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CisGenome Windows (GUI, Browser and Core Programs All incluced)

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CisGenome Mac OS (Core Programs Only)

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CisGenome Linux (Core Programs Only)

Human: hg18, hg17

Mouse: mm9, mm8 (Windows Self Extractable), mm8

Fly (D. melanogaster): dm3

Arabidopsis: TAIR7 (NOTE: Arabidopsis genome database is currently under testing. Bugs exist. Please do not use it for analyses that you want to publish until this NOTE is removed).

Yeast (S. cerevisiae): sacCer1

Genome Database

HUMAN

Human Genome Tiling 1.0R (14 array set): hg18

Human Genome Tiling 2.0R (7 array set): hg18

Human Promoter 1.0R: hg18

ENCODE 2.0R: hg18

 

MOUSE

Mouse Genome Tiling 2.0R (7 array set): mm9, mm8

Mouse Promoter 1.0R: mm9, mm8

 

FLY (D. melanogaster)

Drosophila Tiling 1.0R: dm3

Drosophila Tiling 2.0R: dm3

 

ARABIDOPSIS

Arabidopsis Tiling 1.0R: TAIR7

 

YEAST (S. cerevisiae)

S. cerevisiae Tiling 1.0R: sacCer1

Affymetrix Tiling Array Library Files (BPMAP files)

  

(Note: To be fully consistent with CisGenome infrastructure, using BPMAP files  downloaded from this website is recommended.)

DATA

SOFTWARE

(source code and executables)

NRSF ChIP-seq Data (from Johnson et al., Science, 316:1497-1502, 2007)

Sample Data