[Project title] =REST_norm
[CEL directory] =C:\Users\jihk\rest\
[BPMAP directory] =D:\Data\bpmap\human_tiling2.0_hg17\
[Working directory] =C:\Users\jihk\rest\analysis\
[No. of Libraries] = 7
[Libraries]
Hs35b_P01R_v01_NCBIv35.bpmap
Hs35b_P02R_v01_NCBIv35.bpmap
Hs35b_P03R_v01_NCBIv35.bpmap
Hs35b_P04R_v01_NCBIv35.bpmap
Hs35b_P05R_v01_NCBIv35.bpmap
Hs35b_P06R_v01_NCBIv35.bpmap
Hs35b_P07R_v01_NCBIv35.bpmap
[No. of Samples] = 4
[Arrays]
>IP1
Johnson_IP364AMP(120506)_Hs35b_P01R_v01.CEL
Johnson_IP364AMP(120506)_Hs35b_P02R_v01.CEL
Johnson_IP364AMP(120506)_Hs35b_P03R_v01.CEL
Johnson_IP364AMP(120506)_Hs35b_P04R_v01.CEL
Johnson_IP364AMP(120506)_Hs35b_P05R_v01.CEL
Johnson_IP364AMP(120506)_Hs35b_P06R_v01.CEL
Johnson_IP364AMP(120506)_Hs35b_P07R_v01.CEL
>IP2
Johnson_IP369AMP(120506)_Hs35b_P01R_v01.CEL
Johnson_IP369AMP(120506)_Hs35b_P02R_v01.CEL
Johnson_IP369AMP(120506)_Hs35b_P03R_v01.CEL
Johnson_IP369AMP(120506)_Hs35b_P04R_v01.CEL
Johnson_IP369AMP(120506)_Hs35b_P05R_v01.CEL
Johnson_IP369AMP(120506)_Hs35b_P06R_v01.CEL
Johnson_IP369AMP(120506)_Hs35b_P07R_v01.CEL
>CT1
Johnson_Jurkat-Mock-10(091806)_Hs35b_P01R_v01.CEL
Johnson_Jurkat-Mock-10(091806)_Hs35b_P02R_v01.CEL
Johnson_Jurkat-Mock-10(091806)_Hs35b_P03R_v01.CEL
Johnson_Jurkat-Mock-10(091806)_Hs35b_P04R_v01.CEL
Johnson_Jurkat-Mock-10(091806)_Hs35b_P05R_v01.CEL
Johnson_Jurkat-Mock-10(091806)_Hs35b_P06R_v01.CEL
Johnson_Jurkat-Mock-10(091806)_Hs35b_P07R_v01.CEL
>CT2
Johnson_Jurkat-Mock-7(091806)_Hs35b_P01R_v01.CEL
Johnson_Jurkat-Mock-7(091806)_Hs35b_P02R_v01.CEL
Johnson_Jurkat-Mock-7(091806)_Hs35b_P03R_v01.CEL
Johnson_Jurkat-Mock-7(091806)-Rerun_Hs35b_P04R_v01.CEL
Johnson_Jurkat-Mock-7(091806)_Hs35b_P05R_v01.CEL
Johnson_Jurkat-Mock-7(091806)_Hs35b_P06R_v01.CEL
Johnson_Jurkat-Mock-7(091806)_Hs35b_P07R_v01.CEL
[Remove masked cells in the CEL files] (1:yes; 0:no) = 0
[Remove outlier cells in the CEL files] (1:yes; 0:no) = 0
[Apply normalization before computing intensity] (1:yes; 0:no) = 1
[Truncation lower bound before normalization] = 1.000000
[Take log2 transformation before normalization] (1:yes; 0:no) = 1
[How to compute intensity] (0: PM only, 1: PM-MM) = 0
[Truncation lower bound after intensity computation] = -1000000.000000
[Take log2 transformation after intensity computation] (1:yes; 0:no) = 0
[Output mode] (0: multiple BAR, 1: single BAR, 2: single TXT) = 0