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 Biostatistics 140.654
 Methods in Biostatistics IV

  Department of Biostatistics, Johns Hopkins Bloomberg School of Public Health

 

Date

Class  

Lecture Topic Reading  
Assignment

Tues
Mar 25
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1 Background to Generalized linear models 
  • Weighted least squares
  • Robust variance estimation
  • Weighted least squares
  • Robust variance estimation
  • Model building
  • Motivation: Why more than linear regression
Weisberg
  §5.1; Ch. 7
 
Thurs
Mar 27
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2 Introduction to Generalized linear models
  • Overview
  • Formulation/link functions
  • Maximum likelihood estimation, inference
  • Deviance
FEH Ch. 9;
Article:
  McCullagh
Tues
Apr 1
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3 Logistic regression: description
  • The logistic function
  • Parameter interpretation:
    • Simple
    • Multiple: Main, interactions
  • Nonlinear / smooth curves
  • Grouped, individual models
FEH Ch10.1
Thurs
Apr 3
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4 Multiple logistic regression -- fitting & inference
  • ML fitting
    • Iteratively reweighted least squares
  • Wald inference
  • Inference using nested models, deviances
  • Deviance test distribution
FEH Ch 10.2-3
Tues
Apr 8
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5 Multiple logistic regression -- model diagnosis
  • Goodness of fit
  • Leverage and influence
  • Residual checking
  • Case Study, part I
FEH Ch 10.4-7
Thurs
Apr 10
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6 Multiple logistic regression: prediction; extended models
  • Sensitivity/Specificity
  • Receiver Operating Characteristic (ROC) curve
  • Polytomous, ordinal logistic regression
FEH Ch 10.8-9, 13; Articles (ROC)
Tues
Apr 15
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7 Model building
  • Method overview
  • Bias/variance tradeoff: AIC, BIC
  • Case Study
FEH Ch 11
Thurs
Apr 17 
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8 Analysis of Event Counts: Poisson regression
  • Poisson regression
  • Negative binomial regression
Article
Tues
Apr 22
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9 Case-control studies
  • Odds ratio equivalence
  • Unmatched fitting, interpretation
  • Example
H&L Ch 6;
Article
Thurs
Apr 24 
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10 Matched case-control studies
  • Setup: nuisance parameters
  • Conditional logistic regression
  • Fitting/Inference
H&L Ch 7;
Article
Tues
Apr 29
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11 Cohort study analysis
  • Incidence: beyond the logit link/collapsibility
  • Censoring
  • Rate/Cohort studies with Poisson regression
Article
Thurs
May 1
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12 Review  
Tues
May 6
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13 EXAM  
Thurs
May 8
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14 Loglinear models
  • Model
  • Interpretation
Article
Tues
May 13
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15 Loglinear models
  • Estimation
  • Hierarchical framework
Article
Thurs
May 15
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16 Causality versus association
  • Paradigms defining causality
  • Potential outcomes
  • Propensity scoring

 

Articles:
   Holland; Rubin

  • FEH: Harrell, F.E. (2001), Regression Modeling Strategies, With Applications to Linear Models, Logistic Regression, and Survival Analysis, New York: Springer.

  • SW: Weisberg S. (1985), Applied Linear Regression, 2nd. Ed., New York: John Wiley & Sons


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 Last edited: 01 April, 2008

 

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            Johns Hopkins Bloomberg School of Public Health
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