[Project title] =TPMAT [CEL directory] =/data1/hji/projects/tileprobe_project/mouseprom/ALLCEL/ [BPMAP directory] =/data1/hji/projects/tileprobe_project/mouseprom/ [GenomeGrp] =Mm [Include Probes not in GenomeGrp] = 0 [Working directory] =/data1/hji/projects/tileprobe_project/mouseprom/TPMAT_OBPMAP/ [No. of Libraries] = 1 [Libraries] Mm_PromPR_v02-1_NCBIv36.NR.bpmap [No. of Samples] = 109 [Arrays] >1 060504_ChIP_GliAct_EB.CEL >2 060504_Input_EB.CEL >3 060516_ChIP_Gli3T_5_10.CEL >4 060516_ChIP_Gli3T_5_8.CEL >5 060516_Input_Gli3T_5_11.CEL >6 060516_Input_Gli3T_5_8.CEL >7 060605_ChIP_Gli1_4_10.CEL >8 060605_ChIP_Gli1_4_11.CEL >9 060605_ChIP_Gli1_5_22.CEL >10 060605_Input_Gli1_4_10.CEL >11 060605_Input_Gli1_4_11.CEL >12 060605_Input_Gli1_5_22.CEL >13 060926_ChIP_Ant_Input.CEL >14 060926_ChIP_Ant_K27.CEL >15 060926_ChIP_Ant_K4.CEL >16 060926_ChIP_Ant_PanH3.CEL >17 060926_ChIP_Post_Input.CEL >18 060926_ChIP_Post_K27.CEL >19 060926_ChIP_Post_K4.CEL >20 060926_ChIP_Post_PanH3.CEL >21 061006_ChIP_Ant_Input.CEL >22 061006_ChIP_Ant_K27.CEL >23 061006_ChIP_Ant_K4.CEL >24 061006_ChIP_Ant_PanH3.CEL >25 061006_ChIP_Post_Input.CEL >26 061006_ChIP_Post_K27.CEL >27 061006_ChIP_Post_K4.CEL >28 061006_ChIP_Post_PanH3.CEL >29 3meH3K27_1.CEL >30 3meH3K27_2.CEL >31 3meH3K27_3.CEL >32 3meH3K4_1.CEL >33 3meH3K4_2.CEL >34 3meH3K4_3.CEL >35 abMyc_1.CEL >36 abMyc_2.CEL >37 abMyc_3.CEL >38 abNanog_1.CEL >39 abNanog_2.CEL >40 abNanog_3.CEL >41 bDax1_1.CEL >42 bDax1_2.CEL >43 bDax1_3.CEL >44 bDax1_4.CEL >45 BirA_1.CEL >46 BirA_2.CEL >47 BirA_3.CEL >48 BirA_4.CEL >49 bKlf4_1.CEL >50 bKlf4_2.CEL >51 bKlf4_3.CEL >52 bKlf4_4.CEL >53 bKlf4_5.CEL >54 bKlf4_6.CEL >55 bKlf4_7.CEL >56 bKlf4_8.CEL >57 bMyc_1.CEL >58 bMyc_2.CEL >59 bMyc_3.CEL >60 bNac1_1.CEL >61 bNac1_2.CEL >62 bNac1_3.CEL >63 bNanog_1.CEL >64 bNanog_2.CEL >65 bNanog_3.CEL >66 bOct4_1.CEL >67 bOct4_2.CEL >68 bOct4_3.CEL >69 bRex1_1.CEL >70 bRex1_2.CEL >71 bRex1_3.CEL >72 bRex1_4.CEL >73 bRex1_5.CEL >74 bRex1_6.CEL >75 bSox2_1.CEL >76 bSox2_2.CEL >77 bSox2_3.CEL >78 bSox2_4.CEL >79 bSox2_5.CEL >80 bZfp281_1.CEL >81 bZfp281_2.CEL >82 bZfp281_3.CEL >83 Input_BirAJ1_1.CEL >84 Input_BirAJ1_2.CEL >85 Input_BirAJ1_3.CEL >86 Input_BirAJ1_4.CEL >87 Input_J1_1.CEL >88 Input_J1_2.CEL >89 Input_J1_3.CEL >90 GSM291520_SRFChIP_Input.CEL >91 GSM291521_SRFChIP_IP.CEL >92 GSM310416_preB_1_MmProm.CEL >93 GSM310416_preB_2_MmProm.CEL >94 GSM310416_preB_3_MmProm.CEL >95 GSM310417_MLLAF4_1_MmProm.CEL >96 GSM310417_MLLAF4_2_MmProm.CEL >97 GSM310417_MLLAF4_3_MmProm.CEL >98 GSM310418_MLLAF4-224_MmProm.CEL >99 GSM310418_MLLAF4-226_MmProm.CEL >100 GSM310418_MLLAF4-227_MmProm.CEL >101 GSM310418_MLLAF4-228_MmProm.CEL >102 GSM310418_MLLAF4-654_MmProm.CEL >103 GSM310418_MLLAF4-992_MmProm.CEL >104 GSM228764_IgG_1.CEL >105 GSM228764_IgG_2.CEL >106 GSM228764_IgG_3.CEL >107 GSM228764_PU.1_1.CEL >108 GSM228764_PU.1_2.CEL >109 GSM228764_PU.1_3.CEL [Remove masked cells in the CEL files] (1:yes; 0:no) = 0 [Remove outlier cells in the CEL files] (1:yes; 0:no) = 0