Vu PT, Quan VM, Frangakis C, Go VF: Prevalence and predictors of depressive symptoms among HIV-positive men who inject drugs in Vietnam. PLoS One 13(1):e0191548, 2018.

Riello M, Faria AV, Ficek B, Webster K, Onyike CU, Desmond J, Frangakis C, Tsapkini K: The role of language severity and education in explaining performance on object and action naming in primary progressive aphasia. Front Aging Neurosci 10:346, 2018.

Tsapkini K, Webster KT, Ficek BN, Desmond JE, Onyike CU, Rapp B, Frangakis CE, Hillis AE: Electrical brain stimulation in different variants of primary progressive aphasia: A randomized clinical trial. Alzheimers Dement 4:461-472, 2018.

Werner JD, Tregnago AC, Netto GJ, Frangakis C, Georgiades CS: Single 15-min protocol yields the same cryoablation size and margin as the conventional 10-8-10-min protocol: results of kidney and liver swine experiment. Cardiovasc Intervent Radiol 41(7):1089-1094, 2018.

Adrian Gherman (go to top of document)

Carass A, Roy S, Gherman A, Reinhold JC, Jesson A, Arbel T, Maier O, Handels H, Ghafoorian M, Platel B, Birenbaum A, Greenspan H, Pham DL, Crainiceanu CM, Calabresi PA, Prince JL, Roncal WRG, Shinohara RT, Oguz I: Evaluating white matter lesion segmentations with refined Sorensen-Dice analysis. Sci Rep 10(1):8242, 2020.

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Andre Hackman (go to top of document)

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Major Extremity Trauma Research Consortium (METRC) (includes Hackman A): Effect of supplemental perioperative oxygen on SSI among adults with lower-extremity fractures at increased risk for infection: a randomized clinical trial. J Bone Joint Surg Am 104(14):1236-1243, 2022.

Wesolowski A, Ippolito MM, Gebhardt ME, ..., Hackman A, et al: Policy implications of the Southern and Central Africa International Center of Excellence for Malaria Research: Ten years of malaria control impact assessments in hypo-, meso-, and holoendemic transmission zones in Zambia and Zimbabwe. Am J Trop Med Hyg 107(4_Suppl):68-74, 2022.

Kasper Hansen (go to top of document)

Maden SK, Walsh B, Ellrott K, Hansen KD, Thompson RF, Nellore A: recountmethylation enables flexible analysis of public blood DNA methylation array data. Bioinform Adv 3(1):vbad020, 2023.

Arneson A, Haghani A, Thompson MJ, Pellegrini M, Kwon SB, Vu H, Maciejewski E, Yao M, Li CZ, Lu AT, Morselli M, Rubbi L, Barnes B, Hansen KD, Zhou W, Breeze CE, Ernst J, Horvath S: A mammalian methylation array for profiling methylation levels at conserved sequences. Nat Commun 13(1):783, 2022.

Hu JR, Myint L, Levey AS, Coresh J, Inker LA, Grams ME, Guallar E, Hansen KD, Rhee EP, Shafi T: A metabolomics approach identified toxins associated with uremic symptoms in advanced chronic kidney disease. Kidney Int 101(2):369-378, 2022.

Schatz MC, Philippakis AA, Afgan E, Banks E, Carey VJ, Carroll RJ, Culotti A, Ellrott K, Goecks J, Grossman RL, Hall IM, Hansen KD, Lawson J, Leek JT, et al: Inverting the model of genomics data sharing with the NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-space. Cell Genom 2(1):100085, 2022.

Wang Y, Hicks SC, Hansen KD: Addressing the mean-correlation relationship in co-expression analysis. PLoS Comput Biol 18(3):e1009954, 2022.

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Credle JJ, Robinson ML, Gunn J, Monaco D, Sie B, Tchir A, Hardick J, Zheng X, Shaw-Saliba K, Rothman RE, Eshleman SH, Pekosz A, Hansen K, Mostafa H, Steinegger M, Larman HB: Highly multiplexed oligonucleotide probe-ligation testing enables efficient extraction-free SARS-CoV-2 detection and viral genotyping. Mod Pathol 34(6):1093-1103, 2021.

de Goede OM, Nachun DC, Ferraro NM, Gloudemans MJ, Rao AS, Smail C, Eulalio TY, Aguet F, Ng B, Xu J, Barbeira AN, Castel SE, Kim-Hellmuth S, Park Y, Scott AJ, Strober BJ, GTEx Consortium (includes Hansen K), et al: Population-scale tissue transcriptomics maps long non-coding RNAs to complex disease. Cell 184(10):2633-2648, 2021.

Luperchio TR, Boukas L, Zhang L, Pilarowski GO, Jiang J, Kalinousky A, Hansen KD, Bjornsson HT: Leveraging the Mendelian Disorders of the Epigenetic Machinery to systematically map functional epigenetic variation. Elife 10:e65884, 2021.

Maden SK, Thompson RF, Hansen KD, Nellore A: Human methylome variation across Infinium 450K data on the Gene Expression Omnibus. NAR Genom Bioinform 3(2):lqab025, 2021.

Rizzardi LF, Hickey PF, Idrizi A, Tryggvadottir R, Callahan CM, Stephens KE, Taverna SD, Zhang H, Ramazanoglu S, GTEx Consortium, Hansen KD, Feinberg AP: Human brain region-specific variably methylated regions are enriched for heritability of distinct neuropsychiatric traits. Genome Biol 22(1):116, 2021.

Wilks C, Zheng SC, Chen FY, Charles R, Solomon B, Ling JP, Imada EL, Zhang D, Joseph L, Leek JT, Jaffe AE, Nellore A, Collado-Torres L, Hansen KD, Langmead B: recount3: summaries and queries for large-scale RNA-seq expression and splicing. Genome Biol 22(1):323, 2021.

Boukas L, Bjornsson HT, Hansen KD: Promoter CpG density predicts downstream gene loss-of-function intolerance. Am J Hum Genet 107(3):487-498, 2020.

Castel SE, Aguet F, Mohammadi P, GTEx Consortium (includes Hansen K), Ardlie KG, Lappalainen T: A vast resource of allelic expression data spanning human tissues. Genome Biol 21(1):234, 2020.

Jiang L, Wang M, Lin S, Jian R, Li X, Chan J, Dong G, Fang H, Robinson AE, GTEx Consortium (includes Hansen K), Snyder MP: A quantitative proteome map of the human body. Cell 183(1):269-283, 2020.

Lee I, Razaghi R, Gilpatrick T, Molnar M, Gershman A, Sadowski N, Sedlazeck FJ, Hansen KD, Simpson JT, Timp W: Simultaneous profiling of chromatin accessibility and methylation on human cell lines with nanopore sequencing. Nat Methods 17(12):1191-1199, 2020.

Myint L, Wang R, Boukas L, Hansen KD, Goff LA, Avramopoulos D: A screen of 1,049 schizophrenia and 30 Alzheimer's-associated variants for regulatory potential. Am J Med Genet B Neuropsychiatr Genet 183(1):61-73, 2020.

Rajagopalan S, Park B, Palanivel R, Vinayachandran V, Deiuliis JA, Gangwar RS, Das L, Yin J, Choi Y, Al-Kindi S, Jain MK, Hansen KD, Biswal S: Metabolic effects of air pollution exposure and reversibility. J Clin Invest 130(11):6034-6040, 2020.

Boukas L, Havrilla JM, Hickey PF, Quinlan AR, Bjornsson HT, Hansen KD. Coexpression patterns define epigenetic regulators associated with neurological dysfunction. Genome Res 29(4):532-542, 2019.

Carosso GA, Boukas L, Augustin JJ, Nguyen HN, Winer BL, Cannon GH, Robertson JD, Zhang L, Hansen KD, Goff LA, Bjornsson HT: Precocious neuronal differentiation and disrupted oxygen responses in Kabuki syndrome. JCI Insight 4(20):129375, 2019.

Fahrner JA, Lin WY, Riddle RC, Boukas L, DeLeon VB, Chopra S, Lad SE, Luperchio TR, Hansen KD, Bjornsson HT: Precocious chondrocyte differentiation disrupts skeletal growth in Kabuki syndrome mice. JCI Insight 4(20):129380, 2019.

Gorkin DU, Qiu Y, Hu M, Fletez-Brant K, Liu T, Schmitt AD, Noor A, Chiou J, Gaulton KJ, Sebat J, Li Y, Hansen KD, Ren B: Common DNA sequence variation influences 3-dimensional conformation of the human genome. Genome Biol 20(1):255, 2019.

Myint L, Avramopoulos DG, Goff LA, Hansen KD: Linear models enable powerful differential activity analysis in massively parallel reporter assays. BMC Genomics 20(1):209, 2019.

Rizzardi LF, Hickey PF, Rodriguez DiBlasi V, Tryggvadottir R, Callahan CM, Idrizi A, Hansen KD, Feinberg AP: Neuronal brain-region-specific DNA methylation and chromatin accessibility are associated with neuropsychiatric trait heritability. Nat Neurosci 22(2):307-316, 2019.

Wulfridge P, Langmead B, Feinberg AP, Hansen KD: Analyzing whole genome bisulfite sequencing data from highly divergent genotypes. Nucleic Acids Res 47(19):e117, 2019.

Barbeira AN, Dickinson SP, Bonazzola R, Zheng J, Wheeler HE, Torres JM, Torstenson ES, Shah KP, Garcia T, Edwards TL, Stahl EA, Huckins LM, GTEx Consortium (includes Hansen KD), Nicolae DL, Cox NJ, Im HK: Exploring the phenotypic consequences of tissue specific gene expression variation inferred from GWAS summary statistics. Nat Commun 9(1):1825, 2018.

Barrington WT, Wulfridge P, Wells AE, Rojas CM, Howe SYF, Perry A, Hua K, Pellizzon MA, Hansen KD, Voy BH, Bennett BJ, Pomp D, Feinberg AP, Threadgill DW: Improving metabolic health through precision dietetics in mice. Genetics 208(1):399-417, 2018.

Gaysinskaya V, Miller BF, De Luca C, van der Heijden GW, Hansen KD, Bortvin A: Transient reduction of DNA methylation at the onset of meiosis in male mice. Epigenetics Chromatin 11(1):15, 2018.

Stephanie Hicks (go to top of document)

Mallick H, Chatterjee S, Chowdhury S, Chatterjee S, Rahnavard A, Hicks SC: Differential expression of single-cell RNA-seq data using Tweedie models. Stat Med 41(18):3492-3510, 2022.

Pardo B, Spangler A, Weber LM, Page SC, Hicks SC, Jaffe AE, Martinowich K, Maynard KR, Collado-Torres L: spatialLIBD: an R/Bioconductor package to visualize spatially-resolved transcriptomics data. BMC Genomics 23(1):434, 2022.

Righelli D, Weber LM, Crowell HL, Pardo B, Collado-Torres L, Ghazanfar S, Lun ATL, Hicks SC, Risso D: SpatialExperiment: infrastructure for spatially resolved transcriptomics data in R using Bioconductor. Bioinformatics 38(11):3128-3131, 2022.

Wang Y, Hicks SC, Hansen KD: Addressing the mean-correlation relationship in co-expression analysis. PLoS Comput Biol 18(3):e1009954, 2022.

Baker DN, Dyjack N, Braverman V, Hicks SC, Langmead B: Fast and memory-efficient scRNA-seq k-means clustering with various distances. ACM BCB 2021:24, 2021.

Heil BJ, Hoffman MM, Markowetz F, Lee SI, Greene CS, Hicks SC: Reproducibility standards for machine learning in the life sciences. Nat Methods 18(10):1132-1135, 2021.

Hicks SC, Liu R, Ni Y, Purdom E, Risso D: mbkmeans: Fast clustering for single cell data using mini-batch k-means. PLoS Comput Biol 17(1):e1008625, 2021.

Hippen AA, Falco MM, Weber LM, Erkan EP, Zhang K, Doherty JA, Vaharautio A, Greene CS, Hicks SC: miQC: An adaptive probabilistic framework for quality control of single-cell RNA-sequencing data. PLoS Comput Biol 17(8):e1009290, 2021.

Maynard KR, Collado-Torres L, Weber LM, Uytingco C, Barry BK, Williams SR, Catallini JL 2nd, Tran MN, Besich Z, Tippani M, Chew J, Yin Y, Kleinman JE, Hyde TM, Rao N, Hicks SC, Martinowich K, Jaffe AE: Transcriptome-scale spatial gene expression in the human dorsolateral prefrontal cortex. Nat Neurosci 24(3):425-436, 2021.

Peng RD, Hicks SC: Reproducible research: a retrospective. Annu Rev Public Health 42:79-93, 2021.

Tran MN, Maynard KR, Spangler A, Huuki LA, Montgomery KD, Sadashivaiah V, Tippani M, Barry BK, Hancock DB, Hicks SC, Kleinman JE, Hyde TM, Collado-Torres L, Jaffe AE, Martinowich K: Single-nucleus transcriptome analysis reveals cell-type-specific molecular signatures across reward circuitry in the human brain. Neuron 109(19):3088-3103, 2021.

Weber LM, Hippen AA, Hickey PF, Berrett KC, Gertz J, Doherty JA, Greene CS, Hicks SC: Genetic demultiplexing of pooled single-cell RNA-sequencing samples in cancer facilitates effective experimental design. Gigascience 10(9):giab062, 2021.

Amezquita RA, Lun ATL, Becht E, Carey VJ, Carpp LN, Geistlinger L, Marini F, Rue-Albrecht K, Risso D, Soneson C, Waldron L, Pages H, Smith ML, Huber W, Morgan M, Gottardo R, Hicks SC: Orchestrating single-cell analysis with Bioconductor. Nat Methods 17(2):137-145, 2020.

Hou W, Ji Z, Ji H, Hicks SC: A systematic evaluation of single-cell RNA-sequencing imputation methods. Genome Biol 21(1):218, 2020.

Huang R, Soneson C, Ernst FGM, Rue-Albrecht KC, Yu G, Hicks SC, Robinson MD: TreeSummarizedExperiment: a S4 class for data with hierarchical structure. F1000Res 9:1246, 2020.

Lahnemann D, Koster J, Szczurek E, McCarthy DJ, Hicks SC, et al: Eleven grand challenges in single-cell data science. Genome Biol 21(1):31, 2020.

Hicks SC, Irizarry RA: methylCC: technology-independent estimation of cell type composition using differentially methylated regions. Genome Biol 20(1):261, 2019.

Korthauer K, Kimes PK, Duvallet C, Reyes A, Subramanian A, Teng M, Shukla C, Alm EJ, Hicks SC: A practical guide to methods controlling false discoveries in computational biology. Genome Biol 20(1):118, 2019.

Townes FW, Hicks SC, Aryee MJ, Irizarry RA: Feature selection and dimension reduction for single-cell RNA-Seq based on a multinomial model. Genome Biol 20(1):295, 2019.

Hicks SC, Irizarry RA: A guide to teaching data science. The American Statistician 72(4):382-391, 2018.

Hicks SC, Okrah K, Paulson JN, Quackenbush J, Irizarry RA, Bravo HC: Smooth quantile normalization. Biostatistics 19(2):185-198, 2018.

Hicks SC, Townes FW, Teng M, Irizarry RA: Missing data and technical variability in single-cell RNA-sequencing experiments. Biostatistics 19(4):562-578, 2018.

Kumar MS, Slud EV, Okrah K, Hicks SC, Hannenhalli S, Corrada Bravo H: Analysis and correction of compositional bias in sparse sequencing count data. BMC Genomics 19(1):799, 2018.

Hongkai Ji (go to top of document)

Fang Y, Ji Z, Zhou W, Abante J, Koldobskiy MA, Ji H, Feinberg AP: DNA methylation entropy is associated with DNA sequence features and developmental epigenetic divergence. Nucleic Acids Res 51(5):2046-2065, 2023.

Huang Y, Dhummakupt A, Khetan P, Nilles T, Zhou W, Mudvari P, Szewczyk J, Chen YH, Boritz E, Ji H, Agwu A, Persaud D: Immune activation and exhaustion marker expression on T-cell subsets in ART-treated adolescents and young adults with perinatal HIV-1 infection as correlates of viral persistence. Front Immunol 14:1007626, 2023.

Li W, Berlinicke C, Huang Y, Giera S, McGrath AG, Fang W, Chen C, Takaesu F, Chang X, Duan Y, Kumar D, Chang C, Mao HQ, Sheng G, Dodge JC, Ji H, Madden S, Zack DJ, Chamling X: High-throughput screening for myelination promoting compounds using human stem cell-derived oligodendrocyte progenitor cells. iScience 26(3):106156, 2023.

Liu W, Liao X, Luo Z, Yang Y, Lau MC, Jiao Y, Shi X, Zhai W, Ji H, Yeong J, Liu J: Probabilistic embedding, clustering, and alignment for integrating spatial transcriptomics data with PRECAST. Nat Commun 14(1):296, 2023.

Shenderov E, De Marzo AM, Lotan TL, Wang H, Chan S, Lim SJ, Ji H, Allaf ME, Chapman C, Moore PA, Chen F, Sorg K, White AM, Church SE, Hudson B, Fields PA, Hu S, Denmeade SR, Pienta KJ, Pavlovich CP, Ross AE, Drake CG, Pardoll DM, Antonarakis ES: Neoadjuvant enoblituzumab in localized prostate cancer: a single-arm, phase 2 trial. Nat Med 29(4):888-897, 2023.

Zhai J, Ji H, Jiang H: Reconstruction of single-cell trajectories using stochastic tree search. Genes 14(2):318, 2023.

Dykema AG, Zhang B, Woldemeskel BA, Garliss CC, Rashid R, Westlake T, Zhang L, Zhang J, Cheung LS, Caushi JX, Pardoll DM, Cox AL, Ji H, Smith KN, Blankson JN: SARS-CoV-2 vaccination diversifies the CD4+ spike-reactive T cell repertoire in patients with prior SARS-CoV-2 infection. EBioMedicine 80:104048, 2022.

Fang W, Bell CM, Sapirstein A, Asami S, Leeper K, Zack DJ, Ji H, Kalhor R: Quantitative fate mapping: a general framework for analyzing progenitor state dynamics via retrospective lineage barcoding. Cell 185(24):4604-4620, 2022.

Frumento N, Figueroa A, Wang T, Zahid MN, Wang S, Massaccesi G, Stavrakis G, Crowe JE Jr, Flyak AI, Ji H, Ray SC, Shaw GM, Cox AL, Bailey JR: Repeated exposure to heterologous hepatitis C viruses associates with enhanced neutralizing antibody breadth and potency. J Clin Invest 132(15):e160058, 2022.

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Karaba AH, Zhou W, Hsieh LL, Figueroa A, Massaccesi G, Rothman RE, Fenstermacher KZJ, Sauer L, Shaw-Saliba K, Blair PW, Robinson ML, Leung S, Wesson R, Alachkar N, El-Diwany R, Ji H, Cox AL: Differential cytokine signatures of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) and influenza infection highlight key differences in pathobiology. Clin Infect Dis 74(2):254-262, 2022.

Lex RK, Zhou W, Ji Z, Falkenstein KN, Schuler KE, Windsor KE, Kim JD, Ji H, Vokes SA: GLI transcriptional repression is inert prior to Hedgehog pathway activation. Nat Commun 13(1):808, 2022.

Liu Q, Miao H, Li S, Zhang P, Gerber GF, Follmann D, Ji H, Zeger SL, Chertow DS, Quinn TC, Robinson ML, Kickler TS, Rothman RE, Fenstermacher KZJ, Braunstein EM, Cox AL, Farci P, Fauci AS, Lusso P: Anti-PF4 antibodies associated with disease severity in COVID-19. Proc Natl Acad Sci 119(47):e2213361119, 2022.

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Sharrock AV, Mulligan TS, Hall KR, Williams EM, White DT, Zhang L, Emmerich K, Matthews F, Nimmagadda S, Washington S, Le KD, Meir-Levi D, Cox OL, Saxena MT, Calof AL, Lopez-Burks ME, Lander AD, Ding D, Ji H, Ackerley DF, Mumm JS: NTR 2.0: a rationally engineered prodrug-converting enzyme with substantially enhanced efficacy for targeted cell ablation. Nat Methods 19(2):205-215, 2022.

Shu C, Jaffe AE, Sabunciyan S, Ji H, Astemborski J, Sun J, Bakulski KM, Sosnowski DW, Mehta SH, Kirk GD, Maher BS: Epigenome-wide association analyses of active injection drug use. Drug Alcohol Depend 235:109431, 2022.

Turnbull AE, Ji H, Dinglas VD, Wu AW, Mendez-Tellez PA, Himmelfarb CD, Shanholtz CB, Hosey MM, Hopkins RO, Needham DM: Understanding patients' perceived health after critical illness: analysis of two prospective, longitudinal studies of ARDS survivors. Chest 161(2):407-417, 2022.

Wei X, Li Z, Ji H, Wu H: EDClust: an EM-MM hybrid method for cell clustering in multiple-subject single-cell RNA sequencing. Bioinformatics 38(10):2692-2699, 2022.

Akindele N, Kouo T, Karaba AH, Gordon O, Fenstermacher KZJ, Beaudry J, Rubens JH, Atik CC, Zhou W, Ji H, Tao X, Vaidya D, Mostafa H, Caturegli P, Blair PW, Sauer L, Cox AL, Persaud D: Distinct cytokine and chemokine dysregulation in hospitalized children with acute coronavirus disease 2019 and multisystem inflammatory syndrome with similar levels of nasopharyngeal severe acute respiratory syndrome coronavirus 2 shedding. J Infect Dis 224(4):606-615, 2021.

Caushi JX, Zhang J, Ji Z, Vaghasia A, Zhang B, Hsiue EH, Mog BJ, Hou W, ..., Ji H, et al: Transcriptional programs of neoantigen-specific TIL in anti-PD-1-treated lung cancers. Nature 596(7870):126-132, 2021.

Chamling X, Kallman A, Fang W, Berlinicke CA, Mertz JL, Devkota P, Pantoja IEM, Smith MD, Ji Z, Chang C, Kaushik A, Chen L, Whartenby KA, Calabresi PA, Mao HQ, Ji H, Wang TH, Zack DJ: Single-cell transcriptomic reveals molecular diversity and developmental heterogeneity of human stem cell-derived oligodendrocyte lineage cells. Nat Commun 12(1):652, 2021.

Cottrell T, Zhang J, Zhang B, Kaunitz GJ, Burman P, Chan HY, Verde F, Hooper JE, Hammers H, Allaf ME, Ji H, Taube J, Smith KN: Evaluating T-cell cross-reactivity between tumors and immune-related adverse events with TCR sequencing: pitfalls in interpretations of functional relevance. J Immunother Cancer 9(7):e002642, 2021.

Dykema AG, Zhang B, Woldemeskel BA, Garliss CC, Cheung LS, Choudhury D, Zhang J, Aparicio L, Bom S, Rashid R, Caushi JX, Hsiue EH, Cascino K, Thompson EA, Kwaa AK, Singh D, Thapa S, Ordonez AA, Pekosz A, D'Alessio FR, Powell JD, Yegnasubramanian S, Zhou S, Pardoll DM, Ji H, Cox AL, Blankson JN, Smith KN: Functional characterization of CD4+ T cell receptors crossreactive for SARS-CoV-2 and endemic coronaviruses. J Clin Invest 131(10):e146922, 2021.

Gao M, Fu Y, Zhou W, Gui G, Lal B, Li Y, Xia S, Ji H, Eberhart CG, Laterra J, Ying M: EGFR activates a TAZ-driven oncogenic program in glioblastoma. Cancer Res 81(13):3580-3592, 2021.

Hong X, Surkan PJ, Zhang B, Keiser A, Ji Y, Ji H, Burd I, Bustamante-Helfrich B, Ogunwole SM, Tang WY, Liu L, Pearson C, Cerda S, Zuckerman B, Hao L, Wang X: Genome-wide association study identifies a novel maternal gene x stress interaction associated with spontaneous preterm birth. Pediatr Res 89(6):1549-1556, 2021.

Koldobskiy MA, Jenkinson G, Abante J, Rodriguez DiBlasi VA, Zhou W, Pujadas E, Idrizi A, Tryggvadottir R, Callahan C, Bonifant CL, Rabin KR, Brown PA, Ji H, Goutsias J, Feinberg AP: Converging genetic and epigenetic drivers of paediatric acute lymphoblastic leukaemia identified by an information-theoretic analysis. Nat Biomed Eng 5(4):360-376, 2021.

Sinha S, Satpathy AT, Zhou W, Ji H, Stratton JA, Jaffer A, Bahlis N, Morrissy S, Biernaskie JA: Profiling chromatin accessibility at single-cell resolution. Genomics Proteomics Bioinformatics 19(2):172-190, 2021.

Stephens KE, Zhou W, Renfro Z, Ji Z, Ji H, Guan Y, Taverna SD: Global gene expression and chromatin accessibility of the peripheral nervous system in animal models of persistent pain. J Neuroinflammation 18(1):185, 2021.

Thompson EA, Cascino K, Ordonez AA, Zhou W, ..., Ji H, et al: Metabolic programs define dysfunctional immune responses in severe COVID-19 patients. Cell Rep 34(11):108863, 2021.

Wang G, Foney DM, DiBari J, Hong X, Showell N, Kim KS, Ji H, Pearson C, Mirolli G, Rusk S, Sharfstein J, Cheng TL, Zuckerman B, Wang X: A prospective cohort study on the intersectionality of obesity, chronic disease, social factors, and incident risk of COVID-19 in US low-income minority middle-age mothers. Int J Obes 45(12):2577-2584, 2021.

Wang G, Tang WY, Ji H, Wang X: Prenatal exposure to mercury and precocious puberty: a prospective birth cohort study. Hum Reprod 36(3):712-720, 2021.

Wang G, Tang WY, Wills-Karp M, Ji H, Bartell TR, Ji Y, Hong X, Pearson C, Cheng TL, Wang X: A nonlinear relation between maternal red blood cell manganese concentrations and child blood pressure at age 6-12 y: a prospective birth cohort study. J Nutr 151(3):570-578, 2021.

Xu R, Hong X, Zhang B, Huang W, Hou W, Wang G, Wang X, Igusa T, Liang L, Ji H: DNA methylation mediates the effect of maternal smoking on offspring birthweight: a birth cohort study of multi-ethnic US mother-newborn pairs. Clin Epigenetics 13(1):47, 2021.

Zhang L, Chen C, Fu J, Lilley B, Berlinicke C, Hansen B, Ding D, Wang G, Wang T, Shou D, Ye Y, Mulligan T, Emmerich K, Saxena MT, Hall KR, Sharrock AV, Brandon C, Park H, Kam TI, Dawson VL, Dawson TM, Shim JS, Hanes J, Ji H, Liu JO, Qian J, Ackerley DF, Rohrer B, Zack DJ, Mumm JS: Large-scale phenotypic drug screen identifies neuroprotectants in zebrafish and mouse models of retinitis pigmentosa. Elife 10:e57245, 2021.

Hong X, Zhang B, Liang L, Zhang Y, Ji Y, Wang G, Ji H, Clish CB, Burd I, Pearson C, Zuckerman B, Hu FB, Wang X: Postpartum plasma metabolomic profile among women with preeclampsia and preterm delivery: implications for long-term health. BMC Med 18(1):277, 2020.

Hou W, Ji Z, Ji H, Hicks SC: A systematic evaluation of single-cell RNA-sequencing imputation methods. Genome Biol 21(1):218, 2020.

Ji Z, Zhou W, Hou W, Ji H: Single-cell ATAC-seq signal extraction and enhancement with SCATE. Genome Biol 21(1):161, 2020.

Lex RK, Ji Z, Falkenstein KN, Zhou W, Henry JL, Ji H, Vokes SA: GLI transcriptional repression regulates tissue-specific enhancer activity in response to Hedgehog signaling. Elife 9:e50670, 2020.

Qiu X, Ma F, Zhao M, Cao Y, Shipp L, Liu A, Dutta A, Singh A, Braikia FZ, De S, Wood WH 3rd, Becker KG, Zhou W, Ji H, Zhao K, Atchison ML, Sen R: Altered 3D chromatin structure permits inversional recombination at the IgH locus. Sci Adv 6(33):eaaz8850, 2020.

Shu C, Jaffe AE, Sabunciyan S, Ji H, Astemborski J, Sun J, Bakulski KM, Mehta SH, Kirk GD, Maher BS: Epigenome-wide association scan identifies methylation sites associated with HIV infection. Epigenomics 12(21):1917-1927, 2020.

Surkan PJ, Hong X, Zhang B, Nawa N, Ji H, Tang WY, Ji Y, Kimmel MC, Wang G, Pearson C, Wang X: Can social support during pregnancy affect maternal DNA methylation? Findings from a cohort of African-Americans. Pediatr Res 88(1):131-138, 2020.

Zhang J, Ji Z, Caushi JX, El Asmar M, Anagnostou V, Cottrell TR, Chan HY, Suri P, Guo H, Merghoub T, Chaft JE, Reuss JE, Tam AJ, Blosser RL, Abu-Akeel M, Sidhom JW, Zhao N, Ha JS, Jones DR, Marrone KA, Naidoo J, Gabrielson E, Taube JM, Velculescu VE, Brahmer JR, Housseau F, Hellmann MD, Forde PM, Pardoll DM, Ji H, Smith KN: Compartmental analysis of T-cell clonal dynamics as a function of pathologic response to neoadjuvant PD-1 blockade in resectable non-small cell lung cancer. Clin Cancer Res 26(6):1327-1337, 2020.

Azuine RE, Ji Y, Chang HY, Kim Y, Ji H, DiBari J, Hong X, Wang G, Singh GK, Pearson C, Zuckerman B, Surkan PJ, Wang X: Prenatal risk factors and perinatal and postnatal outcomes associated with maternal opioid exposure in an urban, low-income, multiethnic US population. JAMA Netw Open 2(6):e196405, 2019.

Chen Z, Ji Z, Ngiow SF, Manne S, Cai Z, Huang AC, Johnson J, Staupe RP, Bengsch B, Xu C, Yu S, Kurachi M, Herati RS, Vella LA, Baxter AE, Wu JE, Khan O, Beltra JC, Giles JR, Stelekati E, McLane LM, Lau CW, Yang X, Berger SL, Vahedi G, Ji H, Wherry EJ: TCF-1-centered transcriptional network drives an effector versus exhausted CD8 T cell-fate decision. Immunity 51(5):840-855, 2019.

Hong X, Liang L, Sun Q, Keet CA, Tsai HJ, Ji Y, Wang G, Ji H, Clish C, Pearson C, Wang Y, Wood RA, Hu FB, Wang X: Maternal triacylglycerol signature and risk of food allergy in offspring. J Allergy Clin Immunol 144(3):729-737, 2019.

Ji Z, Ji H: Pseudotime reconstruction using TSCAN. Methods Mol Biol 1935:115-124, 2019.

Olapeju B, Saifuddin A, Wang G, Ji Y, Hong X, Raghavan R, Summers A, Keiser A, Ji H, Zuckerman B, Yarrington C, Hao L, Surkan PJ, Cheng TL, Wang X: Maternal postpartum plasma folate status and preterm birth in a high-risk US population. Public Health Nutr 22(7):1281-1291, 2019.

Stephens KE, Zhou W, Ji Z, Chen Z, He S, Ji H, Guan Y, Taverna SD: Sex differences in gene regulation in the dorsal root ganglion after nerve injury. BMC Genomics 20(1):147, 2019.

Surkan PJ, Dong L, Ji Y, Hong X, Ji H, Kimmel M, Tang WY, Wang X: Paternal involvement and support and risk of preterm birth: findings from the Boston birth cohort. J Psychosom Obstet Gynaecol 40(1):48-56, 2019.

Wang G, DiBari J, Bind E, Steffens AM, Mukherjee J, Azuine RE, Singh GK, Hong X, Ji Y, Ji H, Pearson C, Zuckerman BS, Cheng TL, Wang X: Association between maternal exposure to lead, maternal folate status, and intergenerational risk of childhood overweight and obesity. JAMA Netw Open 2(10):e1912343, 2019.

Zhou W, Ji Z, Fang W, Ji H: Global prediction of chromatin accessibility using small-cell-number and single-cell RNA-seq. Nucleic Acids Res 47(19):e121, 2019.

Hong X, Sherwood B, Ladd-Acosta C, Peng S, Ji H, Hao K, Burd I, Bartell TR, Wang G, Tsai HJ, Liu X, Ji Y, Wahl A, Caruso D, Lee-Parritz A, Zuckerman B, Wang X: Genome-wide DNA methylation associations with spontaneous preterm birth in US blacks: findings in maternal and cord blood samples. Epigenetics 13(2):163-172, 2018.

Ji Y, Riley AW, Lee LC, Hong X, Wang G, Tsai HJ, Mueller NT, Pearson C, Thermitus J, Panjwani A, Ji H, Bartell TR, Burd I, Fallin MD, Wang X: Maternal biomarkers of acetaminophen use and offspring attention deficit hyperactivity disorder. Brain Sci 8(7):127, 2018.

Kuang Z, Ji H, Boeke JD: Stress response factors drive regrowth of quiescent cells. Curr Genet 64(4):807-810, 2018.

Kuang Z, Ji Z, Boeke JD, Ji H: Dynamic motif occupancy (DynaMO) analysis identifies transcription factors and their binding sites driving dynamic biological processes. Nucleic Acids Res 46(1):e2, 2018.

Qiu X, Kumari G, Gerasimova T, Du H, Labaran L, Singh A, De S, Wood WH 3rd, Becker KG, Zhou W, Ji H, Sen R: Sequential enhancer sequestration dysregulates recombination center formation at the IgH locus. Mol Cell 70(1):21-33, 2018.

Tsai HJ, Wang G, Hong X, Yao TC, Ji Y, Radovick S, Ji H, Cheng TL, Wang X: Early life weight gain and development of childhood asthma in a prospective birth cohort. Ann Am Thorac Soc 15(10):1197-1204, 2018.

Wang J, Zibetti C, Shang P, Sripathi SR, Zhang P, Cano M, Hoang T, Xia S, Ji H, Merbs SL, Zack DJ, Handa JT, Sinha D, Blackshaw S, Qian J: ATAC-Seq analysis reveals a widespread decrease of chromatin accessibility in age-related macular degeneration. Nat Commun 9(1):1364, 2018.

Zhang B, Hong X, Ji H, Tang WY, Kimmel M, Ji Y, Pearson C, Zuckerman B, Surkan PJ, Wang X: Maternal smoking during pregnancy and cord blood DNA methylation: new insight on sex differences and effect modification by maternal folate levels. Epigenetics 13(5):505-518, 2018.

Zhao M, Joy J, Zhou W, De S, Wood WH 3rd, Becker KG, Ji H, Sen R: Transcriptional outcomes and kinetic patterning of gene expression in response to NF-κB activation. PLoS Biol 16(9):e2006347, 2018.

Ximin Li (go to top of document)

Abousy M, Schilling A, Qiu M, Rajaii F, Li X, Woreta FA: Ophthalmology resident oculofacial surgery case exposure: an ACGME case log analysis. Ophthalmic Plast Reconstr Surg 39(2):187-193, 2023.

Nozadi SS, Li X, Kong X, Rennie B, Kanda D, MacKenzie D, Luo L, Posner J, Blackwell CK, Croen LA, Ferrara A, O'Connor TG, Zimmerman E, Ghassabian A, Leve LD, Elliott AJ, Schmidt RJ, Sprowles JLN, Lewis JL: Effects of COVID-19 financial and social hardships on infants' and toddlers' development in the ECHO Program. Int J Environ Res Public Health 20(2):1013, 2023.

Abousy M, Schilling A, Qiu M, Justin GA, Rajaii F, Li X, Woreta FA: Ophthalmology resident ophthalmic trauma case exposure: trends over time and an ACGME case log analysis. Clin Ophthalmol 16:1365-1373, 2022.

Fliotsos MJ, Campbell JA, Li X, Engstrom MB, Stoeger CG, McClory C, Titus MS, Johnson P, Johnston KB, Fischer T, Brooks LK, Montoya MM, Glasser DB, Akpek EK, Srikumaran D: Trends in early graft failure leading to regrafting after endothelial keratoplasty in the United States. Cornea 41(7):833-839, 2022.

Guan C, Pease ME, Quillen S, Ling YTT, Li X, Kimball E, Johnson TV, Nguyen TD, Quigley HA: Quantitative microstructural analysis of cellular and tissue remodeling in human glaucoma optic nerve head. Invest Ophthalmol Vis Sci 63(11):18, 2022.

Hill S, Topel K, Li X, Solomon BS: Engagement in a social needs navigation program and health care utilization in pediatric primary care. Acad Pediatr 22(7):1221-1227, 2022.

Iannuzzelli K, Shi R, Carter R, Huynh R, Morgan O, Kuo SH, Bang J, Mills KA, Baranano K, Zee DS, Moukheiber E, Roda R, Butala A, Marvel C, Joyce M, Li X, Wang J, Rosenthal LS: The association between educational attainment and SCA 3 age of onset and disease course. Parkinsonism Relat Disord 98:99-102, 2022.

Justin GA, Miller SC, Tsou B, Li X, Purt B, Fliotsos MJ, Zhao J, Gardner SE, Legault GL, Yonekawa Y, Rapuano CJ, Woreta FA, Pelton RW: Ghost and honorary authorship in ophthalmology: a cross-sectional survey. Am J Ophthalmol 240:67-78, 2022.

Miller SC, Meeralakshmi P, Fliotsos MJ, Justin GA, Yonekawa Y, Chen A, Hoskin AK, Blanch RJ, Cavuoto KM, Low R, Li X, et al: Global current practice patterns for the management of hyphema. Clin Ophthalmol 16:3135-3144, 2022.

Colantuoni E, Koneru M, Akhlaghi N, Li X, Hashem MD, Dinglas VD, Neufeld KJ, Harhay MO, Needham DM: Heterogeneity in design and analysis of ICU delirium randomized trials: a systematic review. Trials 22(1):354, 2021.

Colantuoni E, Li X, Hashem MD, Girard TD, Scharfstein DO, Needham DM: A structured methodology review showed analyses of functional outcomes are frequently limited to "survivors only" in trials enrolling patients at high risk of death. J Clin Epidemiol 137:126-132, 2021.

Dunlop AL, Essalmi AG, Alvalos L, ..., Li X, et al: Racial and geographic variation in effects of maternal education and neighborhood-level measures of socioeconomic status on gestational age at birth: Findings from the ECHO cohorts. PLoS One 16(1):e0245064, 2021.

Mannschreck DB, Li X, Okoye G: Rural melanoma patients in Maryland do not present with more advanced disease than urban patients. Dermatol Online J 27(5), 2021.

Ong SS, Liu TYA, Li X, Singh MS: Choriocapillaris flow loss in center-involving retinitis pigmentosa: a quantitative optical coherence tomography angiography study using a novel classification system. Graefes Arch Clin Exp Ophthalmol 259(11):3235-3242, 2021.

Shah YS, Zhu AY, Zafar SI, Sarezky D, Li X, Liu TYA, Sachdeva MM, Woreta FA: Clinical outcomes of secondary scleral-sutured foldable hydrophilic acrylic intraocular lens placement by trainees: a single-site analysis. Clin Ophthalmol 15:783-790, 2021.

Ansah DO, Li X, Gehlbach PL, Jun AS, Soiberman US: Prediction error in iris suture fixated intraocular lenses and long-term stability. Clin Exp Ophthalmol 48(9):1175-1182, 2020.

Ong SS, Linz MO, Li X, Liu TYA, Han IC, Scott AW: Retinal thickness and microvascular changes in children with sickle cell disease evaluated by optical coherence tomography (OCT) and OCT angiography. Am J Ophthalmol 209:88-98, 2020.

Ellenbogen MI, Brotman DJ, Prichett L, Li X, Feldman LS: Contemporary rates of preoperative cardiac testing prior to inpatient hip fracture surgery. J Hosp Med 14(4):224-228, 2019.

Hosey MM, Leoutsakos JS, Li X, Dinglas VD, Bienvenu OJ, Parker AM, Hopkins RO, Needham DM, Neufeld KJ: Screening for posttraumatic stress disorder in ARDS survivors: validation of the Impact of Event Scale-6 (IES-6). Crit Care 23(1):276, 2019.

Hutton HE, Lesko CR, Li X, Thompson CB, Lau B, Napravnik S, Mayer KH, Mathews WC, McCaul ME, Crane HM, Fredericksen RJ, Cropsey KL, Saag M, Christopoulos K, Chander G: Alcohol use patterns and subsequent sexual behaviors among women, men who have sex with men and men who have sex with women engaged in routine HIV care in the United States. AIDS Behav 23(6):1634-1646, 2019.

Lewis JF, Zeger SL, Li X, Mann NC, Newgard CD, Haynes S, Wood SF, Dai M, Simon AE, McCarthy ML: Gender differences in the quality of EMS care nationwide for chest pain and out-of-hospital cardiac arrest. Womens Health Issues 29(2):116-124, 2019.

McCarthy ML, Haynes S, Li X, Mann NC, Newgard CD, Lewis JF, Simon AE, Wood SF, Zeger SL: "Make the Call, Don't Miss a Beat" campaign: effect on emergency medical services use in women with heart attack signs. Womens Health Issues 29(5):392-399, 2019.

Ambinder EB, Harvey SC, Panigrahi B, Li X, Woods RW: Synthesized mammography: the new standard of care when screening for breast cancer with digital breast tomosynthesis? Acad Radiol 25(8):973-976, 2018.

Commodore-Mensah Y, Selvin E, Aboagye J, Turkson-Ocran RA, Li X, Himmelfarb CD, Ahima RS, Cooper LA: Hypertension, overweight/obesity, and diabetes among immigrants in the United States: an analysis of the 2010-2016 National Health Interview Survey. BMC Public Health 18(1):773, 2018.

Martin Lindquist (go to top of document)

Andreella A, Finos L, Lindquist MA: Enhanced hyperalignment via spatial prior information. Hum Brain Mapp 4(4):1725-1740, 2023.

Gujar SK, Manzoor K, Wongsripuemtet J, Wang G, Ryan D, Agarwal S, Lindquist M, Caffo B, Pillai JJ, Sair HI: Identification of the language network from resting-state fMRI in patients with brain tumors: how accurate are experts? AJNR Am J Neuroradiol 44(3):274-282, 2023.

Murtha K, Larsen B, Pines A, Parkes L, Moore TM, Adebimpe A, Bertolero M, Alexander-Bloch A, Calkins ME, Davila DG, Lindquist MA, Mackey AP, Roalf DR, Scott JC, Wolf DH, Gur RC, Gur RE, Barzilay R, Satterthwaite TD: Associations between neighborhood socioeconomic status, parental education, and executive system activation in youth. Cereb Cortex 33(4):1058-1073, 2023.

Nath T, Caffo B, Wager T, Lindquist MA: A machine learning based approach towards high-dimensional mediation analysis. Neuroimage 268:119843, 2023.

Tang B, Zhao Y, Venkataraman A, Tsapkini K, Lindquist MA, Pekar J, Caffo B: Differences in functional connectivity distribution after transcranial direct-current stimulation: a connectivity density point of view. Hum Brain Mapping 44(1):170-185, 2023.

Berardi G, Frey-Law L, ..., Lindquist M, Caffo BS, Crainiceanu C, Zeger S, ..., Taub M, et al: Multi-site observational study to assess biomarkers for susceptibility or resilience to chronic pain: The Acute to Chronic Pain Signatures (A2CPS) study protocol. Front Med 9:849214, 2022.

Cheng JC, Anzolin A, Berry M, Honari H, Paschali M, Lazaridou A, Lee J, Ellingsen DM, Loggia ML, Grahl A, Lindquist MA, Edwards RR, Napadow V: Dynamic functional brain connectivity underlying temporal summation of pain in fibromyalgia. Arthritis Rheumatol 74(4):700-710, 2022.

Honari H, Lindquist MA: Mode decomposition-based time-varying phase synchronization for fMRI. Neuroimage 261:119519, 2022.

Krimmel SR, DeSouza DD, Keaser ML, Sanjanwala BM, Cowan RP, Lindquist MA, Haythornthwaite JA, Seminowicz DA: Three dimensions of association link migraine symptoms and functional connectivity. J Neurosci 42(31):6156-6166, 2022.

Langenecker SA, Westlund Schreiner M, Thomas LR, Bessette KL, DelDonno SR, Jenkins LM, Easter RE, Stange JP, Pocius SL, Dillahunt A, Love TM, Phan KL, Koppelmans V, Paulus M, Lindquist MA, Caffo B, Mickey BJ, Welsh RC: Using network parcels and resting-state networks to estimate correlates of mood disorder and related research domain criteria constructs of reward responsiveness and inhibitory control. Biol Psychiatry Cogn Neurosci Neuroimaging 7(1):76-84, 2022.

Santhanam P, Nath T, Lindquist MA, Cooper DS: Relationship between TSH levels and cognition in the young adult: an analysis of the human connectome project data. J Clin Endocrinol Metab 107(7):1897-1905, 2022.

Wang G, Datta A, Lindquist MA: Bayesian functional registration of fMRI activation maps. Ann Appl Stat 16 (3), 1676-1699, 2022.

Weaver C, Xiao L, Lindquist MA: Single-index models with functional connectivity network predictors. Biostatistics 24(1):52-67, 2022.

Zhu X, Suarez-Jimenez B, Lazarov A, Such S, Marohasy C, Small SS, Wager TD, Lindquist MA, Lissek S, Neria Y: Sequential fear generalization and network connectivity in trauma exposed humans with and without psychopathology. Commun Biol 5(1):1275, 2022.

Barber AD, Hegarty CE, Lindquist M, Karlsgodt KH: Heritability of functional connectivity in resting state: assessment of the dynamic mean, dynamic variance, and static connectivity across networks. Cereb Cortex 31(6):2834-2844, 2021.

Beheshtian E, Jalilianhasanpour R, Modir Shanechi A, Sethi V, Wang G, Lindquist MA, Caffo BS, Agarwal S, Pillai JJ, Gujar SK, Sair HI: Identification of the somatomotor network from language task-based fMRI compared with resting-state fMRI in patients with brain lesions. Radiology 301(1):178-184, 2021.

Choe AS, Tang B, Smith KR, Honari H, Lindquist MA, Caffo BS, Pekar JJ: Phase-locking of resting-state brain networks with the gastric basal electrical rhythm. PLoS One 16(1):e0244756, 2021.

Duffy KA, Fisher ZF, Arizmendi CA, Molenaar PCM, Hopfinger J, Cohen JR, Beltz AM, Lindquist MA, Hallquist MN, Gates KM: Detecting task-dependent functional connectivity in group iterative multiple model estimation with person-specific hemodynamic response functions. Brain Connect 11(6):418-429, 2021.

Duffy KA, Rosch KS, Nebel MB, Seymour KE, Lindquist MA, Pekar JJ, Mostofsky SH, Cohen JR: Increased integration between default mode and task-relevant networks in children with ADHD is associated with impaired response control. Dev Cogn Neurosci 50:100980, 2021.

Honari H, Choe AS, Lindquist MA: Evaluating phase synchronization methods in fMRI: a comparison study and new approaches. Neuroimage 228:117704, 2021.

Kragel PA, Ceko M, Theriault J, Chen D, Satpute AB, Wald LW, Lindquist MA, Feldman Barrett L, Wager TD: A human colliculus-pulvinar-amygdala pathway encodes negative emotion. Neuron 109(15):2404-2412, 2021.

Ma W, Xiao L, Liu B, Lindquist MA: A functional mixed model for scalar on function regression with application to a functional MRI study. Biostatistics 22(3):439-454, 2021.

Shappell HM, Duffy KA, Rosch KS, Pekar JJ, Mostofsky SH, Lindquist MA, Cohen JR: Children with attention-deficit/hyperactivity disorder spend more time in hyperconnected network states and less time in segregated network states as revealed by dynamic connectivity analysis. Neuroimage 229:117753, 2021.

Wang G, Muschelli J, Lindquist MA: Moderated t-tests for group-level fMRI analysis. Neuroimage 237:118141, 2021.

Geuter S, Reynolds Losin EA, Roy M, Atlas LY, Schmidt L, Krishnan A, Koban L, Wager TD, Lindquist MA: Multiple brain networks mediating stimulus-pain relationships in humans. Cereb Cortex 30(7):4204-4219, 2020.

Lindquist M: Neuroimaging results altered by varying analysis pipelines. Nature 582(7810):36-37, 2020.

Lurie DJ, Kessler D, Bassett DS, Betzel RF, Breakspear M, Kheilholz S, Kucyi A, Liegeois R, Lindquist MA, McIntosh AR, Poldrack RA, Shine JM, Thompson WH, Bielczyk NZ, Douw L, Kraft D, Miller RL, Muthuraman M, Pasquini L, Razi A, Vidaurre D, Xie H, Calhoun VD: Questions and controversies in the study of time-varying functional connectivity in resting fMRI. Netw Neurosci 4(1):30-69, 2020.

Mejia AF, Yue YR, Bolin D, Lindgren F, Lindquist MA: A Bayesian general linear modeling approach to cortical surface fMRI data analysis. JASA 115(530):501-520, 2020.

Sobel ME, Lindquist MA: Estimating causal effects in studies of human brain function: New models, methods and estimands. Ann Appl Stat 14(1): 452-472, 2020.

Zhao Y, Lindquist MA, Caffo BS: Sparse principal component based high-dimensional mediation analysis. Comput Stat Data Anal 142: 106835, 2020.

Branscheidt M, Kassavetis P, Anaya M, Rogers D, Huang HD, Lindquist MA, Celnik P: Fatigue induces long-lasting detrimental changes in motor-skill learning. Elife 8:e40578, 2019.

Honari H, Choe AS, Pekar JJ, Lindquist MA: Investigating the impact of autocorrelation on time-varying connectivity. Neuroimage 197:37-48, 2019.

Krause AJ, Prather AA, Wager TD, Lindquist MA, Walker MP: The pain of sleep loss: a brain characterization in humans. J Neurosci 39(12):2291-2300, 2019.

Lindquist MA, Geuter S, Wager TD, Caffo BS: Modular preprocessing pipelines can reintroduce artifacts into fMRI data. Hum Brain Mapp 40(8):2358-2376, 2019.

Schambra HM, Xu J, Branscheidt M, Lindquist M, Uddin J, Steiner L, Hertler B, Kim N, Berard J, Harran MD, Cortes JC, Kitago T, Luft A, Krakauer JW, Celnik PA: Differential poststroke motor recovery in an arm versus hand muscle in the absence of motor evoked potentials. Neurorehabil Neural Repair 33(7):568-580, 2019.

Seminowicz DA, Remeniuk B, Krimmel SR, Smith MT, Barrett FS, Wulff AB, Furman AJ, Geuter S, Lindquist MA, Irwin MR, Finan PH: Pain-related nucleus accumbens function: modulation by reward and sleep disruption. Pain 160(5):1196-1207, 2019.

Shappell H, Caffo BS, Pekar JJ, Lindquist MA: Improved state change estimation in dynamic functional connectivity using hidden semi-Markov models. Neuroimage 191:243-257, 2019.

van der Miesen MM, Lindquist MA, Wager TD: Neuroimaging-based biomarkers for pain: state of the field and current directions. Pain Rep 4(4):e751, 2019.

Xu J, Branscheidt M, Schambra H, Steiner L, Widmer M, Diedrichsen J, Goldsmith J, Lindquist M, Kitago T, Luft AR, Krakauer JW, Celnik PA, SMARTS Study Group: Rethinking interhemispheric imbalance as a target for stroke neurorehabilitation. Ann Neurol 85(4):502-513, 2019.

Barber AD, Lindquist MA, DeRosse P, Karlsgodt KH: Dynamic functional connectivity states reflecting psychotic-like experiences. Biol Psychiatry Cogn Neurosci Neuroimaging 3(5):443-453, 2018.

Chen OY, Crainiceanu C, Ogburn EL, Caffo BS, Wager TD, Lindquist MA: High-dimensional multivariate mediation with application to neuroimaging data. Biostatistics 19(2):121-136, 2018.

Cheng JC, Rogachov A, Hemington KS, Kucyi A, Bosma RL, Lindquist MA, Inman RD, Davis KD: Multivariate machine learning distinguishes cross-network dynamic functional connectivity patterns in state and trait neuropathic pain. Pain 159(9):1764-1776, 2018.

Mejia AF, Nebel MB, Barber AD, Choe AS, Pekar JJ, Caffo BS, Lindquist MA: Improved estimation of subject-level functional connectivity using full and partial correlation with empirical Bayes shrinkage. Neuroimage 172:478-491, 2018.

Solo V, Poline JB, Lindquist MA, Simpson SL, Bowman FD, Chung MK, Cassidy B: Connectivity in fMRI: blind spots and breakthroughs. IEEE Trans Med Imaging 37(7):1537-1550, 2018.

Zhu X, Suarez-Jimenez B, Lazarov A, Helpman L, Papini S, Lowell A, Durosky A, Lindquist MA, Markowitz JC, Schneier F, Wager TD, Neria Y: Exposure-based therapy changes amygdala and hippocampus resting-state functional connectivity in patients with posttraumatic stress disorder. Depress Anxiety 35(10):974-984, 2018.

Thomas Louis (go to top of document)

Berube S, Kobayashi T, Wesolowski A, Norris DE, Ruczinski I, Moss WJ, Louis TA: A Bayesian hierarchical model for signal extraction from protein microarrays. Stat Med 42(9):1445-1460, 2023.

Berube S, Kobayashi T, Wesolowski A, Norris DE, Ruczinski I, Moss WJ, Louis TA: A pre-processing pipeline to quantify, visualize, and reduce technical variation in protein microarray studies. Proteomics 22(3):e2100033, 2022.

Collaco JM, Raraigh KS, Betz J, Aksit MA, Blau N, Brown J, Dietz HC, MacCarrick G, Nogee LM, Sheridan MB, Vernon HJ, Beaty TH, Louis TA, Cutting GR: Accurate assignment of disease liability to genetic variants using only population data. Genet Med 24(1):87-99, 2022.

Ippolito MM, Kabuya JB, Hauser M, Kamavu LK, Banda PM, Yanek LR, Malik R, Mulenga M, Bailey JA, Chongwe G, Louis TA, Shapiro TA, Moss WJ, Southern and Central Africa International Centers of Excellence for Malaria Research: Whole blood transfusion for severe malarial anemia in a high plasmodium falciparum transmission setting. Clin Infect Dis 75(11):1893-1902, 2022.

Louis TA: Discussion of The Statistician in Medicine, by Professor Sir Austin Bradford Hill. Stat Med 40(1):35-36, 2021.

Rothmann M, Crown W, Louis TA, Permutt T, Ruberg S, Segal J, Scott J: Assessing and communicating heterogeneity of treatment effects for patient subpopulations: Panel discussion on considerations in design and analysis. Pharm Stat 20(5):952-964, 2021.

Daumit GL, Janssen EM, Jerome GJ, Dalcin AT, Charleston J, Clark JM, Coughlin JW, Yeh HC, Miller ER, Durkin N, Louis TA, Frick KD, Wang NY, Appel LJ: Cost of behavioral weight loss programs implemented in clinical practice: The POWER trial at Johns Hopkins. Transl Behav Med 10(1):103-113, 2020.

Henderson NC, Louis TA, Rosner GL, Varadhan R: Individualized treatment effects with censored data via fully nonparametric Bayesian accelerated failure time models. Biostatistics 21(1):50-68, 2020.

Brownstein NC, Louis TA, O'Hagan A, Pendergast J: The role of expert judgment in statistical inference and evidence-based decision-making. The American Statistician 73(S1):56-68, 2019.

Datta A, Lin W, Rao A, Diouf D, Kouame A, Edwards JK, Bao L, Louis TA, Baral S: Bayesian estimation of MSM population size in Cote d'Ivoire. Stat Public Policy 6(1):1-13, 2019.

Franco C, Little RJA, Louis TA, Slud EV: Comparative study of confidence intervals for proportions in complex sample surveys. J Surv Stat Methodol 7(3):334-364, 2019.

Li Q, Louis TA, Liu L, Wang C, Tsui AO: Subnational estimation of modern contraceptive prevalence in five sub-Saharan African countries: a Bayesian hierarchical approach. BMC Public Health 19(1):216, 2019.

Rosenblum MA, Miller P, Reist B, Stuart EA, Thieme M, Louis TA: Adaptive design in surveys and clinical trials: similarities, differences and opportunities for cross‐fertilization. JRSS-A 182(3):963-982, 2019.

Allon M, Imrey PB, Cheung AK, Radeva M, Alpers CE, Beck GJ, Dember LM, Farber A, Greene T, Himmelfarb J, Huber TS, Kaufman JS, Kusek JW, Roy-Chaudhury P, Robbin ML, Vazquez MA, Feldman HI, Hemodialysis Fistula Maturation (HFM) Study Group (includes Louis T): Relationships between clinical processes and arteriovenous fistula cannulation and maturation: a multicenter prospective cohort study. Am J Kidney Dis 71(5):677-689, 2018.

Hemorrhagic Stroke Academia Industry (HEADS) Roundtable Participants (includes Louis T): Basic and translational research in intracerebral hemorrhage: limitations, priorities, and recommendations. Stroke 49(5):1308-1314, 2018.

Hemorrhagic Stroke Academia Industry (HEADS) Roundtable Participants (includes Louis T): Unmet needs and challenges in clinical research of intracerebral hemorrhage. Stroke 49(5):1299-1307, 2018.

Keiding N, Louis TA: Web-based enrollment and other types of self-selection in surveys and studies: consequences for generalizability. Annu Rev Stat Appl 5:25-47, 2018.

Wang C, Louis TA, Henderson NC, Weiss CO, Varadhan R: beanz: An R package for Bayesian analysis of heterogeneous treatment effects with a graphical user interface. J Stat Software 85(7):JSSv085i07, 2018.

Aidan McDermott (go to top of document)

Scharfstein DO, Steingrimsson J, McDermott A, Wang C, Ray S, Campbell A, Nunes E, Matthews A: Global sensitivity analysis of randomized trials with nonmonotone missing binary outcomes: Application to studies of substance use disorders. Biometrics 78(2):649-659, 2022.

Duan R, Cao M, Ning Y, Zhu M, Zhang B, McDermott A, Chu H, Zhou X, Moore JH, Ibrahim JG, Scharfstein DO, Chen Y: Global identifiability of latent class models with applications to diagnostic test accuracy studies: A Grobner basis approach. Biometrics 76(1):98-108, 2020.

Scharfstein DO, McDermott A: Global sensitivity analysis of clinical trials with missing patient-reported outcomes. Stat Methods Med Res 28(5):1439-1456, 2019.

Scharfstein D, McDermott A, Diaz I, Carone M, Lunardon N, Turkoz I: Global sensitivity analysis for repeated measures studies with informative drop-out: A semi-parametric approach. Biometrics 74(1):207-219, 2018.

John McGready (go to top of document)

Pasqualino MM, Shaikh S, McGready J, Islam MT, Ali H, Ahmed T, West KP Jr, Alam M, Hossain MI, Labrique AB, Palmer AC: An egg intervention improves dietary intakes but does not fill intake gaps for multiple micronutrients among infants in rural Bangladesh. J Nutr 153(4):1199-1210, 2023.

Zale AD, Abusamaan MS, McGready J, Mathioudakis N: Prediction of next glucose measurement in hospitalized patients by comparing various regression methods: retrospective cohort study. JMIR Form Res 7:e41577, 2023.

Abbey EJ, McGready J, Oh E, Simonsick EM, Mammen JSR: Thyroid hormone use and overuse in dementia: results from the Health, Aging and Body Composition Study. J Am Geriatr Soc 70(11):3308-3311, 2022.

Abbey EJ, McGready J, Sokoll LJ, Simonsick EM, Mammen JSR: Free thyroxine distinguishes subclinical hypothyroidism from other aging-related changes in those with isolated elevated thyrotropin. Front Endocrinol 13:858332, 2022.

Zale AD, Abusamaan MS, McGready J, Mathioudakis N: Development and validation of a machine learning model for classification of next glucose measurement in hospitalized patients. EClinicalMedicine 44:101290, 2022.

Abbey EJ, McGready J, Ferrucci L, Simonsick EM, Mammen JSR: Thyroid hormone supplementation and all-cause mortality in community-dwelling older adults: results from the Baltimore Longitudinal Study of Aging. J Am Geriatr Soc 69(5):1283-1290, 2021.

Beres LK, Mody A, Sikombe K, Nicholas LH, Schwartz S, Eshun-Wilson I, Somwe P, Simbeza S, Pry JM, Kaumba P, McGready J, Holmes CB, Bolton-Moore C, Sikazwe I, Denison JA, Geng EH: The effect of tracer contact on return to care among adult, "lost to follow-up" patients living with HIV in Zambia: an instrumental variable analysis. J Int AIDS Soc 24(12):e25853, 2021.

Beres LK, Schwartz S, Simbeza S, McGready J, Eshun-Wilson I, Mwamba C, Sikombe K, Topp SM, Somwe P, Mody A, Mukamba N, Ehrenkranz PD, Padian N, Pry J, Moore CB, Holmes CB, Sikazwe I, Denison JA, Geng E: Patterns and predictors of incident return to HIV care among traced, disengaged patients in Zambia: analysis of a prospective cohort. J Acquir Immune Defic Syndr 86(3):313-322, 2021.

Hoover-Fong JE, Alade AY, Hashmi SS, Hecht JT, Legare JM, Little ME, Liu C, McGready J, Modaff P, Pauli RM, Rodriguez-Buritica DF, Schulze KJ, Serna ME, Smid CJ, Bober MB: Achondroplasia Natural History Study (CLARITY): a multicenter retrospective cohort study of achondroplasia in the United States. Genet Med 23(8):1498-1505, 2021.

Hoover-Fong JE, Schulze KJ, Alade AY, Bober MB, Gough E, Hashmi SS, Hecht JT, Legare JM, Little ME, Modaff P, Pauli RM, Rodriguez-Buritica DF, Serna ME, Smid C, Liu C, McGready J: Growth in achondroplasia including stature, weight, weight-for-height and head circumference from CLARITY: achondroplasia natural history study-a multi-center retrospective cohort study of achondroplasia in the US. Orphanet J Rare Dis 16(1):522, 2021.

Mathioudakis NN, Abusamaan MS, Shakarchi AF, Sokolinsky S, Fayzullin S, McGready J, Zilbermint M, Saria S, Golden SH: Development and validation of a machine learning model to predict near-term risk of iatrogenic hypoglycemia in hospitalized patients. JAMA Netw Open 4(1):e2030913, 2021.

Merrill KG, Campbell JC, Decker MR, McGready J, Burke VM, Mwansa JK, Miti S, Frimpong C, Kennedy CE, Denison JA: Past-year violence victimization is associated with viral load failure among HIV-positive adolescents and young adults. AIDS Behav 25(5):1373-1383, 2021.

Mustafa Ali MK, Sabha MM, Mustafa SK, Banifadel M, Ghazaleh S, Aburayyan KM, Ghanim MT, Awad MT, Gekonde DN, Ambati AR, Ramahi A, Elzanaty AM, Nesheiwat Z, Shastri PM, Al-Sarie M, McGready J: Hospitalization and post-hospitalization outcomes among teaching internal medicine, employed hospitalist, and locum tenens hospitalist services in a tertiary center: a prospective cohort study. J Gen Intern Med 36(10):3040-3051, 2021.

Beres LK, Merrill KG, McGready J, Denison JA, Schwartz S, Sikazwe I, Decker MR: Intimate partner violence polyvictimisation and HIV among coupled women in Zambia: Analysis of a population-based survey. Glob Public Health 15(4):558-570, 2020.

Hoover-Fong J, Alade AY, Ain M, Berkowitz I, Bober M, Carter E, Hecht J, Hoerschemeyer D, Krakow D, MacCarrick G, Mackenzie WG, Mendoza R, Okenfuss E, Popplewell D, Raggio C, Schulze K, McGready J: Blood pressure in adults with short stature skeletal dysplasias. Am J Med Genet A 182(1):150-161, 2020.

Merrill KG, Campbell JC, Decker MR, McGready J, Burke VM, Mwansa JK, Miti S, Frimpong C, Kennedy CE, Denison JA: Prevalence of physical and sexual violence and psychological abuse among adolescents and young adults living with HIV in Zambia. PLoS One 15(6):e0235203, 2020.

Verma S, Zegar J, Hoge C, McGready J, Sidana A: Multiparametric MRI-ultrasound fusion prostate biopsy in patients without prior diagnosis of prostate cancer: beyond centers of excellence. Aging Male 23(5):1570-1575, 2020.

Wood SN, Kennedy SR, Akumu I, Tallam C, Asira B, Hameeduddin Z, McGready J, Zimmerman LA, Kennedy CE, Glass N, Decker MR: Reproductive coercion among intimate partner violence survivors in Nairobi. Stud Fam Plann 51(4):343-360, 2020.

Collaco JM, Appel LJ, McGready J, Cutting GR: The relationship of lung function with ambient temperature. PLoS One 13(1):e0191409, 2018.

John Muschelli (go to top of document)

Savonen C, Wright C, Hoffman AM, Muschelli J, Cox K, Tan FJ, Leek JT: Open-source Tools for Training Resources - OTTR. J Stat Data Sci Educ 31(1):57-65, 2023.

Zhao C, Tapera TM, Bagautdinova J, Bourque J, Covitz S, Gur RE, Gur RC, Larsen B, Mehta K, Meisler SL, Murtha K, Muschelli J, Roalf DR, Sydnor VJ, Valcarcel AM, Shinohara RT, Cieslak M, Satterthwaite TD: ModelArray: An R package for statistical analysis of fixel-wise data. Neuroimage 271:120037, 2023.

Karas M, Muschelli J, Leroux A, Urbanek JK, Wanigatunga AA, Bai J, Crainiceanu CM, Schrack JA: Comparison of accelerometry-based measures of physical activity: retrospective observational data analysis study. JMIR mHealth uHealth 10(7):e38077, 2022.

Pham DD, Muschelli J, Mejia AF: ciftiTools: A package for reading, writing, visualizing, and manipulating CIFTI files in R. Neuroimage 250:118877, 2022.

Qi G, Dutta D, Leroux A, Ray D, Muschelli J, Crainiceanu C, Chatterjee N: Genome-wide association studies of 27 accelerometry-derived physical activity measurements identified novel loci and genetic mechanisms. Genet Epidemiol 46(2):122-138, 2022.

Redd AD, Peetluk LS, Jarrett BA, Hanrahan C, Schwartz S, Rao A, Jaffe AE, ..., Muschelli J, et al: Curating the evidence about COVID-19 for frontline public health and clinical care: the Novel Coronavirus Research Compendium. Public Health Rep 137(2):197-202, 2022.

Sharrock MF, Mould WA, Hildreth M, Ryu EP, Walborn N, Awad IA, Hanley DF, Muschelli J: Bayesian deep learning outperforms clinical trial estimators of intracerebral and intraventricular hemorrhage volume. J Neuroimaging 32(5):968-976, 2022.

Smirnova E, Mallow C, Muschelli J, Shao Y, Thiboutot J, Lam A, Rule AM, Crainiceanu C, Yarmus L: Predictive performance of selected breath volatile organic carbon compounds in stage 1 lung cancer. Transl Lung Cancer Res 11(6):1009-1018, 2022.

Bennett TD, Moffitt RA, Hajagos JG, ..., Muschelli J, et al: Clinical characterization and prediction of clinical severity of SARS-CoV-2 infection among US adults using data from the US National COVID Cohort Collaborative. JAMA Netw Open (7):e2116901, 2021.

Bowring MG, Wang Z, Xu Y, Betz J, Muschelli J, Garibaldi BT, Zeger SL: Outcome-stratified analysis of biomarker trajectories for patients infected with severe acute respiratory syndrome coronavirus 2. Am J Epidemiol 190(10):2094-2106, 2021.

Broll S, Urbanek J, Buchanan D, Chun E, Muschelli J, Punjabi NM, Gaynanova I: Interpreting blood GLUcose data with R package iglu. PLoS One 16(4):e0248560, 2021.

Eshaghzadeh Torbati M, Minhas DS, Ahmad G, O'Connor EE, Muschelli J, Laymon CM, Yang Z, Cohen AD, Aizenstein HJ, Klunk WE, Christian BT, Hwang SJ, Crainiceanu CM, Tudorascu DL: A multi-scanner neuroimaging data harmonization using RAVEL and ComBat. Neuroimage 245:118703, 2021.

Garibaldi BT, Fiksel J, Muschelli J, Robinson ML, Rouhizadeh M, Perin J, Schumock G, Nagy P, Gray JH, Malapati H, Ghobadi-Krueger M, Niessen TM, Kim BS, Hill PM, Ahmed MS, Dobkin ED, Blanding R, Abele J, Woods B, Harkness K, Thiemann DR, Bowring MG, Shah AB, Wang MC, Bandeen-Roche K, Rosen A, Zeger SL, Gupta A: Patient trajectories among persons hospitalized for COVID-19 : a cohort study. Ann Intern Med 174(1):33-41, 2021.

Leroux A, Xu S, Kundu P, Muschelli J, Smirnova E, Chatterjee N, Crainiceanu C: Quantifying the predictive performance of objectively measured physical activity on mortality in the UK Biobank. J Gerontol A Biol Sci Med Sci 76(8):1486-1494, 2021.

Scully EP, Schumock G, Fu M, Massaccesi G, Muschelli J, Betz J, Klein EY, West NE, Robinson M, Garibaldi BT, Bandeen-Roche K, Zeger S, Klein SL, Gupta A: Sex and gender differences in testing, hospital admission, clinical presentation, and drivers of severe outcomes from COVID-19. Open Forum Infect Dis 8(9):ofab448, 2021.

Sharrock MF, Mould WA, Ali H, Hildreth M, Awad IA, Hanley DF, Muschelli J: 3D deep neural network segmentation of intracerebral hemorrhage: development and validation for clinical trials. Neuroinformatics 19(3):403-415, 2021.

Tustison NJ, Cook PA, Holbrook AJ, Johnson HJ, Muschelli J, Devenyi GA, Duda JT, Das SR, Cullen NC, Gillen DL, Yassa MA, Stone JR, Gee JC, Avants BB: The ANTsX ecosystem for quantitative biological and medical imaging. Sci Rep 11(1):9068, 2021.

Wang G, Muschelli J, Lindquist MA: Moderated t-tests for group-level fMRI analysis. Neuroimage 237:118141, 2021.

Wongvibulsin S, Garibaldi BT, Antar AAR, Wen J, Wang MC, Gupta A, Bollinger R, Xu Y, Wang K, Betz JF, Muschelli J, Bandeen-Roche K, Zeger SL, Robinson ML: Development of Severe COVID-19 Adaptive Risk Predictor (SCARP), a calculator to predict severe disease or death in hospitalized patients with COVID-19. Ann Intern Med 174(6):777-785, 2021.

Wrobel J, Muschelli J, Leroux A: Diurnal physical activity patterns across ages in a large UK based cohort: the UK Biobank study. Sensors 21(4):1545, 2021.

Gherman A, Muschelli J, Caffo B, Crainiceanu C: Rxnat: An open-source R package for XNAT-based repositories. Front Neuroinform 14:572068, 2020.

Hannawi Y, Muschelli J, Mulder M, Sharrock M, Storm C, Leithner C, Crainiceanu CM, Stevens RD: Postcardiac arrest neurological prognostication with quantitative regional cerebral densitometry. Resuscitation 154:101-109, 2020.

Hansen BM, Ullman N, Muschelli J, Norrving B, Dlugash R, Avadhani R, Awad I, Zuccarello M, Ziai WC, Hanley DF, Thompson RE, Lindgren A, MISTIE and CLEAR Investigators: Relationship of white matter lesions with intracerebral hemorrhage expansion and functional outcome: MISTIE II and CLEAR III. Neurocrit Care 33(2):516-524, 2020.

Muschelli J: ROC and AUC with a binary predictor: a potentially misleading metric. J Classif 37(3):696-708, 2020.

Rothstein JD, Caulfield LE, Broaddus-Shea ET, Muschelli J, Gilman RH, Winch PJ: "The doctor said formula would help me": Health sector influences on use of infant formula in peri-urban Lima, Peru. Soc Sci Med 244:112324, 2020.

Ryan SM, Vestal B, Maier LA, Carlson NE, Muschelli J: Template creation for high-resolution computed tomography scans of the lung in R software. Acad Radiol 27(8):e204-e215, 2020.

Valcarcel AM, Muschelli J, Pham DL, Martin ML, Yushkevich P, Brandstadter R, Patterson KR, Schindler MK, Calabresi PA, Bakshi R, Shinohara RT: TAPAS: A Thresholding Approach for Probability Map Automatic Segmentation in Multiple Sclerosis. Neuroimage Clin 27:102256, 2020.

Ding T, Cohen AD, O'Connor EE, Karim HT, Crainiceanu A, Muschelli J, Lopez O, Klunk WE, Aizenstein HJ, Krafty R, Crainiceanu CM, Tudorascu DL: An improved algorithm of white matter hyperintensity detection in elderly adults. Neuroimage Clin 25:102151, 2019.

Muschelli J: Recommendations for processing head CT data. Front Neuroinform 13:61, 2019.

Muschelli J, Gherman A, Fortin JP, Avants B, Whitcher B, Clayden JD, Caffo BS, Crainiceanu CM: Neuroconductor: an R platform for medical imaging analysis. Biostatistics 20(2):218-239, 2019.

Valcarcel AM, Linn KA, Khalid F, Vandekar SN, Tauhid S, Satterthwaite TD, Muschelli J, Martin ML, Bakshi R, Shinohara RT: A dual modeling approach to automatic segmentation of cerebral T2 hyperintensities and T1 black holes in multiple sclerosis. Neuroimage Clin 20:1211-1221, 2018.

Commowick O, Istace A, Kain M, Laurent B, Leray F, Simon M, Pop SC, Girard P, Ameli R, Ferre JC, Kerbrat A, Tourdias T, Cervenansky F, Glatard T, Beaumont J, Doyle S, Forbes F, Knight J, Khademi A, Mahbod A, Wang C, McKinley R, Wagner F, Muschelli J, Sweeney E, et al: Objective evaluation of multiple sclerosis lesion segmentation using a data management and processing infrastructure. Sci Rep 8(1):13650, 2018.

Haakonsen Smith C, Turbitt E, Muschelli J, Leonard L, Lewis KL, Freedman B, Muratori M, Biesecker BB: Feasibility of coping effectiveness training for caregivers of children with autism spectrum disorder: a genetic counseling intervention. J Genet Couns 27(1):252-262, 2018.

Kickingereder P, Neuberger U, Bonekamp D, Piechotta PL, Gotz M, Wick A, Sill M, Kratz A, Shinohara RT, Jones DTW, Radbruch A, Muschelli J, Unterberg A, Debus J, Schlemmer HP, Herold-Mende C, Pfister S, von Deimling A, Wick W, Capper D, Maier-Hein KH, Bendszus M: Radiomic subtyping improves disease stratification beyond key molecular, clinical, and standard imaging characteristics in patients with glioblastoma. Neuro Oncol 20(6):848-857, 2018.

Muschelli J, Sweeney E, Crainiceanu CM: freesurfer: Connecting the Freesurfer software with R. F1000Res 7:599, 2018.

Valcarcel AM, Linn KA, Vandekar SN, Satterthwaite TD, Muschelli J, Calabresi PA, Pham DL, Martin ML, Shinohara RT: MIMoSA: an automated method for intermodal segmentation analysis of multiple sclerosis brain lesions. J Neuroimaging 28(4):389-398, 2018.

Akihiko Nishimura (go to top of document)

Schuemie MJ, Bu F, Nishimura A, Suchard MA: Adjusting for both sequential testing and systematic error in safety surveillance using observational data: empirical calibration and MaxSPRT. Stat Med 42(5):619-631, 2023.

Nishimura A, Xie J, Kostka K, Duarte-Salles T, et al: International cohort study indicates no association between alpha-1 blockers and susceptibility to COVID-19 in benign prostatic hyperplasia patients. Front Pharmacol 13:945592, 2022.

Wang Z, Bowring MG, Rosen A, Garibaldi B, Zeger S, Nishimura A: Learning and predicting from dynamic models for COVID-19 patient monitoring. Stat Sci 37(2):251-265, 2022.

Koenecke A, Powell M, Xiong R, Shen Z, Fischer N, Huq S, Khalafallah AM, Trevisan M, Sparen P, Carrero JJ, Nishimura A, Caffo B, Stuart EA, Bai R, Staedtke V, Thomas DL, Papadopoulos N, Kinzler KW, Vogelstein B, Zhou S, Bettegowda C, Konig MF, Mensh BD, Vogelstein JT, Athey S: Alpha-1 adrenergic receptor antagonists to prevent hyperinflammation and death from lower respiratory tract infection. Elife 10:e61700, 2021.

Powell M, Koenecke A, Byrd JB, Nishimura A, Konig MF, Xiong R, Mahmood S, Mucaj V, Bettegowda C, Rose L, Tamang S, Sacarny A, Caffo B, Athey S, Stuart EA, Vogelstein JT: Ten rules for conducting retrospective pharmacoepidemiological analyses: example COVID-19 study. Front Pharmacol 12:700776, 2021.

Zhang Z, Nishimura A, Bastide P, Ji X, Payne RP, Goulder P, Lemey P, Suchard MA: Large-scale inference of correlation among mixed-type biological traits with phylogenetic multivariate probit models. Ann Appl Stat 15(1):230-251, 2021.

Duan LL, Young AL, Nishimura A, Dunson DB: Bayesian constraint relaxation. Biometrika 107(1):191-204, 2020.

Ji X, Zhang Z, Holbrook A, Nishimura A, Baele G, Rambaut A, Lemey P, Suchard MA: Gradients do grow on trees: a linear-time O(N)-dimensional gradient for statistical phylogenetics. Mol Biol Evol 37(10):3047-3060, 2020.

Nishimura A, Dunson D: Recycling intermediate steps to improve Hamiltonian Monte Carlo. Bayesian Analysis 15(4):1087-1108, 2020.

Nishimura A, Dunson DB, Lu J: Discontinuous Hamiltonian Monte Carlo for discrete parameters and discontinuous likelihoods. Biometrika 107(2):365-380, 2020.

Elizabeth Ogburn (go to top of document)

Avolio LN, Smith TJS, Navas-Acien A, Kruczynski K, Pisanic N, Randad PR, Detrick B, Fry RC, van Geen A, Goessler W, Karron RA, Klein SL, Ogburn EL, et al: The Pregnancy, Arsenic, and Immune Response (PAIR) Study in rural northern Bangladesh. Paediatr Perinat Epidemiol 37(2):165-178, 2023.

Casey JA, Kioumourtzoglou MA, Ogburn EL, Melamed A, Shaman J, Kandula S, Neophytou A, Darwin KC, Sheffield JS, Gyamfi-Bannerman C: Long-term fine particulate matter concentrations and prevalence of severe acute respiratory syndrome coronavirus 2: differential relationships by socioeconomic status among pregnant individuals in New York City. Am J Epidemiol 191(11):1897-1905, 2022.

Di Stefano L, Ogburn EL, Ram M, Scharfstein DO, Li T, et al: Hydroxychloroquine/chloroquine for the treatment of hospitalized patients with COVID-19: An individual participant data meta-analysis. PLoS One 17(9):e0273526, 2022.

Ogburn EL, Cai J, Kuchibhotla AK, Berk RA, Buja A: Contribution to the discussion of 'Assumption-lean inference for generalised linear model parameters' by Vansteelandt and Dukes. JRSS-B 84(3):715-716, 2022.

Thorpe LE, Adhikari S, Lopez P, ..., Ogburn EL, et al: Neighborhood socioeconomic environment and risk of type 2 diabetes: associations and mediation through food environment pathways in three independent study samples. Diabetes Care 45(4):798-810, 2022.

Clipman SJ, Mehta SH, Srikrishnan AK, Zook KJ, Duggal P, Mohapatra S, Shanmugam S, Nandagopal P, Kumar MS, Ogburn E, Lucas GM, Latkin CA, Solomon SS: Role of direct and indirect social and spatial ties in the diffusion of HIV and HCV among people who inject drugs: A cross-sectional community-based network analysis in New Delhi, India. Elife 10:e69174, 2021.

Haendel MA, Chute CG, Bennett TD, ..., N3C Consortium (includes Ogburn E): The National COVID Cohort Collaborative (N3C): Rationale, design, infrastructure, and deployment. J Am Med Inform Assoc 28(3):427-443, 2021.

Lee Y, Ogburn EL: Network dependence can lead to spurious associations and invalid inference. JASA 116(535):1060-1074, 2021.

Ogburn EL, Rudolph KE, Morello-Frosch R, Khan A, Casey JA: A warning about using predicted values from regression models for epidemiologic inquiry. Am J Epidemiol 190(6):1142-1147, 2021.

Ogburn EL, Shpitser I: Causal modelling: the two cultures. Observational Studies 7(1):179-183, 2021.

Kimmel SE, Califf RM, Dean NE, Goodman SN, Ogburn EL: Editorial: COVID-19 clinical trials: a teachable moment for improving our research infrastructure and relevance. Ann Intern Med 173(8):652-653, 2020.

Ogburn EL, Bierer BE, Brookmeyer R, Choirat C, Dean NE, De Gruttola V, Ellenberg SS, Halloran ME, Hanley DF Jr, Lee JK, Wang R, Scharfstein DO: Comment: Aggregating data from COVID-19 trials. Science 368(6496):1198-1199, 2020.

Ogburn EL, Shpitser I, Lee Y: Causal inference, social networks and chain graphs. JRSS-A 183(4):1659-1676, 2020.

Solomon SS, Solomon S, McFall AM, Srikrishnan AK, Anand S, Verma V, Vasudevan CK, Balakrishnan P, Ogburn EL, Moulton LH, Kumar MS, Sachdeva KS, Laeyendecker O, Celentano DD, Lucas GM, Mehta SH, Indian National Collaboration on AIDS Study: Integrated HIV testing, prevention, and treatment intervention for key populations in India: a cluster-randomised trial. Lancet HIV 6(5):e283-e296, 2019.

Wang B, Ogburn EL, Rosenblum M: Analysis of covariance in randomized trials: More precision and valid confidence intervals, without model assumptions. Biometrics 75(4):1391-1400, 2019.

Casey JA, Gemmill A, Karasek D, Ogburn EL, Goin DE, Morello-Frosch R: Increase in fertility following coal and oil power plant retirements in California. Environ Health 17(1):44, 2018.

Casey JA, Karasek D, Ogburn EL, Goin DE, Dang K, Braveman PA, Morello-Frosch R: Retirements of coal and oil power plants in California: association with reduced preterm birth among populations nearby. Am J Epidemiol 187(8):1586-1594, 2018.

Chen OY, Crainiceanu C, Ogburn EL, Caffo BS, Wager TD, Lindquist MA: High-dimensional multivariate mediation with application to neuroimaging data. Biostatistics 19(2):121-136, 2018.

Chathurangi Pathiravasan (go to top of document)

Shapira-Daniels A, Kornej J, Spartano NL, Wang X, Zhang Y, Pathiravasan CH, Liu C, Trinquart L, Borrelli B, McManus DD, Murabito JM, Benjamin EJ, Lin H: Step count, self-reported physical activity, and predicted 5-year risk of atrial fibrillation: cross-sectional analysis. J Med Internet Res 25:e43123, 2023.

Hammond MM, Zhang Y, Pathiravasan CH, Lin H, Sardana M, Trinquart L, Benjamin EJ, Borrelli B, Manders ES, Fusco K, Kornej J, Spartano NL, Kheterpal V, Nowak C, McManus DD, Liu C, Murabito JM: Relations between BMI trajectories and habitual physical activity measured by a smartwatch in the electronic cohort of the Framingham Heart Study: Cohort Study. JMIR Cardio 6(1):e32348, 2022.

Pathiravasan CH, Zhang Y, Wang X, Trinquart L, Benjamin EJ, Borrelli B, McManus DD, Kheterpal V, Lin H, Spartano NL, Schramm E, Liu C, Murabito JM: Factors associated with long-term use of digital devices in the electronic Framingham Heart Study. NPJ Digit Med 5(1):195, 2022.

Zhang Y, Pathiravasan CH, Hammond MM, Liu H, Lin H, Sardana M, Trinquart L, Borrelli B, Manders ES, Kornej J, Spartano NL, Nowak C, Kheterpal V, Benjamin EJ, McManus DD, Murabito JM, Liu C: Comparison of daily routines between middle-aged and older participants with and those without diabetes in the electronic Framingham Heart Study: Cohort Study. JMIR Diabetes 7(1):e29107, 2022.

Ding EY, Pathiravasan CH, Schramm E, Borrelli B, Liu C, Trinquart L, Kornej J, Benjamin EJ, Murabito JM, McManus DD: Design, deployment, and usability of a mobile system for cardiovascular health monitoring within the electronic Framingham Heart Study. Cardiovasc Digit Health J 2(3):171-178, 2021.

Pathiravasan CH, Zhang Y, Trinquart L, Benjamin EJ, Borrelli B, McManus DD, Kheterpal V, Lin H, Sardana M, Hammond MM, Spartano NL, Dunn AL, Schramm E, Nowak C, Manders ES, Liu H, Kornej J, Liu C, Murabito JM: Adherence of mobile app-based surveys and comparison with traditional surveys: eCohort Study. J Med Internet Res 23(1):e24773, 2021.

Kornej J, Murabito JM, Zhang Y, Liu C, Trinquart L, Sardana M, Manders ES, Hammond MM, Spartano NL, Pathiravasan CH, Wang X, Borrelli B, McManus DD, Benjamin EJ, Lin H: No evidence of association between habitual physical activity and ECG traits: Insights from the electronic Framingham Heart Study. Cardiovasc Digit Health 3(1):56-58, 2021.

Sardana M, Lin H, Zhang Y, Liu C, Trinquart L, Benjamin EJ, Manders ES, Fusco K, Kornej J, Hammond MM, Spartano N, Pathiravasan CH, Kheterpal V, Nowak C, Borrelli B, Murabito JM, McManus DD: Association of habitual physical activity with home blood pressure in the electronic Framingham Heart Study (eFHS): Cross-sectional Study. J Med Internet Res 23(6):e25591, 2021.

Lin H, Sardana M, Zhang Y, Liu C, Trinquart L, Benjamin EJ, Manders ES, Fusco K, Kornej J, Hammond MM, Spartano NL, Pathiravasan CH, Kheterpal V, Nowak C, Borrelli B, Murabito JM, McManus DD: Association of habitual physical activity with cardiovascular disease risk. Circ Res 127(10):1253-1260, 2020.

Roger Peng (go to top of document)

Grant T, Lilley T, McCormack MC, Rathouz PJ, Peng R, Keet CA, Rule A, Davis M, Balcer-Whaley S, Newman M, Matsui EC: Indoor environmental exposures and obstructive lung disease phenotypes among children with asthma living in poor urban neighborhoods. J Allergy Clin Immunol 151(3):716-722, 2023.

Grant TL, McCormack MC, Peng RD, Keet CA, Rule AM, Davis MF, Newman M, Balcer-Whaley S, Matsui EC: Comprehensive home environmental intervention did not reduce allergen concentrations or controller medication requirements among children in Baltimore. J Asthma 60(3):625-634, 2023.

Pollack CE, Roberts LC, Peng RD, Cimbolic P, Judy D, Balcer-Whaley S, Grant T, Rule A, Deluca S, Davis MF, Wright RJ, Keet CA, Matsui EC: Association of a housing mobility program with childhood asthma symptoms and exacerbations. JAMA 329(19):1671-1681, 2023.

Raju S, Woo H, Koehler K, Fawzy A, Liu C, Putcha N, Balasubramanian A, Peng RD, Lin CT, Lemoine C, Wineke J, Berger RD, Hansel NN, McCormack MC: Indoor air pollution and impaired cardiac autonomic function in chronic obstructive pulmonary disease. Am J Respir Crit Care Med 207(6):721-730, 2023.

Woo H, Koehler K, Putcha N, Lorizio W, McCormack M, Peng R, Hansel NN: Principal stratification analysis to determine health benefit of indoor air pollution reduction in a randomized environmental intervention in COPD: Results from the CLEAN AIR study. Sci Total Environ 868:161573, 2023.

Belz DC, Woo H, Putcha N, Paulin LM, ..., Peng RD, et al: Ambient ozone effects on respiratory outcomes among smokers modified by neighborhood poverty: an analysis of SPIROMICS AIR. Sci Total Environ 829:154694, 2022.

Chen C, Chan A, Dominici F, Peng RD, Sabath B, Di Q, Schwartz J, Bell ML: Do temporal trends of associations between short-term exposure to fine particulate matter (PM 2.5) and risk of hospitalizations differ by sub-populations and urbanicity-a study of 968 U.S. counties and the Medicare population. Environ Res 206:112271, 2022.

Fandino-Del-Rio M, Matsui EC, Peng RD, Meeker JD, Quiros-Alcala L: Phthalate biomarkers and associations with respiratory symptoms and healthcare utilization among low-income urban children with asthma. Environ Res 212(Pt B):113239, 2022.

Ferradas C, Cotter C, Shahbazian JH, Iverson SA, Baron P, Misic AM, Brazil AM, Rankin SC, Nachamkin I, Ferguson JM, Peng RD, Bilker WB, Lautenbach E, Morris DO, Lescano AG, Davis MF: Risk factors for antimicrobial resistance among Staphylococcus isolated from pets living with a patient diagnosed with methicillin-resistant Staphylococcus aureus infection. Zoonoses Public Health 69(5):550-559, 2022.

Hansel NN, Putcha N, Woo H, Peng R, Diette GB, Fawzy A, Wise RA, Romero K, Davis MF, Rule AM, Eakin MN, Breysse PN, McCormack MC, Koehler K: Randomized clinical trial of air cleaners to improve indoor air quality and chronic obstructive pulmonary disease health: results of the CLEAN AIR Study. Am J Respir Crit Care Med 205(4):421-430, 2022.

Keller JP, Dunlop JH, Ryder NA, Peng RD, Keet CA: Long-term ambient air pollution and childhood eczema in the United States. Environ Health Perspect 130(5):57702, 2022.

Krall JR, Keller JP, Peng RD: Assessing the health estimation capacity of air pollution exposure prediction models. Environ Health 21(1):35, 2022.

McCormack MC, Balasubramanian A, Matsui EC, Peng RD, Wise RA, Keet CA: Race, lung function, and long-term mortality in the National Health and Nutrition Examination Survey III. Am J Respir Crit Care Med 205(6):723-724, 2022.

Peng RD, Liu JC, McCormack MC, Mickley LJ, Bell ML: Estimating the health effects of environmental mixtures using principal stratification. Stat Med 41(10):1815-1828, 2022.

Peng RD, Parker HS: Perspective on data science. Annu Rev Stat Appl 9:1-20, 2022.

Rodriguez EM, Pollack CE, Keet C, Peng RD, Balcer-Whaley S, Custer J, Cimbolic P, Matsui EC: Neighborhoods, caregiver stress, and children's asthma symptoms. J Allergy Clin Immunol Pract 10(4):1005-1012, 2022.

Allotey JA, Boyle M, Sapkota A, Zhu L, Peng RD, Garza MA, Quiros-Alcala L: Determinants of phthalate exposure among a U.S.-based group of Latino workers. Int J Hyg Environ Health 234:113739, 2021.

Chen C, Warrington JA, Dominici F, Peng RD, Esty DC, Bobb JF, Bell ML: Temporal variation in association between short-term exposure to fine particulate matter and hospitalisations in older adults in the USA: a long-term time-series analysis of the US Medicare dataset. Lancet Planet Health 5(8):e534-e541, 2021.

Keet C, Pistiner M, Plesa M, Szelag D, Shreffler W, Wood R, Dunlop J, Peng R, Dantzer J, Togias A: Age and eczema severity, but not family history, are major risk factors for peanut allergy in infancy. J Allergy Clin Immunol 147(3):984-991, 2021.

Keet C, Plesa M, Szelag D, Shreffler W, Wood R, Dunlop J, Peng R, Dantzer J, Hamilton RG, Togias A, Pistiner M: Ara h 2-specific IgE is superior to whole peanut extract-based serology or skin prick test for diagnosis of peanut allergy in infancy. J Allergy Clin Immunol 147(3):977-983, 2021.

McGowan EC, Keller JP, Muir AB, Dellon ES, Peng R, Keet CA, Jensen ET: Distance to pediatric gastroenterology providers is associated with decreased diagnosis of eosinophilic esophagitis in rural populations. J Allergy Clin Immunol Pract 9(12):4489-4492, 2021.

Peng RD, Hicks SC: Reproducible research: a retrospective. Annu Rev Public Health 42:79-93, 2021.

Sadreameli SC, Ahmed A, Curtin-Brosnan J, Perzanowski MS, Phipatanakul W, Balcer-Whaley S, Divjan A, Peng RD, Newman M, Cunningham A, Bollinger ME, Wise RA, Miller RL, Matsui EC: Indoor environmental factors may modify the response to mouse allergen reduction among mouse-sensitized and exposed children with persistent asthma. J Allergy Clin Immunol Pract 9(12):4402-4409, 2021.

Quiros-Alcala L, Hansel NN, McCormack M, Calafat AM, Ye X, Peng RD, Matsui EC: Exposure to bisphenols and asthma morbidity among low-income urban children with asthma. J Allergy Clin Immunol 147(2):577-586, 2021.

Yan M, Wilson A, Dominici F, Wang Y, Al-Hamdan M, Crosson W, Schumacher A, Guikema S, Magzamen S, Peel JL, Peng RD, Anderson GB: Tropical cyclone exposures and risks of emergency medicare hospital admission for cardiorespiratory diseases in 175 urban United States counties, 1999-2010. Epidemiology 32(3):315-326, 2021.

Ahmed A, Sadreameli SC, Curtin-Brosnan J, Grant T, Phipatanakul W, Perzanowski M, Balcer-Whaley S, Peng R, Newman M, Cunningham A, Divjan A, Bollinger ME, Wise RA, Miller R, Chew G, Matsui EC: Do baseline asthma and allergic sensitization characteristics predict responsiveness to mouse allergen reduction? J Allergy Clin Immunol Pract 8(2):596-602, 2020.

Anderson GB, Ferreri J, Al-Hamdan M, Crosson W, Schumacher A, Guikema S, Quiring S, Eddelbuettel D, Yan M, Peng RD: Assessing United States county-level exposure for research on tropical cyclones and human health. Environ Health Perspect 128(10):107009, 2020.

Dunlop JH, Keller JP, Peng RD, Keet CA: The effect of season of birth on atopic dermatitis and food allergy. Ann Allergy Asthma Immunol 125(2):221-223, 2020.

Grant T, Phipatanakul W, Perzanowski M, Balcer-Whaley S, Peng RD, Curtin-Brosnan J, Newman M, Cunningham A, Divjan A, Bollinger ME, Wise RA, Matsui EC: Reduction in mouse allergen exposure is associated with greater lung function growth. J Allergy Clin Immunol 145(2):646-653, 2020.

Jabre NA, Keet CA, McCormack M, Peng R, Balcer-Whaley S, Matsui EC: Material hardship and indoor allergen exposure among low-income, urban, minority children with persistent asthma. J Community Health 45(5):1017-1026, 2020.

Matsui EC, Peng RD: 2020 updated asthma guidelines: indoor allergen reduction. J Allergy Clin Immunol 146(6):1283-1285, 2020.

McGowan EC, Keller JP, Dellon ES, Peng R, Keet CA: Prevalence and geographic distribution of pediatric eosinophilic esophagitis in the 2012 US Medicaid population. J Allergy Clin Immunol Pract 8(8):2796-2798, 2020.

Paulin LM, Gassett AJ, Alexis NE, Kirwa K, ..., Peng RD, et al: Association of long-term ambient ozone exposure with respiratory morbidity in smokers. JAMA Intern Med 180(1):106-115, 2020.

Tsou PY, McCormack MC, Matsui EC, Peng RD, Diette GB, Hansel NN, Davis MF: The effect of dog allergen exposure on asthma morbidity among inner-city children with asthma. Pediatr Allergy Immunol 31(2):210-213, 2020.

Colston JM, Zaitchik B, Kang G, Penataro Yori P, Ahmed T, Lima A, Turab A, Mduma E, Sunder Shrestha P, Bessong P, Peng RD, Black RE, Moulton LH, Kosek MN: Use of earth observation-derived hydrometeorological variables to model and predict rotavirus infection (MAL-ED): a multisite cohort study. Lancet Planet Health 3(6):e248-e258, 2019. 

Liu JC, Peng RD: The impact of wildfire smoke on compositions of fine particulate matter by ecoregion in the Western US. J Expo Sci Environ Epidemiol 29(6):765-776, 2019.

Matsui EC, Adamson AS, Peng RD: Time's up to adopt a biopsychosocial model to address racial and ethnic disparities in asthma outcomes. J Allergy Clin Immunol 143(6):2024-2025, 2019.

Matsui EC, Pollack CE, Peng RD, Keet CA: Closing the door on social determinants of health and asthma disparities: Not so fast. J Allergy Clin Immunol Pract 7(6):2101-2102, 2019.

McGowan EC, Peng R, Salo PM, Zeldin DC, Keet CA: Cockroach, dust mite, and shrimp sensitization correlations in the National Health and Nutrition Examination Survey. Ann Allergy Asthma Immunol 122(5):536-538, 2019.

Nori-Sarma A, Anderson GB, Rajiva A, ShahAzhar G, Gupta P, Pednekar MS, Son JY, Peng RD, Bell ML: The impact of heat waves on mortality in Northwest India. Environ Res 176:108546, 2019.

Patil P, Peng RD, Leek JT: A visual tool for defining reproducibility and replicability. Nat Hum Behav 3(7):650-652, 2019.

Raju S, Keet CA, Paulin LM, Matsui EC, Peng RD, Hansel NN, McCormack MC: Rural residence and poverty are independent risk factors for chronic obstructive pulmonary disease in the United States. Am J Respir Crit Care Med 199(8):961-969, 2019.

Wu TD, Perzanowski M, Peng RD, Wise RA, Balcer-Whaley S, Newman M, Cunningham A, Phipatanakul W, Matsui EC, McCormack MC: Validation of the maximum symptom day among children with asthma. J Allergy Clin Immunol 143(2):803-805, 2019.

Yan M, Wilson A, Bell ML, Peng RD, Sun Q, Pu W, Yin X, Li T, Anderson GB: The shape of the concentration-response association between fine particulate matter pollution and human mortality in Beijing, China, and its implications for health impact assessment. Environ Health Perspect 127(6):67007, 2019.

Anderson GB, Oleson KW, Jones B, Peng RD: Classifying heatwaves: Developing health-based models to predict high-mortality versus moderate United States heatwaves. Clim Change 146(3-4):439-453, 2018.

Anderson GB, Oleson KW, Jones B, Peng RD: Projected trends in high-mortality heatwaves under different scenarios of climate, population, and adaptation in 82 US communities. Clim Change 146(3-4):455-470, 2018.

Ferreri JM, Peng RD, Bell ML, Liu Y, Li T, Anderson GB: The January 2013 Beijing "Airpocalypse" and its acute effects on emergency and outpatient visits at a Beijing hospital. Air Qual Atmos Health 11(3):301-309, 2018.

Grant T, Dantzer J, Keet C, Peng R, Paigen BJ, Krevans M, Hagberg K, Curtin-Brosnan J, Shreffler W, Matsui EC: Physician-diagnosed eczema is an independent risk factor for incident mouse skin test sensitization in adults. Allergy Asthma Proc 39(4):311-315, 2018.

Keet CA, Keller JP, Peng RD: Long-term coarse particulate matter exposure is associated with asthma among children in Medicaid. Am J Respir Crit Care Med 197(6):737-746, 2018.

Liu JC, Peng RD: Health effect of mixtures of ozone, nitrogen dioxide, and fine particulates in 85 US counties. Air Qual Atmos Health 11(3):311-324, 2018.

Wu TD, Brigham EP, Peng R, Koehler K, Rand C, Matsui EC, Diette GB, Hansel NN, McCormack MC: Overweight/obesity enhances associations between secondhand smoke exposure and asthma morbidity in children. J Allergy Clin Immunol Pract 6(6):2157-2159, 2018.

Michael Rosenblum (go to top of document)

Coleman JS, Diniz CP, Fuchs EJ, Marzinke MA, Aung W, Bakshi RP, Farzadegan H, Bream JH, Nilles TL, Hudson S, Bumpus NN, Schwartz GJ, Rosenblum MA, Rooney JF, Hendrix CW: Interaction of depot medroxyprogesterone acetate and tenofovir disoproxil fumarate/emtricitabine on peripheral blood mononuclear cells and cervical tissue susceptibility to HIV infection and pharmacokinetics. J Acquir Immune Defic Syndr 92(1):89-96, 2023.

Williams N, Rosenblum M, Diaz I: Optimising precision and power by machine learning in randomised trials with ordinal and time-to-event outcomes with an application to COVID-19. JRSS-A 185(4):2156-2178, 2022.

Askenase MH, Goods BA, Beatty HE, Steinschneider AF, ..., Thompson RE, ..., ICHseq Investigators MISTIE III Investigators (includes Rosenblum M): Longitudinal transcriptomics define the stages of myeloid activation in the living human brain after intracerebral hemorrhage. Sci Immunol 6(56):eabd6279, 2021.

Benkeser D, Diaz I, Luedtke A, Segal J, Scharfstein D, Rosenblum M: Improving precision and power in randomized trials for COVID-19 treatments using covariate adjustment, for binary, ordinal, and time-to-event outcomes. Biometrics 77(4):1467-1481, 2021.

Steingrimsson JA, Betz J, Qian T, Rosenblum M: Optimized adaptive enrichment designs for three-arm trials: learning which subpopulations benefit from different treatments. Biostatistics 22(2):283-297, 2021.

Canto MI, Trindade AJ, Abrams J, Rosenblum M, Dumot J, Chak A, Iyer P, Diehl D, Khara HS, Corbett FS, McKinley M, Shin EJ, Waxman I, Infantolino A, Tofani C, Samarasena J, Chang K, Wang B, Goldblum J, Voltaggio L, Montgomery E, Lightdale CJ, Shaheen NJ: Multifocal cryoballoon ablation for eradication of Barrett's esophagus-related neoplasia: a prospective multicenter clinical trial. Am J Gastroenterol 115(11):1879-1890, 2020.

McGinty EE, Stone EM, Kennedy-Hendricks A, Bandara S, Murphy KA, Stuart EA, Rosenblum MA, Daumit GL: Effects of Maryland's Affordable Care Act Medicaid health home waiver on quality of cardiovascular care among people with serious mental illness. J Gen Intern Med 35(11):3148-3158, 2020.

Rosenblum M, Fang EX, Liu H: Optimal, two‐stage, adaptive enrichment designs for randomized trials, using sparse linear programming. JRSS-B 82(3):749-772, 2020.

Diaz I, Colantuoni E, Hanley DF, Rosenblum M: Improved precision in the analysis of randomized trials with survival outcomes, without assuming proportional hazards. Lifetime Data Anal 25(3):439-468, 2019.

Hanley DF, Thompson RE, Rosenblum M, Yenokyan G, ..., Betz JF, Sugar EA, et al: Efficacy and safety of minimally invasive surgery with thrombolysis in intracerebral haemorrhage evacuation (MISTIE III): a randomised, controlled, open-label, blinded endpoint phase 3 trial. Lancet 393(10175):1021-1032, 2019.

Huang EJ, Fang EX, Hanley DF, Rosenblum M: Constructing a confidence interval for the fraction who benefit from treatment, using randomized trial data. Biometrics 75(4):1228-1239, 2019.

Rosenblum M, Wang B: The critical role of statistical analyses in maximizing power gains from covariate-adaptive trial designs. JAMA Nets Open 2(4):e190789, 2019.

Rosenblum MA, Miller P, Reist B, Stuart EA, Thieme M, Louis TA: Adaptive design in surveys and clinical trials: similarities, differences and opportunities for cross‐fertilization. JRSS-A 182(3):963-982, 2019.

Wang B, Ogburn EL, Rosenblum M: Analysis of covariance in randomized trials: More precision and valid confidence intervals, without model assumptions. Biometrics 75(4):1391-1400, 2019.

Wu AW, Weston CM, Ibe CA, Ruberman CF, Bone L, Boonyasai RT, Hwang S, Gentry J, Purnell L, Lu Y, Liang S, Rosenblum M: The Baltimore Community-based Organizations Neighborhood Network: Enhancing Capacity Together (CONNECT) cluster RCT. Am J Prev Med 57(2):e31-e41, 2019.

Fisher A, Rosenblum M, Alzheimer's Disease Neuroimaging Initiative: Stochastic optimization of adaptive enrichment designs for two subpopulations. J Biopharm Stat 28(5):966-982, 2018.

Hemorrhagic Stroke Academia Industry (HEADS) Roundtable Participants (includes Rosenblum M): Basic and translational research in intracerebral hemorrhage: limitations, priorities, and recommendations. Stroke 49(5):1308-1314, 2018.

Hemorrhagic Stroke Academia Industry (HEADS) Roundtable Participants (includes Rosenblum M): Unmet needs and challenges in clinical research of intracerebral hemorrhage. Stroke 49(5):1299-1307, 2018.

Wu AW, Hwang S, Weston CM, Ibe C, Boonyasai RT, Bone L, Basu L, Lief I, Gentry J, Purnell L, Rosenblum M, Baltimore CONNECT Study Team: Baltimore CONNECT: A randomized trial to build partnership between community organizations and a local health system. Prog Community Health Partnersh 12(3):297-306, 2018.

Ingo Ruczinski (go to top of document)

Berube S, Kobayashi T, Wesolowski A, Norris DE, Ruczinski I, Moss WJ, Louis TA: A Bayesian hierarchical model for signal extraction from protein microarrays. Stat Med 42(9):1445-1460, 2023.

Huffaker MF, Kanchan K, Bahnson HT, Ruczinski I, Shankar G, Leung DYM, Baloh C, Du Toit G, Lack G, Nepom GT, Mathias RA: Epidermal differentiation complex genetic variation in atopic dermatitis and peanut allergy. J Allergy Clin Immunol 151(4):1137-1142, 2023.

Li X, Quick C, Zhou H, Gaynor SM, ..., NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium (includes Ruczinski I), et al: Powerful, scalable and resource-efficient meta-analysis of rare variant associations in large whole genome sequencing studies. Nat Genet 55(1):154-164, 2023.

Weinstock JS, Gopakumar J, Burugula BB, ..., NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium (includes Ruczinski I), et al: Aberrant activation of TCL1A promotes stem cell expansion in clonal haematopoiesis. Nature 616(7958):755-763, 2023.

Wong WJ, Emdin C, Bick AG, ..., NHLBI TOPMed Hematology Working Group (includes Ruczinski I), et al: Clonal haematopoiesis and risk of chronic liver disease. Nature 616(7958):747-754, 2023.

Angkeow JW, Monaco DR, Chen A, ..., Ruczinski I, et al: Phage display of environmental protein toxins and virulence factors reveals the prevalence, persistence, and genetics of antibody responses. Immunity 55(6):1051-1066, 2022.

Berube S, Kobayashi T, Wesolowski A, Norris DE, Ruczinski I, Moss WJ, Louis TA: A pre-processing pipeline to quantify, visualize, and reduce technical variation in protein microarray studies. Proteomics 22(3):e2100033, 2022.

Chen A, Kammers K, Larman HB, Scharpf RB, Ruczinski I: Detecting and quantifying antibody reactivity in PhIP-Seq data with BEER. Bioinformatics 38(19):4647-4649, 2022.

Chen A, Kammers K, Larman HB, Scharpf RB, Ruczinski I: Detecting antibody reactivities in Phage ImmunoPrecipitation Sequencing data. BMC Genomics 23(1):654, 2022.

Grant-McAuley W, Laeyendecker O, Monaco D, Chen A, Hudelson SE, Klock E, Brookmeyer R, ..., Ruczinski I, Kammers K, et al: Evaluation of multi-assay algorithms for cross-sectional HIV incidence estimation in settings with universal antiretroviral treatment. BMC Infect Dis 22(1):838, 2022.

Hu X, Qiao D, Kim W, Moll M, ..., Ruczinski I, et al: Polygenic transcriptome risk scores for COPD and lung function improve cross-ethnic portability of prediction in the NHLBI TOPMed program. Am J Hum Genet 109(5):857-870, 2022.

Kanchan K, Grinek S, Bahnson HT, Ruczinski I, Shankar G, Larson D, et al: HLA alleles and sustained peanut consumption promote IgG4 responses in subjects protected from peanut allergy. J Clin Invest 132(1):e152070, 2022.

Kanchan K, Shankar G, Huffaker MF, Bahnson HT, Chinthrajah RS, Sanda S, Manohar M, Ling H, Paschall JE, Toit GD, Ruczinski I, Togias A, Lack G, Nadeau KC, Jones SM, Nepom GT, Mathias RA: HLA-associated outcomes in peanut oral immunotherapy trials identify mechanistic and clinical determinants of therapeutic success. Front Immunol 13:941839, 2022.

Katz DH, Tahir UA, Bick AG, Pampana A, ..., National Heart, Lung, and Blood Institute TOPMed (Trans-Omics for Precision Medicine) Consortium (includes Ruczinski I): Whole genome sequence analysis of the plasma proteome in black adults provides novel insights into cardiovascular disease. Circulation 145(5):357-370, 2022.

Li Z, Li X, Zhou H, ..., NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium (includes Ruczinski I), et al: A framework for detecting noncoding rare-variant associations of large-scale whole-genome sequencing studies. Nat Methods 19(12):1599-1611, 2022.

Mason SE, Moreta-Martinez R, Labaki WW, ..., COPDGene Investigators (includes Ruczinski I): Longitudinal association between muscle loss and mortality in ever smokers. Chest 161(4):960-970, 2022.

Ngwa JS, Yanek LR, Kammers K, Kanchan K, Taub MA, Scharpf RB, Faraday N, Becker LC, Mathias RA, Ruczinski I: Secondary analyses for genome-wide association studies using expression quantitative trait loci. Genet Epidemiol 46(3-4):170-181, 2022.

Selvaraj MS, Li X, Li Z, ..., NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium (includes Ruczinski I), et al: Whole genome sequence analysis of blood lipid levels in >66,000 individuals. Nat Commun 13(1):5995, 2022.

Tahir UA, Katz DH, Avila-Pachecho J, ..., NHLBI Trans-Omics for Precision Medicine 1 Consortium (includes Ruczinski I), et al: Whole genome association study of the plasma metabolome identifies metabolites linked to cardiometabolic disease in black individuals. Nat Commun 13(1):4923, 2022.

Taub MA, Conomos MP, Keener R, Iyer KR ..., Ruczinski I, et al: Genetic determinants of telomere length from 109,122 ancestrally diverse whole-genome sequences in TOPMed. Cell Genom 2(1):100084, 2022.

Wainschtein P, Jain D, Zheng Z, TOPMed Anthropometry Working Group, NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium (includes Ruczinski I), et al: Assessing the contribution of rare variants to complex trait heritability from whole-genome sequence data. Nat Genet 54(3):263-273, 2022.

Bin L, Malley C, Taylor P, ..., Ruczinski I, et al: Whole genome sequencing identifies novel genetic mutations in patients with eczema herpeticum. Allergy 76(8):2510-2523, 2021.

Cade BE, Lee J, Sofer T, Wang H, Zhang M, Chen H, Gharib SA, ..., NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium (includes Ruczinski I), et al: Whole-genome association analyses of sleep-disordered breathing phenotypes in the NHLBI TOPMed program. Genome Med 13(1):136, 2021.

Chen A, Laeyendecker O, Eshleman SH, Monaco DR, Kammers K, Larman HB, Ruczinski I: A top scoring pairs classifier for recent HIV infections. Stat Med 40(11):2604-2612, 2021.

Daya M, Cox C, Acevedo N, Boorgula MP, Campbell M, ..., Ruczinski I, et al: Multiethnic genome-wide and HLA association study of total serum IgE level. J Allergy Clin Immunol 148(6):1589-1595, 2021.

Kammers K, Chen A, Monaco DR, Hudelson SE, Grant-McAuley W, Moore RD, Alter G, Deeks SG, Morrison CS, Eller LA, Blankson JN, Laeyendecker O, Ruczinski I, Eshleman SH, Larman HB: HIV antibody profiles in HIV controllers and persons with treatment-induced viral suppression. Front Immunol 12:740395, 2021.

Kammers K, Taub MA, Rodriguez B, Yanek LR, Ruczinski I, Martin J, Kanchan K, Battle A, Cheng L, Wang ZZ, Johnson AD, Leek JT, Faraday N, Becker LC, Mathias RA: Transcriptional profile of platelets and iPSC-derived megakaryocytes from whole-genome and RNA sequencing. Blood 137(7):959-968, 2021.

Kasela S, Ortega VE, Martorella M, ..., NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium (includes Ruczinski I), et al: Genetic and non-genetic factors affecting the expression of COVID-19-relevant genes in the large airway epithelium. Genome Med 13(1):66, 2021.

Keramati AR, Chen MH, Rodriguez BAT, ..., Ruczinski I, ..., Taub MA, et al: Genome sequencing unveils a regulatory landscape of platelet reactivity. Nat Commun 12(1):3626, 2021.

Luo Y, Kanai M, Choi W, ..., NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium (includes Ruczinski I), et al: A high-resolution HLA reference panel capturing global population diversity enables multi-ancestry fine-mapping in HIV host response. Nat Genet 53(10):1504-1516, 2021.

Morgenlander WR, Henson SN, Monaco DR, Chen A, Littlefield K, Bloch EM, Fujimura E, Ruczinski I, et al: Antibody responses to endemic coronaviruses modulate COVID-19 convalescent plasma functionality. J Clin Invest 131(7):e146927, 2021.

Natarajan P, Pampana A, Graham SE, ..., NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium (includes Ruczinski I), et al: Chromosome Xq23 is associated with lower atherogenic lipid concentrations and favorable cardiometabolic indices. Nat Commun 12(1):2182, 2021.

Ray D, Venkataraghavan S, Zhang W, Leslie EJ, Hetmanski JB, Weinberg SM, Murray JC, Marazita ML, Ruczinski I, Taub MA, Beaty TH: Pleiotropy method reveals genetic overlap between orofacial clefts at multiple novel loci from GWAS of multi-ethnic trios. PLoS Genet 17(7):e1009584, 2021.

Reiner AP, Raffield LM, Franceschini N, Auer PL, Lange EM, Nickerson DA, Zakai NA, Correa A, Olson N, National Heart, Lung, and Blood Institute Trans-Omics for Precision Medicine Consortium (includes Ruczinski I): Effect of sickle cell trait and APOL1 genotype on the association of soluble uPAR with kidney function measures in black Americans. Clin J Am Soc Nephrol 16(2):287-289, 2021.

Sofer T, Zheng X, Laurie CA, ..., NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium (includes Ruczinski I), et al: Variant-specific inflation factors for assessing population stratification at the phenotypic variance level. Nat Commun 12(1):3506, 2021.

Taliun D, Harris DN, Kessler MD, ..., Ruczinski I, ..., NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium, et al: Sequencing of 53,831 diverse genomes from the NHLBI TOPMed Program. Nature 590(7845):290-299, 2021.

Yang C, Hallmark B, Chai JC, O'Connor TD, Reynolds LM, Wood AC, Seeds M, Chen YI, Steffen LM, Tsai MY, Kaplan RC, Daviglus ML, Mandarino LJ, Fretts AM, Lemaitre RN, Coletta DK, Blomquist SA, Johnstone LM, Tontsch C, Qi Q, Ruczinski I, Rich SS, Mathias RA, Chilton FH, Manichaikul A: Impact of Amerind ancestry and FADS genetic variation on omega-3 deficiency and cardiometabolic traits in Hispanic populations. Commun Biol 4(1):918, 2021.

Zhang W, Venkataraghavan S, Hetmanski JB, Leslie EJ, Marazita ML, Feingold E, Weinberg SM, Ruczinski I, Taub MA, Scott AF, Ray D, Beaty TH: Detecting gene-environment interaction for maternal exposures using case-parent trios ascertained through a case with non-syndromic orofacial cleft. Front Cell Dev Biol 9:621018, 2021.

Bick AG, Weinstock JS, Nandakumar SK, ..., NHLBI Trans-Omics for Precision Medicine Consortium (includes Ruczinski I), et al: Inherited causes of clonal haematopoiesis in 97,691 whole genomes. Nature 586(7831):763-768, 2020.

Bishop MR, Diaz Perez KK, Sun M, Ho S, Chopra P, Mukhopadhyay N, Hetmanski JB, Taub MA, ..., Ruczinski I, et al: Genome-wide enrichment of de novo coding mutations in orofacial cleft trios. Am J Hum Genet 107(1):124-136, 2020.

Cristiano S, McKean D, Carey J, Bracci P, Brennan P, Chou M, Du M, Gallinger S, Goggins MG, Hassan MM, Hung RJ, Kurtz RC, Li D, Lu L, Neale R, Olson S, Petersen G, Rabe KG, Fu J, Risch H, Rosner GL, Ruczinski I, Klein AP, Scharpf RB: Bayesian copy number detection and association in large-scale studies. BMC Cancer 20(1):856, 2020.

Hecker J, Ruczinski I, Cho MH, Silverman EK, Coull B, Lange C: A flexible and nearly optimal sequential testing approach to randomized testing: QUICK-STOP. Genet Epidemiol 44(2):139-147, 2020.

Kanchan K, Iyer K, Yanek LR, Carcamo-Orive I, Taub MA, ..., Ruczinski I, et al: Genomic integrity of human induced pluripotent stem cells across nine studies in the NHLBI NextGen program. Stem Cell Res 46:101803, 2020.

Kessler MD, Loesch DP, Perry JA, ..., TOPMed Population Genetics Working Group (includes Ruczinski I), et al: De novo mutations across 1,465 diverse genomes reveal mutational insights and reductions in the Amish founder population. Proc Natl Acad Sci U S A 117(5):2560-2569, 2020.

Li X, Li Z, Zhou H, Gaynor SM, Liu Y, ..., NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium (includes Ruczinski I), et al: Dynamic incorporation of multiple in silico functional annotations empowers rare variant association analysis of large whole-genome sequencing studies at scale. Nat Genet 52(9):969-983, 2020.

Milne S, Li X, Hernandez Cordero AI, Yang CX, Cho MH, Beaty TH, Ruczinski I, Hansel NN, Bosse Y, Brandsma CA, Sin DD, Obeidat M: Protective effect of club cell secretory protein (CC-16) on COPD risk and progression: a Mendelian randomisation study. Thorax 75(11):934-943, 2020.

Sergeant S, Hallmark B, Mathias RA, Mustin TL, Ivester P, Bohannon ML, Ruczinski I, Johnstone L, Seeds MC, Chilton FH: Prospective clinical trial examining the impact of genetic variation in FADS1 on the metabolism of linoleic acid- and ɣ-linolenic acid-containing botanical oils. Am J Clin Nutr 111(5):1068-1078, 2020.

Strand M, Austin E, Moll M, ..., Ruczinski I, et al: A risk prediction model for mortality among smokers in the COPDGene study. Chronic Obstr Pulm Dis 7(4):346-361, 2020.

Vince N, Limou S, Daya M, ..., Ruczinski I, ..., Taub M, et al: Association of HLA-DRB1∗09:01 with tIgE levels among African-ancestry individuals with asthma. J Allergy Clin Immunol 146(1):147-155, 2020.

Zhao X, Qiao D, Yang C, Kasela S, ..., Ruczinski I, et al: