Download

Download CisGenomev1.2                           (Older versions: v1.1, v1)

CisGenome Windows (GUI, Browser and Core Programs All incluced)

Download CisGenomev1.2                            (Older versions: v1.1, v1)

CisGenome Mac OS (Core Programs Only)

Download CisGenome v1.2                           (Older versions: v1.1, v1)

CisGenome Linux (Core Programs Only)

Human: hg19 (NOTE: no phastCons conservation score available at this time for hg19)

             hg18, hg17

Mouse: mm9, mm8 (Windows Self Extractable), mm8

Dog: canFam2

Cow: bosTau4

Chicken: galGal3

Zebrafish: danRer5 (NOTE: no phastCons conservation score available at this time)

             danRer4

Fly (D. melanogaster): dm3

Worm (C. elegans): ce6

Yeast (S. cerevisiae): sacCer1

Arabidopsis: TAIR9, TAIR8

             TAIR7 (NOTE: Bugs may exist in TAIR7. Using TAIR8 or TAIR9 for analysis is              recommended).

Genome Database

HUMAN

Human Genome Tiling 1.0R (14 array set): hg19, hg18

Human Genome Tiling 2.0R (7 array set): hg19, hg18

Human Promoter 1.0R: hg19, hg18

ENCODE 2.0R: hg19, hg18

 

MOUSE

Mouse Genome Tiling 2.0R (7 array set): mm9, mm8

Mouse Promoter 1.0R: mm9, mm8

 

FLY (D. melanogaster)

Drosophila Tiling 1.0R: dm3

Drosophila Tiling 2.0R: dm3

 

Worm (C. elegans)

C. elegans Tiling 1.0R: ce6

 

YEAST (S. cerevisiae)

S. cerevisiae Tiling 1.0R: sacCer1

 

ARABIDOPSIS

Arabidopsis Tiling 1.0R: TAIR9, TAIR8, TAIR7

 

 

Affymetrix Tiling Array Library Files (BPMAP files)

  

(Note: To be fully consistent with CisGenome infrastructure, using BPMAP files  downloaded from this website is recommended.)

DATA

SOFTWARE

(source code and executables)

NRSF ChIP-seq Data (from Johnson et al., Science, 316:1497-1502, 2007, Human hg17)

STAT1 ChIP-seq Data (from Robertson et al., Nature Methods, 4:651-657, 2007, Human hg18): stimulated, unstimulated

Sample Data