Tutorial 2: ChIP-Seq Data Analysis


Since its original publication, CisGenome ChIP-seq peak calling algorithm has been upgraded to a new version. If your experiment has both IP and control (e.g. input, mock, etc.) samples, we recommend you to read the tutorial for the new peak calling procedure:

             SeqPeak (CisGenome v2) tutorial

The new procedure can handle experiments with biological/technical replicates.


If you only have IP samples without any control sample, or if you have both IP and control but still want to use the old peak calling algorithm, please follow the link below:

             ChIP-seq Peak Calling (CisGenome v1) tutorial