SELECTED RECENT ARTICLES BY:

Briha Ansari (go to top of document)

Leroux A, Crainiceanu C, Zeger S, Taub M, Ansari B, Wager TD, Bayman E, Coffey C, Langefeld C, McCarthy R, Tsodikov A, Brummet C, Clauw DJ, Edwards RR, Lindquist MA, A2CPS Consortium: Statistical modeling of acute and chronic pain patient-reported outcomes obtained from ecological momentary assessment. Pain 165(9):1955-1965, 2024.

Karen Bandeen-Roche (go to top of document)

Crepeau PK, Sutton W, Sahli Z, Fedorova T, Russell JO, Zeiger MA, Bandeen-Roche K, Walston JD, Morris-Wiseman LF, Mathur A: Prevalence and risk factors for dysphagia in older adults after thyroid and parathyroid surgery. Surgery 175(1):99-106, 2024.

Kitzman DW, Halter JB, Bandeen-Roche K: The Pepper Older Americans Independence Centers: an NIA-sponsored program for improving physical function among older persons. J Am Geriatr Soc 72(5):1586-1589, 2024.

Moon KA, Poulsen MN, Bandeen-Roche K, Hirsch AG, DeWalle J, Pollak J, Schwartz BS: Community profiles in northeastern and central Pennsylvania characterized by distinct social, natural, food, and physical activity environments and their relation to type 2 diabetes. Environ Epidemiol 8(5):e328, 2024.

Schumock G, Bandeen-Roche K, Chia CW, Kalyani RR, Ferrucci L, Varadhan R: Nonlinear modeling of oral glucose tolerance test response to evaluate associations with aging outcomes. PLoS One 19(5):e0302381, 2024.

Sesso J, Walston J, Bandeen-Roche K, Wu C, Bertoni AG, Shah S, Lima JAC, Ambale-Venkatesh B: Association of cardiovascular fibrosis, remodeling, and dysfunction with frailty, prefrailty, and functional performance: the Multi-Ethnic Study of Atherosclerosis. J Gerontol A Biol Sci Med Sci 79(8):glae142, 2024.

Szanton SL, Alexander KA, Kim B, Li Q, Gee GC, Bandeen-Roche KJ, Adkins-Jackson PB, Hladek MD, Samuel LJ, Haozous EA, Okoye SM, Crews DC, Thorpe RJ Jr: Life space and activity space measurement: making "room" for structural racism. Gerontologist 64(7):gnad160, 2024.

Vohra V, Simonsick EM, Kamath V, Bandeen-Roche K, Agrawal Y, Rowan NR: Physical function trajectories and mortality in older adults with multisensory impairment. JAMA Otolaryngol Head Neck Surg 150(3):217-225, 2024.

Abadir PM, Bandeen-Roche K, Bergeman C, Bennett D, Davis D, Kind A, LeBrasseur N, Stern Y, Varadhan R, Whitson HE: An overview of the resilience world: Proceedings of the American Geriatrics Society and National Institute on Aging State of Resilience Science Conference. J Am Geriatr Soc 71(8):2381-2392, 2023.

Assi S, Garcia Morales EE, Windham BG, Lin FR, Bandeen-Roche K, Shukla A, Palta P, Deal JA, Reed NS, Martinez-Amezcua P: Hearing loss and frailty among older adults: the Atherosclerosis Risk in Communities Study. J Am Med Dir Assoc 24(11):1683-1689, 2023.

Bandeen-Roche K, Tian J, Buta B, Walston J, Xue QL: Substitution of self-reported measures for objectively assessed grip strength and slow walk in the Physical Frailty Phenotype: ramifications for validity. BMC Geriatr 23(1):451, 2023.

Crane BM, Bandeen-Roche K, Carlson MC: Exploring the relationship between engagement in enriching early-life activities during adolescence and cognition in later-life: results from the Health and Retirement Study. Res Aging 45(2):198-209, 2023.

Goeddel LA, Murphy Z, Owodunni O, Esfandiary T, Campbell D, Shay J, Tang O, Bandeen-Roche K, Gearhart S, Brown CH 4th: Domains of frailty predict loss of independence in older adults after noncardiac surgery. Ann Surg 278(2):e226-e233, 2023.

Hirsch AG, Schwartz BS, Nordberg C, Tan BK, Schleimer RP, Kern RC, Peters AT, Bandeen-Roche K, Lehmann AE: Risk of new-onset and prevalent disease in chronic rhinosinusitis: A prospective cohort study. Int Forum Allergy Rhinol 13(9):1715-1725, 2023.

Hladek MD, Wilson DH, Shofner S, Gross AL, Buta B, Bandeen-Roche K, Schoenborn N: Resilient adaptation strategies: unveiling older adults' coping dynamics amidst the COVID-19 pandemic. J Gerontol Nurs 49(12):32-39, 2023.

Keita Fakeye MB, Samuel LJ, Drabo EF, Bandeen-Roche K, Wolff JL: Caregiving-related work productivity loss among employed family and other unpaid caregivers of older adults. Value Health 26(5):712-720, 2023.

Roth DL, Bentley JP, Mukaz DK, Haley WE, Walston JD, Bandeen-Roche K: Transitions to family caregiving and latent variables of systemic inflammation over time. Res Aging 45(2):173-184, 2023.

Schwartz BS, Pollak JS, Bandeen-Roche K, Hirsch AG, Lehmann AE, Kern RC, Tan BK, Kato A, Schleimer RP, Peters AT: Sinus inflammation and chronic rhinosinusitis are associated with a diagnosis of new onset asthma in the following year. Allergy 78(10):2659-2668, 2023.

Taylor JL, Clair CA, Gitlin LN, Atkins S, Bandeen-Roche K, Abshire Saylor M, Hladek MD, Riser TJ, Thorpe RJ Jr, Szanton SL: Acceptability and feasibility of a pain and depressive symptoms management intervention in middle-aged and older African American women. Innov Aging 7(10):igad096, 2023.

Thornton CP, Bandeen-Roche K, Dolinar M, Roberts Lavigne LC, George Lansey D, Jones R, Walston J, Varadhan R, Hladek M, Imus P: Clinical trial participation predicts improved survival in older adults receiving allogeneic blood and marrow transplant. BMC Geriatr 23(1):120, 2023.

Walston J, Varadhan R, Xue QL, Buta B, Sieber F, Oni J, Imus P, Crews DC, Artz A, Schrack J, Kalyani RR, Abadir P, Carlson M, Hladek M, McAdams-DeMarco M, Jones R, Johnson A, Shafi T, Newman AB, Bandeen-Roche K: A Study of Physical Resilience and Aging (SPRING): Conceptual framework, rationale, and study design. J Am Geriatr Soc 71(8):2393-2405, 2023.

Wanigatunga AA, Chiu V, Cai Y, Urbanek JK, Mitchell CM, Miller ER 3rd, Christenson RH, Rebuck H, Michos ED, Juraschek SP, Walston J, Xue QL, Bandeen-Roche K, Appel LJ, Schrack JA: Patterns of daily physical movement, chronic inflammation, and frailty incidence. Med Sci Sports Exerc 55(2):281-288, 2023.

Buta B, Zheng S, Langdon J, Adeosun B, Bandeen-Roche K, Walston J, Xue QL: Agreement between standard and self-reported assessments of physical frailty syndrome and its components in a registry of community-dwelling older adults. BMC Geriatr 22(1):705, 2022.

Clegg A, Bandeen-Roche K, Farrin A, Forster A, Gill TM, Gladman J, Kerse N, Lindley R, McManus RJ, Melis R, Mujica-Mota R, Raina P, Rockwood K, Teh R, van der Windt D, Witham M: New horizons in evidence-based care for older people: individual participant data meta-analysis. Age Ageing 51(4):afac090, 2022.

Freedman VA, Bandeen-Roche K, Cornman JC, Spillman BC, Kasper JD, Wolff JL: Incident care trajectories for older adults with and without dementia. J Gerontol B Psychol Sci Soc Sci 77(Supplement_1):S21-S30, 2022.

Gorski-Steiner I, Bandeen-Roche K, Volk HE, O'Dell S, Schwartz BS: The association of unconventional natural gas development with diagnosis and treatment of internalizing disorders among adolescents in Pennsylvania using electronic health records. Environ Res 212(Pt A):113167, 2022.

Gorski-Steiner I, O'Dell S, Bandeen-Roche K, Volk HE, Goes FS, Schwartz BS: Geographic disparities in new onset of internalizing disorders in Pennsylvania adolescents using electronic health records. Spat Spatiotemporal Epidemiol 41:100439, 2022.

Hirsch AG, Nordberg CM, Bandeen-Roche K, Pollak J, Poulsen MN, Moon KA, Schwartz BS: Urban-rural differences in health care utilization and COVID-19 outcomes in patients with type 2 diabetes. Prev Chronic Dis 19:E44, 2022.

Hladek M, Gill JM, Lai C, Bandeen-Roche K, Xue QL, Allen J, Leyden C, Kanefsky R, Szanton SL: High social coping self-efficacy associated with lower sweat interleukin-6 in older adults with chronic illness. J Appl Gerontol 41(2):581-589, 2022.

Hladek MD, Zhu J, Crews DC, McAdams-DeMarco MA, Buta B, Varadhan R, Shafi T, Walston JD, Bandeen-Roche K: Physical resilience phenotype trajectories in incident hemodialysis: characterization and mortality risk assessment. Kidney Int Rep 7(9):2006-2015, 2022.

Ijaz N, Buta B, Xue QL, Mohess DT, Bushan A, Tran H, Batchelor W, deFilippi CR, Walston JD, Bandeen-Roche K, Forman DE, Resar JR, O'Connor CM, Gerstenblith G, Damluji AA: Interventions for frailty among older adults with cardiovascular disease: JACC state-of-the-art review. J Am Coll Cardiol 79(5):482-503, 2022.

Ip EH, Chen SH, Rejeski WJ, Bandeen-Roche K, Hayden KM, Hugenschmidt CE, Pierce J, Miller ME, Speiser JL, Kritchevsky SB, Houston DK, Newton RL, Rapp SR, Kitzman DW: Gradient and acceleration of decline in physical and cognitive functions in older adults: a disparity analysis. J Gerontol A Biol Sci Med Sci 77(8):1603-1611, 2022.

LaFave SE, Bandeen-Roche K, Gee G, Thorpe RJ, Li Q, Crews D, Samuel L, Cooke A, Hladek M, Szanton SL: Quantifying older Black Americans' exposure to structural racial discrimination: how can we measure the water in which we swim? J Urban Health 99(5):794-802, 2022.

Laskow T, Zhu J, Buta B, Oni J, Sieber F, Bandeen-Roche K, Walston J, Franklin PD, Varadhan R: Risk factors for nonresilient outcomes in older adults after total knee replacement. J Gerontol A Biol Sci Med Sci 77(9):1915-1922, 2022.

LeCroy MN, Potter LN, Bandeen-Roche K, Bianco ME, Cappola AR, Carter EB, Dayan PS, Eckstrom E, Edwards DF, Farabi SS, Fisher SD, Giordano J, Hanson HA, Jenkins E, Juhn Y, Kaskel F, Stake CE, Reeds DN, Schleiss MR, Wafford QE, McColley SA: Barriers to and solutions for representative inclusion across the lifespan and in life course research: The need for structural competency highlighted by the COVID-19 pandemic. J Clin Transl Sci 7(1):e38, 2022.

Meeker MA, Schwartz BS, Bandeen-Roche K, Hirsch AG, De Silva SSA, McAlexander TP, Black NC, McClure LA: Assessing measurement invariance of a land use environment construct across levels of urbanicity. Geohealth 6(10):e2022GH000667, 2022.

Moored KD, Bandeen-Roche K, Snitz BE, DeKosky ST, Williamson JD, Fitzpatrick AL, Carlson MC: Risk of dementia differs across lifestyle engagement subgroups: a latent class and time-to-event analysis in community-dwelling older adults. J Gerontol B Psychol Sci Soc Sci 77(5):872-884, 2022.

Nichols E, Deal JA, Swenor BK, Abraham AG, Armstrong NM, Bandeen-Roche K, Carlson MC, Griswold M, Lin FR, Mosley TH, Ramulu PY, Reed NS, Sharrett AR, Gross AL: The effect of missing data and imputation on the detection of bias in cognitive testing using differential item functioning methods. BMC Med Res Methodol 22(1):81, 2022.

Nkimbeng M, Commodore-Mensah Y, Angel JL, Bandeen-Roche K, Thorpe RJ Jr, Han HR, Winch PJ, Szanton SL: Longer residence in the United States is associated with more physical function limitations in African immigrant older adults. J Appl Gerontol 41(2):411-420, 2022.

Palta P, Griswold M, Ranadive R, Bandeen-Roche K, Folsom AR, Petruski-Ivleva N, Burgard S, Kucharska-Newton A, Windham BG: Midlife cardiovascular health and robust versus frail late-life status: the Atherosclerosis Risk in Communities Study. J Gerontol A Biol Sci Med Sci 77(6):1222-1229, 2022.

Petrovsky Doan LN, Loizos M, O'Conor R, Prochaska M, Tsang M, Hopman-Droste R, Klinedinst TC, Mathur A, Bandeen-Roche K, van der Willik O, Kritchevsky SB: Key recommendations from the 2021 "inclusion of older adults in clinical research" workshop. J Clin Transl Sci 6(1):e55, 2022.

Schwartz BS, Kolak M, Pollak JS, Poulsen MN, Bandeen-Roche K, Moon KA, DeWalle J, Siegel KR, Mercado CI, Imperatore G, Hirsch AG: Associations of four indexes of social determinants of health and two community typologies with new onset type 2 diabetes across a diverse geography in Pennsylvania. PLoS One 17(9):e0274758, 2022.

Sezgin D, O'Donovan M, Woo J, Bandeen-Roche K, Liotta G, et al: Early identification of frailty: developing an international Delphi consensus on pre-frailty. Arch Gerontol Geriatr 99:104586, 2022.

Chan T, Wanigatunga AA, Terracciano A, Carlson MC, Bandeen-Roche K, Costa PT, Simonsick EM, Schrack JA: Traits and treadmills: Association between personality and perceived fatigability in well-functioning community-dwelling older adults. Psychol Aging 36(6):710-717, 2021.

Chu NM, Bandeen-Roche K, Xue QL, Carlson MC, Sharrett AR, Gross AL: Physical frailty phenotype criteria and their synergistic association on cognitive functioning. J Gerontol A Biol Sci Med Sci 76(9):1633-1642, 2021.

Chu NM, Xue QL, McAdams-DeMarco MA, Carlson MC, Bandeen-Roche K, Gross AL: Frailty-a risk factor of global and domain-specific cognitive decline among a nationally representative sample of community-dwelling older adult U.S. Medicare beneficiaries. Age Ageing 50(5):1569-1577, 2021.

Damluji AA, Chung SE, Xue QL, Hasan RK, Moscucci M, Forman DE, Bandeen-Roche K, Batchelor W, Walston JD, Resar JR, Gerstenblith G: Frailty and cardiovascular outcomes in the National Health and Aging Trends Study. Eur Heart J 42(37):3856-3865, 2021.

Damluji AA, Chung SE, Xue QL, Hasan RK, Walston JD, Forman DE, Bandeen-Roche K, Moscucci M, Batchelor W, Resar JR, Gerstenblith G: Physical frailty phenotype and the development of geriatric syndromes in older adults with coronary heart disease. Am J Med 134(5):662-671, 2021.

Darrow JA, Calabro A, Gannon S, Orusakwe A, Esquivel R, Traynham CJ, Rao A, Gulyani S, Khingelova K, Bandeen-Roche K, Albert M, Moghekar A: Effect of patient-specific preanalytic variables on CSF Aβ1-42 concentrations measured on an automated chemiluminescent platform. J Appl Lab Med 6(2):397-408, 2021.

Fried LP, Cohen AA, Xue QL, Walston J, Bandeen-Roche K, Varadhan R: The physical frailty syndrome as a transition from homeostatic symphony to cacophony. Nat Aging 1(1):36-46, 2021.

Garibaldi BT, Fiksel J, Muschelli J, Robinson ML, Rouhizadeh M, Perin J, Schumock G, Nagy P, Gray JH, Malapati H, Ghobadi-Krueger M, Niessen TM, Kim BS, Hill PM, Ahmed MS, Dobkin ED, Blanding R, Abele J, Woods B, Harkness K, Thiemann DR, Bowring MG, Shah AB, Wang MC, Bandeen-Roche K, Rosen A, Zeger SL, Gupta A: Patient trajectories among persons hospitalized for COVID-19 : a cohort study. Ann Intern Med 174(1):33-41, 2021.

Garibaldi BT, Wang K, Robinson ML, Zeger SL, Bandeen-Roche K, Wang MC, Alexander GC, Gupta A, Bollinger R, Xu Y: Comparison of time to clinical improvement with vs without remdesivir treatment in hospitalized patients with COVID-19. JAMA Netw Open 4(3):e213071, 2021.

Ghachem A, Fried LP, Legault V, Bandeen-Roche K, Presse N, Gaudreau P, Cohen AA: Evidence from two cohorts for the frailty syndrome as an emergent state of parallel dysregulation in multiple physiological systems. Biogerontology 22(1):63-79, 2021.

Griswold ME, Talluri R, Zhu X, Su D, Tingle J, Gottesman RF, Deal J, Rawlings AM, Mosley TH, Windham BG, Bandeen-Roche K: Reflection on modern methods: shared-parameter models for longitudinal studies with missing data. Int J Epidemiol 50(4):1384-1393, 2021.

Handing EP, Rapp SR, Chen SH, Rejeski WJ, Wiberg M, Bandeen-Roche K, Craft S, Kitzman D, Ip EH: Heterogeneity in association between cognitive function and gait speed among older adults: an integrative data analysis study. J Gerontol A Biol Sci Med Sci 76(4):710-715, 2021.

Hladek MD, Zhu J, Buta BJ, Szanton SL, Bandeen-Roche K, Walston JD, Xue QL: Self-efficacy proxy predicts frailty incidence over time in non-institutionalized older adults. J Am Geriatr Soc 69(12):3507-3518, 2021.

Huisingh-Scheetz M, Buta B, Bandeen-Roche K, Huang ES, Varadhan R, Walston J, Wroblewski K, Schumm LP, Waite LJ: 2015-2016 Normative Data for the 3-m usual walk, five repeated chair stands, and static balance components of the SPPB among U.S. older adults across two nationally representative data sets: NSHAP and NHATS. J Gerontol B Psychol Sci Soc Sci 76(Supplement_3):S299-S312, 2021.

Schwartz BS, Pollak J, Poulsen MN, Bandeen-Roche K, Moon K, DeWalle J, Siegel K, Mercado C, Imperatore G, Hirsch AG: Association of community types and features in a case-control analysis of new onset type 2 diabetes across a diverse geography in Pennsylvania. BMJ Open 11(1):e043528, 2021.

Scully EP, Schumock G, Fu M, Massaccesi G, Muschelli J, Betz J, Klein EY, West NE, Robinson M, Garibaldi BT, Bandeen-Roche K, Zeger S, Klein SL, Gupta A: Sex and gender differences in testing, hospital admission, clinical presentation, and drivers of severe outcomes from COVID-19. Open Forum Infect Dis 8(9):ofab448, 2021.

Sedhom R, Kuo PL, Gupta A, Smith TJ, Chino F, Carducci MA, Bandeen-Roche K: Changes in the place of death for older adults with cancer: Reason to celebrate or a risk for unintended disparities? J Geriatr Oncol 12(3):361-367, 2021.

Sutton W, Genberg B, Prescott JD, Segev DL, Zeiger MA, Bandeen-Roche K, Mathur A: Understanding surgical decision-making in older adults with differentiated thyroid cancer: a discrete choice experiment. Surgery 169(1):14-21, 2021.

Usher T, Buta B, Thorpe RJ, Huang J, Samuel LJ, Kasper JD, Bandeen-Roche K: Dissecting the racial/ethnic disparity in frailty in a nationally representative cohort study with respect to health, income, and measurement. J Gerontol A Biol Sci Med Sci 76(1):69-76, 2021.

Wongvibulsin S, Garibaldi BT, Antar AAR, Wen J, Wang MC, Gupta A, Bollinger R, Xu Y, Wang K, Betz JF, Muschelli J, Bandeen-Roche K, Zeger SL, Robinson ML: Development of Severe COVID-19 Adaptive Risk Predictor (SCARP), a calculator to predict severe disease or death in hospitalized patients with COVID-19. Ann Intern Med 174(6):777-785, 2021.

Xue QL, Bandeen-Roche K, Tian J, Kasper JD, Fried LP: Progression of physical frailty and the risk of all-cause mortality: is there a point of no return? J Am Geriatr Soc 69(4):908-915, 2021.

Bandeen-Roche K, Gross AL, Varadhan R, Buta B, Carlson MC, Huisingh-Scheetz M, Mcadams-Demarco M, Piggott DA, Brown TT, Hasan RK, Kalyani RR, Seplaki CL, Walston JD, Xue QL: Principles and issues for physical frailty measurement and its clinical application. J Gerontol A Biol Sci Med Sci 75(6):1107-1112, 2020.

Damluji AA, Rodriguez G, Noel T, Davis L, Dahya V, Tehrani B, Epps K, Sherwood M, Sarin E, Walston J, Bandeen-Roche K, Resar JR, Brown TT, Gerstenblith G, O'Connor CM, Batchelor W: Sarcopenia and health-related quality of life in older adults after transcatheter aortic valve replacement. Am Heart J 224:171-181, 2020.

Deal JA, Power MC, Palta P, Alonso A, Schneider ALC, Perryman K, Bandeen-Roche K, Sharrett AR: Relationship of cigarette smoking and time of quitting with incident dementia and cognitive decline. J Am Geriatr Soc 68(2):337-345, 2020.

Ge ML, Carlson MC, Bandeen-Roche K, Chu NM, Tian J, Kasper JD, Xue QL: U.S. national profile of older adults with cognitive impairment alone, physical frailty alone, and both. J Am Geriatr Soc 68(12):2822-2830, 2020.

Gross AL, Carlson MC, Chu NM, McAdams-DeMarco MA, Mungas D, Simonsick EM, Varadhan R, Xue QL, Walston J, Bandeen-Roche K: Derivation of a measure of physiological multisystem dysregulation: Results from WHAS and Health ABC. Mech Ageing Dev 188:111258, 2020.

Guralnik J, Bandeen-Roche K, Bhasin SAR, Eremenco S, Landi F, Muscedere J, Perera S, Reginster JY, Woodhouse L, Vellas B: Clinically meaningful change for physical performance: perspectives of the ICFSR Task Force. J Frailty Aging 9(1):9-13, 2020.

Hirsch AG, Nordberg C, Bandeen-Roche K, Tan BK, Schleimer RP, Kern RC, Sundaresan A, Pinto JM, Kennedy TL, Greene JS, Kuiper JR, Schwartz BS: Radiologic sinus inflammation and symptoms of chronic rhinosinusitis in a population-based sample. Allergy 75(4):911-920, 2020.

Hladek MD, Gill J, Bandeen-Roche K, Walston J, Allen J, Hinkle JL, Lorig K, Szanton SL: High coping self-efficacy associated with lower odds of pre-frailty/frailty in older adults with chronic disease. Aging Ment Health 24(12):1956-1962, 2020.

Ip EH, Chen SH, Bandeen-Roche K, Speiser JL, Cai L, Houston DK: Longitudinal partially ordered data analysis for preclinical sarcopenia. Stat Med 39(24):3313-3328, 2020.

Jock BWI, Bandeen Roche K, Caldas SV, Redmond L, Fleischhacker S, Gittelsohn J: Latent class analysis offers insight into the complex food environments of Native American communities: findings from the randomly selected OPREVENT2 trial baseline sample. Int J Environ Res Public Health 17(4): E1237, 2020.

Lee MJ, Varadaraj V, Tian J, Bandeen-Roche K, Swenor BK: The association between frailty and uncorrected refractive error in older adults. Ophthalmic Epidemiol 27(3):219-225, 2020.

Kuiper JR, Hirsch AG, Bandeen-Roche K, Sundaresan AS, Tan BK, Kern RC, Schleimer RP, Schwartz BS: A new approach to categorization of radiologic inflammation in chronic rhinosinusitis. PLoS One 15(6):e0235432, 2020.

McAlexander TP, Bandeen-Roche K, Buckley JP, Pollak J, Michos ED, McEvoy JW, Schwartz BS: Unconventional natural gas development and hospitalization for heart failure in Pennsylvania. J Am Coll Cardiol 76(24):2862-2874, 2020.

Piggott DA, Bandeen-Roche K, Mehta SH, Brown TT, Yang H, Walston JD, Leng SX, Kirk GD: Frailty transitions, inflammation, and mortality among persons aging with HIV infection and injection drug use. AIDS 34(8):1217-1225, 2020.

Swenor BK, Lee MJ, Tian J, Varadaraj V, Bandeen-Roche K: Visual impairment and frailty: examining an understudied relationship. J Gerontol A Biol Sci Med Sci 75(3):596-602, 2020.

Van Domelen DR, Bandeen-Roche K: A note on proposed estimation procedures for claims-based frailty indexes. Am J Epidemiol 189(5):369-371, 2020.

Xue QL, Tian J, Walston JD, Chaves PHM, Newman AB, Bandeen-Roche K: Discrepancy in frailty identification: move beyond predictive validity. J Gerontol A Biol Sci Med Sci 75(2):387-393, 2020.

Chu NM, Bandeen-Roche K, Tian J, Kasper JD, Gross AL, Carlson MC, Xue QL: Hierarchical development of frailty and cognitive impairment: clues into etiological pathways. J Gerontol A Biol Sci Med Sci 74(11):1761-1770, 2019.

Chu NM, Gross AL, Shaffer AA, Haugen CE, Norman SP, Xue QL, Sharrett AR, Carlson MC, Bandeen-Roche K, Segev DL, McAdams-DeMarco MA: Frailty and changes in cognitive function after kidney transplantation. J Am Soc Nephrol 30(2):336-345, 2019.

Clark DV, Banura P, Bandeen-Roche K, Liles WC, Kain KC, Scheld WM, Moss WJ, Jacob ST: Biomarkers of endothelial activation/dysfunction distinguish sub-groups of Ugandan patients with sepsis and differing mortality risks. JCI Insight 4(10):e127623, 2019.

Damluji AA, Bandeen-Roche K, Berkower C, Boyd CM, Al-Damluji MS, Cohen MG, Forman DE, Chaudhary R, Gerstenblith G, Walston JD, Resar JR, Moscucci M: Percutaneous coronary intervention in older patients with ST-segment elevation myocardial infarction and cardiogenic shock. J Am Coll Cardiol 73(15):1890-1900, 2019.

Damluji AA, Huang J, Bandeen-Roche K, Forman DE, Gerstenblith G, Moscucci M, Resar JR, Varadhan R, Walston JD, Segal JB: Frailty among older adults with acute myocardial infarction and outcomes from percutaneous coronary interventions. J Am Heart Assoc 8(17):e013686, 2019.

Deal JA, Sharrett AR, Albert M, Bandeen-Roche K, Burgard S, Thomas SD, Gottesman RF, Knopman D, Mosley T, Klein B, Klein R: Retinal signs and risk of incident dementia in the Atherosclerosis Risk in Communities study. Alzheimers Dement 15(3):477-486, 2019.

Jackson H, Engelman M, Bandeen-Roche K: Robust respondents and lost limitations: the implications of nonrandom missingness for the estimation of health trajectories. J Aging Health 31(4):685-708, 2019.

Kim J, Bandeen-Roche K: Parametric estimation of association in bivariate failure-time data subject to competing risks: sensitivity to underlying assumptions. Lifetime Data Anal 25(2):259-279, 2019.

Kuiper JR, Hirsch AG, Bandeen-Roche K, Sundaresan AS, Tan BK, Kern RC, Schleimer RP, Schwartz BS: Workplace indirect cost impacts of nasal and sinus symptoms and related conditions. J Occup Environ Med 61(8):e333-e339, 2019.

Varadaraj V, Lee MJ, Tian J, Ramulu PY, Bandeen-Roche K, Swenor BK: Near vision impairment and frailty: evidence of an association. Am J Ophthalmol 208:234-241, 2019.

Varadhan R, Russ DW, Gabr RE, Huang J, Kalyani RR, Xue QL, Cappola AR, Bandeen-Roche K, Fried LP: Relationship of physical frailty to phosphocreatine recovery in muscle after mild exercise stress in the oldest-old women. J Frailty Aging 8(4):162-168, 2019.

Walker KA, Sharrett AR, Wu A, Schneider ALC, Albert M, Lutsey PL, Bandeen-Roche K, Coresh J, Gross AL, Windham BG, Knopman DS, Power MC, Rawlings AM, Mosley TH, Gottesman RF: Association of midlife to late-life blood pressure patterns with incident dementia. JAMA 322(6):535-545, 2019.

Walston J, Bandeen-Roche K, Buta B, Bergman H, Gill TM, Morley JE, Fried LP, Robinson TN, Afilalo J, Newman AB, Lopez-Otin C, De Cabo R, Theou O, Studenski S, Cohen HJ, Ferrucci L: Moving frailty toward clinical practice: NIA Intramural Frailty Science Symposium summary. J Am Geriatr Soc 67(8):1559-1564, 2019.

Joshua Betz (go to top of document)

Buchholz A, Deme P, Betz JF, Brandt J, Haughey N, Cervenka MC: A randomized feasibility trial of the modified Atkins diet in older adults with mild cognitive impairment due to Alzheimer's disease. Front Endocrinol 15:1182519, 2024.

Cai Y, Martinez-Amezcua P, Betz JF, et al: Hearing impairment and physical activity and physical functioning in older ddults: baseline results from the ACHIEVE Trial. J Gerontol A Biol Sci Med Sci 79(7):glae117, 2024.

Major Extremity Trauma Research Consortium (METRC) (includes Betz J): Cognitive-behavioral-based physical therapy for improving recovery after a traumatic lower-extremity injury: the results of a randomized controlled trial. J Bone Joint Surg Am 106(14):1300-1308, 2024.

Sanchez VA, Arnold ML, Betz JF, Reed NS, Faucette S, Anderson E, et al: Description of the baseline audiologic characteristics of the participants enrolled in the Aging and Cognitive Health Evaluation in Elders Study. Am J Audiol 33(1):1-17, 2024.

Deal JA, Jiang K, Betz JF, Clemens GD, Zhu J, Reed NS, Garibaldi BT, Swenor BK: COVID-19 clinical outcomes by patient disability status: A retrospective cohort study. Disabil Health J 16(2):101441, 2023.

Garcia Morales EE, Croll PH, Palta P, Goedegebure A, Reed NS, Betz JF, Lin FR, Deal JA: Association of carotid atherosclerosis with hearing loss: a cross-sectional analysis of the Atherosclerosis Risk in Communities Study. JAMA Otolaryngol Head Neck Surg 149(3):223-230, 2023.

Robinson ML, Morris CP, Betz JF, Zhang Y, Bollinger R, Wang N, Thiemann DR, Fall A, Eldesouki RE, Norton JM, Gaston DC, Forman M, Luo CH, Zeger SL, Gupta A, Garibaldi BT, Mostafa HH: Impact of severe acute respiratory syndrome coronavirus 2 variants on inpatient clinical outcome. Clin Infect Dis 76(9):1539-1549, 2023.

Andersen KM, Joseph CS, Mehta HB, Streiff MB, Betz JF, Bollinger RC Jr, Fisher AM, Gupta A, LeMaistre CF, Robinson ML, Xu Y, Ng DK, Alexander GC, Garibaldi BT: Thromboprophylaxis in people hospitalized with COVID-19: Assessing intermediate or standard doses in a retrospective cohort study. Res Pract Thromb Haemost 6(5):e12753, 2022.

Archer KR, Davidson CA, Alkhoury D, Vanston SW, Moore TL, Deluca A, Betz JF, Thompson RE, Obremskey WT, Slobogean GP, Melton DH, Wilken JM, Karunakar MA, Rivera JC, Mir HR, McKinley TO, Frey KP, Castillo RC, Wegener ST, METRC: Cognitive-Behavioral-Based Physical Therapy for Improving Recovery After Traumatic Orthopaedic Lower Extremity Injury (CBPT-Trauma). J Orthop Trauma 36(Suppl 1):S1-S7, 2022.

Collaco JM, Raraigh KS, Betz J, Aksit MA, Blau N, Brown J, Dietz HC, MacCarrick G, Nogee LM, Sheridan MB, Vernon HJ, Beaty TH, Louis TA, Cutting GR: Accurate assignment of disease liability to genetic variants using only population data. Genet Med 24(1):87-99, 2022.

Garcia Morales EE, Ting J, Gross AL, Betz JF, Jiang K, Du S, Power MC, Reed NS, Sharrett AR, Lin FR, Deal JA: Association of cigarette smoking patterns over 30 years with audiometric hearing impairment and speech-in-noise perception: the Atherosclerosis Risk in Communities Study. JAMA Otolaryngol Head Neck Surg 148(3):243-251, 2022.

Garibaldi BT, Wang K, Robinson ML, Betz J, Caleb Alexander G, Andersen KM, Joseph CS, Mehta HB, Korwek K, Sands KE, Fisher AM, Bollinger RC, Xu Y: Real-world effectiveness of remdesivir in adults hospitalized with coronavirus disease 2019 (COVID-19): a retrospective, multicenter comparative effectiveness study. Clin Infect Dis 75(1):e516-e524, 2022.

Han H, Lin Z, Soldan A, Pettigrew C, Betz JF, Oishi K, Li Y, Liu P, Albert M, Lu H: Longitudinal changes in global cerebral blood flow in cognitively normal older adults: a phase-contrast MRI study. J Magn Reson Imaging 56(5):1538-1545, 2022.

Kim AS, Betz JF, Albert M, Deal JA, Faucette SP, Oh ES, Reed NS, Lin FR, Nieman CL: Accuracy of self- and proxy-rated hearing among older adults with and without cognitive impairment. J Am Geriatr Soc 70(2):490-500, 2022.

Kim AS, Betz JF, Reed NS, Ward BK, Nieman CL: Prevalence of tympanic membrane perforations among adolescents, adults, and older adults in the United States. Otolaryngol Head Neck Surg 167(2):356-358, 2022.

Manabe YC, Betz J, Jackson O, Asoala V, et al: Clinical evaluation of the BioFire Global Fever Panel for the identification of malaria, leptospirosis, chikungunya, and dengue from whole blood: a prospective, multicentre, cross-sectional diagnostic accuracy study. Lancet Infect Dis 22(9):1356-1364, 2022.

Nieman CL, Betz J, Garcia Morales EE, Suen JJ, Trumbo J, Marrone N, Han HR, Szanton SL, Lin FR: Effect of a community health worker-delivered personal sound amplification device on self-perceived communication function in older adults with hearing loss: a randomized clinical trial. JAMA 328(23):2324-2333, 2022.

Smith JR, Betz JF, Garcia EE, Jiang K, Swenor BK, Reed NS, Deal JA: Self-reported dual sensory impairment and subjective cognitive complaints among older adults in the 2019 National Health Interview Survey. Am J Audiol 31(4):1202-1209, 2022.

Standeven LR, Osborne LM, Betz JF, Yenokyan G, Voegtline K, Hantsoo L, Payne JL: Allopregnanolone and depression and anxiety symptoms across the peripartum: an exploratory study. Arch Womens Ment Health 25(2):521-526, 2022.

Ting J, Jiang K, Du S, Betz J, Reed N, Power MC, Gottesman R, Sharrett AR, Griswold ME, Walker KA, Miller ER, Lin FR, Deal JA: Longitudinal blood pressure patterns from mid- to late life and late-life hearing loss in the Atherosclerosis Risk in Communities Study. J Gerontol A Biol Sci Med Sci 77(3):640-646, 2022.

Wright WF, Betz JF, Auwaerter PG: Prospective studies comparing structured vs nonstructured diagnostic protocol evaluations among patients with fever of unknown origin: a systematic review and meta-analysis. JAMA Netw Open 5(6):e2215000, 2022.

Yi JS, Garcia Morales EE, Betz JF, Deal JA, Dean LT, Du S, Goman AM, Griswold ME, Palta P, Rebok GW, Reed NS, Thorpe RJ, Lin FR, Nieman CL: Individual life-course socioeconomic position and hearing aid use in the Atherosclerosis Risk in Communities Study. J Gerontol A Biol Sci Med Sci 77(3):645-653, 2022.

Askenase MH, Goods BA, Beatty HE, Steinschneider AF, ..., Thompson RE, ..., ICHseq Investigators MISTIE III Investigators (includes Betz J): Longitudinal transcriptomics define the stages of myeloid activation in the living human brain after intracerebral hemorrhage. Sci Immunol 6(56):eabd6279, 2021.

Bowring MG, Wang Z, Xu Y, Betz J, Muschelli J, Garibaldi BT, Zeger SL: Outcome-stratified analysis of biomarker trajectories for patients infected with severe acute respiratory syndrome coronavirus 2. Am J Epidemiol 190(10):2094-2106, 2021.

Deal JA, Betz J, Lin FR, Reed NS: Interpreting results from epidemiologic studies. Semin Hear 42(1):3-9, 2021.

Goman AM, Gao T, Betz J, Reed NS, Deal JA, Lin FR, ACHIEVE-P Study Group: Association of hearing loss with physical, social, and mental activity engagement. Semin Hear 42(1):59-65, 2021.

Kim AS, Betz JF, Nieman CL, Hoyer MR, Applebaum J, Lin FR, Goman AM: Long-term impact of hearing aid provision or cochlear implantation on hearing handicap. Laryngoscope 131(5):1122-1126, 2021.

Scully EP, Schumock G, Fu M, Massaccesi G, Muschelli J, Betz J, Klein EY, West NE, Robinson M, Garibaldi BT, Bandeen-Roche K, Zeger S, Klein SL, Gupta A: Sex and gender differences in testing, hospital admission, clinical presentation, and drivers of severe outcomes from COVID-19. Open Forum Infect Dis 8(9):ofab448, 2021.

Steingrimsson JA, Betz J, Qian T, Rosenblum M: Optimized adaptive enrichment designs for three-arm trials: learning which subpopulations benefit from different treatments. Biostatistics 22(2):283-297, 2021.

Suen JJ, Betz J, Reed NS, Deal JA, Lin FR, Goman AM: Prevalence of asymmetric hearing among adults in the United States. Otol Neurotol 42(2):e111-e113, 2021.

Wongvibulsin S, Garibaldi BT, Antar AAR, Wen J, Wang MC, Gupta A, Bollinger R, Xu Y, Wang K, Betz JF, Muschelli J, Bandeen-Roche K, Zeger SL, Robinson ML: Development of Severe COVID-19 Adaptive Risk Predictor (SCARP), a calculator to predict severe disease or death in hospitalized patients with COVID-19. Ann Intern Med 174(6):777-785, 2021.

Wu HC, Thallmayer T, Deal JA, Betz JF, Reed NS, Lin FR: Prevalence trends in hearing aid use among US adults aged 50 to 69 years with hearing loss-2011 to 2016 vs 1999 to 2004. JAMA Otolaryngol Head Neck Surg 147(9):831-832, 2021.

Armstrong NM, Deal JA, Betz J, Kritchevsky S, Pratt S, Harris T, Barry LC, Simonsick EM, Lin FR: Associations of hearing loss and depressive symptoms with incident disability in older adults: Health, Aging, and Body Composition Study. J Gerontol A Biol Sci Med Sci 75(3):531-536, 2020.

Kim AS, Betz JF, Goman AM, Poe DS, Reed NS, Ward BK, Nieman CL: Prevalence and population estimates of obstructive eustachian tube dysfunction in US adolescents. JAMA Otolaryngol Head Neck Surg 146(8):763-765, 2020.

Kim SJ, Reed N, Betz JF, Abraham A, Lee MJ, Sharrett AR, Lin FR, Deal JA: Association between microvascular retinal signs and age-related hearing loss in the Atherosclerosis Risk in Communities Neurocognitive Study (ARIC-NCS). JAMA Otolaryngol Head Neck Surg 146(2):152-159, 2020.

Shah M, Paradis S, Betz J, Beylis N, Bharadwaj R, Caceres T, Gotuzzo E, Joloba M, Mave V, Nakiyingi L, Nicol MP, Pradhan N, King B, Armstrong D, Knecht D, Maus CE, Cooper CK, Dorman SE, Manabe YC: Multicenter study of the accuracy of the BD MAX multidrug-resistant tuberculosis assay for detection of Mycobacterium tuberculosis complex and mutations associated with resistance to rifampin and isoniazid. Clin Infect Dis 71(5):1161-1167, 2020.

Afify A, Betz JF, Riabinina O, Lahondere C, Potter CJ: Commonly used insect repellents hide human odors from anopheles mosquitoes. Curr Biol 29(21):3669-3680, 2019.

Applebaum J, Hoyer M, Betz J, Lin FR, Goman AM: Long-term subjective loneliness in adults after hearing loss treatment. Int J Audiol 58(8):464-467, 2019.

Bailey CR, Arun A, Towsley M, Choi WK, Betz JF, MacKenzie S, Areda MA, Duvvuri M, Mitchell S, Weiss CR: MVP(TM) micro vascular plug systems for the treatment of pulmonary arteriovenous malformations. Cardiovasc Intervent Radiol 42(3):389-395, 2019.

DeLuca A, Betz J, Bollinger R, Ray S, Manabe Y: Users beware! Biological variation in complete blood counts over short time intervals. BMJ Evid Based Med 24(6):207-208, 2019.

Hanley DF, Thompson RE, Rosenblum M, Yenokyan G, ..., Betz JF, Sugar EA, et al: Efficacy and safety of minimally invasive surgery with thrombolysis in intracerebral haemorrhage evacuation (MISTIE III): a randomised, controlled, open-label, blinded endpoint phase 3 trial. Lancet 393(10175):1021-1032, 2019.

Osborne LM, Betz JF, Yenokyan G, Standeven LR, Payne JL: The role of allopregnanolone in pregnancy in predicting postpartum anxiety symptoms. Front Psychol 10:1033, 2019.

Reed NS, Betz JF, Kucharska-Newton AM, Lin FR, Deal JA: Hearing loss and satisfaction with healthcare: an unexplored relationship. J Am Geriatr Soc 67(3):624-626, 2019.

Reed NS, Huddle MG, Betz J, Power MC, Pankow JS, Gottesman R, Richey Sharrett A, Mosley TH, Lin FR, Deal JA: Association of midlife hypertension with late-life hearing loss. Otolaryngol Head Neck Surg 161(6):996-1003, 2019.

Brian Caffo (go to top of document)

Bergquist T, Loomba J, Pfaff E, ... Long COVID Computational Challenge Participants (includes Caffo B), et al: Crowd-sourced machine learning prediction of long COVID using data from the National COVID Cohort Collaborative. EBioMedicine 108:105333, 2024.

Levine MA, Chen H, Wodka EL, Deronda AC, Caffo BS, Ewen JB: A multi-trait multi-method examination of psychometric instrument performance in autism spectrum disorder. Assessment 31(4):892-898, 2024.

Steinway SN, Tang B, Telezing J, Ashok A, Kamal A, Yu CY, Jagtap N, Buxbaum JL, Elmunzer J, Wani SB, Khashab MA, Caffo BS, Akshintala VS: A machine learning-based choledocholithiasis prediction tool to improve ERCP decision making: a proof-of-concept study. Endoscopy 56(3):165-171, 2024.

Tang B, Pramanik S, Zhao Y, Caffo B, Datta A: Direct Bayesian linear regression for distribution-valued covariates. Electron J Stat 18(2): 3327-3375, 2024.

Zhao Y, Caffo BS, Luo X: Longitudinal regression of covariance matrix outcomes. Biostatistics 25(2):385-401, 2024.

Aston SA, Caffo BS, Bhasin H, Moran TH, Tamashiro KL: Timing matters: The contribution of running during different periods of the light/dark cycle to susceptibility to activity-based anorexia in rats. Physiol Behav 271:114349, 2023.

Breining BL, Faria AV, Tippett DC, Stockbridge MD, Meier EL, Caffo B, Hermann O, Friedman R, Meyer A, Tsapkini K, Hillis AE: Association of regional atrophy with naming decline in primary progressive aphasia. Neurology 100(6):e582-e594, 2023.

Bu X, Gao Y, Liang K, Bao W, Chen Y, Guo L, Gong Q, Lu H, Caffo B, Mori S, Huang X: Multivariate associations between behavioural dimensions and white matter across children and adolescents with and without attention-deficit/hyperactivity disorder. J Child Psychol Psychiatry 64(2):244-253, 2023.

Crasta JE, Nebel MB, Svingos A, Tucker RN, Chen HW, Busch T, Caffo BS, Stephens J, Suskauer SJ: Rethinking recovery in adolescent concussions: network-level functional connectivity alterations associated with motor deficits. Hum Brain Mapp 44(8):3271-3282, 2023.

Gujar SK, Manzoor K, Wongsripuemtet J, Wang G, Ryan D, Agarwal S, Lindquist M, Caffo B, Pillai JJ, Sair HI: Identification of the language network from resting-state fMRI in patients with brain tumors: how accurate are experts? AJNR Am J Neuroradiol 44(3):274-282, 2023.

McCoy RG, Faust L, Heien HC, Patel S, Caffo B, Ngufor C: Longitudinal trajectories of glycemic control among U.S. adults with newly diagnosed diabetes. Diabetes Res Clin Pract 205:110989, 2023.

Mejia AF, Bolin D, Yue YR, Wang J, Caffo BS, Nebel MB: Template independent component analysis with spatial priors for accurate subject-level brain network estimation and inference. J Comput Graph Stat 32(2):413-433, 2023.

Morales Pantoja IE, Smirnova L, Muotri AR, Wahlin KJ,..., Caffo B, Szalay AS, Han F, et al: First Organoid Intelligence (OI) workshop to form an OI community. Front Artif Intell 6:1116870, 2023.

Nath T, Caffo B, Wager T, Lindquist MA: A machine learning based approach towards high-dimensional mediation analysis. Neuroimage 268:119843, 2023.

Sluka KA, Wager TD, ..., Caffo B, ..., Lindquist M, et al: Predicting chronic postsurgical pain: current evidence and a novel program to develop predictive biomarker signatures. Pain 164(9):1912-1926, 2023.

Smith BB, Zhao Y, Lindquist MA, Caffo B: Regression models for partially localized fMRI connectivity analyses. Front Neuroimaging 2:1178359, 2023.

Tang B, Levine M, Adamek JH, Wodka EL, Caffo BS, Ewen JB: Evaluating causal psychological models: a study of language theories of autism using a large sample. Front Psychol 14:1060525, 2023.

Tang B, Zhao Y, Venkataraman A, Tsapkini K, Lindquist MA, Pekar J, Caffo B: Differences in functional connectivity distribution after transcranial direct-current stimulation: a connectivity density point of view. Hum Brain Mapping 44(1):170-185, 2023.

Wang Z, Ficek BN, Webster KT, Herrmann O, Frangakis CE, Desmond JE, Onyike CU, Caffo B, Hillis AE, Tsapkini K: Specificity in generalization effects of transcranial direct current stimulation over the left inferior frontal gyrus in primary progressive aphasia. Neuromodulation 26(4):850-860, 2023.

Zhao Y, Wang B, Liu CF, Faria AV, Miller MI, Caffo BS, Luo X: Identifying brain hierarchical structures associated with Alzheimer's disease using a regularized regression method with tree predictors. Biometrics 79(3):2333-2345, 2023.

Berardi G, Frey-Law L, ..., Lindquist M, Caffo BS, Crainiceanu C, Zeger S, ..., Taub M, et al: Multi-site observational study to assess biomarkers for susceptibility or resilience to chronic pain: The Acute to Chronic Pain Signatures (A2CPS) study protocol. Front Med 9:849214, 2022.

Breining BL, Faria AV, Caffo B, Meier EL, Sheppard SM, Sebastian R, Tippett DC, Hillis AE: Neural regions underlying object and action naming: Complementary evidence from acute stroke and primary progressive aphasia. Aphasiology 36(6):732-760, 2022.

Caffo BS, D'Asaro FA, Garcez A, Raffinetti E: Editorial: Explainable artificial intelligence models and methods in finance and healthcare. Front Artif Intell 5:970246, 2022.

Chen H, Caffo B, Stein-O'Brien G, Liu J, Langmead B, Colantuoni C, Xiao L: Two-stage linked component analysis for joint decomposition of multiple biologically related data sets. Biostatistics 23(4):1200-1217, 2022.

Huang Q, Tang B, Romero JC, Yang Y, Elsayed SK, Pahapale G, Lee TJ, Morales Pantoja IE, Han F, Berlinicke C, Xiang T, Solazzo M, Hartung T, Qin Z, Caffo BS, Smirnova L, Gracias DH: Shell microelectrode arrays (MEAs) for brain organoids. Sci Adv 8(33):eabq5031, 2022.

Langenecker SA, Westlund Schreiner M, Thomas LR, Bessette KL, DelDonno SR, Jenkins LM, Easter RE, Stange JP, Pocius SL, Dillahunt A, Love TM, Phan KL, Koppelmans V, Paulus M, Lindquist MA, Caffo B, Mickey BJ, Welsh RC: Using network parcels and resting-state networks to estimate correlates of mood disorder and related research domain criteria constructs of reward responsiveness and inhibitory control. Biol Psychiatry Cogn Neurosci Neuroimaging 7(1):76-84, 2022.

Sheppard SM, Meier EL, Kim KT, Breining BL, Keator LM, Tang B, Caffo BS, Hillis AE: Neural correlates of syntactic comprehension: a longitudinal study. Brain Lang 225:105068, 2022.

Wan B, Caffo B, Vedula SS: A unified framework on generalizability of clinical prediction models. Front Artif Intell 5:872720, 2022.

Wang B, Caffo BS, Luo X, Liu CF, Faria AV, Miller MI, Zhao Y, for the Alzheimer's Disease Neuroimaging Initative: Regularized regression on compositional trees with application to MRI analysis. Applied Statistics 71(3): 541-561, 2022.

Zhao Y, Caffo BS, Ewen JB: B-value and empirical equivalence bound: a new procedure of hypothesis testing. Stat Med 41(6):964-980, 2022.

Zhao Y, Nebel MB, Caffo BS, Mostofsky SH, Rosch KS: Beyond massive univariate tests: Covariance regression reveals complex patterns of functional connectivity related to attention-deficit/hyperactivity disorder, age, sex, and response control. Biol Psychiatry Glob Open Sci 2(1):8-16, 2022.

Al Ammary F, Yu S, Muzaale AD, Segev DL, Liyanage L, Crews DC, Brennan DC, El-Meanawy A, Alqahtani S, Atta MG, Levan ML, Caffo BS, Welling PA, Massie AB: Long-term kidney function and survival in recipients of allografts from living kidney donors with hypertension: a national cohort study. Transpl Int 34(8):1530-1541, 2021.

Al-Khouja A, Shieh E, Fuchs EJ, Marzinke MA, Bakshi RP, Hummert P, Ham AS, Buckheit KW, Breakey J, Weld ED, Chen H, Caffo BS, Buckheit RW, Hendrix CW: Examining the safety, pharmacokinetics, and pharmacodynamics of a rectally administered IQP-0528 gel for HIV pre-exposure prophylaxis: a first-in-human study. AIDS Res Hum Retroviruses 37(6):444-452, 2021.

Beheshtian E, Jalilianhasanpour R, Modir Shanechi A, Sethi V, Wang G, Lindquist MA, Caffo BS, Agarwal S, Pillai JJ, Gujar SK, Sair HI: Identification of the somatomotor network from language task-based fMRI compared with resting-state fMRI in patients with brain lesions. Radiology 301(1):178-184, 2021.

Bridgeford EW, Wang S, Wang Z, Xu T, Craddock C, Dey J, Kiar G, Gray-Roncal W, Colantuoni C, Douville C, Noble S, Priebe CE, Caffo B, Milham M, Zuo XN, Consortium for Reliability and Reproducibility, Vogelstein JT: Eliminating accidental deviations to minimize generalization error and maximize replicability: Applications in connectomics and genomics. PLoS Comput Biol 17(9):e1009279, 2021.

Choe AS, Tang B, Smith KR, Honari H, Lindquist MA, Caffo BS, Pekar JJ: Phase-locking of resting-state brain networks with the gastric basal electrical rhythm. PLoS One 16(1):e0244756, 2021.

Crasta JE, Raja AE, Caffo BS, Hluchan CM, Suskauer SJ: The effect of age and competition level on subtle motor performance in adolescents medically cleared postconcussion: preliminary findings. Am J Phys Med Rehabil 100(6):563-569, 2021.

Faria AV, Zhao Y, Ye C, Hsu J, Yang K, Cifuentes E, Wang L, Mori S, Miller M, Caffo B, Sawa A: Multimodal MRI assessment for first episode psychosis: A major change in the thalamus and an efficient stratification of a subgroup. Hum Brain Mapp 42(4):1034-1053, 2021.

Gill RE, Tang B, Smegal L, Adamek JH, McAuliffe D, Lakshmanan BM, Srivastava S, Quain AM, Sebold AJ, Lin DDM, Kossoff EH, Caffo B, Comi AM, Ewen JB: Quantitative EEG improves prediction of Sturge-Weber syndrome in infants with port-wine birthmark. Clin Neurophysiol 132(10):2440-2446, 2021.

Koenecke A, Powell M, Xiong R, Shen Z, Fischer N, Huq S, Khalafallah AM, Trevisan M, Sparen P, Carrero JJ, Nishimura A, Caffo B, Stuart EA, Bai R, Staedtke V, Thomas DL, Papadopoulos N, Kinzler KW, Vogelstein B, Zhou S, Bettegowda C, Konig MF, Mensh BD, Vogelstein JT, Athey S: Alpha-1 adrenergic receptor antagonists to prevent hyperinflammation and death from lower respiratory tract infection. Elife 10:e61700, 2021.

Powell M, Koenecke A, Byrd JB, Nishimura A, Konig MF, Xiong R, Mahmood S, Mucaj V, Bettegowda C, Rose L, Tamang S, Sacarny A, Caffo B, Athey S, Stuart EA, Vogelstein JT: Ten rules for conducting retrospective pharmacoepidemiological analyses: example COVID-19 study. Front Pharmacol 12:700776, 2021.

Shafer AT, Beason-Held L, An Y, Williams OA, Huo Y, Landman BA, Caffo BS, Resnick SM: Default mode network connectivity and cognition in the aging brain: the effects of age, sex, and APOE genotype. Neurobiol Aging 104:10-23, 2021.

Wang B, Luo X, Zhao Y, Caffo B: Semiparametric partial common principal component analysis for covariance matrices. Biometrics 77(4):1175-1186, 2021.

Zhao Y, Caffo B, Luo X: Principal regression for high dimensional covariance matrices. Electron J Stat 15(2): 4192-4235, 2021.

Zhao Y, Caffo BS, Wang B, Li CR, Luo X: A whole-brain modeling approach to identify individual and group variations in functional connectivity. Brain Behav 11(1):e01942, 2021.

Zhao Y, Ficek B, Webster K, Frangakis C, Caffo B, Hillis AE, Faria A, Tsapkini K: White matter integrity predicts electrical stimulation (tDCS) and language therapy effects in primary progressive aphasia. Neurorehabil Neural Repair 35(1):44-57, 2021.

Zhao Y, Li L, Caffo BS: Multimodal neuroimaging data integration and pathway analysis. Biometrics 77(3):879-889, 2021.

Zhao Y, Wang B, Mostofsky SH, Caffo BS, Luo X: Covariate Assisted Principal regression for covariance matrix outcomes. Biostatistics 22(3):629-645, 2021.

Bae S, Massie AB, Caffo BS, Jackson KR, Segev DL: Machine learning to predict transplant outcomes: helpful or hype? A national cohort study. Transpl Int 33(11):1472-1480, 2020.

de Aguiar V, Zhao Y, Faria A, Ficek B, Webster KT, Wendt H, Wang Z, Hillis AE, Onyike CU, Frangakis C, Caffo B, Tsapkini K: Brain volumes as predictors of tDCS effects in primary progressive aphasia. Brain Lang 200:104707, 2020.

Gherman A, Muschelli J, Caffo B, Crainiceanu C: Rxnat: An open-source R package for XNAT-based repositories. Front Neuroinform 14:572068, 2020.

Jalilianhasanpour R, Chen H, Caffo B, Johnson P, Beheshtian E, Yousem DM: Are women disadvantaged in academic radiology? Acad Radiol 27(12):1760-1766, 2020.

McAuliffe D, Zhao Y, Pillai AS, Ament K, Adamek J, Caffo BS, Mostofsky SH, Ewen JB: Learning of skilled movements via imitation in ASD. Autism Res 13(5):777-784, 2020.

Mejia AF, Nebel MB, Wang Y, Caffo BS, Guo Y: Template independent component analysis: targeted and reliable estimation of subject-level brain networks using big data population priors. JASA 115(531):1151-1177, 2020.

Wu D, Chang L, Ernst TM, Caffo BS, Oishi K: Developmental score of the infant brain: characterizing diffusion MRI in term- and preterm-born infants. Brain Struct Funct 225(8):2431-2445, 2020.

Zhao Y, Lindquist MA, Caffo BS: Sparse principal component based high-dimensional mediation analysis. Comput Stat Data Anal 142: 106835, 2020.

Charkhchi P, Wang B, Caffo B, Yousem DM: Bias in neuroradiology peer review: Impact of a "ding" on "dinging" others. AJNR Am J Neuroradiol 40(1):19-24, 2019.

de Aguiar V, Zhao Y, Ficek BN, Webster K, Rofes A, Wendt H, Frangakis C, Caffo B, Hillis AE, Rapp B, Tsapkini K: Cognitive and language performance predicts effects of spelling intervention and tDCS in Primary Progressive Aphasia. Cortex 124:66-84, 2019.

Lindquist MA, Geuter S, Wager TD, Caffo BS: Modular preprocessing pipelines can reintroduce artifacts into fMRI data. Hum Brain Mapp 40(8):2358-2376, 2019.

Liu CF, Padhy S, Ramachandran S, Wang VX, Efimov A, Bernal A, Shi L, Vaillant M, Ratnanather JT, Faria AV, Caffo B, Albert M, Miller MI, BIOCARD Research Team, Alzheimer's Disease Neuroimaging Initiative: Using deep Siamese neural networks for detection of brain asymmetries associated with Alzheimer's Disease and Mild Cognitive Impairment. Magn Reson Imaging 64:190-199, 2019.

Muschelli J, Gherman A, Fortin JP, Avants B, Whitcher B, Clayden JD, Caffo BS, Crainiceanu CM: Neuroconductor: an R platform for medical imaging analysis. Biostatistics 20(2):218-239, 2019.

Ngufor C, Houten HV, Caffo BS, Shah ND, McCoy RG: Mixed effect machine learning: a framework for predicting longitudinal change in hemoglobin A1c. J Biomed Inform 89:56-67, 2019.

Shappell H, Caffo BS, Pekar JJ, Lindquist MA: Improved state change estimation in dynamic functional connectivity using hidden semi-Markov models. Neuroimage 191:243-257, 2019.

Ye C, Albert M, Brown T, Bilgel M, Hsu J, Ma T, Caffo B, Miller MI, Mori S, Oishi K: Extended multimodal whole-brain anatomical covariance analysis: detection of disrupted correlation networks related to amyloid deposition. Heliyon 5(7):e02074, 2019.

Nilanjan Chatterjee (go to top of document)

Balasubramanian JB, Choudhury PP, Mukhopadhyay S, Ahearn T, Chatterjee N, Garcia-Closas M, Almeida JS: Wasm-iCARE: a portable and privacy-preserving web module to build, validate, and apply absolute risk models. JAMIA Open 7(2):ooae055, 2024.

Bunyavanich S, Becker PM, Altman MC, Lasky-Su J, Ober C, Zengler K, Berdyshev E, Bonneau R, Chatila T, Chatterjee N, et al: Analytical challenges in omics research on asthma and allergy: A National Institute of Allergy and Infectious Diseases workshop. J Allergy Clin Immunol 153(4):954-968, 2024.

Guo X, Chatterjee N, Dutta D: Subset-based method for cross-tissue transcriptome-wide association studies improves power and interpretability. HGG Adv 5(2):100283, 2024.

Hou K, Gogarten S, Kim J, Hua X, ..., Polygenic Risk Methods in Diverse Populations (PRIMED) Consortium Methods Working Group (includes Chatterjee N), et al: Admix-kit: an integrated toolkit and pipeline for genetic analyses of admixed populations. Bioinformatics 40(4):btae148, 2024.

Jin J, Zhan J, Zhang J, Zhao R, O'Connell J, Jiang Y, 23andMe Research Team, Buyske S, Gignoux C, Haiman C, Kenny EE, Kooperberg C, North K, Koelsch BL, Wojcik G, Zhang H, Chatterjee N: MUSSEL: Enhanced Bayesian polygenic risk prediction leveraging information across multiple ancestry groups. Cell Genom 4(4):100539, 2024.

Kachuri L, Chatterjee N, Hirbo J, Schaid DJ, Martin I, Kullo IJ, Kenny EE, Pasaniuc B, et al: Principles and methods for transferring polygenic risk scores across global populations. Nat Rev Genet 25(1):8-25, 2024.

Qi G, Chhetri SB, Ray D, Dutta D, Battle A, Bhattacharjee S, Chatterjee N: Genome-wide large-scale multi-trait analysis characterizes global patterns of pleiotropy and unique trait-specific variants. Nat Commun 15(1):6985, 2024.

Ray D, Loomis SJ, Venkataraghavan S, Zhang J, Tin A, Yu B, Chatterjee N, Selvin E, Duggal P: Characterizing common and rare variations in nontraditional glycemic biomarkers using multivariate approaches on multiancestry ARIC Study. Diabetes 73(9):1537-1550, 2024.

Wang Z, Shi W, Carroll RJ, Chatterjee N: Joint modeling of gene-environment correlations and interactions using polygenic risk scores in case-control studies. Am J Epidemiol kwae081, 2024.

Zhang J, Zhan J, Jin J, Ma C, Zhao R, O'Connell J, Jiang Y, 23andMe Research Team, Koelsch BL, Zhang H, Chatterjee N: An ensemble penalized regression method for multi-ancestry polygenic risk prediction. Nat Commun 15(1):3238, 2024.

Blechter B, Chien LH, Chen TY, Chang IS, Choudhury PP, ..., Chatterjee N, et al: Polygenic risk score, environmental tobacco smoke, and risk of lung adenocarcinoma in never-smoking women in Taiwan. JAMA Netw Open 6(11):e2339254, 2023.

Chatterjee N, Dun Y: From hazard rate to age-at-onset distribution: mind the gap. Cancer Epidemiol Biomarkers Prev 32(11):1477-1478, 2023.

Du S, Chen J, Kim H, Walker ME, Lichtenstein AH, Chatterjee N, Ganz P, Yu B, Vasan RS, Coresh J, Rebholz CM: Plasma protein biomarkers of healthy dietary patterns: results from the Atherosclerosis Risk in Communities Study and the Framingham Heart Study. J Nutr 153(1):34-46, 2023.

Duchen D, Vergara C, Thio CL, Kundu P, Chatterjee N, Thomas DL, Wojcik GL, Duggal P: Pathogen exposure misclassification can bias association signals in GWAS of infectious diseases when using population-based common control subjects. Am J Hum Genet 110(2):336-348, 2023.

Jiang Z, Zhang H, Ahearn TU, Garcia-Closas M, Chatterjee N, Zhu H, Zhan X, Zhao N: The sequence kernel association test for multicategorical outcomes. Genet Epidemiol 47(6):432-449, 2023.

Kim ES, Scharpf RB, Garcia-Closas M, Visvanathan K, Velculescu VE, Chatterjee N: Potential utility of risk stratification for multicancer screening with liquid biopsy tests. NPJ Precis Oncol 7(1):39, 2023.

Kim H, Appel LJ, Lichtenstein AH, Wong KE, Chatterjee N, Rhee EP, Rebholz CM: Metabolomic profiles associated with blood pressure reduction in response to the DASH and DASH-Sodium dietary interventions. Hypertension 80(7):1494-1506, 2023.

Kim H, Lichtenstein AH, Ganz P, Du S, Tang O, Yu B, Chatterjee N, Appel LJ, Coresh J, Rebholz CM: Identification of protein biomarkers of the Dietary Approaches to Stop Hypertension diet in randomized feeding studies and validation in an observational study. J Am Heart Assoc 12(7):e028821, 2023.

Koutros S, Kiemeney LA, Pal Choudhury P, ..., Chatterjee N, et al: Genome-wide association study of bladder cancer reveals new biological and translational insights. Eur Urol 84(1):127-137, 2023.

Kundu P, Chatterjee N: Logistic regression analysis of two-phase studies using generalized method of moments. Biometrics 79(1):241-252, 2023.

Liu T, Joshu CE, Lu J, Prizment A, Chatterjee N, Coresh J, Wu L, Platz EA: External validation of genetically predicted protein biomarkers for pancreatic cancer risk using aptamer-based plasma levels: A prospective analysis in the Atherosclerosis Risk in Communities Study. Int J Cancer 153(6):1201-1216, 2023.

Namkung H, Yukitake H, Fukudome D, Lee BJ, Tian M, Ursini G, Saito A, Lam S, Kannan S, Srivastava R, Niwa M, Sharma K, Zandi P, Jaaro-Peled H, Ishizuka K, Chatterjee N, Huganir RL, Sawa A: The miR-124-AMPAR pathway connects polygenic risks with behavioral changes shared between schizophrenia and bipolar disorder. Neuron 111(2):220-235, 2023.

Schlosser P, Zhang J, Liu H, Surapaneni AL, Rhee EP, Arking DE, Yu B, Boerwinkle E, Welling PA, Chatterjee N, Susztak K, Coresh J, Grams ME: Transcriptome- and proteome-wide association studies nominate determinants of kidney function and damage. Genome Biol 24(1):150, 2023.

Shi J, Shiraishi K, Choi J, ..., Chatterjee N, et al: Genome-wide association study of lung adenocarcinoma in East Asia and comparison with a European population. Nat Commun 14(1):3043, 2023.

Steinbrenner I, Yu Z, Jin J, Schultheiss UT, Kotsis F, Grams ME, Coresh J, Wuttke M, GCKD Investigators, Kronenberg F, Eckardt KU, Chatterjee N, Sekula P, Kottgen A: A polygenic score for reduced kidney function and adverse outcomes in a cohort with chronic kidney disease. Kidney Int 103(2):421-424, 2023.

Zhang H, Zhan J, Jin J, Zhang J, Lu W, Zhao R, Ahearn TU, Yu Z, O'Connell J, Jiang Y, Chen T, Okuhara D, 23andMe Research Team, Garcia-Closas M, Lin X, Koelsch BL, Chatterjee N: A new method for multiancestry polygenic prediction improves performance across diverse populations. Nat Genet 55(10):1757-1768, 2023.

Ahearn TU, Choudhury PP, ..., Chatterjee N, et al: Breast cancer risk in women from Ghana carrying rare germline pathogenic mutations. Cancer Epidemiol Biomarkers Prev 31(8):1593-1601, 2022.

Ahearn TU, Zhang H, ..., Chatterjee N: Common variants in breast cancer risk loci predispose to distinct tumor subtypes. Breast Cancer Res 24(1):2, 2022.

Berndt SI, Vijai J, Benavente Y, ..., Chatterjee N, et al: Distinct germline genetic susceptibility profiles identified for common non-Hodgkin lymphoma subtypes. Leukemia 36(12):2835-2844, 2022.

Dutta D, He Y, Saha A, Arvanitis M, Battle A, Chatterjee N: Aggregative trans-eQTL analysis detects trait-specific target gene sets in whole blood. Nat Commun 13(1):4323, 2022.

Hurson AN, Pal Choudhury P, Gao C, Husing A, Eriksson M, Shi M, Jones ME, Evans DGR, Milne RL, Gaudet MM, Vachon CM, Chasman DI, Easton DF, Schmidt MK, Kraft P, Garcia-Closas M, Chatterjee N, B-CAST Risk Modelling Group: Prospective evaluation of a breast-cancer risk model integrating classical risk factors and polygenic risk in 15 cohorts from six countries. Int J Epidemiol 50(6):1897-1911, 2022.

Jung AY, Ahearn TU, Behrens S, ..., Chatterjee N, et al: Distinct reproductive risk profiles for intrinsic-like breast cancer subtypes: pooled analysis of population-based studies. J Natl Cancer Inst 114(12):1706-1719, 2022.

Kullo IJ, Lewis CM, Inouye M, Martin AR, Ripatti S, Chatterjee N: Polygenic scores in biomedical research. Nat Rev Genet 23(9):524-532, 2022.

Mhatre S, Lacey B, Sherliker P, Chatterjee N, Rajaraman P, Goel M, Patkar S, Ostwal V, Patil P, Shrikhande SV, Chitkara G, Badwe R, Lewington S, Dikshit R: Reproductive factors and gall-bladder cancer, and the effect of common genetic variants on these associations: a case-control study in India. Int J Epidemiol 51(3):789-798, 2022.

Qi G, Dutta D, Leroux A, Ray D, Muschelli J, Crainiceanu C, Chatterjee N: Genome-wide association studies of 27 accelerometry-derived physical activity measurements identified novel loci and genetic mechanisms. Genet Epidemiol 46(2):122-138, 2022.

Ray D, Munoz A, Zhang M, Li X, Chatterjee N, Jacobson LP, Lau B: Meta-analysis under imbalance in measurement of confounders in cohort studies using only summary-level data. BMC Med Res Methodol 22(1):143, 2022.

Rhee EP, Surapaneni A, Zheng Z, Zhou L, Dutta D, Arking DE, Zhang J, Duong T, Chatterjee N, et al: Trans-ethnic genome-wide association study of blood metabolites in the Chronic Renal Insufficiency Cohort (CRIC) study. Kidney Int 101(4):814-823, 2022.

Shabani M, Dutta D, Ambale-Venkatesh B, Post WS, Taylor KD, Rich SS, Wu CO, Pereira NL, Shah SJ, Chatterjee N, Rotter JI, Arking DE, Lima JAC: Rare genetic variants associated with myocardial fibrosis: Multi-Ethnic Study of Atherosclerosis. Front Cardiovasc Med 9:804788, 2022.

Surapaneni A, Schlosser P, Zhou L, Liu C, Chatterjee N, Arking DE, Dutta D, Coresh J, Rhee EP, Grams ME: Identification of 969 protein quantitative trait loci in an African American population with kidney disease attributed to hypertension. Kidney Int 102(5):1167-1177, 2022.

Wu HH, Hua X, Shi J, Chatterjee N, Zhu B: Utilizing patient information to identify subtype heterogeneity of cancer driver genes. Stat Methods Med Res 31(3):510-519, 2022.

Zhang J, Dutta D, Kottgen A, Tin A, Schlosser P, Grams ME, Harvey B, CKDGen Consortium, Yu B, Boerwinkle E, Coresh J, Chatterjee N: Plasma proteome analyses in individuals of European and African ancestry identify cis-pQTLs and models for proteome-wide association studies. Nat Genet 54(5):593-602, 2022.

Arvanitis M, Qi G, Bhatt DL, Post WS, Chatterjee N, Battle A, McEvoy JW: Linear and nonlinear Mendelian randomization analyses of the association between diastolic blood pressure and cardiovascular events: the J-curve revisited. Circulation 143(9):895-906, 2021.

Ballreich J, Jin J, Kundu P, Chatterjee N: Provider and patient characteristics of medicare beneficiaries who are high-risk for COVID-19 mortality. J Gen Intern Med 36(7):2189-2190, 2021.

Blechter B, Wong JYY, ..., Chatterjee N, et al: Sub-multiplicative interaction between polygenic risk score and household coal use in relation to lung adenocarcinoma among never-smoking women in Asia. Environ Int 147:105975, 2021.

Chen TH, Chatterjee N, Landi MT, Shi J: A penalized regression framework for building polygenic risk models based on summary statistics from genome-wide association studies and incorporating external information. JASA 116(533):133-143, 2021.

de Rochemonteix M, Napolioni V, Sanyal N, Belloy ME, Caporaso NE, Landi MT, Greicius MD, Chatterjee N, Han SS: Likelihood ratio test for gene-environment interaction based on the trend effect of genotype under an additive risk model using the gene-environment independence assumption. Am J Epidemiol 190(1):129-141, 2021.

Grams ME, Surapaneni A, Chen J, Zhou L, Yu Z, Dutta D, Welling PA, Chatterjee N, Zhang J, Arking DE, Chen TK, Rebholz CM, Yu B, Schlosser P, Rhee EP, Ballantyne CM, Boerwinkle E, Lutsey PL, Mosley T, Feldman HI, Dubin RF, Ganz P, Lee H, Zheng Z, Coresh J: Proteins associated with risk of kidney function decline in the general population. J Am Soc Nephrol 32(9):2291-2302, 2021.

Hung RJ, Warkentin MT, Brhane Y, Chatterjee N, et al: Assessing lung cancer absolute risk trajectory based on a polygenic risk model. Cancer Res 81(6):1607-1615, 2021.

Jin J, Agarwala N, Kundu P, Harvey B, Zhang Y, Wallace E, Chatterjee N: Individual and community-level risk for COVID-19 mortality in the United States. Nat Med 27(2):264-269, 2021.

Kapoor PM, Mavaddat N, Choudhury PP, ..., Chatterjee N, et al: Combined associations of a polygenic risk score and classical risk factors with breast cancer risk. J Natl Cancer Inst 113(3):329-337, 2021.

Kim W, Moll M, Qiao D, Hobbs BD, Shrine N, Sakornsakolpat P, Tobin MD, Dudbridge F, Wain LV, Ladd-Acosta C, Chatterjee N, Silverman EK, Cho MH, Beaty TH: Interaction of cigarette smoking and polygenic risk score on reduced lung function. JAMA Netw Open 4(12):e2139525, 2021.

Leroux A, Xu S, Kundu P, Muschelli J, Smirnova E, Chatterjee N, Crainiceanu C: Quantifying the predictive performance of objectively measured physical activity on mortality in the UK Biobank. J Gerontol A Biol Sci Med Sci 76(8):1486-1494, 2021.

Mhatre S, Richmond RC, Chatterjee N, Rajaraman P, Wang Z, Zhang H, Badwe R, Goel M, Patkar S, Shrikhande SV, Patil PS, Davey Smith G, Relton CL, Dikshit RP: The role of gallstones in gallbladder cancer in India: a Mendelian randomization study. Cancer Epidemiol Biomarkers Prev 30(2):396-403, 2021.

Mocci E, Kundu P, ..., Chatterjee N, et al: Smoking modifies pancreatic cancer risk loci on 2q21.3. Cancer Res 81(11):3134-3143, 2021.

Pal Choudhury P, Brook MN, Hurson AN, Lee A, Mulder CV, Coulson P, Schoemaker MJ, Jones ME, Swerdlow AJ, Chatterjee N, Antoniou AC, Garcia-Closas M: Comparative validation of the BOADICEA and Tyrer-Cuzick breast cancer risk models incorporating classical risk factors and polygenic risk in a population-based prospective cohort of women of European ancestry. Breast Cancer Res 23(1):22, 2021.

Qi G, Chatterjee N: A comprehensive evaluation of methods for Mendelian randomization using realistic simulations and an analysis of 38 biomarkers for risk of type 2 diabetes. Int J Epidemiol 50(4):1335-1349, 2021.

Sanyal N, Napolioni V, de Rochemonteix M, Belloy ME, Caporaso NE, Landi MT, Greicius MD, Chatterjee N, Han SS: A robust test for additive gene-environment interaction under the trend effect of genotype using an empirical Bayes-type shrinkage estimator. Am J Epidemiol 190(9):1948-1960, 2021.

Wand H, Lambert SA, Tamburro C, Iacocca MA, ..., Chatterjee N, et al: Improving reporting standards for polygenic scores in risk prediction studies. Nature 591(7849):211-219, 2021.

Yu Z, Jin J, Tin A, Kottgen A, Yu B, Chen J, Surapaneni A, Zhou L, Ballantyne CM, Hoogeveen RC, Arking DE, Chatterjee N, Grams ME, Coresh J: Polygenic risk scores for kidney function and their associations with circulating proteome, and incident kidney diseases. J Am Soc Nephrol 32(12):3161-3173, 2021.

Zhang H, Zhao N, Ahearn TU, Wheeler W, Garcia-Closas M, Chatterjee N: A mixed-model approach for powerful testing of genetic associations with cancer risk incorporating tumor characteristics. Biostatistics 22(4):772-788, 2021.

Arvanitis M, Tampakakis E, Zhang Y, Wang W, Auton A, 23andMe Research Team, Dutta D, Glavaris S, Keramati A, Chatterjee N, Chi NC, Ren B, Post WS, Battle A: Genome-wide association and multi-omic analyses reveal ACTN2 as a gene linked to heart failure. Nat Commun 11(1):1122, 2020.

Bolton KL, Ptashkin RN, Gao T, Braunstein L, Devlin SM, ..., Chatterjee N, et al: Cancer therapy shapes the fitness landscape of clonal hematopoiesis. Nat Genet 52(11):1219-1226, 2020.

Chien LH, Chen CH, Chen TY, ..., Katki HA, Chatterjee N, et al: Predicting lung cancer occurrence in never-smoking females in Asia: TNSF-SQ, a prediction model. Cancer Epidemiol Biomarkers Prev 29(2):452-459, 2020.

ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Consortium (includes Chatterjee N): Pan-cancer analysis of whole genomes. Nature 578(7793):82-93, 2020.

Koutros S, Kogevinas M, ..., Chatterjee N, et al: Diesel exhaust and bladder cancer risk by pathologic stage and grade subtypes. Environ Int 135:105346, 2020.

McGrath BP, Kundu P, Daya N, Coresh J, Selvin E, McEvoy JW, Chatterjee N: Isolated diastolic hypertension in the UK Biobank: Comparison of ACC/AHA and ESC/NICE guideline definitions. Hypertension 76(3):699-706, 2020.

Meisner A, Kundu P, Zhang YD, Lan LV, Kim S, Ghandwani D, Pal Choudhury P, Berndt SI, Freedman ND, Garcia-Closas M, Chatterjee N: Combined utility of 25 disease and risk factor polygenic risk scores for stratifying risk of all-cause mortality. Am J Hum Genet 107(3):418-431, 2020.

Mhatre S, Rajaraman P, Chatterjee N, Bray F, Goel M, Patkar S, Ostwal V, Patil P, Manjrekar A, Shrikhande SV, Badwe R, Dikshit R: Mustard oil consumption, cooking method, diet and gallbladder cancer risk in high- and low-risk regions of India. Int J Cancer 147(6):1621-1628, 2020.

Moore A, Kane E, Wang Z, Panagiotou OA, ..., Chatterjee N, et al: Genetically determined height and risk of non-Hodgkin lymphoma. Front Oncol 9:1539, 2020.

Pal Choudhury P, Chaturvedi AK, Chatterjee N: Evaluating discrimination of a lung cancer risk prediction model using partial risk-score in a two-phase study. Cancer Epidemiol Biomarkers Prev 29(6):1196-1203, 2020.

Pal Choudhury P, Maas P, Wilcox A, Wheeler W, Brook M, Check D, Garcia-Closas M, Chatterjee N: iCARE: An R package to build, validate and apply absolute risk models. PLoS One 15(2):e0228198, 2020.

Pal Choudhury P, Wilcox AN, Brook MN, Zhang Y, Ahearn T, Orr N, Coulson P, Schoemaker MJ, Jones ME, Gail MH, Swerdlow AJ, Chatterjee N, Garcia-Closas M: Comparative validation of breast cancer risk prediction models and projections for future risk stratification. J Natl Cancer Inst 112(3):278-285, 2020.

Ray D, Chatterjee N: Effect of non-normality and low count variants on cross-phenotype association tests in GWAS. Eur J Hum Genet 28(3):300-312, 2020.

Ray D, Chatterjee N: A powerful method for pleiotropic analysis under composite null hypothesis identifies novel shared loci between type 2 diabetes and prostate cancer. PLoS Genet 16(12):e1009218, 2020.

Tang H, Jiang L, Stolzenberg-Solomon RZ, Arslan AA, ..., Chatterjee N, et al: Genome-wide gene-diabetes and gene-obesity interaction scan in 8,255 cases and 11,900 controls from PanScan and PanC4 consortia. Cancer Epidemiol Biomarkers Prev 29(9):1784-1791, 2020.

Wong JYY, Zhang H, Hsiung CA, ..., Chatterjee N, et al: Tuberculosis infection and lung adenocarcinoma: Mendelian randomization and pathway analysis of genome-wide association study data from never-smoking Asian women. Genomics 112(2):1223-1232, 2020.

Yu Z, Coresh J, Qi G, Grams M, Boerwinkle E, Snieder H, Teumer A, Pattaro C, Kottgen A, Chatterjee N, Tin A: A bidirectional Mendelian randomization study supports causal effects of kidney function on blood pressure. Kidney Int 98(3):708-716, 2020.

Zhang H, Ahearn TU, Lecarpentier J, ..., Chatterjee N, et al: Genome-wide association study identifies 32 novel breast cancer susceptibility loci from overall and subtype-specific analyses. Nat Genet 52(6):572-581, 2020.

Zhang YD, Hurson AN, Zhang H, Choudhury PP, ..., Chatterjee N, et al: Assessment of polygenic architecture and risk prediction based on common variants across fourteen cancers. Nat Commun 11(1):3353, 2020.

Zhong J, Jermusyk A, Wu L, Hoskins JW, Collins I, ..., Chatterjee N, et al: A transcriptome-wide association study identifies novel candidate susceptibility genes for pancreatic cancer. J Natl Cancer Inst 112(10):1003-1012, 2020.

Campbell PT, Ambrosone CB, Nishihara R, Aerts HJWL, Bondy M, Chatterjee N, et al: Proceedings of the fourth international molecular pathological epidemiology (MPE) meeting. Cancer Causes Control 30(8):799-811, 2019.

Garcia-Closas M, Chatterjee N: Assessment of breast cancer risk: which tools to use? Lancet Oncol 20(4):463-464, 2019.

Heller R, Meir A, Chatterjee N: Post‐selection estimation and testing following aggregate association tests. JRSS-B 81(3): 547-573, 2019.

Kundu P, Tang R, Chatterjee N: Generalized meta-analysis for multiple regression models across studies with disparate covariate information. Biometrika 106(3):567-585, 2019.

Lee A, Mavaddat N, Wilcox AN, Cunningham AP, Carver T, Hartley S, Babb de Villiers C, Izquierdo A, Simard J, Schmidt MK, Walter FM, Chatterjee N, Garcia-Closas M, Tischkowitz M, Pharoah P, Easton DF, Antoniou AC: BOADICEA: a comprehensive breast cancer risk prediction model incorporating genetic and nongenetic risk factors. Genet Med 21(8):1708-1718, 2019.

Mavaddat N, Michailidou K, ..., Chatterjee N, et al: Polygenic risk scores for prediction of breast cancer and breast cancer subtypes. Am J Hum Genet 104(1):21-34, 2019.

Meisner A, Kundu P, Chatterjee N: Case-only analysis of gene-environment interactions using polygenic risk scores. Am J Epidemiol 188(11):2013-2020, 2019.

Qi G, Chatterjee N: Mendelian randomization analysis using mixture models for robust and efficient estimation of causal effects. Nat Commun 10(1):1941, 2019.

Ratnapriya R, Sosina OA, Starostik MR, Kwicklis M, Kapphahn RJ, Fritsche LG, Walton A, Arvanitis M, Gieser L, Pietraszkiewicz A, Montezuma SR, Chew EY, Battle A, Abecasis GR, Ferrington DA, Chatterjee N, Swaroop A: Retinal transcriptome and eQTL analyses identify genes associated with age-related macular degeneration. Nat Genet 51(4):606-610, 2019.

Vachon CM, Scott CG, Tamimi RM, Thompson DJ, ..., Chatterjee N, et al: Joint association of mammographic density adjusted for age and body mass index and polygenic risk score with breast cancer risk. Breast Cancer Res 21(1):68, 2019.

Elizabeth Chin (go to top of document)

Huynh BQ, Chin ET, Kiang MV: Estimated childhood lead exposure from drinking water in Chicago. JAMA Pediatr 178(5):473-479, 2024.

Huynh BQ, Chin ET, Spiegel PB: No evidence of inflated mortality reporting from the Gaza Ministry of Health. Lancet 403(10421):23-24, 2024.

Rosenblum M, Chin ET, Ogburn EL, Nishimura A, Westreich D, Datta A, et al: Misuse of statistical method results in highly biased interpretation of forensic evidence in Guyll et al. Law Prob Risk 23(1):mgad010, 2024.

Chin ET, Leidner D, Lamson L, Lucas K, Studdert DM, Goldhaber-Fiebert JD, Andrews JR, Salomon JA: Protection against omicron from vaccination and previous infection in a prison system. N Engl J Med 387(19):1770-1782, 2022.

Chin ET, Leidner D, Zhang Y, Long E, Prince L, Schrag SJ, Verani JR, Wiegand RE, Alarid-Escudero F, Goldhaber-Fiebert JD, Studdert DM, Andrews JR, Salomon JA: Effectiveness of coronavirus disease 2019 (COVID-19) vaccines among incarcerated people in California state prisons: retrospective cohort study. Clin Infect Dis 75(1):e838-e845, 2022.

Prince L, Long E, Studdert DM, Leidner D, Chin ET, Andrews JR, Salomon JA, Goldhaber-Fiebert JD: Uptake of COVID-19 vaccination among frontline workers in California state prisons. JAMA Health Forum 3(3):e220099, 2022.

Uppal N, Chin ET, Erfani P, Sandoval RS, Lee CH, Mishori R, Peeler KR: Trends in decarceration, COVID-19 cases, and SARS-CoV-2 testing in US immigration detention centers from September 2020 to August 2021. JAMA Netw Open 5(2):e2148859, 2022.

Uppal N, Chin ET, Lee CH, Erfani P, Peeler KR: International medical graduates and practice rates in underserved communities in Florida. Healthc 10(2):100628, 2022.

Chin ET, Huynh BQ, Chapman LAC, Murrill M, Basu S, Lo NC: Frequency of routine testing for coronavirus disease 2019 (COVID-19) in high-risk healthcare environments to reduce outbreaks. Clin Infect Dis 73(9):e3127-e3129, 2021.

Chin ET, Leidner D, Ryckman T, Liu YE, Prince L, Alarid-Escudero F, Andrews JR, Salomon JA, Goldhaber-Fiebert JD, Studdert DM: Covid-19 vaccine acceptance in California state prisons. N Engl J Med 385(4):374-376, 2021.

Chin ET, Leidner D, Zhang Y, Long E, Prince L, Li Y, Andrews JR, Studdert DM, Goldhaber-Fiebert JD, Salomon JA: Effectiveness of the mRNA-1273 vaccine during a SARS-CoV-2 delta outbreak in a prison. N Engl J Med 385(24):2300-2301, 2021.

Chin ET, Ryckman T, Prince L, Leidner D, Alarid-Escudero F, Andrews JR, Salomon JA, Studdert DM, Goldhaber-Fiebert JD: COVID-19 in the California state prison system: an observational study of decarceration, ongoing risks, and risk factors. J Gen Intern Med 36(10):3096-3102, 2021.

Erfani P, Chin ET, Lee CH, Uppal N, Peeler KR: Suicide rates of migrants in United States immigration detention (2010-2020). AIMS Public Health 8(3):416-420, 2021.

Huynh BQ, Kwong LH, Kiang MV, Chin ET, Mohareb AM, Jumaan AO, Basu S, Geldsetzer P, Karaki FM, Rehkopf DH: Public health impacts of an imminent Red Sea oil spill. Nat Sustain 4(12):1084-1091, 2021.

Kiang MV, Chin ET, Huynh BQ, Chapman LAC, Rodriguez-Barraquer I, Greenhouse B, Rutherford GW, Bibbins-Domingo K, Havlir D, Basu S, Lo NC: Routine asymptomatic testing strategies for airline travel during the COVID-19 pandemic: a simulation study. Lancet Infect Dis 21(7):929-938, 2021.

Ryckman T, Chin ET, Prince L, Leidner D, Long E, Studdert DM, Salomon JA, Alarid-Escudero F, Andrews JR, Goldhaber-Fiebert JD: Outbreaks of COVID-19 variants in US prisons: a mathematical modelling analysis of vaccination and reopening policies. Lancet Public Health 6(10):e760-e770, 2021.

Chin ET, Huynh BQ, Lo NC, Hastie T, Basu S: Projected geographic disparities in healthcare worker absenteeism from COVID-19 school closures and the economic feasibility of child care subsidies: a simulation study. BMC Med 18(1):218, 2020.

Paige SL, Galdos FX, Lee S, Chin ET, Ranjbarvaziri S, Feyen DAM, Darsha AK, Xu S, Ryan JA, Beck AL, Qureshi MY, Miao Y, Gu M, Bernstein D, Nelson TJ, Mercola M, Rabinovitch M, Ashley EA, Parikh VN, Wu SM: Patient-specific induced pluripotent stem cells implicate intrinsic impaired contractility in hypoplastic left heart syndrome. Circulation 142(16):1605-1608, 2020.

Cordero P, Parikh VN, Chin ET, Erbilgin A, et al: Pathologic gene network rewiring implicates PPP1R3A as a central regulator in pressure overload heart failure. Nat Commun 10(1):2760, 2019.

Gwendolyn Clemens (go to top of document)

Newman-Toker DE, Nassery N, Schaffer AC, Yu-Moe CW, Clemens GD, Wang Z, Zhu Y, Saber Tehrani AS, Fanai M, Hassoon A, Siegal D: Burden of serious harms from diagnostic error in the USA. BMJ Qual Saf 33(2):109-120, 2024.

Deal JA, Jiang K, Betz JF, Clemens GD, Zhu J, Reed NS, Garibaldi BT, Swenor BK: COVID-19 clinical outcomes by patient disability status: A retrospective cohort study. Disabil Health J 16(2):101441, 2023.

D'Souza G, Clemens G, Strickler HD, Wiley DJ, Troy T, Struijk L, Gillison M, Fakhry C: Long-term persistence of oral HPV over 7 years of follow-up. JNCI Cancer Spectr 4(5):pkaa047, 2020.

Newman-Toker DE, Wang Z, Zhu Y, Nassery N, Saber Tehrani AS, Schaffer AC, Yu-Moe CW, Clemens GD, Fanai M, Siegal D: Rate of diagnostic errors and serious misdiagnosis-related harms for major vascular events, infections, and cancers: toward a national incidence estimate using the "Big Three." Diagnosis 8(1):67-84, 2020.

D'Souza G, Clemens G, Troy T, Castillo RG, Struijk L, Waterboer T, Bender N, Pierorazio PM, Best SR, Strickler H, Wiley DJ, Haddad RI, Posner M, Fakhry C: Evaluating the utility and prevalence of HPV biomarkers in oral rinses and serology for HPV-related oropharyngeal cancer. Cancer Prev Res 12(10):689-700, 2019.

Newman-Toker DE, Schaffer AC, Yu-Moe CW, Nassery N, Saber Tehrani AS, Clemens GD, Wang Z, Zhu Y, Fanai M, Siegal D: Serious misdiagnosis-related harms in malpractice claims: The "Big Three" - vascular events, infections, and cancers. Diagnosis 6(3):227-240, 2019.

Sharkey P, Pinilla-Monsalve G, Rigamonti A, Carson K, Robison J, Vivas-Buitrago T, Jusue-Torres I, Clemens G, Sanyal A, Hoffberger J, Sankey EW, Lu J, Adams A, Rigamonti D: Health care expenditures of Medicare beneficiaries with normal pressure hydrocephalus. World Neurosurg 127:e548-e555, 2019.

Elizabeth Colantuoni (Johnson) (go to top of document)

Brodsky MB, Friedman LA, Colantuoni E, Pandian V, Vertigan AE, Needham DM, Chan KS: Instrument adaptation and preliminary validation study of the Laryngeal Hypersensitivity Questionnaire used for assessment of laryngeal symptoms in patients with artificial airways. Aust Crit Care 37(1):138-143, 2024.

Etzkorn LH, Le Coent Q, van den Boogaard M, Rondeau V, Colantuoni E: A joint frailty model for recurrent and competing terminal events: application to delirium in the ICU. Stat Med 43(12):2389-2402, 2024.

Hochberg CH, Colantuoni E, Sahetya SK, Eakin MN, Fan E, Psoter KJ, Iwashyna TJ, Needham DM, Hager DN: Extended versus standard proning duration for COVID-19-associated acute respiratory distress syndrome: a target trial emulation study. Ann Am Thorac Soc 21(10):1449-1457, 2024.

Hoyer E, Young D, Ke V, Zhang JY, Colantuoni E, Farley H, Dahbura A, Ghobadi K: Association of longitudinal mobility levels in the hospital and injurious inpatient falls. Am J Phys Med Rehabil 103(3):251-255, 2024.

Pandian V, Cherukuri SPS, Koneru M, Karne V, Tajrishi FZ, Aloori S, Kota P, Dinglas V, Colantuoni E, Akst L, Hillel AT, Needham DM, Brodsky MB, PALSS Study Team: Post-extubation Assessment of Laryngeal Symptoms and Severity (PALSS) in the intensive care unit: protocol of a prospective cohort study. ORL Head Neck Nurs 42(1):8-21, 2024.

Prochaska EC, Xiao S, Colantuoni E, Clark RH, Johnson J, Mukhopadhyay S, Kalu IC, Zerr DM, Reich PJ, Roberts J, Flannery DD, Milstone AM, CDC Prevention Epicenters Program: Hospital-onset bacteremia among neonatal intensive care unit patients. JAMA Pediatr 178(8):792-799, 2024.

Sick-Samuels AC, Koontz DW, Xie A, Kelly D, Woods-Hill CZ, Aneja A, Xiao S, Colantuoni EA, Marsteller J, Milstone AM, and the BrighT STAR Authorship Group: A survey of PICU clinician practices and perceptions regarding respiratory cultures in the evaluation of ventilator-associated infections in the BrighT STAR Collaborative. Pediatr Crit Care Med 25(1):e20-e30, 2024.

Steger JS, Durai I, Odayappan A, Raman R, Sruthi T, Song AJ, Puthuran G, Venkatesh R, Colantuoni E, Robin AL: An evaluation of the efficacy and safety of timolol maleate 0.5% microdrops administered with the Nanodropper. Ophthalmology 131(9):1045-1055, 2024.

Woods-Hill CZ, Koontz DW, Xie A, Colantuoni EA, Sick-Samuels A, Miller MR, Arthur A, Aneja A, Kumar U, Milstone AM, BrighT STAR Authorship Group: Diagnostic stewardship for blood cultures in the pediatric intensive care unit: lessons in implementation from the BrighT STAR Collaborative. Antimicrob Steward Healthc Epidemiol 4(1):e148, 2024.

Young DL, Hannum SM, Engels R, Colantuoni E, Friedman LA, Hoyer EH: Dynamic prediction of post-acute care needs for hospitalized medicine patients. J Am Med Dir Assoc 25(7):104939, 2024.

Azamfirei R, Mennie C, Dinglas VD, Fatima A, Colantuoni E, et al: Impact of a multifaceted early mobility intervention for critically ill children - the PICU Up! trial: study protocol for a multicenter stepped-wedge cluster randomized controlled trial. Trials 24(1):191, 2023.

Capo-Lugo CE, Young DL, Farley H, Aquino C, McLaughlin K, Colantuoni E, Friedman LA, Kumble S, Hoyer EH: Revealing the tension: the relationship between high fall risk categorization and low patient mobility. J Am Geriatr Soc 71(5):1536-1546, 2023.

Egbert ER, Xiao S, Prochaska E, Ali SO, Colantuoni E, Gadala A, Koontz D, Zhong D, Schumacher CM, Sick-Samuels AC, Debes AK, Milstone AM: Association of healthcare worker behaviors with coronavirus disease 2019 (COVID-19) risk during four pandemic periods and characteristics associated with high-risk behaviors. Antimicrob Steward Healthc Epidemiol 3(1):e16, 2023.

Hoyer EH, Friedman M, Lavezza A, Flanagan E, Kumble S, D'Alessandro M, Gutierrez M, Colantuoni E, Brotman DJ, Young DL: A unit-based, multi-center evaluation of adopting mobility measures and daily mobility goals in the hospital setting. Appl Nurs Res 70:151655, 2023.

Manohar S, Colantuoni E, Thorne-Lyman AL, Shrestha B, Adhikari RK, Kc A, Bhattarai A, West KP Jr: Evaluating preschool linear growth velocities: an interim reference illustrated in Nepal. Public Health Nutr 26(12):2704-2716, 2023.

Woods-Hill CZ, Koontz DW, Colantuoni EA, Xiao S, Xie A, Miller MR, Milstone AM, Bright STAR Authorship Group: Sustainability of the Bright STAR diagnostic stewardship program to reduce blood culture rates among critically ill children. JAMA Pediatr 177(11):1234-1237, 2023.

Xiao S, Woods-Hill CZ, Koontz D, Thurm C, Richardson T, Milstone AM, Colantuoni E, Bright STAR Authorship Group: Comparison of administrative database-derived and hospital-derived data for monitoring blood culture use in the pediatric intensive care unit. J Pediatric Infect Dis Soc 12(7):436-442, 2023.

Xie A, Koontz DW, Colantuoni EA, Voskertchian A, Miller MR, Fackler JC, Milstone AM, Woods-Hill CZ: Application of participatory ergonomics to the dissemination of a quality improvement program for optimizing blood culture use. Jt Comm J Qual Patient Saf 49(10):529-538, 2023.

Brown CH, Lewis A, Probert J, Parish M, Tian J, Mandal K, Everett A, Colantuoni E, Kamath V, Hogue C, Moghekar A: Perioperative neurofilament light plasma concentrations and cognition before and after cardiac surgery: a prospective nested cohort study. Anesthesiology 137(3):303-314, 2022.

Debes AK, Xiao S, Egbert ER, Caturegli P, Gadala A, Colantuoni E, Sitaras I, Pekosz A, Milstone AM: Neutralizing SARS-CoV-2 spike antibodies against omicron in paired samples after two or three doses of mRNA vaccine. Microbiol Spectr 10(5):e0204622, 2022.

Hashem MD, Hopkins RO, Colantuoni E, Dinglas VD, Sinha P, Aronson Friedman L, Morris PE, Jackson JC, Hough CL, Calfee CS, Needham DM: Six-month and 12-month patient outcomes based on inflammatory subphenotypes in sepsis-associated ARDS: secondary analysis of SAILS-ALTOS trial. Thorax 77(1):22-30, 2022.

Hiser S, Urbanek J, Young DL, McLaughlin KH, Colantuoni E, Brotman DJ, Needham DM, Hoyer E: Improving patient selection for use of consumer grade physical activity monitors in the hospital. Braz J Phys Ther 26(5):100447, 2022.

Johnson J, Latif A, Randive B, Kadam A, ..., Colantuoni E, et al: Implementation of the Comprehensive Unit-Based Safety Program to improve infection prevention and control practices in four neonatal intensive care units in Pune, India. Front Pediatr 9:794637, 2022.

Lemberg KM, Koontz DW, Young DJ, DiDomizio PG, King A, Chen AR, Gamper CJ, Colantuoni E, Milstone AM, Cooper SL: Trainee-led engagement of the care team improves application of an institutional blood culture clinical decision algorithm to pediatric oncology inpatients: a single-institution quality improvement project. Pediatr Qual Saf 7(2):e545, 2022.

Pytell JD, Thakrar AP, Chander G, Colantuoni E: Changes in alcohol consumption by beverage type attributable to the COVID-19 pandemic for 10 states, March 2020 to November 2020: an ecological simulation-based analysis. J Addict Med 16(6):e412-e416, 2022.

Woods-Hill CZ, Colantuoni EA, Koontz DW, Voskertchian A, et al: Association of diagnostic stewardship for blood cultures in critically ill children with culture rates, antibiotic use, and patient outcomes: Results of the Bright STAR collaborative. JAMA Pediatr 176(7):690-698, 2022.

Ambalam V, Sick-Samuels AC, Johnson J, Colantuoni E, Gadala A, Rock C, Milstone AM, CDC Prevention Epicenter Program: Impact of postnatal age on neonatal intensive care unit bloodstream infection reporting. Am J Infect Control 49(9):1191-1193, 2021.

Baldwin MR, Pollack LR, Friedman RA, Norris SP, Javaid A, O'Donnell MR, Cummings MJ, Needham DM, Colantuoni E, Maurer MS, Lederer DJ: Frailty subtypes and recovery in older survivors of acute respiratory failure: a pilot study. Thorax 76(4):350-359, 2021.

Berney S, Hopkins RO, Rose JW, Koopman R, Puthucheary Z, Pastva A, Gordon I, Colantuoni E, Parry SM, Needham DM, Denehy L: Functional electrical stimulation in-bed cycle ergometry in mechanically ventilated patients: a multicentre randomised controlled trial. Thorax 76(7):656-663, 2021.

Brown CH, Edwards C, Lin C, Jones EL, Yanek LR, Esmaili M, Gorashi Y, Skelton R, Kaganov D, Curto R, Lessing NL, Cha S, Colantuoni E, Neufeld K, Sieber F, Dean CL, Hogue CW: Spinal anesthesia with targeted sedation based on bispectral index values compared with general anesthesia with masked bispectral index values to reduce delirium: The SHARP Randomized Controlled Trial. Anesthesiology 135(6):992-1003. 2021.

Cichowitz C, Loevinsohn G, Klein EY, Colantuoni E, Galiatsatos P, Rennert J, Irvin NA: Racial and ethnic disparities in hospital observation in Maryland. Am J Emerg Med 46:532-538, 2021.

Colantuoni E: Clarifying the impact of predicted versus observed control arm mortality rates on randomized trials in critical illness. Crit Care Med 49(4):e483-e484, 2021.

Colantuoni E, Koneru M, Akhlaghi N, Li X, Hashem MD, Dinglas VD, Neufeld KJ, Harhay MO, Needham DM: Heterogeneity in design and analysis of ICU delirium randomized trials: a systematic review. Trials 22(1):354, 2021.

Colantuoni E, Li X, Hashem MD, Girard TD, Scharfstein DO, Needham DM: A structured methodology review showed analyses of functional outcomes are frequently limited to "survivors only" in trials enrolling patients at high risk of death. J Clin Epidemiol 137:126-132, 2021.

Debes AK, Xiao S, Colantuoni E, Egbert ER, Caturegli P, Gadala A, Milstone AM: Association of vaccine type and prior SARS-CoV-2 infection with symptoms and antibody measurements following vaccination among health care workers. JAMA Intern Med 181(12):1660-1662, 2021.

Egbert ER, Xiao S, Colantuoni E, Caturegli P, Gadala A, Milstone AM, Debes AK: Durability of spike immunoglobin G antibodies to SARS-CoV-2 among health care workers with prior infection. JAMA Netw Open 4(8):e2123256, 2021.

Hiser S, Chung CR, Toonstra A, Friedman LA, Colantuoni E, Hoyer E, Needham DM: Inter-rater reliability of the Johns Hopkins Highest Level of Mobility Scale (JH-HLM) in the intensive care unit. Braz J Phys Ther 25(3):352-355, 2021.

Kelly JTD, Colantuoni E, Robinson C, Decker MR: Quantifying the ripple effects of civil war: how armed conflict is associated with more severe violence in the home. Health Hum Rights 23(1):75-89, 2021.

Nakano M, Nomura Y, Whitman G, Sussman M, Schena S, Kilic A, Choi CW, Akiyoshi K, Neufeld KJ, Lawton J, Colantuoni E, Yamaguchi A, Wen M, Smielewski P, Brady K, Bush B, Hogue CW, Brown CH 4th: Cerebral autoregulation in the operating room and intensive care unit after cardiac surgery. Br J Anaesth 126(5):967-974, 2021.

Parry SM, Nalamalapu SR, Nunna K, Rabiee A, Friedman LA, Colantuoni E, Needham DM, Dinglas VD: Six-minute walk distance after critical illness: a systematic review and meta-analysis. J Intensive Care Med 36(3):343-351, 2021.

Peitzmeier SM, Wirtz AL, Beyrer C, Peryshkina A, Sherman SG, Colantuoni E, Decker MR: Polyvictimization among Russian sex workers: intimate partner, police, and pimp violence cluster with client violence. J Interpers Violence 36(15-16):NP8056-NP8081, 2021.

Sick-Samuels AC, Linz M, Bergmann J, Fackler JC, Berenholtz SM, Ralston SL, Hoops K, Dwyer J, Colantuoni E, Milstone AM: Diagnostic stewardship of endotracheal aspirate cultures in a PICU. Pediatrics 147(5):e20201634, 2021.

Tonna JE, Dalton A, Presson AP, Zhang C, Colantuoni E, Lander K, Howard S, Beynon J, Kamdar BB: The effect of a quality improvement intervention on sleep and delirium in critically ill patients in a surgical ICU. Chest 160(3):899-908, 2021.

Ward DS, Absalom AR, Aitken LM, Balas MC, Brown DL, Burry L, Colantuoni E, Coursin D, Devlin JW, Dexter F, Dworkin RH, Egan TD, Elliott D, Egerod I, Flood P, Fraser GL, Girard TD, Gozal D, Hopkins RO, Kress J, Maze M, Needham DM, Pandharipande P, Riker R, Sessler DI, Shafer SL, Shehabi Y, Spies C, Sun LS, Tung A, Urman RD: Design of clinical trials evaluating sedation in critically ill adults undergoing mechanical ventilation: recommendations from Sedation Consortium on Endpoints and Procedures for Treatment, Education, and Research (SCEPTER) Recommendation III. Crit Care Med 49(10):1684-1693, 2021.

Zanettini C, Omar M, Dinalankara W, Imada EL, Colantuoni E, Parmigiani G, Marchionni L: covid19census: U.S. and Italy COVID-19 metrics and other epidemiological data. Database 2021:baab027, 2021.

Zanettini C, Omar M, Dinalankara W, Imada EL, Colantuoni E, Parmigiani G, Marchionni L: Influenza vaccination and COVID-19 mortality in the USA: an ecological study. Vaccines 9(5):427, 2021.

Zhao N, Khamash DF, Koh H, Voskertchian A, Egbert E, Mongodin EF, White JR, Hittle L, Colantuoni E, Milstone AM: Low diversity in nasal microbiome associated with Staphylococcus aureus colonization and bloodstream infections in hospitalized neonates. Open Forum Infect Dis 8(10):ofab475, 2021.

Zhong D, Xiao S, Debes AK, Egbert ER, Caturegli P, Colantuoni E, Milstone AM: Durability of antibody levels after vaccination with mRNA SARS-CoV-2 vaccine in individuals with or without prior infection. JAMA 326(24):2524-2526, 2021.

Dougherty GB, Golden SH, Gross AL, Colantuoni E, Dean LT: Measuring structural racism and its association with BMI. Am J Prev Med 59(4):530-537, 2020.

Friedman LA, Young DL, Nelliot A, Colantuoni E, Mendez-Tellez PA, Needham DM, Dinglas VD: Factors associated with home visits in a 5-year study of acute respiratory distress syndrome survivors. Am J Crit Care 29(6):429-438, 2020.

Gupta P, Martin JL, Needham DM, Vangala S, Colantuoni E, Kamdar BB: Use of actigraphy to characterize inactivity and activity in patients in a medical ICU. Heart Lung 49(4):398-406, 2020.

Hiser S, Toonstra A, Friedman LA, Colantuoni E, Needham DM: Inter-rater reliability of activity measure for post-acute care '6-Clicks' inpatient mobility short form in the intensive care unit. Physiother Res Int 25(4):e1849, 2020.

Hoops KEM, Fackler JC, King A, Colantuoni E, Milstone AM, Woods-Hill C: How good is our diagnostic intuition? Clinician prediction of bacteremia in critically ill children. BMC Med Inform Decis Mak 20(1):144, 2020.

Kamdar BB, Suri R, Suchyta MR, Digrande KF, Sherwood KD, Colantuoni E, Dinglas VD, Needham DM, Hopkins RO: Return to work after critical illness: a systematic review and meta-analysis. Thorax 75(1):17-27, 2020.

Milstone AM, Voskertchian A, Koontz DW, Khamash DF, Ross T, Aucott SW, Gilmore MM, Cosgrove SE, Carroll KC, Colantuoni E: Effect of treating parents colonized with Staphylococcus aureus on transmission to neonates in the intensive care unit: a randomized clinical trial. JAMA 323(4):319-328, 2020.

Nunna K, Al-Ani A, Nikooie R, Friedman LA, Raman V, Wadood Z, Vasishta S, Colantuoni E, Needham DM, Dinglas VD: Participant retention in follow-up studies of acute respiratory failure survivors. Respir Care 65(9):1382-1391, 2020.

Peitzmeier SM, Wirtz AL, Peryshkina A, Sherman S, Colantuoni E, Beyrer C, Decker MR: Associations between violence and HIV risk behaviors differ by perpetrator among Russian sex workers. AIDS Behav 24(3):812-822, 2020.

Rawal H, Young DL, Nikooie R, Al Ani AH, Friedman LA, Vasishta S, Haut ER, Colantuoni E, Needham DM, Dinglas VD: Participant retention in trauma intensive care unit (ICU) follow-up studies: a post-hoc analysis of a previous scoping review. Trauma Surg Acute Care Open 5(1):e000584, 2020.

Semler MW, Bernard GR, Aaron SD, Angus DC, Biros MH, Brower RG, Calfee CS, Colantuoni EA, et al: Identifying clinical research priorities in adult pulmonary and critical care: NHLBI working group report. Am J Respir Crit Care Med 202(4):511-523, 2020.

Wang C, Colantuoni E, Leroux A, Scharfstein DO: idem: an R package for inferences in clinical trials with death and missingness. J Stat Softw 93:12, 2020.

Woods-Hill CZ, Koontz DW, King AF, Voskertchian A, Colantuoni EA, Miller MR, Fackler JC, Bonafide CP, Milstone AM, Xie A, Bright Star Authorship group: Practices, perceptions, and attitudes in the evaluation of critically ill children for bacteremia: a national survey. Pediatr Crit Care Med 21(1):e23-e29, 2020.

Young DL, Colantuoni E, Friedman LA, Seltzer J, Daley K, Ye B, Brotman DJ, Hoyer EH: Prediction of disposition within 48-hours of hospital admission using patient mobility scores. J Hosp Med 15(9):540-543, 2020.

Brown CH 4th, Jones EL, Lin C, Esmaili M, Gorashi Y, Skelton RA, Kaganov D, Colantuoni EA, Yanek LR, Neufeld KJ, Kamath V, Sieber FE, Dean CL, Edwards CC 2nd, Hogue CW: Shaping anesthetic techniques to reduce post-operative delirium (SHARP) study: a protocol for a prospective pragmatic randomized controlled trial to evaluate spinal anesthesia with targeted sedation compared with general anesthesia in older adults undergoing lumbar spine fusion surgery. BMC Anesthesiol 19(1):192, 2019.

Diaz I, Colantuoni E, Hanley DF, Rosenblum M: Improved precision in the analysis of randomized trials with survival outcomes, without assuming proportional hazards. Lifetime Data Anal 25(3):439-468, 2019.

Gibbs SE, Kusunoki Y, Colantuoni E, Moreau C: Sexual activity and weekly contraceptive use among young adult women in Michigan. Popul Stud 73(2):233-245, 2019.

Johnson J, Suwantarat N, Colantuoni E, Ross TL, Aucott SW, Carroll KC, Milstone AM: The impact of chlorhexidine gluconate bathing on skin bacterial burden of neonates admitted to the Neonatal Intensive Care Unit. J Perinatol 39(1):63-71, 2019.

Kelly J, Colantuoni E, Robinson C, Decker MR: From political to personal violence: links between conflict and non-partner physical violence in post-conflict Liberia. Glob Public Health 14(12):1639-1652, 2019.

Khamash DF, Mongodin EF, White JR, Voskertchian A, Hittle L, Colantuoni E, Milstone AM: Association between the developing nasal microbiota of hospitalized neonates and Staphylococcus aureus colonization. Open Forum Infect Dis 6(4):ofz062, 2019.

Rosenberg BJ, Hirano M, Quinzii CM, Colantuoni E, Needham DM, Lederer DJ, Baldwin MR: Growth differentiation factor-15 as a biomarker of strength and recovery in survivors of acute respiratory failure. Thorax 74(11):1099-1101, 2019.

Sick-Samuels AC, Woods-Hill CZ, Fackler JC, Tamma PD, Klaus SA, Colantuoni EE, Milstone AM: Association of a blood culture utilization intervention on antibiotic use in a pediatric intensive care unit. Infect Control Hosp Epidemiol 40(4):482-484, 2019.

Turnbull AE, Hayes MM, Brower RG, Colantuoni E, Basyal PS, White DB, Curtis JR, Needham DM: Effect of documenting prognosis on the information provided to ICU proxies: a randomized trial. Crit Care Med 47(6):757-764, 2019.

Wilhelm JA, Qiu M, Paina L, Colantuoni E, Mukuru M, Ssengooba F, Bennett S: The impact of PEPFAR transition on HIV service delivery at health facilities in Uganda. PLoS One 14(10):e0223426, 2019.

Wozniak AW, Pfoh ER, Dinglas VD, Pronovost PJ, Needham DM, Colantuoni E: Hospital readmission and subsequent decline in long-term survivors of acute respiratory distress syndrome. Am J Crit Care 28(1):76-80, 2019.

Bienvenu OJ, Friedman LA, Colantuoni E, Dinglas VD, Sepulveda KA, Mendez-Tellez P, Shanholz C, Pronovost PJ, Needham DM: Psychiatric symptoms after acute respiratory distress syndrome: a 5-year longitudinal study. Intensive Care Med 44(1):38-47, 2018.

Colantuoni E, Scharfstein DO, Wang C, Hashem MD, Leroux A, Needham DM, Girard TD: Statistical methods to compare functional outcomes in randomized controlled trials with high mortality. BMJ 360:j5748, 2018.

Dinglas VD, Chessare CM, Davis WE, Parker A, Friedman LA, Colantuoni E, Bingham CO, Turnbull AE, Needham DM: Perspectives of survivors, families and researchers on key outcomes for research in acute respiratory failure. Thorax 73(1):7-12, 2018.

Ettinger AK, Riley AW, Colantuoni E, Mendelson T: Trajectories of early parenting practices among low-income ethnically diverse women. J Child Fam Stud 27(2):615-628, 2018.

Heins SE, Wozniak AW, Colantuoni E, Sepulveda KA, Mendez-Tellez PA, Dennison-Himmelfarb C, Needham DM, Dinglas VD: Factors associated with missed assessments in a 2-year longitudinal study of acute respiratory distress syndrome survivors. BMC Med Res Methodol 18(1):55, 2018.

Hiser S, Toonstra A, Friedman LA, Colantuoni E, Connolly B, Needham DM: Interrater reliability of the functional status score for the intensive care unit. JACPT 9(4):186-192, 2018.

Kamdar BB, Sepulveda KA, Chong A, Lord RK, Dinglas VD, Mendez-Tellez PA, Shanholtz C, Colantuoni E, von Wachter TM, Pronovost PJ, Needham DM: Return to work and lost earnings after acute respiratory distress syndrome: a 5-year prospective, longitudinal study of long-term survivors. Thorax 73(2):125-133, 2018.

Kelly JTD, Colantuoni E, Robinson C, Decker MR: From the battlefield to the bedroom: a multilevel analysis of the links between political conflict and intimate partner violence in Liberia. BMJ Glob Health 3(2):e000668, 2018.

Mroz TM, Meadow A, Colantuoni E, Leff B, Wolff JL: Home health agency characteristics and quality outcomes for Medicare beneficiaries with rehabilitation-sensitive conditions. Arch Phys Med Rehabil 99(6):1090-1098, 2018.

Turnbull AE, Sahetya SK, Colantuoni E, Kweku J, Nikooie R, Curtis JR: Inter-rater agreement of intensivists evaluating the goal concordance of preference-sensitive ICU interventions. J Pain Symptom Manage 56(3):406-413, 2018.

Voskertchian A, Akinboyo IC, Colantuoni E, Johnson J, Milstone AM: Association of an active surveillance and decolonization program on incidence of clinical cultures growing Staphylococcus aureus in the neonatal intensive care unit. Infec Control Hosp Epidemiol 39(7):882-884, 2018.

Wong MS, Chan KS, Jones-Smith JC, Colantuoni E, Thorpe RJ Jr, Bleich SN: The neighborhood environment and obesity: understanding variation by race/ethnicity. Prev Med 111:371-377, 2018.

Woods-Hill CZ, Lee L, Xie A, King AF, Voskertchian A, Klaus SA, Smith MM, Miller MR, Colantuoni EA, Fackler JC, Milstone AM: Dissemination of a novel framework to improve blood culture use in pediatric critical care. Pediatr Qual Saf 3(5):e112, 2018.

Leonardo Collado Torres (go to top of document)

Benjamin KJM, Arora R, Feltrin AS, Pertea G, Giles HH, Stolz JM, D'Ignazio L, Collado-Torres L, Shin JH, et al: Sex affects transcriptional associations with schizophrenia across the dorsolateral prefrontal cortex, hippocampus, and caudate nucleus. Nat Commun 15(1):3980, 2024.

Benjamin KJM, Chen Q, Eagles NJ, Huuki-Myers LA, Collado-Torres L, Stolz JM, Pertea G, Shin JH, Paquola ACM, Hyde TM, Kleinman JE, Jaffe AE, Han S, Weinberger DR: Analysis of gene expression in the postmortem brain of neurotypical Black Americans reveals contributions of genetic ancestry. Nat Neurosci 27(6):1064-1074, 2024.

Daskalakis NP, Iatrou A, Chatzinakos C, ..., Collado-Torres L, et al: Systems biology dissection of PTSD and MDD across brain regions, cell types, and blood. Science 384(6698):eadh3707, 2024.

Deng C, Whalen S, Steyert M, ..., PsychENCODE Consortium (includes Collado Torres L): Massively parallel characterization of regulatory elements in the developing human cortex. Science 384(6698):eadh0559, 2024.

Emani PS, Liu JJ, Clarke D, ..., PsychENCODE Consortium (includes Collado Torres L): Single-cell genomics and regulatory networks for 388 human brains. Science 384(6698):eadi5199, 2024.

Huuki-Myers LA, Spangler A, Eagles NJ, ..., Guo B, ..., Hicks SC, ..., Collado-Torres L, et al: A data-driven single-cell and spatial transcriptomic map of the human prefrontal cortex. Science 384(6698):eadh1938, 2024.

Rodriguez LA, Tran MN, Garcia-Flores R, Oh S, Phillips RA 3rd, Pattie EA, Divecha HR, Kim SH, Shin JH, Lee YK, Montoya C, Jaffe AE, Collado-Torres L, Page SC, Martinowich K: TrkB-dependent regulation of molecular signaling across septal cell types. Transl Psychiatry 14(1):52, 2024.

Ruzicka WB, Mohammadi S, Fullard JF, ..., PsychENCODE Consortium (includes Collado Torres L): Single-cell multi-cohort dissection of the schizophrenia transcriptome. Science 384(6698):eadg5136, 2024.

Weber LM, Divecha HR, Tran MN, Kwon SH, Spangler A, Montgomery KD, Tippani M, Bharadwaj R, Kleinman JE, Page SC, Hyde TM, Collado-Torres L, Maynard KR, Martinowich K, Hicks SC: The gene expression landscape of the human locus coeruleus revealed by single-nucleus and spatially-resolved transcriptomics. eLife 12:RP84628, 2024.

Wen C, Margolis M, Dai R, ..., PsychENCODE Consortium (includes Collado Torres L, Hicks S): Cross-ancestry atlas of gene, isoform, and splicing regulation in the developing human brain. Science 384(6698):eadh0829, 2024.

Xia Y, Xia C, Jiang Y, Chen Y, Zhou J, Dai R, Han C, Mao Z, PsychENCODE Consortium (includes Collado Torres L), Liu C, Chen C: Transcriptomic sex differences in postmortem brain samples from patients with psychiatric disorders. Sci Trans Med 16(749):eadh9974, 2024.

Eagles NJ, Wilton R, Jaffe AE, Collado-Torres L: BiocMAP: a Bioconductor-friendly, GPU-accelerated pipeline for bisulfite-sequencing data. BMC Bioinformatics 24(1):340, 2023.

Garcia-Ruiz S, Gustavsson EK, Zhang D, Reynolds RH, Chen Z, Fairbrother-Browne A, Gil-Martinez AL, Botia JA, Collado-Torres L, Ryten M: IntroVerse: a comprehensive database of introns across human tissues. Nucleic Acids Res 51(D1):D167-D178, 2023.

Guo B, Huuki-Myers LA, Grant-Peters M, Collado-Torres L, Hicks SC: escheR: unified multi-dimensional visualizations with Gestalt principles. Bioinform Adv 3(1):vbad179, 2023.

Huuki-Myers LA, Montgomery KD, Kwon SH, Page SC, Hicks SC, Maynard KR, Collado-Torres L: Data-driven identification of total RNA expression genes for estimation of RNA abundance in heterogeneous cell types highlighted in brain tissue. Genome Biol 24(1):233, 2023.

Maden SK, Kwon SH, Huuki-Myers LA, Collado-Torres L, Hicks SC, Maynard KR: Challenges and opportunities to computationally deconvolve heterogeneous tissue with varying cell sizes using single-cell RNA-sequencing datasets. Genome Biol 24(1):288, 2023.

Nelson ED, Maynard KR, Nicholas KR, Tran MN, Divecha HR, Collado-Torres L, Hicks SC, Martinowich K: Activity-regulated gene expression across cell types of the mouse hippocampus. Hippocampus 33(9):1009-1027, 2023.

Benjamin KJM, Chen Q, Jaffe AE, Stolz JM, Collado-Torres L, et al: Analysis of the caudate nucleus transcriptome in individuals with schizophrenia highlights effects of antipsychotics and new risk genes. Nat Neurosci 25(11):1559-1568, 2022.

Pardo B, Spangler A, Weber LM, Page SC, Hicks SC, Jaffe AE, Martinowich K, Maynard KR, Collado-Torres L: spatialLIBD: an R/Bioconductor package to visualize spatially-resolved transcriptomics data. BMC Genomics 23(1):434, 2022.

Punzi G, Ursini G, Chen Q, Radulescu E, Tao R, Huuki LA, Di Carlo P, Collado-Torres L, Shin JH, Catanesi R, Jaffe AE, et al: Genetics and brain transcriptomics of completed suicide. Am J Psychiatry 179(3):226-241, 2022.

Righelli D, Weber LM, Crowell HL, Pardo B, Collado-Torres L, Ghazanfar S, Lun ATL, Hicks SC, Risso D: SpatialExperiment: infrastructure for spatially resolved transcriptomics data in R using Bioconductor. Bioinformatics 38(11):3128-3131, 2022.

Zandi PP, Jaffe AE, Goes FS, Burke EE, Collado-Torres L, et al: Amygdala and anterior cingulate transcriptomes from individuals with bipolar disorder reveal downregulated neuroimmune and synaptic pathways. Nat Neurosci 25(3):381-389, 2022.

Clifton NE, Collado-Torres L, Burke EE, Pardinas AF, et al: Developmental profile of psychiatric risk associated with voltage-gated cation channel activity. Biol Psychiatry 90(6):399-408, 2021.

Eagles NJ, Burke EE, Leonard J, ..., Jaffe AE, Collado-Torres L: SPEAQeasy: a scalable pipeline for expression analysis and quantification for R/bioconductor-powered RNA-seq analyses. BMC Bioinformatics 22(1):224, 2021.

Hu B, Won H, Mah W, Park RB, Kassim B, Spiess K, Kozlenkov A, Crowley CA, Pochareddy S; PsychENCODE Consortium (includes Collado-Torres L), et al: Neuronal and glial 3D chromatin architecture informs the cellular etiology of brain disorders. Nat Commun 12(1):3968, 2021.

Maynard KR, Collado-Torres L, Weber LM, Uytingco C, Barry BK, Williams SR, Catallini JL 2nd, Tran MN, Besich Z, Tippani M, Chew J, Yin Y, Kleinman JE, Hyde TM, Rao N, Hicks SC, Martinowich K, Jaffe AE: Transcriptome-scale spatial gene expression in the human dorsolateral prefrontal cortex. Nat Neurosci 24(3):425-436, 2021.

Perzel Mandell KA, Eagles NJ, ..., Collado-Torres L, et al: Genome-wide sequencing-based identification of methylation quantitative trait loci and their role in schizophrenia risk. Nat Commun 112(1):5251, 2021.

Perzel Mandell KA, Price AJ, Wilton R, Collado-Torres L, Tao R, Eagles NJ, Szalay AS, Hyde TM, Weinberger DR, Kleinman JE, Jaffe AE: Characterizing the dynamic and functional DNA methylation landscape in the developing human cortex. Epigenetics 16(1):1-13, 2021.

Tran MN, Maynard KR, Spangler A, Huuki LA, Montgomery KD, Sadashivaiah V, Tippani M, Barry BK, Hancock DB, Hicks SC, Kleinman JE, Hyde TM, Collado-Torres L, Jaffe AE, Martinowich K: Single-nucleus transcriptome analysis reveals cell-type-specific molecular signatures across reward circuitry in the human brain. Neuron 109(19):3088-3103, 2021.

Wilks C, Ahmed O, Baker DN, Zhang D, Collado-Torres L, Langmead B: Megadepth: efficient coverage quantification for BigWigs and BAMs. Bioinformatics 37(18):3014-3016, 2021.

Wilks C, Zheng SC, Chen FY, Charles R, Solomon B, Ling JP, Imada EL, Zhang D, Joseph L, Leek JT, Jaffe AE, Nellore A, Collado-Torres L, Hansen KD, Langmead B: recount3: summaries and queries for large-scale RNA-seq expression and splicing. Genome Biol 22(1):323, 2021.

Araki Y, Hong I, Gamache TR, Ju S, Collado-Torres L, Shin JH, Huganir RL: SynGAP isoforms differentially regulate synaptic plasticity and dendritic development. Elife 9:e56273, 2020.

Burke EE, Chenoweth JG, Shin JH, Collado-Torres L, et al: Dissecting transcriptomic signatures of neuronal differentiation and maturation using iPSCs. Nat Commun 11(1):462, 2020.

Chavez J, Barberena-Jonas C, Sotelo-Fonseca JE, Alquicira-Hernandez J, Salgado H, Collado-Torres L, Reyes A: Programmatic access to bacterial regulatory networks with regutools. Bioinformatics 36(16):4532-4534, 2020.

Guelfi S, D'Sa KD, Botia JA, ..., Collado-Torres L, et al: Regulatory sites for splicing in human basal ganglia are enriched for disease-relevant information. Nat Commun 11(1):1041, 2020.

Imada EL, Sanchez DF, Collado-Torres L, ..., Jaffe AE, Leek JT, et al: Recounting the FANTOM CAGE-Associated Transcriptome. Genome Res 30(7):1073-1081, 2020.

Jaffe AE, Hoeppner DJ, Saito T, Blanpain L, Ukaigwe J, Burke EE, Collado-Torres L, et al: Profiling gene expression in the human dentate gyrus granule cell layer reveals insights into schizophrenia and its genetic risk. Nat Neurosci 23(4):510-519, 2020.

Semick SA, Collado-Torres L, Markunas CA, Shin JH, Deep-Soboslay A, Tao R, Huestis MA, Bierut LJ, Maher BS, Johnson EO, Hyde TM, et al: Developmental effects of maternal smoking during pregnancy on the human frontal cortex transcriptome. Mol Psychiatry 25(12):3267-3277, 2020.

Zhang D, Guelfi S, Garcia-Ruiz S, ..., Collado-Torres L, et al: Incomplete annotation has a disproportionate impact on our understanding of Mendelian and complex neurogenetic disorders. Sci Adv 6(24):eaay8299, 2020.

Collado-Torres L, Burke E, Peterson A, Shin JH, et al: Regional heterogeneity in gene expression, regulation, and coherence in the frontal cortex and hippocampus across development and schizophrenia. Neuron 103(2):203-216, 2019.

Madugundu AK, Na CH, Nirujogi RS, Renuse S, Kim KP, Burns KH, Wilks C, Langmead B, Ellis SE, Collado-Torres L, Halushka MK, Kim MS, Pandey A: Integrated transcriptomic and proteomic analysis of primary human umbilical vein endothelial cells. Proteomics 19(15):e1800315, 2019.

Price AJ, Collado-Torres L, Ivanov NA, Xia W, et al: Divergent neuronal DNA methylation patterns across human cortical development reveal critical periods and a unique role of CpH methylation. Genome Biol 20(1):196, 2019.

Semick SA, Bharadwaj RA, Collado-Torres L, Tao R, Shin JH, Deep-Soboslay A, Weiss JR, Weinberger DR, Hyde TM, Kleinman JE, Jaffe AE, Mattay VS: Integrated DNA methylation and gene expression profiling across multiple brain regions implicate novel genes in Alzheimer's disease. Acta Neuropathol 137(4):557-569, 2019.

Wright C, Rajpurohit A, Burke EE, Williams C, Collado-Torres L, Kimos M, Brandon NJ, Cross AJ, Jaffe AE, Weinberger DR, Shin JH: Comprehensive assessment of multiple biases in small RNA sequencing reveals significant differences in the performance of widely used methods. BMC Genomics 20(1):513, 2019.

Ciprian Crainiceanu (go to top of document)

Ballard ED, Greenstein D, Reiss PT, Crainiceanu CM, Cui E, Duncan WC Jr, Hejazi NS, Zarate CA Jr.: Functional changes in sleep-related arousal after ketamine administration in individuals with treatment-resistant depression. Transl Psychiatry 14(1):238, 2024.

Etzkorn LH, Heravi AS, Knuth ND, Wu KC, Post WS, Urbanek JK, Crainiceanu CM: Classification of free-living body posture with ECG patch accelerometers: application to the Multicenter AIDS Cohort Study. Stat Biosci 16:25-44, 2024.

Leroux A, Crainiceanu C, Zeger S, Taub M, Ansari B, Wager TD, Bayman E, Coffey C, Langefeld C, McCarthy R, Tsodikov A, Brummet C, Clauw DJ, Edwards RR, Lindquist MA, A2CPS Consortium: Statistical modeling of acute and chronic pain patient-reported outcomes obtained from ecological momentary assessment. Pain 165(9):1955-1965, 2024.

Leroux A, Cui E, Smirnova E, Muschelli J, Schrack JA, Crainiceanu CM: NHANES 2011-2014: Objective physical activity is the strongest predictor of all-cause mortality. Med Sci Sports Exerc 56(10):1926-1934, 2024.

Marino FR, Wu HT, Etzkorn L, Rooney MR, Soliman EZ, Deal JA, Crainiceanu C, Spira AP, Wanigatunga AA, Schrack JA, Chen LY: Associations of physical activity and heart rate variability from a two-week ECG monitor with cognitive function and dementia: The ARIC Neurocognitive Study. Sensors 24(13):4060, 2024.

Cui E, Li R, Crainiceanu CM, Xiao L: Fast multilevel functional principal component analysis. J Comput Graph Stat 32(2):366-377, 2023.

Koffman LJ, Crainiceanu CM, Roemmich RT, French MA: Identifying unique subgroups of individuals with stroke using heart rate and steps to characterize physical activity. J Am Heart Assoc 12(18):e030577, 2023.

Koffman L, Zhang Y, Harezlak J, Crainiceanu C, Leroux A: Fingerprinting walking using wrist-worn accelerometers. Gait Posture 103:92-98, 2023.

Meng Q, Cui E, Leroux A, Mowry EM, Lindquist MA, Crainiceanu CM: Quantifying the association between objectively measured physical activity and multiple sclerosis in the UK Biobank. Med Sci Sports Exerc 55(12):2194-2202, 2023.

Sergazinov R, Leroux A, Cui E, Crainiceanu C, Aurora RN, Punjabi NM, Gaynanova I: A case study of glucose levels during sleep using multilevel fast function on scalar regression inference. Biometrics 79(4):3873-3882, 2023.

Siddharthan T, Blair PW, Cui E, Pearce J, Herrera P, Liu G, East J, Crainiceanu C, Clark DV, CCPSEI Research Team, Clinical Characterisation Protocol for Severe Infectious Diseases (CCPSEI) Research Team: Additive value of lung ultrasound to clinical parameters for prognosticating COVID-19. ERJ Open Res 9(3):00564-2022, 2023.

Torbati ME, Minhas DS, Laymon CM, Maillard P, Wilson JD, Chen CL, Crainiceanu CM, DeCarli CS, Hwang SJ, Tudorascu DL: MISPEL: A supervised deep learning harmonization method for multi-scanner neuroimaging data. Med Image Anal 89:102926, 2023.

Zhao A, Cui E, Leroux A, Lindquist MA, Crainiceanu CM: Evaluating the prediction performance of objective physical activity measures for incident Parkinson's disease in the UK Biobank. J Neurol 270(12):5913-5923, 2023.

Berardi G, Frey-Law L, ..., Lindquist M, Caffo BS, Crainiceanu C, Zeger S, ..., Taub M, et al: Multi-site observational study to assess biomarkers for susceptibility or resilience to chronic pain: The Acute to Chronic Pain Signatures (A2CPS) study protocol. Front Med 9:849214, 2022.

Blair PW, Hwang J, Pearce J, Fong TC, Cui E, Herrera P, Liu G, Crainiceanu C, Siddharthan T, Clark DV, CCPSEI Research Team: Do worsening lung ultrasound scans identify severe COVID-19 trajectories? Front Med 9:1021929, 2022.

Blair PW, Siddharthan T, Liu G, Bai J, Cui E, East J, Herrera P, Anova L, Mahadevan V, Hwang J, Hossen S, Seo S, Sonuga O, Lawrence J, Peters J, Cox AL, Manabe YC, Fenstermacher K, Shea S, Rothman RE, Hansoti B, Sauer L, Crainiceanu C, Clark DV: Point-of-care lung ultrasound predicts severe disease and death due to COVID-19: a prospective cohort study. Crit Care Explor 4(8):e0732, 2022.

Cui E, Leroux A, Smirnova E, Crainiceanu CM: Fast univariate inference for longitudinal functional models. J Comp Graph Stat 31(1): 219-230, 2022.

Etzkorn LH, Liu F, Urbanek JK, Heravi AS, Magnani JW, Plankey MW, Margolich JB, Witt MD, Palella FJ Jr, Haberlen SA, Wu KC, Post WS, Schrack JA, Crainiceanu CM: Patterns of objectively measured physical activity differ between men living with and without HIV. AIDS 36(11):1553-1562, 2022.

Gaynanova I, Punjabi N, Crainiceanu C: Modeling continuous glucose monitoring (CGM) data during sleep. Biostatistics 23(1):223-239, 2022.

Hu M, Crainiceanu C, Schindler MK, Dewey B, Reich DS, Shinohara RT, Eloyan A: Matrix decomposition for modeling lesion development processes in multiple sclerosis. Biostatistics 23(1):83-100, 2022.

Karas M, Muschelli J, Leroux A, Urbanek JK, Wanigatunga AA, Bai J, Crainiceanu CM, Schrack JA: Comparison of accelerometry-based measures of physical activity: retrospective observational data analysis study. JMIR mHealth uHealth 10(7):e38077, 2022.

Ledbetter MK, Tabacu L, Leroux A, Crainiceanu CM, Smirnova E: Cardiovascular mortality risk prediction using objectively measured physical activity phenotypes in NHANES 2003-2006. Prev Med 164:107303, 2022.

Leroux A, Frey KP, Crainiceanu CM, Obremskey WT, Stinner DJ, Bosse MJ, Karunakar MA, O'Toole RV, Carroll EA, Hak DJ, Hayda R, Alkhoury D, Schmidt AH, METRC: Defining incidence of acute compartment syndrome in the research setting: a proposed method from the PACS Study. J Orthop Trauma 36(Suppl 1):S26-S32, 2022.

Li R, Xiao L, Smirnova E, Cui E, Leroux A, Crainiceanu CM: Fixed-effects inference and tests of correlation for longitudinal functional data. Stat Med 41(17):3349-3364, 2022.

Qi G, Dutta D, Leroux A, Ray D, Muschelli J, Crainiceanu C, Chatterjee N: Genome-wide association studies of 27 accelerometry-derived physical activity measurements identified novel loci and genetic mechanisms. Genet Epidemiol 46(2):122-138, 2022.

Smirnova E, Mallow C, Muschelli J, Shao Y, Thiboutot J, Lam A, Rule AM, Crainiceanu C, Yarmus L: Predictive performance of selected breath volatile organic carbon compounds in stage 1 lung cancer. Transl Lung Cancer Res 11(6):1009-1018, 2022.

Cui E, Crainiceanu CM, Leroux A: Additive functional Cox model. J Comput Graph Stat 30(3):780-793, 2021.

Durfee AZ, Sheppard SM, Meier EL, Bunker L, Cui E, Crainiceanu C, Hillis AE: Explicit training to improve affective prosody recognition in adults with acute right hemisphere stroke. Brain Sci 11(5):667, 2021.

Eshaghzadeh Torbati M, Minhas DS, Ahmad G, O'Connor EE, Muschelli J, Laymon CM, Yang Z, Cohen AD, Aizenstein HJ, Klunk WE, Christian BT, Hwang SJ, Crainiceanu CM, Tudorascu DL: A multi-scanner neuroimaging data harmonization using RAVEL and ComBat. Neuroimage 245:118703, 2021.

Karas M, Straczkiewicz M, Fadel W, Harezlak J, Crainiceanu CM, Urbanek JK: Adaptive empirical pattern transformation (ADEPT) with application to walking stride segmentation. Biostatistics 22(2):331-347, 2021.

Karas M, Urbanek JK, Illiano VP, Bogaarts G, Crainiceanu CM, Dorn JF: Estimation of free-living walking cadence from wrist-worn sensor accelerometry data and its association with SF-36 quality of life scores. Physiol Meas 42(6):065006, 2021.

Kaufman MR, Dey D, Crainiceanu C, Dredze M: #MeToo and Google inquiries into sexual violence: a hashtag campaign can sustain information seeking. J Interpers Violence 36(19-20):9857-9867, 2021.

Lambe J, Fitzgerald KC, Murphy OC, Filippatou AG, Sotirchos ES, Kalaitzidis G, Vasileiou E, Pellegrini N, Ogbuokiri E, Toliver B, Luciano NJ, Davis S, Fioravante N, Kwakyi O, Risher H, Crainiceanu CM, Prince JL, Newsome SD, Mowry EM, Saidha S, Calabresi PA: Association of spectral-domain OCT with long-term disability worsening in multiple sclerosis. Neurology 96(16):e2058-e2069, 2021.

Leroux A, Rzasa-Lynn R, Crainiceanu C, Sharma T: Wearable devices: current status and opportunities in pain assessment and management. Digit Biomark 5(1):89-102, 2021.

Leroux A, Xu S, Kundu P, Muschelli J, Smirnova E, Chatterjee N, Crainiceanu C: Quantifying the predictive performance of objectively measured physical activity on mortality in the UK Biobank. J Gerontol A Biol Sci Med Sci 76(8):1486-1494, 2021.

Malone SK, Patterson F, Grunin L, Melkus GD, Riegel B, Punjabi N, Yu G, Urbanek J, Crainiceanu C, Pack A: Habitual physical activity patterns in a nationally representative sample of U.S. adults. Transl Behav Med 11(2):332-341, 2021.

Solhjoo S, Punjabi NM, Ivanescu AE, Crainiceanu C, Gaynanova I, Wicken C, Buckenmaier C 3rd, Haigney MC: Methadone destabilizes cardiac repolarization during sleep. Clin Pharmacol Ther 110(4):1066-1074, 2021.

Yu X, Hao L, Crainiceanu C, Leroux A: Occupational determinants of physical activity at work: Evidence from wearable accelerometer in 2005-2006 NHANES. SSM Popul Health 17:100989, 2021.

Benjamin-Neelon SE, Bai J, Ostbye T, Neelon B, Pate RR, Crainiceanu C: Physical activity and adiposity in a racially diverse cohort of US infants. Obesity 28(3):631-637, 2020.

Carass A, Roy S, Gherman A, Reinhold JC, Jesson A, Arbel T, Maier O, Handels H, Ghafoorian M, Platel B, Birenbaum A, Greenspan H, Pham DL, Crainiceanu CM, Calabresi PA, Prince JL, Roncal WRG, Shinohara RT, Oguz I: Evaluating white matter lesion segmentations with refined Sorensen-Dice analysis. Sci Rep 10(1):8242, 2020.

Crainiceanu CM, Crainiceanu A: The upstrap. Biostatistics 21(2):e164-e166, 2020.

Filippatou AG, Lambe J, Sotirchos ES, Fitzgerald KC, Aston A, Murphy OC, Pellegrini N, Fioravante N, Risher H, Ogbuokiri E, Kwakyi O, Toliver B, Davis S, Luciano N, Crainiceanu C, Prince JL, Mowry EM, Calabresi PA, Saidha S: Association of body mass index with longitudinal rates of retinal atrophy in multiple sclerosis. Mult Scler 26(7):843-854, 2020.

Gherman A, Muschelli J, Caffo B, Crainiceanu C: Rxnat: An open-source R package for XNAT-based repositories. Front Neuroinform 14:572068, 2020.

Hannawi Y, Muschelli J, Mulder M, Sharrock M, Storm C, Leithner C, Crainiceanu CM, Stevens RD: Postcardiac arrest neurological prognostication with quantitative regional cerebral densitometry. Resuscitation 154:101-109, 2020.

Heravi AS, Etzkorn LH, Urbanek JK, Crainiceanu CM, Punjabi NM, Ashikaga H, Brown TT, Budoff MJ, D'Souza G, Magnani JW, Palella FJ Jr, Berger RD, Wu KC, Post WS: HIV infection is associated with variability in ventricular repolarization: the Multicenter AIDS Cohort Study (MACS). Circulation 141(3):176-187, 2020.

Punjabi NM, Patil S, Crainiceanu C, Aurora RN: Variability and misclassification of sleep apnea severity based on multi-night testing. Chest 158(1):365-373, 2020.

Smirnova E, Leroux A, Cao Q, Tabacu L, Zipunnikov V, Crainiceanu C, Urbanek JK: The predictive performance of objective measures of physical activity derived from accelerometry data for 5-year all-cause mortality in older adults: National Health and Nutritional Examination Survey 2003-2006. J Gerontol A Biol Sci Med Sci 75(9):1779-1785, 2020.

Sotirchos ES, Gonzalez-Caldito N, Dewey BE, Fitzgerald KC, Glaister J, Filippatou A, Ogbuokiri E, Feldman S, Kwakyi O, Risher H, Crainiceanu C, Pham DL, Van Zijl PC, Mowry EM, Reich DS, Prince JL, Calabresi PA, Saidha S: Effect of disease-modifying therapies on subcortical gray matter atrophy in multiple sclerosis. Mult Scler 26(3):312-321, 2020.

Sotirchos ES, Gonzalez Caldito N, Filippatou A, Fitzgerald KC, Murphy OC, Lambe J, Nguyen J, Button J, Ogbuokiri E, Crainiceanu CM, Prince JL, Calabresi PA, Saidha S, International Multiple Sclerosis Visual System (IMSVISUAL) Consortium: Progressive multiple sclerosis is associated with faster and specific retinal layer atrophy. Ann Neurol 87(6):885-896, 2020.

Tabacu L, Ledbetter M, Leroux A, Crainiceanu C, Smirnova E: Quantifying the varying predictive value of physical activity measures obtained from wearable accelerometers on all-cause mortality over short to medium time horizons in NHANES 2003-2006. Sensors 21(1):E4, 2020.

Ding T, Cohen AD, O'Connor EE, Karim HT, Crainiceanu A, Muschelli J, Lopez O, Klunk WE, Aizenstein HJ, Krafty R, Crainiceanu CM, Tudorascu DL: An improved algorithm of white matter hyperintensity detection in elderly adults. Neuroimage Clin 25:102151, 2019.

Johns JT, Crainiceanu C, Zipunnikov V, Gellar J: Variable-domain functional principal component analysis. J Comp Graph Stat 28(4):993-1006, 2019.

Karas M, Bai J, Straczkiewicz M, Harezlak J, Glynn NW, Harris T, Zipunnikov V, Crainiceanu C, Urbanek JK: Accelerometry data in health research: challenges and opportunities. Stat Biosci 11(2):210-237, 2019.

Kudchadkar SR, Aljohani O, Johns J, Leroux A, Alsafi E, Jastaniah E, Gottschalk A, Shata NJ, Al-Harbi A, Gergen D, Nadkarni A, Crainiceanu C: Day-night activity in hospitalized children after major surgery: an analysis of 2271 hospital days. J Pediatr 209:190-197, 2019.

Leroux A, Di J, Smirnova E, McGuffey EJ, Cao Q, Bayatmokhtari E, Tabacu L, Zipunnikov V, Urbanek JK, Crainiceanu C: Organizing and analyzing the activity data in NHANES. Stat Biosci 11(2):262-287, 2019.

Merikangas KR, Swendsen J, Hickie IB, Cui L, Shou H, Merikangas AK, Zhang J, Lamers F, Crainiceanu C, Volkow ND, Zipunnikov V: Real-time mobile monitoring of the dynamic associations among motor activity, energy, mood, and sleep in adults with bipolar disorder. JAMA Psychiatry 76(2):190-198, 2019.

Muschelli J, Gherman A, Fortin JP, Avants B, Whitcher B, Clayden JD, Caffo BS, Crainiceanu CM: Neuroconductor: an R platform for medical imaging analysis. Biostatistics 20(2):218-239, 2019.

Nguyen J, Rothman A, Gonzalez N, Avornu A, Ogbuokiri E, Balcer LJ, Galetta SL, Frohman EM, Frohman T, Crainiceanu C, Calabresi PA, Saidha S: Macular ganglion cell and inner plexiform layer thickness is more strongly associated eith visual function in multiple sclerosis than Bruch membrane opening-minimum rim width or peripapillary retinal nerve fiber layer thicknesses. J Neuroophthalmol 39(4):444-450, 2019.

Oh J, Ontaneda D, Azevedo C, Klawiter EC, Absinta M, Arnold DL, Bakshi R, Calabresi PA, Crainiceanu C, ..., Shinohara RT, et al: Imaging outcome measures of neuroprotection and repair in MS: A consensus statement from NAIMS. Neurology 92(11):519-533, 2019.

Rothman A, Murphy OC, Fitzgerald KC, Button J, Gordon-Lipkin E, Ratchford JN, Newsome SD, Mowry EM, Sotirchos ES, Syc-Mazurek SB, Nguyen J, Caldito NG, Balcer LJ, Frohman EM, Frohman TC, Reich DS, Crainiceanu C, Saidha S, Calabresi PA: Retinal measurements predict 10-year disability in multiple sclerosis. Ann Clin Transl Neurol 6(2):222-232, 2019.

Sotirchos ES, Fitzgerald KC, Crainiceanu CM: Reporting of R2 statistics for mixed-effects regression models. JAMA Neurol 76(4):507, 2019.

Frank Curriero (go to top of document)

Brooks MM, Salvatore AL, Khanal P, Curriero FC: Mapping cumulative risk in Delaware: approach and implications for health equity. J Public Health Manag Pract 30(3):E112-E123, 2024.

Crane BM, Moored KD, Donahue PT, Corrigan AE, Curriero FC, Shields TM, Desjardins MR, Richards EA, Rosso AL, Lovasi GS, Odden MC, Lopez OL, Biggs ML, Newman AB, Andrews RM, Carlson MC: Associations between toxicity-weighted concentrations and dementia risk: Results from the Cardiovascular Health Cognition Study. Sci Total Environ 945:173706, 2024.

Desjardins MR, Davis BJK, Curriero FC: Evaluating the performance of Bayesian geostatistical prediction with physical barriers in the Chesapeake Bay. Environ Monit Assess 196(3):255, 2024.

Desjardins MR, Kanarek NF, Nelson WG, Bachman J, Curriero FC: Disparities in cancer stage outcomes by catchment areas for a comprehensive cancer center. JAMA Netw Open 7(5):e249474, 2024.

Greene E, Walcott M, Guerra L, Tieu HV, Nandi V, Soler J, Diaz J, Curriero F, Latkin C, Bosompem A, Frye V, NNHIV Study Team: Correlates of concordance between self-reported and lab-confirmed viral load among Black and Latine men who have sex with men (BLMSM) living with HIV in New York City. AIDS Care 36(5):661-671, 2024.

Makhni MC, Curriero FC, Yeung CM, Leung E, Kvit A, Ahmad CS, Lehman RA Jr: The burden of back and neck strains and sprains in professional baseball players. Clin Spine Surg 37(7):305-309, 2024.

Siegel SD, Zhang Y, Lynch SM, Rowland J, Curriero FC: A novel approach for conducting a catchment area analysis of breast cancer by age and stage for a community cancer center. Cancer Epidemiol Biomarkers Prev 33(5):646-653, 2024.

Tao XG, Curriero FC, Mahesh M: Low dose radiation and solid tumors mortality risk. J Occup Environ Med 66(6):e230-e237, 2024.

Tao XG, Curriero FC, Mahesh M: Low-dose radiation risks of lymphohematopoietic cancer mortality in U.S. shipyard workers. Radiat Res 201(6):586-603, 2024.

Aune KT, Zaitchik BF, Curriero FC, Davis MF, Smith GS: Agreement in extreme precipitation exposure assessment is modified by race and social vulnerability. Front Epidemiol 3:1128501, 2023.

Coyle CR, Desjardins MR, Curriero FC, Rudolph J, Astemborski J, Falade-Nwulia O, Kirk GD, Thomas DL, Mehta SH, Genberg BL: Geographic variation in HCV treatment penetration among people who inject drugs in Baltimore, MD. J Viral Hepat 30(10):810-818, 2023.

Desjardins MR, Desravines N, Fader AN, Wethington SL, Curriero FC: Geographic disparities in potential accessibility to gynecologic oncologists in the United States from 2001 to 2020. Obstet Gynecol 142(3):688-697, 2023.

Freelander L, Rickless DS, Anderson C, Curriero F, Rockhill S, Mirsajedin A, Colon CJ, Lusane J, Vigo-Valentin A, Wong D: The impact of COVID-19 on healthcare coverage and access in racial and ethnic minority populations in the United States. Geospat Health 18(2), 2023.

Harfouche MN, Shields T, Curriero FC: Geospatial analysis of firearm injuries in an urban setting: Individual rather than community characteristics affect firearm injury risk. Am J Surg 225(6):1062-1068, 2023.

Hauser M, Kabuya JB, Mantus M, Kamavu LK, Sichivula JL, Matende WM, Fritschi N, Shields T, Curriero F, Kvit A, Chongwe G, Moss WJ, Ritz N, Ippolito MM: Malaria in refugee children resettled to a holoendemic area of sub-Saharan Africa. Clin Infect Dis 76(3):e1104-e1113, 2023.

Makhni MC, Curriero FC, Yeung CM, Kvit A, Ahmad CS, Lehman RA Jr.: Epidemiology of lumbar spine conditions in professional baseball players. Clin Spine Surg 36(7):E283-E287, 2023.

Siegel SD, Brooks MM, Berman JD, Lynch SM, Sims-Mourtada J, Schug ZT, Curriero FC: Neighborhood factors and triple negative breast cancer: The role of cumulative exposure to area-level risk factors. Cancer Med 12(10):11760-11772, 2023.

Brooks MM, Siegel SD, Corrigan AE, Curriero FC: Aggregated spatial intensity as a method for estimating point-level exposures within area-level units: The case of tobacco retailer exposure in census tracts. Spat Spatiotemporal Epidemiol 41:100482, 2022.

Carr JB 2nd, McElheny KD, Corrigan A, Rowe D, Ma K, Curriero FC: The most common type, severity, and expected frequency of injuries vary by defensive position in professional baseball players. Am J Sports Med 50(9):2534-2541, 2022.

Chalmers PN, Mcelheny K, D'Angelo J, Rowe D, Ma K, Curriero FC, Kvit A, Erickson BJ: Effect of weather and game factors on injury rates in professional baseball players. Am J Sports Med 50(4):1130-1136, 2022.

Francis L, Perrin N, Curriero FC, Black MM, Allen JK: Food desert status of family child care homes: relationship to young children's food quality. Int J Environ Res Public Health 19(11):6393, 2022.

Fries B, Davis BJK, Corrigan AE, DePaola A, Curriero FC: Nested spatial and temporal modeling of environmental conditions associated with genetic markers of Vibrio parahaemolyticus in Washington State Pacific oysters. Front Microbiol 13:849336, 2022.

Haeberle HS, Ramkumar PN, Frantz TL, Jones GL, Curriero FC, Corrigan A, Soloff L, Schickendantz MS, Frangiamore SJ: Pectoralis muscle injuries in major and minor league baseball. J Shoulder Elbow Surg 31(8):e363-e368, 2022.

Kvik A, Rose J, Curriero FC, Crifasi CK, Pollack CE: The association between vacant housing demolition and safety and health in Baltimore, MD. Prev Med 164:107292, 2022.

Makhni MC, Curriero FC, Yeung CM, Leung E, Kvit A, Mroz T, Ahmad CS, Lehman RA Jr: Epidemiology of spine-related neurologic injuries in professional baseball players. Spine 47(6):E265-E271, 2022.

Shannon KL, Shields T, Ahmed S, Rahman H, Prue CS, Khyang J, Ram M, Haq MZ, Akter J, Alam MS, Glass GE, Nyunt MM, Sack DA, Sullivan DJ, Khan WA, Curriero FC: Temporal and spatial differences between symptomatic and asymptomatic malaria infections in the Chittagong Hill Districts, Bangladesh. Am J Trop Med Hyg 107(6):1210-1217, 2022.

Siegel SD, Brooks M, Bourke J, Curriero FC: Reducing exposure to tobacco retailers with residential zoning policy: insights from a geospatial analysis of Wilmington, Delaware. Cities Health 6(4):752-764, 2022.

Siegel SD, Brooks MM, Lynch SM, Sims-Mourtada J, Schug ZT, Curriero FC: Racial disparities in triple negative breast cancer: toward a causal architecture approach. Breast Cancer Res 24(1):37, 2022.

Siegel SD, Brooks MM, Sims-Mourtada J, Schug ZT, Leonard DJ, Petrelli N, Curriero FC: A population health assessment in a community cancer center catchment area: triple-negative breast cancer, alcohol use, and obesity in New Castle County, Delaware. Cancer Epidemiol Biomarkers Prev 31(1):108-116, 2022.

Tao XG, Curriero FC, Chee EM, Mahesh M: Updated standardized mortality ratio evaluation of disease risks of shipyard workers exposed to low dose ionizing radiation. J Occup Environ Med 64(4):e224-e230, 2022.

Brooks MM, Siegel SD, Curriero FC: Characterizing the spatial relationship between smoking status and tobacco retail exposure: implications for policy development and evaluation. Health Place 68:102530, 2021.

Conway JJ, Curriero FC, Camp CL, Toresdahl BG, Coleman S, Kinderknecht JJ: Time out of play due to illness in major and minor league baseball. Clin J Sport Med 31(3):e137-e143, 2021.

Curriero FC, Wychgram C, Rebman AW, Corrigan AE, Kvit A, Shields T, Aucott JN: The Lyme and Tickborne Disease Dashboard: A map-based resource to promote public health awareness and research collaboration. PLoS One 16(12):e0260122, 2021.

Davis BJK, Corrigan AE, Sun Z, Atherly E, DePaola A, Curriero FC: A case-control analysis of traceback investigations for Vibrio parahaemolyticus infections (vibriosis) and pre-harvest environmental conditions in Washington State, 2013-2018. Sci Total Environ 752:141650, 2021.

Fakunle DO, Curriero FC, Leaf PJ, Furr-Holden DM, Thorpe RJ: Black, white, or green? The effects of racial composition and socioeconomic status on neighborhood-level tobacco outlet density. Ethn Health 26(7):1012-1027, 2021.

Fletcher KM, Espey J, Grossman MK, Sharpe JD, Curriero FC, Wilt GE, Sunshine G, Moreland A, Howard-Williams M, Ramos JG, Giuffrida D, Garcia MC, Hartnett WM, Foster S: Social vulnerability and county stay-at-home behavior during COVID-19 stay-at-home orders, United States, April 7-April 20, 2020. Ann Epidemiol 64:76-82, 2021.

Frantz T, Ramkumar PN, Frangiamore S, Jones G, Soloff L, Kvit A, Curriero FC, Schickendantz M: Epidemiology of acromioclavicular joint injuries in professional baseball: analysis from the Major League Baseball Health and Injury Tracking System. J Shoulder Elbow Surg 30(1):127-133, 2021.

Green G, Pollack Porter KM, Kvit A, Conte S, D'Angelo J, Valadka A, Curriero FC: Examining batting performance after a sports-related concussion among Major League Baseball position players. Am J Sports Med 49(3):790-797, 2021.

Green GA, Porter KP, Conte S, Valadka AB, Soloff L, Curriero FC: Preventing concussions from foul tips and backswings in professional baseball: catchers' perceptions of and experiences with conventional and hockey-style masks. Clin J Sport Med 31(1):e1-e7, 2021.

Guemes A, Ray S, Aboumerhi K, Desjardins MR, Kvit A, Corrigan AE, Fries B, Shields T, Stevens RD, Curriero FC, Etienne-Cummings R: A syndromic surveillance tool to detect anomalous clusters of COVID-19 symptoms in the United States. Sci Rep 11(1):4660, 2021.

Siegel SD, Brooks M, Curriero FC: Operationalizing the population health framework: clinical characteristics, social context, and the built environment. Popul Health Manag 24(4):454-462, 2021.

Siegel SD, Brooks M, Ragozine-Bush HE, Schnoll RA, Curriero FC: The co-occurrence of smoking and alcohol use disorder in a hospital-based population: Applying a multimorbidity framework using geographic information system methods. Addict Behav 118:106883, 2021.

Bhondoekhan FRP, Searle KM, Hamapumbu H, Lubinda M, Matoba J, Musonda M, Katowa B, Shields TM, Kobayashi T, Norris DE, Curriero FC, Stevenson JC, Thuma PE, Moss WJ, Southern and Central Africa International Centers of Excellence for Malaria Research: Improving the efficiency of reactive case detection for malaria elimination in southern Zambia: a cross-sectional study. Malar J 19(1):175, 2020.

Hultman K, Szukics PF, Grzenda A, Curriero FC, Cohen SB: Gastrocnemius injuries in professional baseball players: an epidemiological study. Am J Sports Med 48(10):2489-2498, 2020.

Johnson KA, Jones-Smith J, Curriero FC, Cheskin LJ, Benjamin-Neelon SE, Perin J, Caicedo MR, Thornton RLJ: Low-income black and Hispanic children's neighborhood food environments and weight trajectories in early childhood. Acad Pediatr 20(6):784-792, 2020.

Rubenstein WJ, Allahabadi S, Curriero F, Feeley BT, Lansdown DA: Fracture epidemiology in professional baseball from 2011 to 2017. Orthop J Sports Med 8(8):2325967120943161, 2020.

Spaur M, Davis BJK, Kivitz S, DePaola A, Bowers JC, Curriero FC, Nachman KE: A systematic review of post-harvest interventions for Vibrio parahaemolyticus in raw oysters. Sci Total Environ 745:140795, 2020.

Stojan G, Kvit A, Curriero FC, Petri M: A spatiotemporal analysis of organ-specific lupus flares in relation to atmospheric variables and fine particulate matter pollution. Arthritis Rheumatol 72(7):1134-1142, 2020.

Tieu HV, Koblin BA, Latkin C, Curriero FC, Greene ER, Rundle A, Frye V: Neighborhood and network characteristics and the HIV care continuum among gay, bisexual, and other men who have sex with men. J Urban Health 97(5):592-608, 2020.

Berman JD, Jin L, Bell ML, Curriero FC: Developing a geostatistical simulation method to inform the quantity and placement of new monitors for a follow-up air sampling campaign. J Expo Sci Environ Epidemiol 29(2):248-257, 2019.

Davis BJK, Curriero FC: Development and evaluation of geostatistical methods for non-Euclidean-based spatial covariance matrices. Math Geosci 51(6):767-791, 2019.

Davis BJK, Jacobs JM, Zaitchik B, DePaola A, Curriero FC: Vibrio parahaemolyticus in the Chesapeake Bay: Operational in situ prediction and forecast models can benefit from inclusion of lagged water quality measurements. Appl Environ Microbiol 85(17):e01007-19, 2019.

DePriest K, Butz A, Curriero FC, Perrin N, Gross D: Associations among neighborhood greenspace, neighborhood violence, and children's asthma control in an urban city. Ann Allergy Asthma Immunol 123(6):608-610, 2019.

DePriest KN, Shields TM, Curriero FC: Returning to our roots: the use of geospatial data for nurse-led community research. Res Nurs Health 42(6):467-475, 2019.

Esquivel A, Freehill MT, Curriero FC, Rand KL, Conte S, Tedeschi T, Lemos SE: Analysis of non-game injuries in major league baseball. Orthop J Sports Med 7(12):2325967119888499, 2019.

Fakunle DO, Thorpe RJ Jr, Furr-Holden CDM, Curriero FC, Leaf PJ: Does tobacco outlet inequality extend to high-white mid-Atlantic jurisdictions? A study of socioeconomic status and density. J Racial Ethn Health Disparities 6(2):409-418, 2019.

Feingold BJ, Augustino KL, Curriero FC, Udani PC, Ramsey KM: Evaluation of methicillin-resistant Staphylococcus aureus carriage and high livestock production areas in North Carolina through active case finding at a tertiary care hospital. Int J Environ Res Public Health 16(18):E3418, 2019.

Flynn A, Davis BJK, Atherly E, Olson G, Bowers JC, DePaola A, Curriero FC: Associations of environmental conditions and Vibrio parahaemolyticus genetic markers in Washington State Pacific oysters. Front Microbiol 10:2797, 2019.

Hansel NN, Romero KM, Pollard SL, Bose S, Psoter KJ, J Underhill L, Johnson C, Williams D, Curriero FC, Breysse P, Koehler K, Checkley W, GASP Study Investigators: Ambient air pollution and variation in multiple domains of asthma morbidity among Peruvian children. Ann Am Thorac Soc 16(3):348-355, 2019.

Jarman MP, Pollack Porter K, Curriero FC, Castillo RC: Factors mediating demographic determinants of injury mortality. Ann Epidemiol 34:58-64, 2019.

Klassen AC, Hsieh S, Pankiewicz A, Kabbe A, Hayes J, Curriero F: The association of neighborhood-level social class and tobacco consumption with adverse lung cancer characteristics in Maryland. Tob Induc Dis 17:06, 2019.

Kvit A, Davis B, Jacobs J, Curriero FC: Adjusted, non-Euclidean cluster detection of Vibrio parahaemolyticus in the Chesapeake Bay, USA. Geospat Health 14(2):10.4081, 2019.

Majd E, McCormack M, Davis M, Curriero F, Berman J, Connolly F, Leaf P, Rule A, Green T, Clemons-Erby D, Gummerson C, Koehler K: Indoor air quality in inner-city schools and its associations with building characteristics and environmental factors. Environ Res 170:83-91, 2019.

Nesoff ED, Milam AJ, Pollack KM, Curriero FC, Bowie JV, Knowlton AR, Gielen AC, Furr-Holden DM: Neighbourhood alcohol environment and injury risk: a spatial analysis of pedestrian injury in Baltimore City. Inj Prev 25(5):350-356, 2019.

Sapkota A, Murtugudde R, Curriero FC, Upperman CR, Ziska L, Jiang C: Associations between alteration in plant phenology and hay fever prevalence among US adults: Implication for changing climate. PLoS One 14(3):e0212010, 2019.

Trangenstein PJ, Curriero FC, Jennings JM, Webster D, Latkin C, Eck RH, Jernigan DH: Methods for evaluating the association between alcohol outlet density and violent crime. Alcohol Clin Exp Res 43(8):1714-1726, 2019.

Abhirup Datta (go to top of document)

Gilbert B, Datta A: Visibility graph-based covariance functions for scalable spatial analysis in non-convex partially Euclidean domains. Biometrics 80(3):ujae089, 2024.

Rosenblum M, Chin ET, Ogburn EL, Nishimura A, Westreich D, Datta A, et al: Misuse of statistical method results in highly biased interpretation of forensic evidence in Guyll et al. Law Prob Risk 23(1):mgad010, 2024.

Tang B, Pramanik S, Zhao Y, Caffo B, Datta A: Direct Bayesian linear regression for distribution-valued covariates. Electron J Stat 18(2): 3327-3375, 2024.

Wang G, Datta A, Lindquist MA: Improved fMRI-based pain prediction using Bayesian group-wise functional registration. Biostatistics 25(3):885-903, 2024.

Dey D, Datta A, Banerjee S: Modeling multivariate spatial dependencies using graphical models. N Engl J Stat Data Sci 1(2):283-295, 2023.

Fiksel J, Gilbert B, Wilson E, Kalter H, Kante A, Akum A, Blau D, Bassat Q, Macicame I, Samo Gudo E, Black R, Zeger S, Amouzou A, Datta A: Correcting for verbal autopsy misclassification bias in cause-specific mortality estimates. Am J Trop Med Hyg 108(5_Suppl):66-77, 2023.

Gilbert B, Fiksel J, Wilson E, Kalter H, Kante A, Akum A, Blau D, Bassat Q, Macicame I, Samo Gudo E, Black R, Zeger S, Amouzou A, Datta A: Multi-cause calibration of verbal autopsy-based cause-specific mortality estimates of children and neonates in Mozambique. Am J Trop Med Hyg 108(5_Suppl):78-89, 2023.

Heffernan C, Peng R, Gentner DR, Koehler K, Datta A: A dynamic spatial filtering approach to mitigate underestimation bias in field calibrated low-cost sensor air pollution data. Ann Appl Stat 17(4): 3056-3087, 2023.

Koehler K, Wilks M, Green T, Rule AM, Zamora ML, Buehler C, Datta A, Gentner DR, Putcha N, Hansel NN, Kirk GD, Raju S, McCormack M: Evaluation of calibration approaches for indoor deployments of PurpleAir monitors. Atmos Environ 310:119944, 2023.

Lin JJY, Buehler C, Datta A, Gentner DR, Koehler K, Zamora ML: Laboratory and field evaluation of a low-cost methane sensor and key environmental factors for sensor calibration. Environ Sci Atmos 3(4):683-694, 2023.

Macicame I, Kante AM, Wilson E, Gilbert B, Koffi A, Nhachungue S, Monjane C, Duce P, Adriano A, Chicumbe S, Jani I, Kalter HD, Datta A, Zeger S, Black RE, Gudo ES, Amouzou A, COMSA-Mozambique Study Team: Countrywide mortality surveillance for action in Mozambique: results from a national sample-based vital statistics system for mortality and cause of death. Am J Trop Med Hyg 108(5_Suppl):5-16, 2023.

Saha A, Basu S, Datta A: Random forests for spatially dependent data. JASA 118(541):665-683, 2023.

Weber LM, Saha A, Datta A, Hansen KD, Hicks SC: nnSVG for the scalable identification of spatially variable genes using nearest-neighbor Gaussian processes. Nat Commun 14(1):4059, 2023.

Wikle CK, Datta A, Vyasa Hari B, Boone EL, Sahoo I, Kavila I, Castruccio S, Simmons SJ, Burr WS, Chang W: An illustration of model agnostic explainability methods applied to environmental data. Environmetrics 34(1):e2772, 2023.

Zamora ML, Buehler C, Datta A, Gentner DR, Koehler K: Identifying optimal co-location calibration periods for low-cost sensors. Atmos Meas Tech 16(1):169-179, 2023.

Datta A: Nearest-neighbor sparse Cholesky matrices in spatial statistics. WIREs Comp Stat 14(5):e1574, 2022.

Dey D, Datta A, Banerjee S: Graphical Gaussian process models for highly multivariate spatial data. Biometrika 109(4):993-1014, 2022.

Fiksel J, Datta A, Amouzou A, Zeger S: Generalized Bayes quantification learning under dataset shift. JASA 117(540):2163-2181, 2022.

Fiksel J, Zeger S, Datta A: A transformation-free linear regression for compositional outcomes and predictors. Biometrics 78(3):974-987, 2022.

Finley AO, Datta A, Banerjee S: spNNGP R package for nearest neighbor Gaussian process models. J Stat Softw 103(5):1-40, 2022.

Gao L, Datta A, Banerjee S: Hierarchical multivariate directed acyclic graph autoregressive models for spatial diseases mapping. Stat Med 41(16):3057-3075, 2022.

Patton A, Datta A, Zamora ML, Buehler C, Xiong F, Gentner DR, Koehler K: Non-linear probabilistic calibration of low-cost environmental air pollution sensor networks for neighborhood level spatiotemporal exposure assessment. J Expo Sci Environ Epidemiol 32(6):908-916, 2022.

Saha A, Datta A, Banerjee S: Scalable predictions for spatial probit linear mixed models using nearest neighbor Gaussian processes. J Data Sci 20(4): 533-544, 2022.

Seal S, Datta A, Basu S: Efficient estimation of SNP heritability using Gaussian predictive process in large scale cohort studies. PLoS Genet 8(4):e1010151, 2022.

Wang G, Datta A, Lindquist MA: Bayesian functional registration of fMRI activation maps. Ann Appl Stat 16 (3), 1676-1699, 2022.

Zamora ML, Buehler C, Lei H, Datta A, Xiong F, Gentner DR, Koehler K: Evaluating the performance of using low-cost sensors to calibrate for cross-sensitivities in a multipollutant network. ACS ES&T Engineering 2(5):780-793, 2022.

Datta A, Fiksel J, Amouzou A, Zeger SL: Regularized Bayesian transfer learning for population-level etiological distributions. Biostatistics 22(4):836-857, 2021.

Datta A, Pita A, Rao A, Sithole B, Mnisi Z, Baral S: Size estimation of key populations in the HIV epidemic in eSwatini using incomplete and misaligned capture-recapture data. Ann Appl Stat 14(3):1207-1241, 2020.

Datta A, Saha A, Zamora ML, Buehler C, Hao L, Xiong F, Gentner DR, Koehler K: Statistical field calibration of a low-cost PM 2.5 monitoring network in Baltimore. Atmos Environ 242:117761, 2020.

Datta A, Banerjee S, Hodges JS, Gao L: Spatial disease mapping using Directed Acyclic Graph Auto-Regressive (DAGAR) models. Bayesian Anal 14(4):1221-1244, 2019.

Datta A, Lin W, Rao A, Diouf D, Kouame A, Edwards JK, Bao L, Louis TA, Baral S: Bayesian estimation of MSM population size in Cote d'Ivoire. Stat Public Policy 6(1):1-13, 2019.

Datta A, Zou H, Banerjee S: Bayesian high-dimensional regression for change point analysis. Statistics and Its Interface 12(2):253-264, 2019.

Finley AO, Datta A, Cook BD, Morton DC, Andersen HE, Banerjee S: Efficient algorithms for Bayesian nearest neighbor Gaussian processes. J Comp Graph Stat 28(2):401-414, 2019.

Heaton MJ, Datta A, Finley AO, Furrer R, Guinness J, Guhaniyogi R, Gerber F, Gramacy RB, Hammerling D, Katzfuss M, Lindgren F, Nychka DW, Sun F, Zammit-Mangion: A case study competition among methods for analyzing large spatial data. J Agric Biol Environ Stat 24(3):398-425, 2019.

Marie Diener-West (go to top of document)

Donahue SP, Chandler DL, Wu R, Marsh JD, Law C, Areaux RG Jr, Ghasia FF, Li Z, Kraker RT, Cotter SA, Holmes JM, Pediatric Eye Disease Investigator Group (includes Diener-West M): Eight-year outcomes of bilateral lateral rectus recessions versus unilateral recession-resection in childhood basic-type intermittent exotropia. Ophthalmology 131(1):98-106, 2024.

Wang S, Repka MX, Sutherland DR, Hatt SR, Traboulsi EI, Lambert SR, Melia BM, Kraker RT, Holmes JM, Cotter SA, Pediatric Eye Disease Investigator Group (includes Diener-West M): Complications, visual acuity, and refractive error 3 years after secondary intraocular lens implantation for pediatric aphakia. Ophthalmology 131(10):1196-1206, 2024.

Writing Committee for the Pediatric Eye Disease Investigator Group, Pediatric Eye Disease Investigator Group (includes Diener-West M), Chen AM, Erzurum SA, et al: Refractive error change and overminus lens therapy for childhood intermittent exotropia. JAMA Ophthalmol 142(5):417-428, 2024.

Bothun ED, Repka MX, Kraker RT, Wu R, Leske DA, Hatt SR, Li Z, Freedman SF, Astle WF, Cotter SA, Holmes JM, Pediatric Eye Disease Investigator Group (includes Diener-West M): Incidence of glaucoma-related adverse events in the first 5 years after pediatric lensectomy. JAMA Ophthalmol 141(4):324-331, 2023.

Jenewein EC, Cotter S, Roberts T, Kulp M, Mitchell GL, Jones-Jordan LA, Chen AM, Hopkins K, Huang K, Amster D, Fecho G, Tyler J, Meiyeppen S, Scheiman M, Convergence Insufficiency Treatment Trial-Attention and Reading Trial (CITT-ART) Investigator Group (includes Diener-West M): Vergence/accommodative therapy for symptomatic convergence insufficiency in children: time course of improvements in convergence function. Ophthalmic Physiol Opt 43(1):105-115, 2023.

Ng JH, Yang W, Dember LM, HFM Study Group (includes Diener-West M): Performance characteristics of candidate criteria for hemodialysis arteriovenous fistula maturation. Clin J Am Soc Nephrol 18(10):1321-1332, 2023.

Periyakoil D, Periyakoil P, Tee CA, Spanos CJ, Diener-West M, Tee M, Prata N: Are there differences between the stress responses of Philippine men and women to the COVID-19 pandemic? Int J Environ Res Public Health 20(3):2326, 2023.

Repka MX, Weise KK, Chandler DL, Wu R, Melia BM, Manny RE, Kehler LAF, Jordan CO, Raghuram A, Summers AI, Lee KA, Petersen DB, Erzurum SA, Pang Y, Lenhart PD, Ticho BH, Beck RW, Kraker RT, Holmes JM, Cotter SA, Pediatric Eye Disease Investigator Group (includes Diener-West M): Low-dose 0.01% atropine eye drops vs placebo for myopia control: a randomized clinical trial. JAMA Ophthalmol 141(8):756-765, 2023.

Yen KG, Repka MX, Sutherland DR, Haider KM, Hatt SR, Kraker RT, Galvin JA, Li Z, Cotter SA, Holmes JM, Pediatric Eye Disease Investigator Group (includes Diener-West M): Complications occurring through 5 years following primary intraocular lens implantation for pediatric cataract. JAMA Ophthalmol 141(8):705-714, 2023.

Coffman VR, Hall DJ, Pisanic N, Wiesner-Friedman C, Rogers S, Rule A, McCormack M, Diener-West M, Davis MF, Heaney CD: Assessing residential exposure to microbes from industrial hog operations in rural North Carolina: methods and lessons learned. Prog Community Health Partnersh 16(1):61-72, 2022.

Freedman SF, Hercinovic A, Wallace DK, Kraker RT, Li Z, Bhatt AR, Boente CS, Crouch ER, Hubbard GB, Rogers DL, VanderVeen D, Yang MB, Cheung NL, Cotter SA, Holmes JM, Pediatric Eye Disease Investigator Group (includes Diener-West M): Low- and very low-dose bevacizumab for retinopathy of prematurity: reactivations, additional treatments, and 12-month outcomes. Ophthalmology 129(10):1120-1128, 2022.

Kulp MT, Sinnott LT, Cotter SA, Borsting E, Toole AJ, Chen AM, Jenewein EC, Morrison AM, Plaumann MD, Jones-Jordan L, Mitchell GL, Tea YC, Scheiman MM, Convergence Insufficiency Treatment Trial (CITT) Investigator Group, Convergence Insufficiency Treatment Trial - Attention, Reading Trial (CITT-ART) Investigator Group (includes Diener-West M): Does coexisting accommodative dysfunction impact clinical convergence measures, symptoms and treatment success for symptomatic convergence insufficiency in children? Ophthalmic Physiol Opt 42(1):59-70, 2022.

Li Y, He Y, Falzon I, Fairbourn B, Tingey S, Imrey PB, Radeva MK, Beck GJ, Gassman JJ, Roy-Chaudhury P, Berceli SA, Cheung AK, Shiu YT, Hemodialysis Fistula Maturation Study (includes Diener-West M): Dynamic remodeling of human arteriovenous fistula wall obtained from magnetic resonance imaging during the first 6 months after creation. Kidney Int Rep 7(8):1905-1909, 2022.

Pineles SL, Henderson RJ, Repka MX, ..., Pediatric Eye Disease Investigator Group (includes Diener-West M): The Pediatric Optic Neuritis Prospective Outcomes Study: Two-year results. Ophthalmology 129(8):856-864, 2022.

Repka MX, Dean TW, Kraker RT, ..., Pediatric Eye Disease Investigator Group (includes Diener-West M): Visual acuity and ophthalmic outcomes 5 years after cataract surgery among children younger than 13 years. JAMA Ophthalmol 140(3):269-276, 2022.

Zia N, Bachani AM, Kajungu D, Galiwango E, Loeb M, Diener-West M, Wegener S, Pariyo G, Hyder AA: Understanding child disability: Factors associated with child disability at the Iganga-Mayuge Health and Demographic Surveillance Site in Uganda. PLoS One 17(4):e0267182, 2022.

Chen AM, Roberts TL, Cotter SA, Kulp MT, Sinnott LT, Borsting EJ, Tea YC, Jones-Jordan LA, Hertle R, Mitchell GL, Eugene Arnold L, Chase C, Scheiman MM, Convergence Insufficiency Treatment Trial - Attention and Reading Trial (CITT-ART) Investigator Group (includes Diener-West M): Effectiveness of vergence/accommodative therapy for accommodative dysfunction in children with convergence insufficiency. Ophthalmic Physiol Opt 41(1):21-32, 2021.

Coffman VR, Hall DJ, Pisanic N, Love DC, Nadimpalli M, McCormack M, Diener-West M, Davis MF, Heaney CD: Self-reported work activities, eye, nose, and throat symptoms, and respiratory health outcomes among an industrial hog operation worker cohort, North Carolina, USA. Am J Ind Med 64(5):403-413, 2021.

Coffman VR, Hall DJ, Pisanic N, Nadimpalli M, McCormack M, Diener-West M, Davis MF, Heaney CD: Personal protective equipment use during industrial hog operation work activities and acute lung function changes in a prospective worker cohort, North Carolina 2014-2015. Am J Ind Med 64(8):688-698, 2021.

Kraker RT, Wallace DK, Beck RW, Saunders CT, Lorenzi E, Melia BM, Li Z, Pediatric Eye Disease Investigator Group (includes Diener-West M): Choice of dose level for a randomized clinical trial of low-dose bevacizumab vs laser for type 1 retinopathy of prematurity. JAMA Ophthalmol 139(10):1143-1144, 2021.

Oh J, Chen M, Cybulsky K, Suthiphosuwan S, Seyman E, Dewey B, Diener-West M, van Zijl P, Prince J, Reich DS, Calabresi PA: Five-year longitudinal changes in quantitative spinal cord MRI in multiple sclerosis. Mult Scler 27(4):549-558, 2021.

Writing Committee for the Pediatric Eye Disease Investigator Group (PEDIG) (includes Diener-West M), Bothun ED, Repka MX, Dean TW, Gray ME, Lenhart PD, Li Z, Morrison DG, Wallace DK, Kraker RT, Cotter SA, Holmes JM: Visual outcomes and complications after lensectomy for traumatic cataract in children. JAMA Ophthalmol 139(6):647-653, 2021.

Zia N, Bachani AM, Kajungu D, Galiwango E, Loeb M, Diener-West M, Wegener S, Pariyo G, Hyder AA: Measuring child functioning: Assessing correlation and agreement between caregiver and child responses at the Iganga-Mayuge health and demographic surveillance site in Uganda. Disabil Health J 14(2):101022, 2021.

McAdams-DeMarco MA, Chu NM, Steckel M, Kunwar S, Gonzalez Fernandez M, Carlson MC, Fine DM, Appel LJ, Diener-West M, Segev DL: Interventions Made to Preserve Cognitive Function Trial (IMPCT) study protocol: a multi-dialysis center 2x2 factorial randomized controlled trial of intradialytic cognitive and exercise training to preserve cognitive function. BMC Nephrol 21(1):383, 2020.

Zia N, Loeb M, Kajungu D, Galiwango E, Diener-West M, Wegener S, Pariyo G, Hyder AA, Bachani AM: Adaptation and validation of UNICEF/Washington group child functioning module at the Iganga-Mayuge health and demographic surveillance site in Uganda. BMC Public Health 20(1):1334, 2020.

Dezube R, Jennings MT, Rykiel M, Diener-West M, Boyle MP, Chmiel JF, Dasenbrook EC: Eradication of persistent methicillin-resistant Staphylococcus aureus infection in cystic fibrosis. J Cyst Fibros 18(3):357-363, 2019.

Kubiak RW, Zelnick LR, Hoofnagle AN, Alpers CE, Terry CM, Shiu YT, Cheung AK, de Boer IH, Robinson-Cohen C, Allon M, Dember LM, Feldman HI, Himmelfarb J, Huber TS, Roy-Chaudhury P, Vazquez MA, Kusek JW, Beck GJ, Imrey PB, Kestenbaum B, Hemodialysis Fistula Maturation Study Group (includes Diener-West M): Mineral metabolism disturbances and arteriovenous fistula maturation. Eur J Vasc Endovasc Surg 57(5):719-728, 2019.

Nelson CS, Vera Cruz D, Su M, Xie G, Vandergrift N, Pass RF, Forman M, Diener-West M, Koelle K, Arav-Boger R, Permar SR: Intrahost dynamics of human cytomegalovirus variants acquired by seronegative glycoprotein B vaccinees. J Virol 93(5):e01695-18, 2019.

Resnick BA, Morlock L, Diener-West M, Stuart EA, Spencer M, Sharfstein JM: PH WINS and the future of public health education. J Public Health Manag Pract 25(Suppl 2):S10-S12, 2019.

Varadaraj V, Ranjit A, Nwadiuko J, Canner J, Diener-West M, Schneider EB, Thyagarajan SP, Shrestha R, Nagarajan N: Towards diaspora-driven research capacity strengthening in low- and middle-income countries: results from India and Nepal. Int Health 11(3):221-228, 2019.

Lacey Etzkorn (go to top of document)

Davoudi A, Urbanek JK, Etzkorn L, Parikh R, Soliman EZ, Wanigatunga AA, Gabriel KP, Coresh J, Schrack JA, Chen LY: Validation of a Zio XT Patch accelerometer for the objective assessment of physical activity in the Atherosclerosis Risk in Communities (ARIC) Study. Sensors 24(3):761, 2024.

Etzkorn LH, Heravi AS, Knuth ND, Wu KC, Post WS, Urbanek JK, Crainiceanu CM: Classification of free-living body posture with ECG patch accelerometers: application to the Multicenter AIDS Cohort Study. Stat Biosci 16:25-44, 2024.

Etzkorn LH, Le Coent Q, van den Boogaard M, Rondeau V, Colantuoni E: A joint frailty model for recurrent and competing terminal events: application to delirium in the ICU. Stat Med 43(12):2389-2402, 2024.

Marino FR, Wu HT, Etzkorn L, Rooney MR, Soliman EZ, Deal JA, Crainiceanu C, Spira AP, Wanigatunga AA, Schrack JA, Chen LY: Associations of physical activity and heart rate variability from a two-week ECG monitor with cognitive function and dementia: The ARIC Neurocognitive Study. Sensors 24(13):4060, 2024.

Dougherty RJ, Liu F, Etzkorn L, Wanigatunga AA, Walter PJ, Knuth ND, Schrack JA, Ferrucci L: Validation of accelerometer placement to capture energy expenditure using doubly labeled water. Appl Physiol Nutr Metab 47(10):1045-1049, 2022.

Etzkorn LH, Liu F, Urbanek JK, Heravi AS, Magnani JW, Plankey MW, Margolich JB, Witt MD, Palella FJ Jr, Haberlen SA, Wu KC, Post WS, Schrack JA, Crainiceanu CM: Patterns of objectively measured physical activity differ between men living with and without HIV. AIDS 36(11):1553-1562, 2022.

Wesner E, Etzkorn L, Bakre S, Chen J, Davis A, Zhang Y, Yasar S, Rao A, Luciano M, Wang J, Moghekar A: The clinical utility of the MOCA in iNPH assessment. Front Neurol 13:887669, 2022.

Heravi AS, Etzkorn LH, Urbanek JK, Crainiceanu CM, Punjabi NM, Ashikaga H, Brown TT, Budoff MJ, D'Souza G, Magnani JW, Palella FJ Jr, Berger RD, Wu KC, Post WS: HIV infection is associated with variability in ventricular repolarization: the Multicenter AIDS Cohort Study (MACS). Circulation 141(3):176-187, 2020.

Constantine Frangakis (go to top of document)

Chen JS, Hutton HE, Tran HV, Quang VN, Nguyen MX, Sripaipan T, Dowdy DW, Latkin CA, Chander G, Frangakis C, Go VF: Efficacy of two evidence-based alcohol consumption interventions on positive, negative, and neutral days among hazardous alcohol users living with HIV in Vietnam. AIDS Behav 28(2):421-428, 2024.

Chen JS, Chander G, Tran HV, Sripaipan T, Hoa NTK, Miller WC, Latkin CA, Dowdy DW, Hutton HE, Frangakis C, Go VF: Phosphatidylethanol and self-reported alcohol consumption among people living with HIV in Thai Nguyen, Vietnam. Alcohol 47(6):1100-1108, 2023.

Nguyen MX, Reyes HL, Pence BW, Muessig KE, Hutton H, Latkin CA, Dowdy D, Chander G, Lancaster KE, Frangakis C, Sripaipan T, Tran HV, Go VF: Alcohol use as a mediator of the effect of two alcohol reduction interventions on mental health symptoms of ART clients in Vietnam. AIDS Care 35(11):1691-1699, 2023.

Nguyen MX, Zimmer C, Latkin CA, Lancaster KE, Dowdy DW, Hutton H, Chander G, Frangakis C, Gaynes BN, Sripaipan T, Tran HV, Go VF: Validation of the combined Patient Health Questionnaire Anxiety and Depression Scale among people with HIV in Vietnam. Int J STD AIDS 34(12):832-840, 2023.

Smith MK, Latkin CA, Hutton HE, Chander G, Enns EA, Ha TV, Frangakis C, Sripaipan T, Go VF: Longitudinal trajectories of alcohol use in Vietnamese adults with hazardous alcohol use and HIV. AIDS Behav 27(6):1972-1980, 2023.

Tao Y, Afthinos A, Gallegos J, Herrmann O, Frangakis C, Tsapkini K: Transcranial direct current stimulation to the left angular gyrus improves verbal learning in amnestic mild cognitive impairment: a case report. Brain Stimul 16(5):1458-1460, 2023.

Wang Z, Ficek BN, Webster KT, Herrmann O, Frangakis CE, Desmond JE, Onyike CU, Caffo B, Hillis AE, Tsapkini K: Specificity in generalization effects of transcranial direct current stimulation over the left inferior frontal gyrus in primary progressive aphasia. Neuromodulation 26(4):850-860, 2023.

Alexandris AS, Wang Y, Frangakis CE, Lee Y, Ryu J, Alam Z, Koliatsos VE: Long-term changes in axon calibers after injury: observations on the mouse corticospinal tract. Int J Mol Sci 23(13):7391, 2022.

Frangakis C, Kohler B, Georgiades CS: CT-guided celiac ganglion block for neurogenic gastrointestinal dysmotility. J Vasc Interv Radiol 33(12):1492-1499, 2022.

Herrmann O, Ficek B, Webster KT, Frangakis C, Spira AP, Tsapkini K: Sleep as a predictor of tDCS and language therapy outcomes. Sleep 45(3):zsab275, 2022.

Nguyen MX, Hershow RB, Blackburn NA, Bui QX, Latkin CA, Hutton H, Chander G, Dowdy D, Lancaster KE, Frangakis C, Sripaipan T, Tran HV, Go VF: "I refused to drink but they still forced me": A mixed-methods approach to understanding the pathways to reduce alcohol use among Vietnamese people with HIV. Soc Sci Med 301:114902, 2022.

Nguyen MX, Reyes HL, Pence BW, Muessig KE, Hutton HE, Latkin CA, Dowdy D, Chander G, Lancaster KE, Frangakis C, Sripaipan T, Tran HV, Go VF: Effects of two alcohol reduction interventions on depression and anxiety symptoms of ART clients in Vietnam. AIDS Behav 26(6):1829-1840, 2022.

Blackburn NA, Go VF, Bui Q, Hutton H, Tampi RP, Sripaipan T, Ha TV, Latkin CA, Golden S, Golin C, Chander G, Frangakis C, Gottfredson N, Dowdy DW: The cost-effectiveness of adapting and implementing a brief intervention to target frequent alcohol use among persons with HIV in Vietnam. AIDS Behav 25(7):2108-2119, 2021.

Frangakis C, Sohn JH, Bas A, Chapiro J, Schernthaner RE, Lin M, Hamilton JP, Pawlik TM, Hong K, Duran R: Longitudinal analysis of the effect of repeated transarterial chemoembolization for liver cancer on portal venous pressure. Front Oncol 11:639235, 2021.

Hershow RB, Reyes HLMN, Ha TV, Chander G, Mai NVT, Sripaipan T, Dowdy DW, Latkin C, Hutton HE, Pettifor A, Maman S, Frangakis C, Go VF: Evaluating the effects of two alcohol reduction counseling interventions on intimate partner violence perpetration: secondary analysis of a three-arm randomized controlled trial among Vietnamese men with HIV. Addiction 116(10):2712-2723, 2021.

Kolarich A, Frangakis C, Yarchoan M, Hong K, Georgiades C: Transarterial chemoembolization in patients with hepatocellular carcinoma with intra-atrial tumor extension: imaging response and oncologic outcomes. J Vasc Interv Radiol 32(8):1203-1208, 2021.

Nguyen MX, McNaughton Reyes HL, Pence BW, Muessig K, Hutton HE, Latkin CA, Dowdy D, Chander G, Lancaster KE, Frangakis C, Sripaipan T, Ha Tran V, Go VF: The longitudinal association between depression, anxiety symptoms and HIV outcomes, and the modifying effect of alcohol dependence among ART clients with hazardous alcohol use in Vietnam. J Int AIDS Soc 24 Suppl 2:e25746, 2021.

Riello M, Frangakis CE, Ficek B, Webster KT, Desmond JE, Faria AV, Hillis AE, Tsapkini K: Neural correlates of letter and semantic fluency in primary progressive aphasia. Brain Sci 12(1):1, 2021.

Zhao Y, Ficek B, Webster K, Frangakis C, Caffo B, Hillis AE, Faria A, Tsapkini K: White matter integrity predicts electrical stimulation (tDCS) and language therapy effects in primary progressive aphasia. Neurorehabil Neural Repair 35(1):44-57, 2021.

Blackburn NA, Go VF, Bui Q, Hutton H, Tampi RP, Sripaipan T, Ha TV, Latkin C, Golden S, Golin C, Chander G, Frangakis C, Gottfredson N, Dowdy DW: Implementation of two alcohol reduction interventions among persons with hazardous alcohol use who are living with HIV in Thai Nguyen, Vietnam: a micro-costing analysis. Glob Health Action 13(1):1814035, 2020.

de Aguiar V, Zhao Y, Faria A, Ficek B, Webster KT, Wendt H, Wang Z, Hillis AE, Onyike CU, Frangakis C, Caffo B, Tsapkini K: Brain volumes as predictors of tDCS effects in primary progressive aphasia. Brain Lang 200:104707, 2020.

Frangakis CE: The method of envelopes to concisely calculate semiparametric efficient scores under parametric restrictions. Int J Biostat 17(1):1-5, 2020.

Go VF, Hutton HE, Ha TV, Chander G, Latkin CA, Mai NVT, Quynh BX, Nguyen V, Sripaipan T, Lancaster KE, Blackburn N, Hershow RB, Dowdy DW, Frangakis C: Effect of 2 integrated interventions on alcohol abstinence and viral suppression among Vietnamese adults with hazardous alcohol use and HIV: a randomized clinical trial. JAMA Netw Open 3(9):e2017115, 2020.

Hershow RB, Ha TV, Sripaipan T, Latkin C, Hutton HE, Chander G, Bui Q, Nguyen VQ, Frangakis C, Go VF: Perpetration of intimate partner violence among men living with HIV in northern Vietnam. AIDS Behav 24(9):2555-2571, 2020.

Hershow RB, Reyes HLM, Ha TV, Chander G, Mai NVT, Sripaipan T, Frangakis C, Dowdy DW, Latkin C, Hutton HE, Pettifor A, Maman S, Go VF: Alcohol use, depressive symptoms, and intimate partner violence perpetration: a longitudinal analysis among men with HIV in northern Vietnam. PLoS One 15(10):e0240674, 2020.

Lancaster KE, Hetrick A, Sripaipan T, Ha TV, Hutton HE, Chander G, Latkin CA, Dowdy D, Frangakis C, Quynh BX, Go VF: Alcohol abstinence stigma and alcohol use among HIV patients in Thai Nguyen, Vietnam. PLoS One 15(9):e0239330, 2020.

Morkos J, Porosnicu Rodriguez KA, Zhou A, Kolarich AR, Frangakis C, Rodriguez R, Georgiades CS: Percutaneous cryoablation for Stage 1 renal cell carcinoma: outcomes from a 10-year prospective study and comparison with matched cohorts from the National Cancer Database. Radiology 296(2):452-459, 2020.

Nguyen MX, Dowdy D, Latkin CA, Hutton HE, Chander G, Frangakis C, Lancaster KE, Sripaipan T, Bui QX, Tran HV, Go VF: Social support modifies the association between hazardous drinking and depression symptoms among ART clients in Vietnam. Drug Alcohol Depend 215:108249, 2020.

Qian T, Frangakis C, Yiannoutsos C: Double-sampling designs with application to PEPFAR. Stat Biosci 12(3):417-445, 2020.

Chockalingam L, Pence B, Frangakis CE, Ha TV, Latkin CA, Sripaipan T, Quan VM, Go VF: The relationship between health-related variables and increases in smoking among recently diagnosed HIV+ people who inject drugs in Vietnam. Addict Behav 95:118-124, 2019.

de Aguiar V, Zhao Y, Ficek BN, Webster K, Rofes A, Wendt H, Frangakis C, Caffo B, Hillis AE, Rapp B, Tsapkini K: Cognitive and language performance predicts effects of spelling intervention and tDCS in Primary Progressive Aphasia. Cortex 124:66-84, 2019.

Ehrhardt S, Porsteinsson AP, Munro CA, Rosenberg PB, Pollock BG, Devanand DP, Mintzer J, Rajji TK, Ismail Z, Schneider LS, Baksh SN, Drye LT, Avramopoulos D, Shade DM, Lyketsos CG, S-CitAD Research Group (includes Frangakis C): Escitalopram for agitation in Alzheimer's disease (S-CitAD): Methods and design of an investigator-initiated, randomized, controlled, multicenter clinical trial. Alzheimers Dement 15(11):1427-1436, 2019.

Fenner AS, Webster KT, Ficek BN, Frangakis CE, Tsapkini K: Written verb naming improves after tDCS over the left IFG in primary progressive aphasia. Front Psychol 10:1396, 2019.

Levintow SN, Pence BW, Ha TV, Le Minh N, Sripaipan T, Latkin CA, Vu PT, Quan VM, Frangakis C, Go VF: Depressive symptoms at HIV testing and two-year all-cause mortality among men who inject drugs in Vietnam. AIDS Behav 23(3):609-616, 2019.

Werner JD, Frangakis C, Ruck JM, Hong K, Philosophe B, Cameron AM, Saberi B, Gurakar A, Georgiades C: Neoadjuvant transarterial chemoembolization improves survival after liver transplant in patients with hepatocellular carcinoma. Exp Clin Transplant 17(5):638-643, 2019.

Adrian Gherman (go to top of document)

Carass A, Roy S, Gherman A, Reinhold JC, Jesson A, Arbel T, Maier O, Handels H, Ghafoorian M, Platel B, Birenbaum A, Greenspan H, Pham DL, Crainiceanu CM, Calabresi PA, Prince JL, Roncal WRG, Shinohara RT, Oguz I: Evaluating white matter lesion segmentations with refined Sorensen-Dice analysis. Sci Rep 10(1):8242, 2020.

Gherman A, Muschelli J, Caffo B, Crainiceanu C: Rxnat: An open-source R package for XNAT-based repositories. Front Neuroinform 14:572068, 2020.

Muschelli J, Gherman A, Fortin JP, Avants B, Whitcher B, Clayden JD, Caffo BS, Crainiceanu CM: Neuroconductor: an R platform for medical imaging analysis. Biostatistics 20(2):218-239, 2019.

Andre Hackman (go to top of document)

Ippolito MM, Gebhardt ME, Ferriss E, ..., Hackman A, et al: Scientific findings of the Southern and Central Africa International Center of Excellence for Malaria Research: Ten years of malaria control impact assessments in hypo-, meso-, and holoendemic transmission zones in Zambia and Zimbabwe. Am J Trop Med Hyg 107(4_Suppl):55-67, 2022.

Major Extremity Trauma Research Consortium (METRC) (includes Hackman A): Effect of supplemental perioperative oxygen on SSI among adults with lower-extremity fractures at increased risk for infection: a randomized clinical trial. J Bone Joint Surg Am 104(14):1236-1243, 2022.

Wesolowski A, Ippolito MM, Gebhardt ME, ..., Hackman A, et al: Policy implications of the Southern and Central Africa International Center of Excellence for Malaria Research: Ten years of malaria control impact assessments in hypo-, meso-, and holoendemic transmission zones in Zambia and Zimbabwe. Am J Trop Med Hyg 107(4_Suppl):68-74, 2022.

Kasper Hansen (go to top of document)

Boukas L, Luperchio TR, Razi A, Hansen KD, Bjornsson HT: Neuron-specific chromatin disruption at CpG islands and aging-related regions in Kabuki syndrome mice. Genome Res 34(5):696-710, 2024.

Fletez-Brant K, Qiu Y, Gorkin DU, Hu M, Hansen KD: Removing unwanted variation between samples in Hi-C experiments. Brief Bioinform 25(3):bbae217, 2024.

Gao CW, Lin W, Riddle RC, Chopra S, Kim J, Boukas L, Hansen KD, Bjornsson HT, Fahrner JA: Growth deficiency in a mouse model of Kabuki syndrome 2 bears mechanistic similarities to Kabuki syndrome 1. PLoS Genet 20(6):e1011310, 2024.

Gao CW, Lin WY, Riddle RC, Kushwaha P, Boukas L, Bjornsson HT, Hansen KD, Fahnrner JA: A mouse model of Weaver syndrome displays overgrowth and excess osteogenesis reversible with KDM6A/6B inhibition. JCI Insight 9(1):e173392, 2024.

Kuo A, Hansen KD, Hicks SC: Quantification and statistical modeling of droplet-based single-nucleus RNA-sequencing data. Biostatistics 25(3):801-817, 2024.

Majumder MA, Leek JT, Hansen KD, Razi A, McGuire AL: Large-scale genotype prediction from RNA sequence data necessitates a new ethical and policy framework. Nat Genet 56(8):1537-1540, 2024.

Lo EKW, Mears BM, Maurer HC, Idrizi A, Hansen KD, Thompson ED, Hruban RH, Olive KP, Feinberg AP: Comprehensive DNA methylation analysis indicates that pancreatic intraepithelial neoplasia lesions are acinar-derived and epigenetically primed for carcinogenesis. Cancer Res 83(11):1905-1916, 2023.

Maden SK, Walsh B, Ellrott K, Hansen KD, Thompson RF, Nellore A: recountmethylation enables flexible analysis of public blood DNA methylation array data. Bioinform Adv 3(1):vbad020, 2023.

Morin A, Thompson EE, Helling BA, Shorey-Kendrick LE, ..., Hansen K, et al: A functional genomics pipeline to identify high-value asthma and allergy CpGs in the human methylome. J Allergy Clin Immunol 151(6):1609-1621, 2023.

Weber LM, Saha A, Datta A, Hansen KD, Hicks SC: nnSVG for the scalable identification of spatially variable genes using nearest-neighbor Gaussian processes. Nat Commun 14(1):4059, 2023.

Wulfridge P, Davidovich A, Salvador AC, Manno GC, Tryggvadottir R, Idrizi A, Huda MN, Bennett BJ, Adams LG, Hansen KD, Threadgill DW, Feinberg AP: Precision pharmacological reversal of strain-specific diet-induced metabolic syndrome in mice informed by epigenetic and transcriptional regulation. PLoS Genet 19(10):e1010997, 2023.

Zheng SC, Stein-O'Brien G, Boukas L, Goff LA, Hansen KD: Pumping the brakes on RNA velocity by understanding and interpreting RNA velocity estimates. Genome Biol 24(1):246, 2023.

Arneson A, Haghani A, Thompson MJ, Pellegrini M, Kwon SB, Vu H, Maciejewski E, Yao M, Li CZ, Lu AT, Morselli M, Rubbi L, Barnes B, Hansen KD, Zhou W, Breeze CE, Ernst J, Horvath S: A mammalian methylation array for profiling methylation levels at conserved sequences. Nat Commun 13(1):783, 2022.

Hu JR, Myint L, Levey AS, Coresh J, Inker LA, Grams ME, Guallar E, Hansen KD, Rhee EP, Shafi T: A metabolomics approach identified toxins associated with uremic symptoms in advanced chronic kidney disease. Kidney Int 101(2):369-378, 2022.

Schatz MC, Philippakis AA, Afgan E, Banks E, Carey VJ, Carroll RJ, Culotti A, Ellrott K, Goecks J, Grossman RL, Hall IM, Hansen KD, Lawson J, Leek JT, et al: Inverting the model of genomics data sharing with the NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-space. Cell Genom 2(1):100085, 2022.

Wang Y, Hicks SC, Hansen KD: Addressing the mean-correlation relationship in co-expression analysis. PLoS Comput Biol 18(3):e1009954, 2022.

Zheng SC, Stein-O'Brien G, Augustin JJ, Slosberg J, Carosso GA, Winer B, Shin G, Bjornsson HT, Goff LA, Hansen KD: Universal prediction of cell-cycle position using transfer learning. Genome Biol 23(1):41, 2022.

Credle JJ, Robinson ML, Gunn J, Monaco D, Sie B, Tchir A, Hardick J, Zheng X, Shaw-Saliba K, Rothman RE, Eshleman SH, Pekosz A, Hansen K, Mostafa H, Steinegger M, Larman HB: Highly multiplexed oligonucleotide probe-ligation testing enables efficient extraction-free SARS-CoV-2 detection and viral genotyping. Mod Pathol 34(6):1093-1103, 2021.

de Goede OM, Nachun DC, Ferraro NM, Gloudemans MJ, Rao AS, Smail C, Eulalio TY, Aguet F, Ng B, Xu J, Barbeira AN, Castel SE, Kim-Hellmuth S, Park Y, Scott AJ, Strober BJ, GTEx Consortium (includes Hansen K), et al: Population-scale tissue transcriptomics maps long non-coding RNAs to complex disease. Cell 184(10):2633-2648, 2021.

Luperchio TR, Boukas L, Zhang L, Pilarowski GO, Jiang J, Kalinousky A, Hansen KD, Bjornsson HT: Leveraging the Mendelian Disorders of the Epigenetic Machinery to systematically map functional epigenetic variation. Elife 10:e65884, 2021.

Maden SK, Thompson RF, Hansen KD, Nellore A: Human methylome variation across Infinium 450K data on the Gene Expression Omnibus. NAR Genom Bioinform 3(2):lqab025, 2021.

Rizzardi LF, Hickey PF, Idrizi A, Tryggvadottir R, Callahan CM, Stephens KE, Taverna SD, Zhang H, Ramazanoglu S, GTEx Consortium, Hansen KD, Feinberg AP: Human brain region-specific variably methylated regions are enriched for heritability of distinct neuropsychiatric traits. Genome Biol 22(1):116, 2021.

Wilks C, Zheng SC, Chen FY, Charles R, Solomon B, Ling JP, Imada EL, Zhang D, Joseph L, Leek JT, Jaffe AE, Nellore A, Collado-Torres L, Hansen KD, Langmead B: recount3: summaries and queries for large-scale RNA-seq expression and splicing. Genome Biol 22(1):323, 2021.

Boukas L, Bjornsson HT, Hansen KD: Promoter CpG density predicts downstream gene loss-of-function intolerance. Am J Hum Genet 107(3):487-498, 2020.

Castel SE, Aguet F, Mohammadi P, GTEx Consortium (includes Hansen K), Ardlie KG, Lappalainen T: A vast resource of allelic expression data spanning human tissues. Genome Biol 21(1):234, 2020.

Jiang L, Wang M, Lin S, Jian R, Li X, Chan J, Dong G, Fang H, Robinson AE, GTEx Consortium (includes Hansen K), Snyder MP: A quantitative proteome map of the human body. Cell 183(1):269-283, 2020.

Lee I, Razaghi R, Gilpatrick T, Molnar M, Gershman A, Sadowski N, Sedlazeck FJ, Hansen KD, Simpson JT, Timp W: Simultaneous profiling of chromatin accessibility and methylation on human cell lines with nanopore sequencing. Nat Methods 17(12):1191-1199, 2020.

Myint L, Wang R, Boukas L, Hansen KD, Goff LA, Avramopoulos D: A screen of 1,049 schizophrenia and 30 Alzheimer's-associated variants for regulatory potential. Am J Med Genet B Neuropsychiatr Genet 183(1):61-73, 2020.

Rajagopalan S, Park B, Palanivel R, Vinayachandran V, Deiuliis JA, Gangwar RS, Das L, Yin J, Choi Y, Al-Kindi S, Jain MK, Hansen KD, Biswal S: Metabolic effects of air pollution exposure and reversibility. J Clin Invest 130(11):6034-6040, 2020.

Boukas L, Havrilla JM, Hickey PF, Quinlan AR, Bjornsson HT, Hansen KD. Coexpression patterns define epigenetic regulators associated with neurological dysfunction. Genome Res 29(4):532-542, 2019.

Carosso GA, Boukas L, Augustin JJ, Nguyen HN, Winer BL, Cannon GH, Robertson JD, Zhang L, Hansen KD, Goff LA, Bjornsson HT: Precocious neuronal differentiation and disrupted oxygen responses in Kabuki syndrome. JCI Insight 4(20):129375, 2019.

Fahrner JA, Lin WY, Riddle RC, Boukas L, DeLeon VB, Chopra S, Lad SE, Luperchio TR, Hansen KD, Bjornsson HT: Precocious chondrocyte differentiation disrupts skeletal growth in Kabuki syndrome mice. JCI Insight 4(20):129380, 2019.

Gorkin DU, Qiu Y, Hu M, Fletez-Brant K, Liu T, Schmitt AD, Noor A, Chiou J, Gaulton KJ, Sebat J, Li Y, Hansen KD, Ren B: Common DNA sequence variation influences 3-dimensional conformation of the human genome. Genome Biol 20(1):255, 2019.

Myint L, Avramopoulos DG, Goff LA, Hansen KD: Linear models enable powerful differential activity analysis in massively parallel reporter assays. BMC Genomics 20(1):209, 2019.

Rizzardi LF, Hickey PF, Rodriguez DiBlasi V, Tryggvadottir R, Callahan CM, Idrizi A, Hansen KD, Feinberg AP: Neuronal brain-region-specific DNA methylation and chromatin accessibility are associated with neuropsychiatric trait heritability. Nat Neurosci 22(2):307-316, 2019.

Wulfridge P, Langmead B, Feinberg AP, Hansen KD: Analyzing whole genome bisulfite sequencing data from highly divergent genotypes. Nucleic Acids Res 47(19):e117, 2019.

Stephanie Hicks (go to top of document)

Erdogdu B, Varabyou A, Hicks SC, Salzberg SL, Pertea M: Detecting differential transcript usage in complex diseases with SPIT. Cell Rep Methods 4(3):100736, 2024.

Ford K, Zuin E, Righelli D, Medina E, Schoch H, Singletary K, Muheim C, Frank MG, Hicks SC, Risso D, Peixoto L: A global transcriptional atlas of the effect of acute sleep deprivation in the mouse frontal cortex. iScience 27(9):110752, 2024.

Hutchison WJ, Keyes TJ, tidyomics Consortium, Crowell HL, ..., Hicks SC, et al: The tidyomics ecosystem: enhancing omic data analyses. Nat Methods 21(7):1166-1170, 2024.

Huuki-Myers LA, Spangler A, Eagles NJ, ..., Guo B, ..., Hicks SC, ..., Collado-Torres L, et al: A data-driven single-cell and spatial transcriptomic map of the human prefrontal cortex. Science 384(6698):eadh1938, 2024.

Kuo A, Hansen KD, Hicks SC: Quantification and statistical modeling of droplet-based single-nucleus RNA-sequencing data. Biostatistics 25(3):801-817, 2024.

Weber LM, Divecha HR, Tran MN, Kwon SH, Spangler A, Montgomery KD, Tippani M, Bharadwaj R, Kleinman JE, Page SC, Hyde TM, Collado-Torres L, Maynard KR, Martinowich K, Hicks SC: The gene expression landscape of the human locus coeruleus revealed by single-nucleus and spatially-resolved transcriptomics. eLife 12:RP84628, 2024.

Wen C, Margolis M, Dai R, ..., PsychENCODE Consortium (includes Collado Torres L, Hicks S): Cross-ancestry atlas of gene, isoform, and splicing regulation in the developing human brain. Science 384(6698):eadh0829, 2024.

Wrobel J, Hector EC, Crawford L, McGowan L, da Silva N, Goldsmith J, Hicks S, Kane M, Lee Y, Mayrink V, Paciorek CJ, Usher T, Wolfson J: Partnering with authors to enhance reproducibility at JASA. JASA 119(546):795-797, 2024.

Dyjack N, Baker DN, Braverman V, Langmead B, Hicks SC: A scalable and unbiased discordance metric with H. Biostatistics 25(1):188-202, 2023.

Guo B, Huuki-Myers LA, Grant-Peters M, Collado-Torres L, Hicks SC: escheR: unified multi-dimensional visualizations with Gestalt principles. Bioinform Adv 3(1):vbad179, 2023.

Hippen AA, Omran DK, Weber LM, Jung E, Drapkin R, Doherty JA, Hicks SC, Greene CS: Performance of computational algorithms to deconvolve heterogeneous bulk ovarian tumor tissue depends on experimental factors. Genome Biol 24(1):239, 2023.

Hou W, Ji Z, Chen Z, Wherry EJ, Hicks SC, Ji H: A statistical framework for differential pseudotime analysis with multiple single-cell RNA-seq samples. Nat Commun 14(1):7286, 2023.

Huuki-Myers LA, Montgomery KD, Kwon SH, Page SC, Hicks SC, Maynard KR, Collado-Torres L: Data-driven identification of total RNA expression genes for estimation of RNA abundance in heterogeneous cell types highlighted in brain tissue. Genome Biol 24(1):233, 2023.

Maden SK, Kwon SH, Huuki-Myers LA, Collado-Torres L, Hicks SC, Maynard KR: Challenges and opportunities to computationally deconvolve heterogeneous tissue with varying cell sizes using single-cell RNA-sequencing datasets. Genome Biol 24(1):288, 2023.

Nelson ED, Maynard KR, Nicholas KR, Tran MN, Divecha HR, Collado-Torres L, Hicks SC, Martinowich K: Activity-regulated gene expression across cell types of the mouse hippocampus. Hippocampus 33(9):1009-1027, 2023.

Weber LM, Saha A, Datta A, Hansen KD, Hicks SC: nnSVG for the scalable identification of spatially variable genes using nearest-neighbor Gaussian processes. Nat Commun 14(1):4059, 2023.

Mallick H, Chatterjee S, Chowdhury S, Chatterjee S, Rahnavard A, Hicks SC: Differential expression of single-cell RNA-seq data using Tweedie models. Stat Med 41(18):3492-3510, 2022.

Pardo B, Spangler A, Weber LM, Page SC, Hicks SC, Jaffe AE, Martinowich K, Maynard KR, Collado-Torres L: spatialLIBD: an R/Bioconductor package to visualize spatially-resolved transcriptomics data. BMC Genomics 23(1):434, 2022.

Righelli D, Weber LM, Crowell HL, Pardo B, Collado-Torres L, Ghazanfar S, Lun ATL, Hicks SC, Risso D: SpatialExperiment: infrastructure for spatially resolved transcriptomics data in R using Bioconductor. Bioinformatics 38(11):3128-3131, 2022.

Wang Y, Hicks SC, Hansen KD: Addressing the mean-correlation relationship in co-expression analysis. PLoS Comput Biol 18(3):e1009954, 2022.

Baker DN, Dyjack N, Braverman V, Hicks SC, Langmead B: Fast and memory-efficient scRNA-seq k-means clustering with various distances. ACM BCB 2021:24, 2021.

Heil BJ, Hoffman MM, Markowetz F, Lee SI, Greene CS, Hicks SC: Reproducibility standards for machine learning in the life sciences. Nat Methods 18(10):1132-1135, 2021.

Hicks SC, Liu R, Ni Y, Purdom E, Risso D: mbkmeans: Fast clustering for single cell data using mini-batch k-means. PLoS Comput Biol 17(1):e1008625, 2021.

Hippen AA, Falco MM, Weber LM, Erkan EP, Zhang K, Doherty JA, Vaharautio A, Greene CS, Hicks SC: miQC: An adaptive probabilistic framework for quality control of single-cell RNA-sequencing data. PLoS Comput Biol 17(8):e1009290, 2021.

Maynard KR, Collado-Torres L, Weber LM, Uytingco C, Barry BK, Williams SR, Catallini JL 2nd, Tran MN, Besich Z, Tippani M, Chew J, Yin Y, Kleinman JE, Hyde TM, Rao N, Hicks SC, Martinowich K, Jaffe AE: Transcriptome-scale spatial gene expression in the human dorsolateral prefrontal cortex. Nat Neurosci 24(3):425-436, 2021.

Peng RD, Hicks SC: Reproducible research: a retrospective. Annu Rev Public Health 42:79-93, 2021.

Tran MN, Maynard KR, Spangler A, Huuki LA, Montgomery KD, Sadashivaiah V, Tippani M, Barry BK, Hancock DB, Hicks SC, Kleinman JE, Hyde TM, Collado-Torres L, Jaffe AE, Martinowich K: Single-nucleus transcriptome analysis reveals cell-type-specific molecular signatures across reward circuitry in the human brain. Neuron 109(19):3088-3103, 2021.

Weber LM, Hippen AA, Hickey PF, Berrett KC, Gertz J, Doherty JA, Greene CS, Hicks SC: Genetic demultiplexing of pooled single-cell RNA-sequencing samples in cancer facilitates effective experimental design. Gigascience 10(9):giab062, 2021.

Amezquita RA, Lun ATL, Becht E, Carey VJ, Carpp LN, Geistlinger L, Marini F, Rue-Albrecht K, Risso D, Soneson C, Waldron L, Pages H, Smith ML, Huber W, Morgan M, Gottardo R, Hicks SC: Orchestrating single-cell analysis with Bioconductor. Nat Methods 17(2):137-145, 2020.

Hou W, Ji Z, Ji H, Hicks SC: A systematic evaluation of single-cell RNA-sequencing imputation methods. Genome Biol 21(1):218, 2020.

Huang R, Soneson C, Ernst FGM, Rue-Albrecht KC, Yu G, Hicks SC, Robinson MD: TreeSummarizedExperiment: a S4 class for data with hierarchical structure. F1000Res 9:1246, 2020.

Lahnemann D, Koster J, Szczurek E, McCarthy DJ, Hicks SC, et al: Eleven grand challenges in single-cell data science. Genome Biol 21(1):31, 2020.

Hicks SC, Irizarry RA: methylCC: technology-independent estimation of cell type composition using differentially methylated regions. Genome Biol 20(1):261, 2019.

Korthauer K, Kimes PK, Duvallet C, Reyes A, Subramanian A, Teng M, Shukla C, Alm EJ, Hicks SC: A practical guide to methods controlling false discoveries in computational biology. Genome Biol 20(1):118, 2019.

Townes FW, Hicks SC, Aryee MJ, Irizarry RA: Feature selection and dimension reduction for single-cell RNA-Seq based on a multinomial model. Genome Biol 20(1):295, 2019.

Hongkai Ji (go to top of document)

Andargie TE, Roznik K, Redekar N, Hill T, Zhou W, Apalara Z, Kong H, Gordon O, Meda R, Park W, Johnston TS, Wang Y, Brady S, Ji H, Yanovski JA, Jang MK, Lee CM, Karaba AH, Cox AL, Agbor-Enoh S: Cell-free DNA reveals distinct pathology of multisystem inflammatory syndrome in children. J Clin Invest 134(1):e178008, 2024.

Blawski R, Vokshi BH, Guo X, Kittane S, Sallaku M, Chen W, ..., Zhou W, ..., Ji H, et al: Methylation of the chromatin modifier KMT2D by SMYD2 contributes to therapeutic response in hormone-dependent breast cancer. Cell Rep 43(5):114174, 2024.

Hong X, Nadeau K, Wang G, Larman B, Smith KN, Pearson C, Ji H, Frischmeyer-Guerrerio P, Liang L, Hu FB, Wang X: Metabolomic profiles during early childhood and risk of food allergies and asthma in multiethnic children from a prospective birth cohort. J Allergy Clin Immunol 154(1):168-178, 2024.

Jagirdar K, Portuallo ME, Wei M, Wilhide M, Bravo Narula JA, ..., Ji H, et al: ERK hyperactivation serves as a unified mechanism of escape in intrinsic and acquired CDK4/6 inhibitor resistance in acral lentiginous melanoma. Oncogene 43(6):395-405, 2024.

Roznik K, Andargie TE, Johnston TS, Gordon O, Wang Y, Akindele NP, Persaud D, Antar AAR, Manabe YC, Zhou W, Ji H, Agbor-Enoh S, Karaba AH, Thompson EA, Cox AL: Emergency myelopoiesis distinguishes multisystem inflammatory syndrome in children from pediatric severe coronavirus disease 2019. J Infect Dis 230(2):e305-e317, 2024.

Stephens KE, Moore C, Vinson DA, White BE, Renfro Z, Zhou W, Ji Z, Ji H, Zhu H, Guan Y, Taverna SD: Identification of regulatory elements in primary sensory neurons involved in trauma-induced neuropathic pain. Mol Neurobiol 61(3):1845-1859, 2024.

Dykema AG, Zhang J, Cheung LS, Connor S, Zhang B, Zeng Z, Cherry CM, Li T, Caushi JX, Nishimoto M, Munoz AJ, Ji Z, Hou W, Zhan W, ..., Ji H, et al: Lung tumor-infiltrating T_reg have divergent transcriptional profiles and function linked to checkpoint blockade response. Sci Immunol 8(87):eadg1487, 2023.

Fang Y, Ji Z, Zhou W, Abante J, Koldobskiy MA, Ji H, Feinberg AP: DNA methylation entropy is associated with DNA sequence features and developmental epigenetic divergence. Nucleic Acids Res 51(5):2046-2065, 2023.

Hou W, Ji Z, Chen Z, Wherry EJ, Hicks SC, Ji H: A statistical framework for differential pseudotime analysis with multiple single-cell RNA-seq samples. Nat Commun 14(1):7286, 2023.

Huang Y, Dhummakupt A, Khetan P, Nilles T, Zhou W, Mudvari P, Szewczyk J, Chen YH, Boritz E, Ji H, Agwu A, Persaud D: Immune activation and exhaustion marker expression on T-cell subsets in ART-treated adolescents and young adults with perinatal HIV-1 infection as correlates of viral persistence. Front Immunol 14:1007626, 2023.

Keuthan CJ, Schaub JA, Wei M, Fang W, Quillen S, Kimball E, Johnson TV, Ji H, Zack DJ, Quigley HA: Regional gene expression in the retina, optic nerve head, and optic nerve of mice with optic nerve crush and experimental glaucoma. Int J Mol Sci 24(18):13719, 2023.

Li W, Berlinicke C, Huang Y, Giera S, McGrath AG, Fang W, Chen C, Takaesu F, Chang X, Duan Y, Kumar D, Chang C, Mao HQ, Sheng G, Dodge JC, Ji H, Madden S, Zack DJ, Chamling X: High-throughput screening for myelination promoting compounds using human stem cell-derived oligodendrocyte progenitor cells. iScience 26(3):106156, 2023.

Liu W, Liao X, Luo Z, Yang Y, Lau MC, Jiao Y, Shi X, Zhai W, Ji H, Yeong J, Liu J: Probabilistic embedding, clustering, and alignment for integrating spatial transcriptomics data with PRECAST. Nat Commun 14(1):296, 2023.

Qi G, Strober BJ, Popp JM, Keener R, Ji H, Battle A: Single-cell allele-specific expression analysis reveals dynamic and cell-type-specific regulatory effects. Nat Commun 14(1):6317, 2023.

Ramachandran J, Chen W, Lex RK, Windsor KE, Lee H, Wang T, Zhou W, Ji H, Vokes SA: The BAF chromatin complex component SMARCC1 does not mediate GLI transcriptional repression of Hedgehog target genes in limb buds. Dev Biol 504:128-136, 2023.

Shenderov E, De Marzo AM, Lotan TL, Wang H, Chan S, Lim SJ, Ji H, Allaf ME, Chapman C, Moore PA, Chen F, Sorg K, White AM, Church SE, Hudson B, Fields PA, Hu S, Denmeade SR, Pienta KJ, Pavlovich CP, Ross AE, Drake CG, Pardoll DM, Antonarakis ES: Neoadjuvant enoblituzumab in localized prostate cancer: a single-arm, phase 2 trial. Nat Med 29(4):888-897, 2023.

Xu R, Hong X, Ladd-Acosta C, Buckley JP, Choi G, Wang G, Hou W, Wang X, Liang L, Ji H: Contrasting association of maternal plasma biomarkers of smoking and 1-carbon micronutrients with offspring DNA methylation: evidence of aryl hydrocarbon receptor repressor gene-smoking-folate interaction. J Nutr 153(8):2339-2351, 2023.

Zhai J, Ji H, Jiang H: Reconstruction of single-cell trajectories using stochastic tree search. Genes 14(2):318, 2023.

Zhao M, Chauhan P, Sherman CA, Singh A, Kaileh M, Mazan-Mamczarz K, Ji H, Joy J, Nandi S, De S, Zhang Y, Fan J, Becker KG, Loke P, Zhou W, Sen R: NF-κB subunits direct kinetically distinct transcriptional cascades in antigen receptor-activated B cells. Nat Immunology 24(9):1552-1564, 2023.

Dykema AG, Zhang B, Woldemeskel BA, Garliss CC, Rashid R, Westlake T, Zhang L, Zhang J, Cheung LS, Caushi JX, Pardoll DM, Cox AL, Ji H, Smith KN, Blankson JN: SARS-CoV-2 vaccination diversifies the CD4+ spike-reactive T cell repertoire in patients with prior SARS-CoV-2 infection. EBioMedicine 80:104048, 2022.

Fang W, Bell CM, Sapirstein A, Asami S, Leeper K, Zack DJ, Ji H, Kalhor R: Quantitative fate mapping: a general framework for analyzing progenitor state dynamics via retrospective lineage barcoding. Cell 185(24):4604-4620, 2022.

Frumento N, Figueroa A, Wang T, Zahid MN, Wang S, Massaccesi G, Stavrakis G, Crowe JE Jr, Flyak AI, Ji H, Ray SC, Shaw GM, Cox AL, Bailey JR: Repeated exposure to heterologous hepatitis C viruses associates with enhanced neutralizing antibody breadth and potency. J Clin Invest 132(15):e160058, 2022.

Hong X, Liang L, Ji H, Frischmeyer-Guerrerio P, Wang G, Pearson C, Stampfer M, Hu FB, Wang X: Fetal lipidome and incident risk of food allergy: a prospective birth cohort study. Pediatr Allergy Immunol 33(2):e13722, 2022.

Hou W, Zhang M, Ji Y, Hong X, Wang G, Xu R, Liang L, Saria S, Ji H: A prospective birth cohort study of maternal prenatal cigarette smoking assessed by self-report and biomarkers on childhood risk of overweight or obesity. Precis Nutr 1(3):e00017, 2022.

Karaba AH, Zhou W, Hsieh LL, Figueroa A, Massaccesi G, Rothman RE, Fenstermacher KZJ, Sauer L, Shaw-Saliba K, Blair PW, Robinson ML, Leung S, Wesson R, Alachkar N, El-Diwany R, Ji H, Cox AL: Differential cytokine signatures of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) and influenza infection highlight key differences in pathobiology. Clin Infect Dis 74(2):254-262, 2022.

Lex RK, Zhou W, Ji Z, Falkenstein KN, Schuler KE, Windsor KE, Kim JD, Ji H, Vokes SA: GLI transcriptional repression is inert prior to Hedgehog pathway activation. Nat Commun 13(1):808, 2022.

Liu Q, Miao H, Li S, Zhang P, Gerber GF, Follmann D, Ji H, Zeger SL, Chertow DS, Quinn TC, Robinson ML, Kickler TS, Rothman RE, Fenstermacher KZJ, Braunstein EM, Cox AL, Farci P, Fauci AS, Lusso P: Anti-PF4 antibodies associated with disease severity in COVID-19. Proc Natl Acad Sci 119(47):e2213361119, 2022.

Ramachandran J, Zhou W, Bardenhagen AE, Nasr T, Yates ER, Zorn AM, Ji H, Vokes SA: Hedgehog regulation of epithelial cell state and morphogenesis in the larynx. Elife 11:e77055, 2022.

Sharrock AV, Mulligan TS, Hall KR, Williams EM, White DT, Zhang L, Emmerich K, Matthews F, Nimmagadda S, Washington S, Le KD, Meir-Levi D, Cox OL, Saxena MT, Calof AL, Lopez-Burks ME, Lander AD, Ding D, Ji H, Ackerley DF, Mumm JS: NTR 2.0: a rationally engineered prodrug-converting enzyme with substantially enhanced efficacy for targeted cell ablation. Nat Methods 19(2):205-215, 2022.

Shu C, Jaffe AE, Sabunciyan S, Ji H, Astemborski J, Sun J, Bakulski KM, Sosnowski DW, Mehta SH, Kirk GD, Maher BS: Epigenome-wide association analyses of active injection drug use. Drug Alcohol Depend 235:109431, 2022.

Turnbull AE, Ji H, Dinglas VD, Wu AW, Mendez-Tellez PA, Himmelfarb CD, Shanholtz CB, Hosey MM, Hopkins RO, Needham DM: Understanding patients' perceived health after critical illness: analysis of two prospective, longitudinal studies of ARDS survivors. Chest 161(2):407-417, 2022.

Wei X, Li Z, Ji H, Wu H: EDClust: an EM-MM hybrid method for cell clustering in multiple-subject single-cell RNA sequencing. Bioinformatics 38(10):2692-2699, 2022.

Akindele N, Kouo T, Karaba AH, Gordon O, Fenstermacher KZJ, Beaudry J, Rubens JH, Atik CC, Zhou W, Ji H, Tao X, Vaidya D, Mostafa H, Caturegli P, Blair PW, Sauer L, Cox AL, Persaud D: Distinct cytokine and chemokine dysregulation in hospitalized children with acute coronavirus disease 2019 and multisystem inflammatory syndrome with similar levels of nasopharyngeal severe acute respiratory syndrome coronavirus 2 shedding. J Infect Dis 224(4):606-615, 2021.

Caushi JX, Zhang J, Ji Z, Vaghasia A, Zhang B, Hsiue EH, Mog BJ, Hou W, ..., Ji H, et al: Transcriptional programs of neoantigen-specific TIL in anti-PD-1-treated lung cancers. Nature 596(7870):126-132, 2021.

Chamling X, Kallman A, Fang W, Berlinicke CA, Mertz JL, Devkota P, Pantoja IEM, Smith MD, Ji Z, Chang C, Kaushik A, Chen L, Whartenby KA, Calabresi PA, Mao HQ, Ji H, Wang TH, Zack DJ: Single-cell transcriptomic reveals molecular diversity and developmental heterogeneity of human stem cell-derived oligodendrocyte lineage cells. Nat Commun 12(1):652, 2021.

Cottrell T, Zhang J, Zhang B, Kaunitz GJ, Burman P, Chan HY, Verde F, Hooper JE, Hammers H, Allaf ME, Ji H, Taube J, Smith KN: Evaluating T-cell cross-reactivity between tumors and immune-related adverse events with TCR sequencing: pitfalls in interpretations of functional relevance. J Immunother Cancer 9(7):e002642, 2021.

Dykema AG, Zhang B, Woldemeskel BA, Garliss CC, Cheung LS, Choudhury D, Zhang J, Aparicio L, Bom S, Rashid R, Caushi JX, Hsiue EH, Cascino K, Thompson EA, Kwaa AK, Singh D, Thapa S, Ordonez AA, Pekosz A, D'Alessio FR, Powell JD, Yegnasubramanian S, Zhou S, Pardoll DM, Ji H, Cox AL, Blankson JN, Smith KN: Functional characterization of CD4+ T cell receptors crossreactive for SARS-CoV-2 and endemic coronaviruses. J Clin Invest 131(10):e146922, 2021.

Gao M, Fu Y, Zhou W, Gui G, Lal B, Li Y, Xia S, Ji H, Eberhart CG, Laterra J, Ying M: EGFR activates a TAZ-driven oncogenic program in glioblastoma. Cancer Res 81(13):3580-3592, 2021.

Hong X, Surkan PJ, Zhang B, Keiser A, Ji Y, Ji H, Burd I, Bustamante-Helfrich B, Ogunwole SM, Tang WY, Liu L, Pearson C, Cerda S, Zuckerman B, Hao L, Wang X: Genome-wide association study identifies a novel maternal gene x stress interaction associated with spontaneous preterm birth. Pediatr Res 89(6):1549-1556, 2021.

Koldobskiy MA, Jenkinson G, Abante J, Rodriguez DiBlasi VA, Zhou W, Pujadas E, Idrizi A, Tryggvadottir R, Callahan C, Bonifant CL, Rabin KR, Brown PA, Ji H, Goutsias J, Feinberg AP: Converging genetic and epigenetic drivers of paediatric acute lymphoblastic leukaemia identified by an information-theoretic analysis. Nat Biomed Eng 5(4):360-376, 2021.

Sinha S, Satpathy AT, Zhou W, Ji H, Stratton JA, Jaffer A, Bahlis N, Morrissy S, Biernaskie JA: Profiling chromatin accessibility at single-cell resolution. Genomics Proteomics Bioinformatics 19(2):172-190, 2021.

Stephens KE, Zhou W, Renfro Z, Ji Z, Ji H, Guan Y, Taverna SD: Global gene expression and chromatin accessibility of the peripheral nervous system in animal models of persistent pain. J Neuroinflammation 18(1):185, 2021.

Thompson EA, Cascino K, Ordonez AA, Zhou W, ..., Ji H, et al: Metabolic programs define dysfunctional immune responses in severe COVID-19 patients. Cell Rep 34(11):108863, 2021.

Wang G, Foney DM, DiBari J, Hong X, Showell N, Kim KS, Ji H, Pearson C, Mirolli G, Rusk S, Sharfstein J, Cheng TL, Zuckerman B, Wang X: A prospective cohort study on the intersectionality of obesity, chronic disease, social factors, and incident risk of COVID-19 in US low-income minority middle-age mothers. Int J Obes 45(12):2577-2584, 2021.

Wang G, Tang WY, Ji H, Wang X: Prenatal exposure to mercury and precocious puberty: a prospective birth cohort study. Hum Reprod 36(3):712-720, 2021.

Wang G, Tang WY, Wills-Karp M, Ji H, Bartell TR, Ji Y, Hong X, Pearson C, Cheng TL, Wang X: A nonlinear relation between maternal red blood cell manganese concentrations and child blood pressure at age 6-12 y: a prospective birth cohort study. J Nutr 151(3):570-578, 2021.

Xu R, Hong X, Zhang B, Huang W, Hou W, Wang G, Wang X, Igusa T, Liang L, Ji H: DNA methylation mediates the effect of maternal smoking on offspring birthweight: a birth cohort study of multi-ethnic US mother-newborn pairs. Clin Epigenetics 13(1):47, 2021.

Zhang L, Chen C, Fu J, Lilley B, Berlinicke C, Hansen B, Ding D, Wang G, Wang T, Shou D, Ye Y, Mulligan T, Emmerich K, Saxena MT, Hall KR, Sharrock AV, Brandon C, Park H, Kam TI, Dawson VL, Dawson TM, Shim JS, Hanes J, Ji H, Liu JO, Qian J, Ackerley DF, Rohrer B, Zack DJ, Mumm JS: Large-scale phenotypic drug screen identifies neuroprotectants in zebrafish and mouse models of retinitis pigmentosa. Elife 10:e57245, 2021.

Hong X, Zhang B, Liang L, Zhang Y, Ji Y, Wang G, Ji H, Clish CB, Burd I, Pearson C, Zuckerman B, Hu FB, Wang X: Postpartum plasma metabolomic profile among women with preeclampsia and preterm delivery: implications for long-term health. BMC Med 18(1):277, 2020.

Hou W, Ji Z, Ji H, Hicks SC: A systematic evaluation of single-cell RNA-sequencing imputation methods. Genome Biol 21(1):218, 2020.

Ji Z, Zhou W, Hou W, Ji H: Single-cell ATAC-seq signal extraction and enhancement with SCATE. Genome Biol 21(1):161, 2020.

Lex RK, Ji Z, Falkenstein KN, Zhou W, Henry JL, Ji H, Vokes SA: GLI transcriptional repression regulates tissue-specific enhancer activity in response to Hedgehog signaling. Elife 9:e50670, 2020.

Qiu X, Ma F, Zhao M, Cao Y, Shipp L, Liu A, Dutta A, Singh A, Braikia FZ, De S, Wood WH 3rd, Becker KG, Zhou W, Ji H, Zhao K, Atchison ML, Sen R: Altered 3D chromatin structure permits inversional recombination at the IgH locus. Sci Adv 6(33):eaaz8850, 2020.

Shu C, Jaffe AE, Sabunciyan S, Ji H, Astemborski J, Sun J, Bakulski KM, Mehta SH, Kirk GD, Maher BS: Epigenome-wide association scan identifies methylation sites associated with HIV infection. Epigenomics 12(21):1917-1927, 2020.

Surkan PJ, Hong X, Zhang B, Nawa N, Ji H, Tang WY, Ji Y, Kimmel MC, Wang G, Pearson C, Wang X: Can social support during pregnancy affect maternal DNA methylation? Findings from a cohort of African-Americans. Pediatr Res 88(1):131-138, 2020.

Zhang J, Ji Z, Caushi JX, El Asmar M, Anagnostou V, Cottrell TR, Chan HY, Suri P, Guo H, Merghoub T, Chaft JE, Reuss JE, Tam AJ, Blosser RL, Abu-Akeel M, Sidhom JW, Zhao N, Ha JS, Jones DR, Marrone KA, Naidoo J, Gabrielson E, Taube JM, Velculescu VE, Brahmer JR, Housseau F, Hellmann MD, Forde PM, Pardoll DM, Ji H, Smith KN: Compartmental analysis of T-cell clonal dynamics as a function of pathologic response to neoadjuvant PD-1 blockade in resectable non-small cell lung cancer. Clin Cancer Res 26(6):1327-1337, 2020.

Azuine RE, Ji Y, Chang HY, Kim Y, Ji H, DiBari J, Hong X, Wang G, Singh GK, Pearson C, Zuckerman B, Surkan PJ, Wang X: Prenatal risk factors and perinatal and postnatal outcomes associated with maternal opioid exposure in an urban, low-income, multiethnic US population. JAMA Netw Open 2(6):e196405, 2019.

Chen Z, Ji Z, Ngiow SF, Manne S, Cai Z, Huang AC, Johnson J, Staupe RP, Bengsch B, Xu C, Yu S, Kurachi M, Herati RS, Vella LA, Baxter AE, Wu JE, Khan O, Beltra JC, Giles JR, Stelekati E, McLane LM, Lau CW, Yang X, Berger SL, Vahedi G, Ji H, Wherry EJ: TCF-1-centered transcriptional network drives an effector versus exhausted CD8 T cell-fate decision. Immunity 51(5):840-855, 2019.

Hong X, Liang L, Sun Q, Keet CA, Tsai HJ, Ji Y, Wang G, Ji H, Clish C, Pearson C, Wang Y, Wood RA, Hu FB, Wang X: Maternal triacylglycerol signature and risk of food allergy in offspring. J Allergy Clin Immunol 144(3):729-737, 2019.

Ji Z, Ji H: Pseudotime reconstruction using TSCAN. Methods Mol Biol 1935:115-124, 2019.

Olapeju B, Saifuddin A, Wang G, Ji Y, Hong X, Raghavan R, Summers A, Keiser A, Ji H, Zuckerman B, Yarrington C, Hao L, Surkan PJ, Cheng TL, Wang X: Maternal postpartum plasma folate status and preterm birth in a high-risk US population. Public Health Nutr 22(7):1281-1291, 2019.

Stephens KE, Zhou W, Ji Z, Chen Z, He S, Ji H, Guan Y, Taverna SD: Sex differences in gene regulation in the dorsal root ganglion after nerve injury. BMC Genomics 20(1):147, 2019.

Surkan PJ, Dong L, Ji Y, Hong X, Ji H, Kimmel M, Tang WY, Wang X: Paternal involvement and support and risk of preterm birth: findings from the Boston birth cohort. J Psychosom Obstet Gynaecol 40(1):48-56, 2019.

Wang G, DiBari J, Bind E, Steffens AM, Mukherjee J, Azuine RE, Singh GK, Hong X, Ji Y, Ji H, Pearson C, Zuckerman BS, Cheng TL, Wang X: Association between maternal exposure to lead, maternal folate status, and intergenerational risk of childhood overweight and obesity. JAMA Netw Open 2(10):e1912343, 2019.

Zhou W, Ji Z, Fang W, Ji H: Global prediction of chromatin accessibility using small-cell-number and single-cell RNA-seq. Nucleic Acids Res 47(19):e121, 2019.

Sophia Li (go to top of document)

Fukui N, Li SS, DeGuzman J, Myers JF, Openshaw J, Sharma A, Watt J, Lewnard JA, Jain S, Andrejko KL, Pry JM, California COVID-19 Case-Control Study Team: Mixed methods approach to examining the implementation experience of a phone-based survey for a SARS-CoV-2 test-negative case-control study in California. PLoS One 19(5):e0301070, 2024.

Andrejko KL, Myers JF, Fukui N, ... on behalf of the California Covid-Case-Control Study Team (includes Li S): Real-world uptake of COVID-19 vaccination among individuals expressing vaccine hesitancy: a registry-linkage study. Vaccine 41(10):1649-1656, 2023.

Andrejko KL, Myers JF, Openshaw J, Fukui N, Li S, et al: Receipt of COVID-19 and seasonal influenza vaccines in California (USA) during the 2021-2022 influenza season. Vaccine 41(6):1190-1197, 2023.

Andrejko KL, Pry JM, Myers JF, Mehrotra M, ... on behalf of the California Covid-Case-Control Study Team (includes Li S): Waning of 2-dose BNT162b2 and mRNA-1273 vaccine effectiveness against symptomatic SARS-CoV-2 infection accounting for depletion-of-susceptibles bias. Am J Epidemiol 192(6):895-907, 2023.

Andrejko KL, Pry J, Myers JF, Openshaw J, Watt J, ..., Li SS, et al: Predictors of severe acute respiratory syndrome coronavirus 2 infection following high-risk exposure. Clin Infect Dis 75(1):e276-e288, 2023.

Andrejko KL, Pry JM, Myers JF, Fukui N, ..., California Covid-Case-Control Study Team (includes Li S): Effectiveness of face mask or respirator use in indoor public settings for prevention of SARS-CoV-2 infection-California, February-December 2021. MMWR Morb Mortal Wkly Rep 71(6):212-216, 2022.

Andrejko KL, Pry J, Myers JF, Jewell NP, ..., California COVID-19 Case-Control Study Team (includes Li S): Prevention of coronavirus disease 2019 (COVID-19) by mRNA-based vaccines within the general population of California. Clin Infect Dis 74(8):1382-1389, 2022.

Ximin Li (go to top of document)

Abousy M, Drew-Bear LE, Gibbons A, Pan-Doh N, Li X, Handa JT: In-depth analysis of preoperative OCT markers as prognostic factors for lamellar macular holes and epiretinal membrane foveoschisis. Ophthalmol Retina 8(5):465-472, 2024.

Awidi AA, Chang DF, Riaz KM, Li X, LaBorwit S, Zebardast N, Srikumaran D, Prescott CR, Daoud YJ, Woreta FA: Anti-inflammatory medication use after cataract surgery: online survey of practice patterns. J Cataract Refract Surg 50(3):224-229, 2024.

Awidi AA, Zhao J, Li X, Rajaii F, Ahmad M, Jensen A, Woreta FA: Etiology and characteristics of patients presenting with eyelid lacerations at a level 1 trauma center. Clin Ophthalmol 18:929-935, 2024.

Hannan K, Li X, Mehta A, Yenokyan G, Payne JL, Shea AA, Hantsoo L: Mood symptoms and gut function across the menstrual cycle in individuals with premenstrual syndrome. Horm Behav 166:105634, 2024.

Zhao D, Li X, Carey AR, Henderson AD, Sight Outcomes Research Collaborative Consortium: Optic neuritis and cranial neuropathies diagnosis rates before coronavirus disease 2019, in the initial pandemic phase, and post-vaccine introduction. Ophthalmology 131(1):78-86, 2024.

Abousy M, Schilling A, Qiu M, Rajaii F, Li X, Woreta FA: Ophthalmology resident oculofacial surgery case exposure: an ACGME case log analysis. Ophthalmic Plast Reconstr Surg 39(2):187-193, 2023.

Nozadi SS, Li X, Kong X, Rennie B, Kanda D, MacKenzie D, Luo L, Posner J, Blackwell CK, Croen LA, Ferrara A, O'Connor TG, Zimmerman E, Ghassabian A, Leve LD, Elliott AJ, Schmidt RJ, Sprowles JLN, Lewis JL: Effects of COVID-19 financial and social hardships on infants' and toddlers' development in the ECHO Program. Int J Environ Res Public Health 20(2):1013, 2023.

Ondersma SJ, Kress AM, Stroustrup A, Annett RD, Avalos LA, Talavera-Barber M, Brennan PA, Camargo CA Jr, Conradt E, Dunlop AL, Elliott AJ, Hedderson MM, Li X, McGrath M, Nguyen RHN, Page GP, Sathyanarayana S, Lester B: The association between intrauterine exposure to opioids, tobacco, alcohol, and cannabis and length of birth hospitalization among neonates without NOWS. J Perinatol 43(7):949-951, 2023.

Pytell JD, Li X, Thompson C, Lesko CR, McCaul ME, Hutton H, Scott Batey D, Cachay E, Mayer KH, Napravnik S, Christopoulos K, Yang C, Crane HM, Chander G, Lau B: The temporal relationship of alcohol use and subsequent self-reported health status among people with HIV. Am J Med Open 9:100020, 2023.

Sun E, Li X, Gruener AM, Chang JR, Eberhart CG, Henderson AD, Carey AR: Presenting features of giant cell arteritis with active versus healed arteritis on biopsy. Neuroophthalmology 47(3):129-135, 2023.

Sun E, Li X, Gruener AM, Chang JR, Henderson AD, Carey AR: Baseline characteristics and clinical presentation of biopsy-proven giant cell arteritis in white compared with black patients. J Neuroophthalmol 43(4):504-508, 2023.

Abousy M, Schilling A, Qiu M, Justin GA, Rajaii F, Li X, Woreta FA: Ophthalmology resident ophthalmic trauma case exposure: trends over time and an ACGME case log analysis. Clin Ophthalmol 16:1365-1373, 2022.

Fliotsos MJ, Campbell JA, Li X, Engstrom MB, Stoeger CG, McClory C, Titus MS, Johnson P, Johnston KB, Fischer T, Brooks LK, Montoya MM, Glasser DB, Akpek EK, Srikumaran D: Trends in early graft failure leading to regrafting after endothelial keratoplasty in the United States. Cornea 41(7):833-839, 2022.

Guan C, Pease ME, Quillen S, Ling YTT, Li X, Kimball E, Johnson TV, Nguyen TD, Quigley HA: Quantitative microstructural analysis of cellular and tissue remodeling in human glaucoma optic nerve head. Invest Ophthalmol Vis Sci 63(11):18, 2022.

Hill S, Topel K, Li X, Solomon BS: Engagement in a social needs navigation program and health care utilization in pediatric primary care. Acad Pediatr 22(7):1221-1227, 2022.

Iannuzzelli K, Shi R, Carter R, Huynh R, Morgan O, Kuo SH, Bang J, Mills KA, Baranano K, Zee DS, Moukheiber E, Roda R, Butala A, Marvel C, Joyce M, Li X, Wang J, Rosenthal LS: The association between educational attainment and SCA 3 age of onset and disease course. Parkinsonism Relat Disord 98:99-102, 2022.

Justin GA, Miller SC, Tsou B, Li X, Purt B, Fliotsos MJ, Zhao J, Gardner SE, Legault GL, Yonekawa Y, Rapuano CJ, Woreta FA, Pelton RW: Ghost and honorary authorship in ophthalmology: a cross-sectional survey. Am J Ophthalmol 240:67-78, 2022.

Miller SC, Meeralakshmi P, Fliotsos MJ, Justin GA, Yonekawa Y, Chen A, Hoskin AK, Blanch RJ, Cavuoto KM, Low R, Li X, et al: Global current practice patterns for the management of hyphema. Clin Ophthalmol 16:3135-3144, 2022.

Colantuoni E, Koneru M, Akhlaghi N, Li X, Hashem MD, Dinglas VD, Neufeld KJ, Harhay MO, Needham DM: Heterogeneity in design and analysis of ICU delirium randomized trials: a systematic review. Trials 22(1):354, 2021.

Colantuoni E, Li X, Hashem MD, Girard TD, Scharfstein DO, Needham DM: A structured methodology review showed analyses of functional outcomes are frequently limited to "survivors only" in trials enrolling patients at high risk of death. J Clin Epidemiol 137:126-132, 2021.

Dunlop AL, Essalmi AG, Alvalos L, ..., Li X, et al: Racial and geographic variation in effects of maternal education and neighborhood-level measures of socioeconomic status on gestational age at birth: Findings from the ECHO cohorts. PLoS One 16(1):e0245064, 2021.

Mannschreck DB, Li X, Okoye G: Rural melanoma patients in Maryland do not present with more advanced disease than urban patients. Dermatol Online J 27(5), 2021.

Ong SS, Liu TYA, Li X, Singh MS: Choriocapillaris flow loss in center-involving retinitis pigmentosa: a quantitative optical coherence tomography angiography study using a novel classification system. Graefes Arch Clin Exp Ophthalmol 259(11):3235-3242, 2021.

Shah YS, Zhu AY, Zafar SI, Sarezky D, Li X, Liu TYA, Sachdeva MM, Woreta FA: Clinical outcomes of secondary scleral-sutured foldable hydrophilic acrylic intraocular lens placement by trainees: a single-site analysis. Clin Ophthalmol 15:783-790, 2021.

Ansah DO, Li X, Gehlbach PL, Jun AS, Soiberman US: Prediction error in iris suture fixated intraocular lenses and long-term stability. Clin Exp Ophthalmol 48(9):1175-1182, 2020.

Ong SS, Linz MO, Li X, Liu TYA, Han IC, Scott AW: Retinal thickness and microvascular changes in children with sickle cell disease evaluated by optical coherence tomography (OCT) and OCT angiography. Am J Ophthalmol 209:88-98, 2020.

Ellenbogen MI, Brotman DJ, Prichett L, Li X, Feldman LS: Contemporary rates of preoperative cardiac testing prior to inpatient hip fracture surgery. J Hosp Med 14(4):224-228, 2019.

Hosey MM, Leoutsakos JS, Li X, Dinglas VD, Bienvenu OJ, Parker AM, Hopkins RO, Needham DM, Neufeld KJ: Screening for posttraumatic stress disorder in ARDS survivors: validation of the Impact of Event Scale-6 (IES-6). Crit Care 23(1):276, 2019.

Hutton HE, Lesko CR, Li X, Thompson CB, Lau B, Napravnik S, Mayer KH, Mathews WC, McCaul ME, Crane HM, Fredericksen RJ, Cropsey KL, Saag M, Christopoulos K, Chander G: Alcohol use patterns and subsequent sexual behaviors among women, men who have sex with men and men who have sex with women engaged in routine HIV care in the United States. AIDS Behav 23(6):1634-1646, 2019.

Lewis JF, Zeger SL, Li X, Mann NC, Newgard CD, Haynes S, Wood SF, Dai M, Simon AE, McCarthy ML: Gender differences in the quality of EMS care nationwide for chest pain and out-of-hospital cardiac arrest. Womens Health Issues 29(2):116-124, 2019.

McCarthy ML, Haynes S, Li X, Mann NC, Newgard CD, Lewis JF, Simon AE, Wood SF, Zeger SL: "Make the Call, Don't Miss a Beat" campaign: effect on emergency medical services use in women with heart attack signs. Womens Health Issues 29(5):392-399, 2019.

Martin Lindquist (go to top of document)

Bailey DH, Jung AJ, Beltz AM, Eronen MI, Gische C, Hamaker EL, Kording KP, Lebel C, Lindquist MA, Moeller J, Razi A, Rohrer JM, Zhang B, Murayama K: Causal inference on human behaviour. Nat Hum Behav 8(8):1448-1459, 2024.

Botvinik-Nezer R, Petre B, Ceko M, Lindquist MA, Friedman NP, Wager TD: Placebo treatment affects brain systems related to affective and cognitive processes, but not nociceptive pain. Nat Commun 15(1):6017, 2024.

Leroux A, Crainiceanu C, Zeger S, Taub M, Ansari B, Wager TD, Bayman E, Coffey C, Langefeld C, McCarthy R, Tsodikov A, Brummet C, Clauw DJ, Edwards RR, Lindquist MA, A2CPS Consortium: Statistical modeling of acute and chronic pain patient-reported outcomes obtained from ecological momentary assessment. Pain 165(9):1955-1965, 2024.

Lopez Naranjo C, Razzaq FA, Li M, Wang Y, Bosch-Bayard JF, Lindquist MA, et al: EEG functional connectivity as a Riemannian mediator: an application to malnutrition and cognition. Hum Brain Mapp 45(7):e26698, 2024.

Stewart BW, Keaser ML, Lee H, Margerison SM, Cormie MA, Moayedi M, Lindquist MA, Chen S, Mathur BN, Seminowicz DA: Pathological claustrum activity drives aberrant cognitive network processing in human chronic pain. Curr Biol 34(9):1953-1966, 2024.

Wang G, Datta A, Lindquist MA: Improved fMRI-based pain prediction using Bayesian group-wise functional registration. Biostatistics 25(3):885-903, 2024.

Andreella A, Finos L, Lindquist MA: Enhanced hyperalignment via spatial prior information. Hum Brain Mapp 4(4):1725-1740, 2023.

Bogaerts K, Van Den Houte M, Jongen D, Ly HG, Coppens E, Schruers K, Van Diest I, Jan T, Van Wambeke P, Petre B, Kragel PA, Lindquist MA, Wager TD, Van Oudenhove L, Van den Bergh O: Brain mediators of negative affect-induced physical symptom reporting in patients with functional somatic syndromes. Trans Psychiatry 13(1):285, 2023.

Chin EM, Gorny N, Pekar JJ, Campbell CM, Lindquist M, Lenz C, Hoon AH Jr, Jantzie LL, Robinson S: A second dimension of somatosensory system injury? Thalamic volume loss and neuropathic pain in adults with cerebral palsy and periventricular white matter injury. Ann Child Neurol Soc 1(4):305-311, 2023.

Gujar SK, Manzoor K, Wongsripuemtet J, Wang G, Ryan D, Agarwal S, Lindquist M, Caffo B, Pillai JJ, Sair HI: Identification of the language network from resting-state fMRI in patients with brain tumors: how accurate are experts? AJNR Am J Neuroradiol 44(3):274-282, 2023.

Kim J, Andrews-Hanna JR, Eisenbarth H, Lux BK, Kim HJ, Lee E, Lindquist MA, Losin EAR, Wager TD, Woo CW: A dorsomedial prefrontal cortex-based dynamic functional connectivity model of rumination. Nat Commun 14(1):3540, 2023.

Meng Q, Cui E, Leroux A, Mowry EM, Lindquist MA, Crainiceanu CM: Quantifying the association between objectively measured physical activity and multiple sclerosis in the UK Biobank. Med Sci Sports Exerc 55(12):2194-2202, 2023.

Murtha K, Larsen B, Pines A, Parkes L, Moore TM, Adebimpe A, Bertolero M, Alexander-Bloch A, Calkins ME, Davila DG, Lindquist MA, Mackey AP, Roalf DR, Scott JC, Wolf DH, Gur RC, Gur RE, Barzilay R, Satterthwaite TD: Associations between neighborhood socioeconomic status, parental education, and executive system activation in youth. Cereb Cortex 33(4):1058-1073, 2023.

Nath T, Caffo B, Wager T, Lindquist MA: A machine learning based approach towards high-dimensional mediation analysis. Neuroimage 268:119843, 2023.

Robinson ML, Garibaldi BT, Lindquist MA: When clinical prediction is steering the ship, beware the drift of its wake. Ann Intern Med 176(10):1424-1425, 2023.

Sluka KA, Wager TD, ..., Caffo B, ..., Lindquist M, et al: Predicting chronic postsurgical pain: current evidence and a novel program to develop predictive biomarker signatures. Pain 164(9):1912-1926, 2023.

Smith BB, Zhao Y, Lindquist MA, Caffo B: Regression models for partially localized fMRI connectivity analyses. Front Neuroimaging 2:1178359, 2023.

Tang B, Zhao Y, Venkataraman A, Tsapkini K, Lindquist MA, Pekar J, Caffo B: Differences in functional connectivity distribution after transcranial direct-current stimulation: a connectivity density point of view. Hum Brain Mapping 44(1):170-185, 2023.

Zhao A, Cui E, Leroux A, Lindquist MA, Crainiceanu CM: Evaluating the prediction performance of objective physical activity measures for incident Parkinson's disease in the UK Biobank. J Neurol 270(12):5913-5923, 2023.

Zorina-Lichtenwalter K, Bango CI, Van Oudenhove L, Ceko M, Lindquist MA, Grotzinger AD, Keller MC, Friedman NP, Wager TD: Genetic risk shared across 24 chronic pain conditions: identification and characterization with genomic structural equation modeling. Pain 164(10):2239-2252, 2023.

Berardi G, Frey-Law L, ..., Lindquist M, Caffo BS, Crainiceanu C, Zeger S, ..., Taub M, et al: Multi-site observational study to assess biomarkers for susceptibility or resilience to chronic pain: The Acute to Chronic Pain Signatures (A2CPS) study protocol. Front Med 9:849214, 2022.

Cheng JC, Anzolin A, Berry M, Honari H, Paschali M, Lazaridou A, Lee J, Ellingsen DM, Loggia ML, Grahl A, Lindquist MA, Edwards RR, Napadow V: Dynamic functional brain connectivity underlying temporal summation of pain in fibromyalgia. Arthritis Rheumatol 74(4):700-710, 2022.

Honari H, Lindquist MA: Mode decomposition-based time-varying phase synchronization for fMRI. Neuroimage 261:119519, 2022.

Krimmel SR, DeSouza DD, Keaser ML, Sanjanwala BM, Cowan RP, Lindquist MA, Haythornthwaite JA, Seminowicz DA: Three dimensions of association link migraine symptoms and functional connectivity. J Neurosci 42(31):6156-6166, 2022.

Langenecker SA, Westlund Schreiner M, Thomas LR, Bessette KL, DelDonno SR, Jenkins LM, Easter RE, Stange JP, Pocius SL, Dillahunt A, Love TM, Phan KL, Koppelmans V, Paulus M, Lindquist MA, Caffo B, Mickey BJ, Welsh RC: Using network parcels and resting-state networks to estimate correlates of mood disorder and related research domain criteria constructs of reward responsiveness and inhibitory control. Biol Psychiatry Cogn Neurosci Neuroimaging 7(1):76-84, 2022.

Santhanam P, Nath T, Lindquist MA, Cooper DS: Relationship between TSH levels and cognition in the young adult: an analysis of the human connectome project data. J Clin Endocrinol Metab 107(7):1897-1905, 2022.

Wang G, Datta A, Lindquist MA: Bayesian functional registration of fMRI activation maps. Ann Appl Stat 16 (3), 1676-1699, 2022.

Weaver C, Xiao L, Lindquist MA: Single-index models with functional connectivity network predictors. Biostatistics 24(1):52-67, 2022.

Zhu X, Suarez-Jimenez B, Lazarov A, Such S, Marohasy C, Small SS, Wager TD, Lindquist MA, Lissek S, Neria Y: Sequential fear generalization and network connectivity in trauma exposed humans with and without psychopathology. Commun Biol 5(1):1275, 2022.

Barber AD, Hegarty CE, Lindquist M, Karlsgodt KH: Heritability of functional connectivity in resting state: assessment of the dynamic mean, dynamic variance, and static connectivity across networks. Cereb Cortex 31(6):2834-2844, 2021.

Beheshtian E, Jalilianhasanpour R, Modir Shanechi A, Sethi V, Wang G, Lindquist MA, Caffo BS, Agarwal S, Pillai JJ, Gujar SK, Sair HI: Identification of the somatomotor network from language task-based fMRI compared with resting-state fMRI in patients with brain lesions. Radiology 301(1):178-184, 2021.

Choe AS, Tang B, Smith KR, Honari H, Lindquist MA, Caffo BS, Pekar JJ: Phase-locking of resting-state brain networks with the gastric basal electrical rhythm. PLoS One 16(1):e0244756, 2021.

Duffy KA, Fisher ZF, Arizmendi CA, Molenaar PCM, Hopfinger J, Cohen JR, Beltz AM, Lindquist MA, Hallquist MN, Gates KM: Detecting task-dependent functional connectivity in group iterative multiple model estimation with person-specific hemodynamic response functions. Brain Connect 11(6):418-429, 2021.

Duffy KA, Rosch KS, Nebel MB, Seymour KE, Lindquist MA, Pekar JJ, Mostofsky SH, Cohen JR: Increased integration between default mode and task-relevant networks in children with ADHD is associated with impaired response control. Dev Cogn Neurosci 50:100980, 2021.

Honari H, Choe AS, Lindquist MA: Evaluating phase synchronization methods in fMRI: a comparison study and new approaches. Neuroimage 228:117704, 2021.

Kragel PA, Ceko M, Theriault J, Chen D, Satpute AB, Wald LW, Lindquist MA, Feldman Barrett L, Wager TD: A human colliculus-pulvinar-amygdala pathway encodes negative emotion. Neuron 109(15):2404-2412, 2021.

Ma W, Xiao L, Liu B, Lindquist MA: A functional mixed model for scalar on function regression with application to a functional MRI study. Biostatistics 22(3):439-454, 2021.

Shappell HM, Duffy KA, Rosch KS, Pekar JJ, Mostofsky SH, Lindquist MA, Cohen JR: Children with attention-deficit/hyperactivity disorder spend more time in hyperconnected network states and less time in segregated network states as revealed by dynamic connectivity analysis. Neuroimage 229:117753, 2021.

Wang G, Muschelli J, Lindquist MA: Moderated t-tests for group-level fMRI analysis. Neuroimage 237:118141, 2021.

Geuter S, Reynolds Losin EA, Roy M, Atlas LY, Schmidt L, Krishnan A, Koban L, Wager TD, Lindquist MA: Multiple brain networks mediating stimulus-pain relationships in humans. Cereb Cortex 30(7):4204-4219, 2020.

Lindquist M: Neuroimaging results altered by varying analysis pipelines. Nature 582(7810):36-37, 2020.

Lurie DJ, Kessler D, Bassett DS, Betzel RF, Breakspear M, Kheilholz S, Kucyi A, Liegeois R, Lindquist MA, McIntosh AR, Poldrack RA, Shine JM, Thompson WH, Bielczyk NZ, Douw L, Kraft D, Miller RL, Muthuraman M, Pasquini L, Razi A, Vidaurre D, Xie H, Calhoun VD: Questions and controversies in the study of time-varying functional connectivity in resting fMRI. Netw Neurosci 4(1):30-69, 2020.

Mejia AF, Yue YR, Bolin D, Lindgren F, Lindquist MA: A Bayesian general linear modeling approach to cortical surface fMRI data analysis. JASA 115(530):501-520, 2020.

Sobel ME, Lindquist MA: Estimating causal effects in studies of human brain function: New models, methods and estimands. Ann Appl Stat 14(1): 452-472, 2020.

Zhao Y, Lindquist MA, Caffo BS: Sparse principal component based high-dimensional mediation analysis. Comput Stat Data Anal 142: 106835, 2020.

Branscheidt M, Kassavetis P, Anaya M, Rogers D, Huang HD, Lindquist MA, Celnik P: Fatigue induces long-lasting detrimental changes in motor-skill learning. Elife 8:e40578, 2019.

Honari H, Choe AS, Pekar JJ, Lindquist MA: Investigating the impact of autocorrelation on time-varying connectivity. Neuroimage 197:37-48, 2019.

Krause AJ, Prather AA, Wager TD, Lindquist MA, Walker MP: The pain of sleep loss: a brain characterization in humans. J Neurosci 39(12):2291-2300, 2019.

Lindquist MA, Geuter S, Wager TD, Caffo BS: Modular preprocessing pipelines can reintroduce artifacts into fMRI data. Hum Brain Mapp 40(8):2358-2376, 2019.

Schambra HM, Xu J, Branscheidt M, Lindquist M, Uddin J, Steiner L, Hertler B, Kim N, Berard J, Harran MD, Cortes JC, Kitago T, Luft A, Krakauer JW, Celnik PA: Differential poststroke motor recovery in an arm versus hand muscle in the absence of motor evoked potentials. Neurorehabil Neural Repair 33(7):568-580, 2019.

Seminowicz DA, Remeniuk B, Krimmel SR, Smith MT, Barrett FS, Wulff AB, Furman AJ, Geuter S, Lindquist MA, Irwin MR, Finan PH: Pain-related nucleus accumbens function: modulation by reward and sleep disruption. Pain 160(5):1196-1207, 2019.

Shappell H, Caffo BS, Pekar JJ, Lindquist MA: Improved state change estimation in dynamic functional connectivity using hidden semi-Markov models. Neuroimage 191:243-257, 2019.

van der Miesen MM, Lindquist MA, Wager TD: Neuroimaging-based biomarkers for pain: state of the field and current directions. Pain Rep 4(4):e751, 2019.

Xu J, Branscheidt M, Schambra H, Steiner L, Widmer M, Diedrichsen J, Goldsmith J, Lindquist M, Kitago T, Luft AR, Krakauer JW, Celnik PA, SMARTS Study Group: Rethinking interhemispheric imbalance as a target for stroke neurorehabilitation. Ann Neurol 85(4):502-513, 2019.

Thomas Louis (go to top of document)

Berube S, Kobayashi T, Norris DE, Ruczinski I, Moss WJ, Wesolowski A, Louis TA: Novel bioinformatic methods and machine learning approaches reveal candidate biomarkers of the intensity and timing of past exposure to Plasmodium falciparum. PLoS Glob Public Health 3(8):e0001840, 2023.

Berube S, Kobayashi T, Wesolowski A, Norris DE, Ruczinski I, Moss WJ, Louis TA: A Bayesian hierarchical model for signal extraction from protein microarrays. Stat Med 42(9):1445-1460, 2023.

Habermann H, Louis TA, Reeder F: Is autonomy possible and is it a good thing? Stat Public Policy 10(1):2221314, 2023.

Henderson NC, Varadhan R, Louis T: Improved small domain estimation via compromise regression weights. JASA 118(544):2793-2809, 2023.

Berube S, Kobayashi T, Wesolowski A, Norris DE, Ruczinski I, Moss WJ, Louis TA: A pre-processing pipeline to quantify, visualize, and reduce technical variation in protein microarray studies. Proteomics 22(3):e2100033, 2022.

Collaco JM, Raraigh KS, Betz J, Aksit MA, Blau N, Brown J, Dietz HC, MacCarrick G, Nogee LM, Sheridan MB, Vernon HJ, Beaty TH, Louis TA, Cutting GR: Accurate assignment of disease liability to genetic variants using only population data. Genet Med 24(1):87-99, 2022.

Ippolito MM, Kabuya JB, Hauser M, Kamavu LK, Banda PM, Yanek LR, Malik R, Mulenga M, Bailey JA, Chongwe G, Louis TA, Shapiro TA, Moss WJ, Southern and Central Africa International Centers of Excellence for Malaria Research: Whole blood transfusion for severe malarial anemia in a high plasmodium falciparum transmission setting. Clin Infect Dis 75(11):1893-1902, 2022.

Louis TA: Discussion of The Statistician in Medicine, by Professor Sir Austin Bradford Hill. Stat Med 40(1):35-36, 2021.

Rothmann M, Crown W, Louis TA, Permutt T, Ruberg S, Segal J, Scott J: Assessing and communicating heterogeneity of treatment effects for patient subpopulations: Panel discussion on considerations in design and analysis. Pharm Stat 20(5):952-964, 2021.

Daumit GL, Janssen EM, Jerome GJ, Dalcin AT, Charleston J, Clark JM, Coughlin JW, Yeh HC, Miller ER, Durkin N, Louis TA, Frick KD, Wang NY, Appel LJ: Cost of behavioral weight loss programs implemented in clinical practice: The POWER trial at Johns Hopkins. Transl Behav Med 10(1):103-113, 2020.

Henderson NC, Louis TA, Rosner GL, Varadhan R: Individualized treatment effects with censored data via fully nonparametric Bayesian accelerated failure time models. Biostatistics 21(1):50-68, 2020.

Brownstein NC, Louis TA, O'Hagan A, Pendergast J: The role of expert judgment in statistical inference and evidence-based decision-making. The American Statistician 73(S1):56-68, 2019.

Datta A, Lin W, Rao A, Diouf D, Kouame A, Edwards JK, Bao L, Louis TA, Baral S: Bayesian estimation of MSM population size in Cote d'Ivoire. Stat Public Policy 6(1):1-13, 2019.

Franco C, Little RJA, Louis TA, Slud EV: Comparative study of confidence intervals for proportions in complex sample surveys. J Surv Stat Methodol 7(3):334-364, 2019.

Li Q, Louis TA, Liu L, Wang C, Tsui AO: Subnational estimation of modern contraceptive prevalence in five sub-Saharan African countries: a Bayesian hierarchical approach. BMC Public Health 19(1):216, 2019.

Rosenblum MA, Miller P, Reist B, Stuart EA, Thieme M, Louis TA: Adaptive design in surveys and clinical trials: similarities, differences and opportunities for cross‐fertilization. JRSS-A 182(3):963-982, 2019.

John McGready (go to top of document)

Abusamaan MS, Ballreich J, Dobs A, Kane B, Maruthur N, McGready J, Riekert K, Wanigatunga AA, Alderfer M, Alver D, Lalani B, Ringham B, Vandi F, Zade D, Mathioudakis NN: Effectiveness of artificial intelligence vs. human coaching in diabetes prevention: a study protocol for a randomized controlled trial. Trials 25(1):325, 2024.

Graham E, Thorne-Lyman AL, McGready J, Mui Y, Manohar S, Neupane S, Fanzo J, West KP Jr: Measuring community urbanicity and its influence on household food security across Nepal's agroecological zones. Curr Dev Nutr 8(6):103773, 2024.

Gavigan C, Abbey EJ, McGready J, Simonsick EM, Mammen JS: Levothyroxine dosing in older adults: recommendations derived from the Baltimore Longitudinal Study of Aging. Endocr Pract 29(8):612-617, 2023.

Kuo SE, Atayeva R, McGready J, Cooney CM, Lifchez SD: Scleroderma and Raynaud phenomenon: the cold truth regarding the use of operative management. Plast Reconstr Surg 152(2):369e-370e, 2023.

Pasqualino MM, Shaikh S, Islam MT, Parvin S, Ali H, McGready J, Labrique AB, Hossain MI, Palmer AC: Household animal ownership is associated with infant animal source food consumption in Bangladesh. Matern Child Nutr 19(3):e13495, 2023.

Pasqualino MM, Shaikh S, McGready J, Islam MT, Ali H, Ahmed T, West KP Jr, Alam M, Hossain MI, Labrique AB, Palmer AC: An egg intervention improves dietary intakes but does not fill intake gaps for multiple micronutrients among infants in rural Bangladesh. J Nutr 153(4):1199-1210, 2023.

Zale AD, Abusamaan MS, McGready J, Mathioudakis N: Prediction of next glucose measurement in hospitalized patients by comparing various regression methods: retrospective cohort study. JMIR Form Res 7:e41577, 2023.

Abbey EJ, McGready J, Oh E, Simonsick EM, Mammen JSR: Thyroid hormone use and overuse in dementia: results from the Health, Aging and Body Composition Study. J Am Geriatr Soc 70(11):3308-3311, 2022.

Abbey EJ, McGready J, Sokoll LJ, Simonsick EM, Mammen JSR: Free thyroxine distinguishes subclinical hypothyroidism from other aging-related changes in those with isolated elevated thyrotropin. Front Endocrinol 13:858332, 2022.

Zale AD, Abusamaan MS, McGready J, Mathioudakis N: Development and validation of a machine learning model for classification of next glucose measurement in hospitalized patients. EClinicalMedicine 44:101290, 2022.

Abbey EJ, McGready J, Ferrucci L, Simonsick EM, Mammen JSR: Thyroid hormone supplementation and all-cause mortality in community-dwelling older adults: results from the Baltimore Longitudinal Study of Aging. J Am Geriatr Soc 69(5):1283-1290, 2021.

Beres LK, Mody A, Sikombe K, Nicholas LH, Schwartz S, Eshun-Wilson I, Somwe P, Simbeza S, Pry JM, Kaumba P, McGready J, Holmes CB, Bolton-Moore C, Sikazwe I, Denison JA, Geng EH: The effect of tracer contact on return to care among adult, "lost to follow-up" patients living with HIV in Zambia: an instrumental variable analysis. J Int AIDS Soc 24(12):e25853, 2021.

Beres LK, Schwartz S, Simbeza S, McGready J, Eshun-Wilson I, Mwamba C, Sikombe K, Topp SM, Somwe P, Mody A, Mukamba N, Ehrenkranz PD, Padian N, Pry J, Moore CB, Holmes CB, Sikazwe I, Denison JA, Geng E: Patterns and predictors of incident return to HIV care among traced, disengaged patients in Zambia: analysis of a prospective cohort. J Acquir Immune Defic Syndr 86(3):313-322, 2021.

Hoover-Fong JE, Alade AY, Hashmi SS, Hecht JT, Legare JM, Little ME, Liu C, McGready J, Modaff P, Pauli RM, Rodriguez-Buritica DF, Schulze KJ, Serna ME, Smid CJ, Bober MB: Achondroplasia Natural History Study (CLARITY): a multicenter retrospective cohort study of achondroplasia in the United States. Genet Med 23(8):1498-1505, 2021.

Hoover-Fong JE, Schulze KJ, Alade AY, Bober MB, Gough E, Hashmi SS, Hecht JT, Legare JM, Little ME, Modaff P, Pauli RM, Rodriguez-Buritica DF, Serna ME, Smid C, Liu C, McGready J: Growth in achondroplasia including stature, weight, weight-for-height and head circumference from CLARITY: achondroplasia natural history study-a multi-center retrospective cohort study of achondroplasia in the US. Orphanet J Rare Dis 16(1):522, 2021.

Mathioudakis NN, Abusamaan MS, Shakarchi AF, Sokolinsky S, Fayzullin S, McGready J, Zilbermint M, Saria S, Golden SH: Development and validation of a machine learning model to predict near-term risk of iatrogenic hypoglycemia in hospitalized patients. JAMA Netw Open 4(1):e2030913, 2021.

Merrill KG, Campbell JC, Decker MR, McGready J, Burke VM, Mwansa JK, Miti S, Frimpong C, Kennedy CE, Denison JA: Past-year violence victimization is associated with viral load failure among HIV-positive adolescents and young adults. AIDS Behav 25(5):1373-1383, 2021.

Mustafa Ali MK, Sabha MM, Mustafa SK, Banifadel M, Ghazaleh S, Aburayyan KM, Ghanim MT, Awad MT, Gekonde DN, Ambati AR, Ramahi A, Elzanaty AM, Nesheiwat Z, Shastri PM, Al-Sarie M, McGready J: Hospitalization and post-hospitalization outcomes among teaching internal medicine, employed hospitalist, and locum tenens hospitalist services in a tertiary center: a prospective cohort study. J Gen Intern Med 36(10):3040-3051, 2021.

Beres LK, Merrill KG, McGready J, Denison JA, Schwartz S, Sikazwe I, Decker MR: Intimate partner violence polyvictimisation and HIV among coupled women in Zambia: Analysis of a population-based survey. Glob Public Health 15(4):558-570, 2020.

Hoover-Fong J, Alade AY, Ain M, Berkowitz I, Bober M, Carter E, Hecht J, Hoerschemeyer D, Krakow D, MacCarrick G, Mackenzie WG, Mendoza R, Okenfuss E, Popplewell D, Raggio C, Schulze K, McGready J: Blood pressure in adults with short stature skeletal dysplasias. Am J Med Genet A 182(1):150-161, 2020.

Merrill KG, Campbell JC, Decker MR, McGready J, Burke VM, Mwansa JK, Miti S, Frimpong C, Kennedy CE, Denison JA: Prevalence of physical and sexual violence and psychological abuse among adolescents and young adults living with HIV in Zambia. PLoS One 15(6):e0235203, 2020.

Verma S, Zegar J, Hoge C, McGready J, Sidana A: Multiparametric MRI-ultrasound fusion prostate biopsy in patients without prior diagnosis of prostate cancer: beyond centers of excellence. Aging Male 23(5):1570-1575, 2020.

Wood SN, Kennedy SR, Akumu I, Tallam C, Asira B, Hameeduddin Z, McGready J, Zimmerman LA, Kennedy CE, Glass N, Decker MR: Reproductive coercion among intimate partner violence survivors in Nairobi. Stud Fam Plann 51(4):343-360, 2020.

Babak Moghadas (go to top of document)

Moghadas B, Bharadwaj VN, Tobey JP, Tian Y, Stabenfeldt SE, Kodibagkar VD: GdDO3NI enhanced magnetic resonance imaging allows imaging of hypoxia after brain injury. J Magn Reson Imaging 55(4):1161-1168, 2022.

Veldhuizen J, Chavan R, Moghadas B, Park JG, Kodibagkar VD, Migrino RQ, Nikkhah M: Cardiac ischemia on-a-chip to investigate cellular and molecular response of myocardial tissue under hypoxia. Biomaterials 281:121336, 2022.

Moghadas B, Solouk A, Sadeghi D: Development of chitosan membrane using non-toxic crosslinkers for potential wound dressing applications. Polymer Bulletin 78: 4919-4929, 2021.

Gupta S, Singh P, Moghadas B, Grim BJ, Kodibagkar VD, Green MD: Synthesis of PEG and quaternary ammonium grafted silicone copolymers as nanoemulsifiers. ACS Applied Polymer Materials 2(5):1856-1864, 2020.

John Muschelli (go to top of document)

Leroux A, Cui E, Smirnova E, Muschelli J, Schrack JA, Crainiceanu CM: NHANES 2011-2014: Objective physical activity is the strongest predictor of all-cause mortality. Med Sci Sports Exerc 56(10):1926-1934, 2024.

Savonen C, Wright C, Hoffman AM, Muschelli J, Cox K, Tan FJ, Leek JT: Open-source Tools for Training Resources - OTTR. J Stat Data Sci Educ 31(1):57-65, 2023.

Zhao C, Tapera TM, Bagautdinova J, Bourque J, Covitz S, Gur RE, Gur RC, Larsen B, Mehta K, Meisler SL, Murtha K, Muschelli J, Roalf DR, Sydnor VJ, Valcarcel AM, Shinohara RT, Cieslak M, Satterthwaite TD: ModelArray: An R package for statistical analysis of fixel-wise data. Neuroimage 271:120037, 2023.

Karas M, Muschelli J, Leroux A, Urbanek JK, Wanigatunga AA, Bai J, Crainiceanu CM, Schrack JA: Comparison of accelerometry-based measures of physical activity: retrospective observational data analysis study. JMIR mHealth uHealth 10(7):e38077, 2022.

Pham DD, Muschelli J, Mejia AF: ciftiTools: A package for reading, writing, visualizing, and manipulating CIFTI files in R. Neuroimage 250:118877, 2022.

Qi G, Dutta D, Leroux A, Ray D, Muschelli J, Crainiceanu C, Chatterjee N: Genome-wide association studies of 27 accelerometry-derived physical activity measurements identified novel loci and genetic mechanisms. Genet Epidemiol 46(2):122-138, 2022.

Redd AD, Peetluk LS, Jarrett BA, Hanrahan C, Schwartz S, Rao A, Jaffe AE, ..., Muschelli J, et al: Curating the evidence about COVID-19 for frontline public health and clinical care: the Novel Coronavirus Research Compendium. Public Health Rep 137(2):197-202, 2022.

Sharrock MF, Mould WA, Hildreth M, Ryu EP, Walborn N, Awad IA, Hanley DF, Muschelli J: Bayesian deep learning outperforms clinical trial estimators of intracerebral and intraventricular hemorrhage volume. J Neuroimaging 32(5):968-976, 2022.

Smirnova E, Mallow C, Muschelli J, Shao Y, Thiboutot J, Lam A, Rule AM, Crainiceanu C, Yarmus L: Predictive performance of selected breath volatile organic carbon compounds in stage 1 lung cancer. Transl Lung Cancer Res 11(6):1009-1018, 2022.

Bennett TD, Moffitt RA, Hajagos JG, ..., Muschelli J, et al: Clinical characterization and prediction of clinical severity of SARS-CoV-2 infection among US adults using data from the US National COVID Cohort Collaborative. JAMA Netw Open (7):e2116901, 2021.

Bowring MG, Wang Z, Xu Y, Betz J, Muschelli J, Garibaldi BT, Zeger SL: Outcome-stratified analysis of biomarker trajectories for patients infected with severe acute respiratory syndrome coronavirus 2. Am J Epidemiol 190(10):2094-2106, 2021.

Broll S, Urbanek J, Buchanan D, Chun E, Muschelli J, Punjabi NM, Gaynanova I: Interpreting blood GLUcose data with R package iglu. PLoS One 16(4):e0248560, 2021.

Eshaghzadeh Torbati M, Minhas DS, Ahmad G, O'Connor EE, Muschelli J, Laymon CM, Yang Z, Cohen AD, Aizenstein HJ, Klunk WE, Christian BT, Hwang SJ, Crainiceanu CM, Tudorascu DL: A multi-scanner neuroimaging data harmonization using RAVEL and ComBat. Neuroimage 245:118703, 2021.

Garibaldi BT, Fiksel J, Muschelli J, Robinson ML, Rouhizadeh M, Perin J, Schumock G, Nagy P, Gray JH, Malapati H, Ghobadi-Krueger M, Niessen TM, Kim BS, Hill PM, Ahmed MS, Dobkin ED, Blanding R, Abele J, Woods B, Harkness K, Thiemann DR, Bowring MG, Shah AB, Wang MC, Bandeen-Roche K, Rosen A, Zeger SL, Gupta A: Patient trajectories among persons hospitalized for COVID-19 : a cohort study. Ann Intern Med 174(1):33-41, 2021.

Leroux A, Xu S, Kundu P, Muschelli J, Smirnova E, Chatterjee N, Crainiceanu C: Quantifying the predictive performance of objectively measured physical activity on mortality in the UK Biobank. J Gerontol A Biol Sci Med Sci 76(8):1486-1494, 2021.

Scully EP, Schumock G, Fu M, Massaccesi G, Muschelli J, Betz J, Klein EY, West NE, Robinson M, Garibaldi BT, Bandeen-Roche K, Zeger S, Klein SL, Gupta A: Sex and gender differences in testing, hospital admission, clinical presentation, and drivers of severe outcomes from COVID-19. Open Forum Infect Dis 8(9):ofab448, 2021.

Sharrock MF, Mould WA, Ali H, Hildreth M, Awad IA, Hanley DF, Muschelli J: 3D deep neural network segmentation of intracerebral hemorrhage: development and validation for clinical trials. Neuroinformatics 19(3):403-415, 2021.

Tustison NJ, Cook PA, Holbrook AJ, Johnson HJ, Muschelli J, Devenyi GA, Duda JT, Das SR, Cullen NC, Gillen DL, Yassa MA, Stone JR, Gee JC, Avants BB: The ANTsX ecosystem for quantitative biological and medical imaging. Sci Rep 11(1):9068, 2021.

Wang G, Muschelli J, Lindquist MA: Moderated t-tests for group-level fMRI analysis. Neuroimage 237:118141, 2021.

Wongvibulsin S, Garibaldi BT, Antar AAR, Wen J, Wang MC, Gupta A, Bollinger R, Xu Y, Wang K, Betz JF, Muschelli J, Bandeen-Roche K, Zeger SL, Robinson ML: Development of Severe COVID-19 Adaptive Risk Predictor (SCARP), a calculator to predict severe disease or death in hospitalized patients with COVID-19. Ann Intern Med 174(6):777-785, 2021.

Wrobel J, Muschelli J, Leroux A: Diurnal physical activity patterns across ages in a large UK based cohort: the UK Biobank study. Sensors 21(4):1545, 2021.

Gherman A, Muschelli J, Caffo B, Crainiceanu C: Rxnat: An open-source R package for XNAT-based repositories. Front Neuroinform 14:572068, 2020.

Hannawi Y, Muschelli J, Mulder M, Sharrock M, Storm C, Leithner C, Crainiceanu CM, Stevens RD: Postcardiac arrest neurological prognostication with quantitative regional cerebral densitometry. Resuscitation 154:101-109, 2020.

Hansen BM, Ullman N, Muschelli J, Norrving B, Dlugash R, Avadhani R, Awad I, Zuccarello M, Ziai WC, Hanley DF, Thompson RE, Lindgren A, MISTIE and CLEAR Investigators: Relationship of white matter lesions with intracerebral hemorrhage expansion and functional outcome: MISTIE II and CLEAR III. Neurocrit Care 33(2):516-524, 2020.

Muschelli J: ROC and AUC with a binary predictor: a potentially misleading metric. J Classif 37(3):696-708, 2020.

Rothstein JD, Caulfield LE, Broaddus-Shea ET, Muschelli J, Gilman RH, Winch PJ: "The doctor said formula would help me": Health sector influences on use of infant formula in peri-urban Lima, Peru. Soc Sci Med 244:112324, 2020.

Ryan SM, Vestal B, Maier LA, Carlson NE, Muschelli J: Template creation for high-resolution computed tomography scans of the lung in R software. Acad Radiol 27(8):e204-e215, 2020.

Valcarcel AM, Muschelli J, Pham DL, Martin ML, Yushkevich P, Brandstadter R, Patterson KR, Schindler MK, Calabresi PA, Bakshi R, Shinohara RT: TAPAS: A Thresholding Approach for Probability Map Automatic Segmentation in Multiple Sclerosis. Neuroimage Clin 27:102256, 2020.

Ding T, Cohen AD, O'Connor EE, Karim HT, Crainiceanu A, Muschelli J, Lopez O, Klunk WE, Aizenstein HJ, Krafty R, Crainiceanu CM, Tudorascu DL: An improved algorithm of white matter hyperintensity detection in elderly adults. Neuroimage Clin 25:102151, 2019.

Muschelli J: Recommendations for processing head CT data. Front Neuroinform 13:61, 2019.

Muschelli J, Gherman A, Fortin JP, Avants B, Whitcher B, Clayden JD, Caffo BS, Crainiceanu CM: Neuroconductor: an R platform for medical imaging analysis. Biostatistics 20(2):218-239, 2019.

Akihiko Nishimura (go to top of document)

Bu F, Schuemie MJ, Nishimura A, Smith LH, Kostka K, Falconer T, McLeggon JA, Ryan PB, Hripcsak G, Suchard MA: Bayesian safety surveillance with adaptive bias correction. Stat Med 43(2):395-418, 2024.

Cai CX, Nishimura A, Bowring MG, Westlund E, ..., Zeger S, et al: Similar risk of kidney failure among patients with blinding diseases who receive ranibizumab, aflibercept, and bevacizumab: an Observational Health Data Sciences and Informatics Network Study. Ophthalmol Retina 8(8):733-743, 2024.

Khera R, Aminorroaya A, Dhingra LS, Thangaraj PM, Pedroso Camargos A, Bu F, Ding X, Nishimura A, et al: Comparative effectiveness of second-line antihyperglycemic agents for cardiovascular outcomes: a multinational, federated analysis of LEGEND-T2DM. J Am Coll Cardiol 84(10):904-917, 2024.

Rosenblum M, Chin ET, Ogburn EL, Nishimura A, Westreich D, Datta A, et al: Misuse of statistical method results in highly biased interpretation of forensic evidence in Guyll et al. Law Prob Risk 23(1):mgad010, 2024.

Fisher AA, Ji X, Nishimura A, Baele G, Lemey P, Suchard MA: Shrinkage-based random local clocks with scalable inference. Mol Biol Evol 40(11):msad242, 2023.

Khera R, Dhingra LS, Aminorroaya A, Li K, Zhou JJ, ..., Nishimura A, et al: Multinational patterns of second line antihyperglycaemic drug initiation across cardiovascular risk groups: federated pharmacoepidemiological evaluation in LEGEND-T2DM. BMJ Med 2(1):e000651, 2023.

Nishimura A, Suchard MA: Prior-preconditioned conjugate gradient method for accelerated Gibbs sampling in "Large n, Large p" Bayesian sparse regression. JASA 118(544):2468-2481, 2023.

Nishimura A, Suchard MA: Shrinkage with shrunken shoulders: Gibbs sampling shrinkage model posteriors with guaranteed convergence rates. Bayesian Analysis 18(2): 367-390, 2023.

Schuemie MJ, Bu F, Nishimura A, Suchard MA: Adjusting for both sequential testing and systematic error in safety surveillance using observational data: empirical calibration and MaxSPRT. Stat Med 42(5):619-631, 2023.

Zhang Z, Nishimura A, Trovao NS, Cherry JL, Holbrook AJ, Ji X, Lemey P, Suchard MA: Accelerating Bayesian inference of dependency between mixed-type biological traits. PLoS Comput Biol 19(8):e1011419, 2023.

Nishimura A, Xie J, Kostka K, Duarte-Salles T, et al: International cohort study indicates no association between alpha-1 blockers and susceptibility to COVID-19 in benign prostatic hyperplasia patients. Front Pharmacol 13:945592, 2022.

Wang Z, Bowring MG, Rosen A, Garibaldi B, Zeger S, Nishimura A: Learning and predicting from dynamic models for COVID-19 patient monitoring. Stat Sci 37(2):251-265, 2022.

Koenecke A, Powell M, Xiong R, Shen Z, Fischer N, Huq S, Khalafallah AM, Trevisan M, Sparen P, Carrero JJ, Nishimura A, Caffo B, Stuart EA, Bai R, Staedtke V, Thomas DL, Papadopoulos N, Kinzler KW, Vogelstein B, Zhou S, Bettegowda C, Konig MF, Mensh BD, Vogelstein JT, Athey S: Alpha-1 adrenergic receptor antagonists to prevent hyperinflammation and death from lower respiratory tract infection. Elife 10:e61700, 2021.

Powell M, Koenecke A, Byrd JB, Nishimura A, Konig MF, Xiong R, Mahmood S, Mucaj V, Bettegowda C, Rose L, Tamang S, Sacarny A, Caffo B, Athey S, Stuart EA, Vogelstein JT: Ten rules for conducting retrospective pharmacoepidemiological analyses: example COVID-19 study. Front Pharmacol 12:700776, 2021.

Zhang Z, Nishimura A, Bastide P, Ji X, Payne RP, Goulder P, Lemey P, Suchard MA: Large-scale inference of correlation among mixed-type biological traits with phylogenetic multivariate probit models. Ann Appl Stat 15(1):230-251, 2021.

Duan LL, Young AL, Nishimura A, Dunson DB: Bayesian constraint relaxation. Biometrika 107(1):191-204, 2020.

Ji X, Zhang Z, Holbrook A, Nishimura A, Baele G, Rambaut A, Lemey P, Suchard MA: Gradients do grow on trees: a linear-time O(N)-dimensional gradient for statistical phylogenetics. Mol Biol Evol 37(10):3047-3060, 2020.

Nishimura A, Dunson D: Recycling intermediate steps to improve Hamiltonian Monte Carlo. Bayesian Analysis 15(4):1087-1108, 2020.

Nishimura A, Dunson DB, Lu J: Discontinuous Hamiltonian Monte Carlo for discrete parameters and discontinuous likelihoods. Biometrika 107(2):365-380, 2020.

Daniel Obeng (go to top of document)

Ermer J, Aguiar D, Boden A, Ding B, Obeng D, Rose M, Vokrot J: Lifecycle management in pharmaceutical analysis: how to establish an efficient and relevant continued performance monitoring program. J Pharm Biomed Anal 181:113051, 2020.

Elizabeth Ogburn (go to top of document)

Nguyen TQ, Stuart EA, Scharfstein DO, Ogburn EL: Sensitivity analysis for principal ignorability violation in estimating complier and noncomplier average causal effects. Stat Med 43(19):3664-3688, 2024.

Ogburn EL, Sofrygin O, Diaz I, van der Laan MJ: Causal inference for social network data. JASA 119(545):597-611, 2024.

Rosenblum M, Chin ET, Ogburn EL, Nishimura A, Westreich D, Datta A, et al: Misuse of statistical method results in highly biased interpretation of forensic evidence in Guyll et al. Law Prob Risk 23(1):mgad010, 2024.

Avolio LN, Smith TJS, Navas-Acien A, Kruczynski K, Pisanic N, Randad PR, Detrick B, Fry RC, van Geen A, Goessler W, Karron RA, Klein SL, Ogburn EL, et al: The Pregnancy, Arsenic, and Immune Response (PAIR) Study in rural northern Bangladesh. Paediatr Perinat Epidemiol 37(2):165-178, 2023.

Lee Y, Buchanan AL, Ogburn EL, Friedman SR, Halloran ME, Katenka NV, Wu J, Nikolopoulos GK: Finding influential subjects in a network using a causal framework. Biometrics 79(4):3715-3727, 2023.

Miao W, Hu W, Ogburn EL, Zhou XH: Identifying effects of multiple treatments in the presnece of unmeasured confounding. JASA 119(543):1953-1967, 2023.

Casey JA, Kioumourtzoglou MA, Ogburn EL, Melamed A, Shaman J, Kandula S, Neophytou A, Darwin KC, Sheffield JS, Gyamfi-Bannerman C: Long-term fine particulate matter concentrations and prevalence of severe acute respiratory syndrome coronavirus 2: differential relationships by socioeconomic status among pregnant individuals in New York City. Am J Epidemiol 191(11):1897-1905, 2022.

Di Stefano L, Ogburn EL, Ram M, Scharfstein DO, Li T, et al: Hydroxychloroquine/chloroquine for the treatment of hospitalized patients with COVID-19: An individual participant data meta-analysis. PLoS One 17(9):e0273526, 2022.

Ogburn EL, Cai J, Kuchibhotla AK, Berk RA, Buja A: Contribution to the discussion of 'Assumption-lean inference for generalised linear model parameters' by Vansteelandt and Dukes. JRSS-B 84(3):715-716, 2022.

Thorpe LE, Adhikari S, Lopez P, ..., Ogburn EL, et al: Neighborhood socioeconomic environment and risk of type 2 diabetes: associations and mediation through food environment pathways in three independent study samples. Diabetes Care 45(4):798-810, 2022.

Clipman SJ, Mehta SH, Srikrishnan AK, Zook KJ, Duggal P, Mohapatra S, Shanmugam S, Nandagopal P, Kumar MS, Ogburn E, Lucas GM, Latkin CA, Solomon SS: Role of direct and indirect social and spatial ties in the diffusion of HIV and HCV among people who inject drugs: A cross-sectional community-based network analysis in New Delhi, India. Elife 10:e69174, 2021.

Haendel MA, Chute CG, Bennett TD, ..., N3C Consortium (includes Ogburn E): The National COVID Cohort Collaborative (N3C): Rationale, design, infrastructure, and deployment. J Am Med Inform Assoc 28(3):427-443, 2021.

Lee Y, Ogburn EL: Network dependence can lead to spurious associations and invalid inference. JASA 116(535):1060-1074, 2021.

Ogburn EL, Rudolph KE, Morello-Frosch R, Khan A, Casey JA: A warning about using predicted values from regression models for epidemiologic inquiry. Am J Epidemiol 190(6):1142-1147, 2021.

Ogburn EL, Shpitser I: Causal modelling: the two cultures. Observational Studies 7(1):179-183, 2021.

Kimmel SE, Califf RM, Dean NE, Goodman SN, Ogburn EL: Editorial: COVID-19 clinical trials: a teachable moment for improving our research infrastructure and relevance. Ann Intern Med 173(8):652-653, 2020.

Ogburn EL, Bierer BE, Brookmeyer R, Choirat C, Dean NE, De Gruttola V, Ellenberg SS, Halloran ME, Hanley DF Jr, Lee JK, Wang R, Scharfstein DO: Comment: Aggregating data from COVID-19 trials. Science 368(6496):1198-1199, 2020.

Ogburn EL, Shpitser I, Lee Y: Causal inference, social networks and chain graphs. JRSS-A 183(4):1659-1676, 2020.

Solomon SS, Solomon S, McFall AM, Srikrishnan AK, Anand S, Verma V, Vasudevan CK, Balakrishnan P, Ogburn EL, Moulton LH, Kumar MS, Sachdeva KS, Laeyendecker O, Celentano DD, Lucas GM, Mehta SH, Indian National Collaboration on AIDS Study: Integrated HIV testing, prevention, and treatment intervention for key populations in India: a cluster-randomised trial. Lancet HIV 6(5):e283-e296, 2019.

Wang B, Ogburn EL, Rosenblum M: Analysis of covariance in randomized trials: More precision and valid confidence intervals, without model assumptions. Biometrics 75(4):1391-1400, 2019.

Chathurangi Pathiravasan (go to top of document)

Ellenbogen MI, Marine JE, Arbab-Zadeh A, Pathiravasan CH, Swann J, Brotman DJ: Relationship between insurance status and receipt of cardiac tests and procedures during hospitalization: a cross-sectional study. J Am Heart Assoc 13(19):e035797, 2024.

Kishan A, Pearson ZC, Li SS, Pressman Z, Ahiarakwe U, Pathiravasan CH, Srikumaran U: How low can we go? a randomized controlled trial of low-quantity initial opioid prescriptions for shoulder surgery. J Shoulder Elbow Surg 33(6):1211-1218, 2024.

Lee J, Wang X, Liu C, Pathiravasan CH, Benjamin EJ, McManus DD, Murabito JM: Depressive symptoms are not associated with clinically important levels of digital home blood pressure in the electronic Framingham Heart Study. Cardiovasc Digit Health J 5(2):50-58, 2024.

Spartano NL, Zhang Y, Liu C, Chernofsky A, Lin H, Trinquart L, Borrelli B, Pathiravasan CH, Kheterpal V, Nowak C, Vasan RS, Benjamin EJ, McManus DD, Murabito JM: Agreement between Apple watch and Actical step counts in a community setting: cross-sectional investigation from the Framingham Heart Study. JMIR Biomed Eng 9:e54631, 2024.

Wang X, Zhang Y, Pathiravasan CH, Ukonu NC, Rong J, Benjamin EJ, McManus DD, Larson MG, Vasan RS, Hamburg NM, Murabito JM, Liu C, Mitchell GF: Association of arterial stiffness with mid- to long-term home blood pressure variability in the Electronic Framingham Heart Study: Cohort Study. JMIR Cardio 8:e54801, 2024.

Zhang Y, Wang X, Pathiravasan CH, Spartano NL, Lin H, Borrelli B, Benjamin EJ, McManus DD, Larson MG, Vasan RS, Shah RV, Lewis GD, Liu C, Murabito JM, Nayor M: Association of smartwatch-based heart rate and physical activity with cardiorespiratory fitness measures in the community: cohort study. J Med Internet Res 26:e56676, 2024.

Shapira-Daniels A, Kornej J, Spartano NL, Wang X, Zhang Y, Pathiravasan CH, Liu C, Trinquart L, Borrelli B, McManus DD,