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Welcome to CisGenome!
(An integrated tool for tiling array, ChIP-seq, genome and cis-regulatory element analysis) |
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Mirror Sites: CisGenome @ Hopkins: http://www.biostat.jhsph.edu/~hji/cisgenome/ CisGenome @ Stanford: http://biogibbs.stanford.edu/~jihk/CisGenome/index.htm
News: 11/02/2008: The paper describing CisGenome is published by Nature Biotechnology today. If you need to cite CisGenome in your own work, please refer to this paper [Link]. 11/02/2008: User manual page has been updated. Several commonly used analysis pipelines are listed for users who wish to run CisGenome as command line programs. 07/23/2008: Support for yeast genome has been added. 07/22/2008: Mouse mm9 genome database has been released. 04/10/2008: A function has been added under the “Genome” menu to summarize pairwise overlap among multiple lists of genomic regions. 03/23/2008: CisGenome can now support ChIP-seq data analysis. A collection of functions has been added and can be accessed under the “Sequencing” menu. Usage information can be found in the tutorials. |
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Copyright, 2007 – 08, The Johns Hopkins University. All Rights reserved.
Permission granted to download and use CisGenome for non-commercial research use only. No further distribution or copying for commercial use permitted without express written consent. Contact Hongkai Ji, Ph.D., Assistant Professor, Email: hji@jhsph.edu. |
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The three core components of CisGenome |
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What can I do with CisGenome? |
