Biostatistics - Johns Hopkins Bloomberg School of Public Health

Department of Biostatistics

People

Prospective Students

Academics

Research

News & Events

Calendar

Consulting

Employment Opportunities

Resource Quicklinks

Computing Environment

Contact

SELECTED RECENT ARTICLES BY:

Karen Bandeen-Roche (go to top of document)

Bandeen-Roche K, Walston JD, Huang Y, Semba RD, Ferrucci L: Measuring systemic inflammatory regulation in older adults: evidence and utility. Rejuvenation Research 12(6):403-10, 2009.

Boyd CM, Ricks M, Fried LP, Guralnik JM, Xue QL, Xia J, Bandeen-Roche K: Functional decline and recovery of activities of daily living in hospitalized, disabled older women: the Women's Health and Aging Study I. Journal of the American Geriatrics Society 57(10):1757-66, 2009.

Bandeen-Roche K, Glass TA, Bolla KI, Todd AC, Schwartz BS: Cumulative lead dose and cognitive function in older adults. Epidemiology 20(6):831-9, 2009.

Nestadt G, Di CZ, Riddle MA, Grados MA, Greenberg BD, Fyer AJ, McCracken JT, Rauch SL, Murphy DL, Rasmussen SA, Cullen B, Pinto A, Knowles JA, Piacentini J, Pauls DL, Bienvenu OJ, Wang Y, Liang KY, Samuels JF, Roche KB: Obsessive-compulsive disorder: subclassification based on co-morbidity. Psychological Medicine 39(9):1491-501, 2009.

Fried LP, Xue QL, Cappola AR, Ferrucci L, Chaves P, Varadhan R, Guralnik JM, Leng SX, Semba RD, Walston JD, Blaum CS, Bandeen-Roche K: Nonlinear multisystem physiological dysregulation associated with frailty in older women: implications for etiology and treatment. Journals of Gerontology Series A 64(10):1049-57, 2009.

Brandt J, Aretouli E, Neijstrom E, Samek J, Manning K, Albert MS, Bandeen-Roche K: Selectivity of executive function deficits in mild cognitive impairment. Neuropsychology 23(5):607-18, 2009.

Keay L, Jasti S, Munoz B, Turano KA, Munro CA, Duncan DD, Baldwin K, Bandeen-Roche KJ, Gower EW, West SK: Urban and rural differences in older drivers' failure to stop at stop signs. Accident; Analysis and Prevention 41(5):995-1000, 2009.

Sherrill JT, Sommers DI, Nierenberg AA, Leon AC, Arndt S, Bandeen-Roche K, Greenhouse J, Guthrie D, Normand SL, Phillips KA, Shear MK, Woolson R: Integrating statistical and clinical research elements in intervention-related grant applications: summary from an NIMH workshop. Academic Psychiatry 33(3):221-8, 2009.

Mielke MM, Kozauer NA, Chan KC, George M, Toroney J, Zerrate M, Bandeen-Roche K, Wang MC, Vanzijl P, Pekar JJ, Mori S, Lyketsos CG, Albert M: Regionally-specific diffusion tensor imaging in mild cognitive impairment and Alzheimer's disease. NeuroImage 46(1):47-55, 2009.

Riley AW, Coiro MJ, Broitman M, Colantuoni E, Hurley KM, Bandeen-Roche K, Miranda J: Mental health of children of low-income depressed mothers: influences of parenting, family environment, and raters. Psychiatric Services 60(3):329-36, 2009.

Langbaum JB, Rebok GW, Bandeen-Roche K, Carlson MC: Predicting memory training response patterns: results from ACTIVE. Journals of Gerontology Series B 64(1):14-23, 2009.

Glass TA, Bandeen-Roche K, McAtee M, Bolla K, Todd AC, Schwartz BS: Neighborhood psychosocial hazards and the association of cumulative lead dose with cognitive function in older adults. American Journal of Epidemiology 169(6):683-92, 2009.

Szanton SL, Allen JK, Seplaki CL, Bandeen-Roche K, Fried LP: Allostatic load and frailty in the Women's Health and Aging Studies. Biological Research for Nursing 10(3):248-56, 2009.

Szanton SL, Allen JK, Thorpe RJ Jr, Seeman T, Bandeen-Roche K, Fried LP: Effect of financial strain on mortality in community-dwelling older women. Journals of Gerontology Series B 63(6):S369-74, 2008.

Varadhan R, Seplaki CL, Xue QL, Bandeen-Roche K, Fried LP: Stimulus-response paradigm for characterizing the loss of resilience in homeostatic regulation associated with frailty. Mechanisms of Ageing and Development 129(11):666-70, 2008.

Xue QL, Bandeen-Roche K, Varadhan R, Zhou J, Fried LP: Initial manifestations of frailty criteria and the development of frailty phenotype in the Women's Health and Aging Study II. Journals of Gerontology Series A 63(9):984-90, 2008.

St. Julien J, Bandeen-Roche K, Tamargo RJ: Validation of an aneurysmal subarachnoid hemorrhage grading scale in 1532 consecutive patients. Neurosurgery 63(2):204-211, 2008.

Kozachik SL, Bandeen-Roche K: Predictors of patterns of pain, fatigue, and insomnia during the first year after a cancer diagnosis in the elderly. Cancer Nursing 31(5):334-44, 2008.

Swihart BJ, Caffo B, Bandeen-Roche K, Punjabi NM: Characterizing sleep structure using the hypnogram. Journal of Clinical Sleep Medicine 4(4):349-55, 2008.

Theppeang K, Glass TA, Bandeen-Roche K, Todd AC, Rohde CA, Links JM, Schwartz BS: Associations of bone mineral density and lead levels in blood, tibia, and patella in urban-dwelling women. Environmental Health Perspectives 116(6):784-90, 2008.

Theppeang K, Glass TA, Bandeen-Roche K, Todd AC, Rohde CA, Schwartz BS: Gender and race/ethnicity differences in lead dose biomarkers. American Journal of Public Health 98(7):1248-55, 2008.

Matteini AM, Walston JD, Fallin MD, Bandeen Roche K, Kao WH, Semba RD, Allen RH, Guralnik J, Fried LP, Stabler SP: Markers of B-vitamin deficiency and frailty in older women. Journal of Nutrition, Health and Aging 12(5):303-8, 2008.

Bandeen-Roche K, Ning J: Nonparametric estimation of bivariate failure time associations in the presence of a competing risk. Biometrika 95(1):221-232, 2008.

Broman AT, Quigley HA, West SK, Katz J, Munoz B, Bandeen-Roche K, Tielsch JM, Friedman DS, Crowston J, Taylor HR, Varma R, Leske MC, Bengtsson B, Heijl A, He M, Foster PJ: Estimating the rate of progressive visual field damage in those with open-angle glaucoma, from cross-sectional data. Investigative Ophthalmology and Visual Science 49(1):66-76, 2008.

Broman AT, Congdon NG, Bandeen-Roche K, Quigley HA: Influence of corneal structure, corneal responsiveness, and other ocular parameters on tonometric measurement of intraocular pressure. Journal of Glaucoma 16(7):581-588, 2007.

Zhang L, Baldwin K, Munoz B, Munro C, Turano K, Hassan S, Lyketsos C, Bandeen-Roche K, West SK: Visual and cognitive predictors of performance on brake reaction test: Salisbury Eye Evaluation Driving Study. Ophthalmic Epidemiology 14(4):216-22, 2007.

Alley DE, Crimmins E, Bandeen-Roche K, Guralnik J, Ferrucci L: Three-year change in inflammatory markers in elderly people and mortality: the Invecchiare in Chianti Study. Journal of the American Geriatrics Society 55(11):1801-7, 2007.

Lee BK, Glass TA, McAtee MJ, Wand GS, Bandeen-Roche K, Bolla KI, Schwartz BS: Associations of salivary cortisol with cognitive function in the Baltimore memory study. Archives of General Psychiatry 64(7):810-8, 2007.

Rubin GS, Ng ES, Bandeen-Roche K, Keyl PM, Freeman EE, West SK: A prospective, population-based study of the role of visual impairment in motor vehicle crashes among older drivers: the SEE Study. Investigative Ophthalmology and Visual Science 48(4):1483-91, 2007.

Weiss CO, Fried LP, Bandeen-Roche K: Exploring the hierarchy of mobility performance in high-functioning older women. Journals of Gerontology Series A 62(2):167-73, 2007.

Rao KD, Peters DH, Bandeen-Roche K: Towards patient-centered health services in India--a scale to measure patient perceptions of quality. International Journal for Quality in Health Care 18(6):414-21, 2006.

Shih RA, Glass TA, Bandeen-Roche K, Carlson MC, Bolla KI, Todd AC, Schwartz BS: Environmental lead exposure and cognitive function in community-dwelling older adults. Neurology 67(9):1556-62, 2006.

Glenn BS, Bandeen-Roche K, Lee BK, Weaver VM, Todd AC, Schwartz BS: Changes in systolic blood pressure associated with lead in blood and bone. Epidemiology 17(5):538-44, 2006.

Asao K, Kao WH, Baptiste-Roberts K, Bandeen-Roche K, Erlinger TP, Brancati FL: Short stature and the risk of adiposity, insulin resistance, and type 2 diabetes in middle age: the third National Health and Nutrition Examination Survey (NHANES III), 1988-1994. Diabetes Care 29(7):1632-7, 2006.

Ling SM, Xue QL, Simonsick EM, Tian J, Bandeen-Roche K, Fried LP, Bathon JM: Transitions to mobility difficulty associated with lower extremity osteoarthritis in high functioning older women: Longitudinal data from the Women's Health and Aging Study II. Arthritis and Rheumatism 55(2):256-63, 2006.

Bandeen-Roche K, Xue QL, Ferrucci L, Walston J, Guralnik JM, Chaves P, Zeger SL, Fried LP: Phenotype of frailty: characterization in the Women's Health and Aging Studies. Journals of Gerontology Series A 61(3):262-6, 2006.

Congdon NG, Broman AT, Bandeen-Roche K, Grover D, Quigley HA: Central corneal thickness and corneal hysteresis associated with glaucoma damage. American Journal of Ophthalmology 141(5):868-75, 2006.

Martin D, Glass TA, Bandeen-Roche K, Todd AC, Shi W, Schwartz BS: Association of blood lead and tibia lead with blood pressure and hypertension in a community sample of older adults. American Journal of Epidemiology 163(5):467-78, 2006.

Patel I, Turano KA, Broman AT, Bandeen-Roche K, Munoz B, West SK: Measures of visual function and percentage of preferred walking speed in older adults: the Salisbury Eye Evaluation project. Investigative Ophthalmology and Visual Science 47(1):65-71, 2006.

Freeman EE, Egleston BL, West SK, Bandeen-Roche K, Rubin G: Visual acuity change and mortality in older adults. Investigative Ophthalmology and Visual Science 46(11):4040-5, 2005.

West SK, Munoz B, Rubin GS, Bandeen-Roche K, Broman AT, Turano KA: Compensatory strategy use identifies risk of incident disability for the visually impaired. Archives of Ophthalmology 123(9):1242-7, 2005.

Wang CP, Brown CH, Bandeen-Roche K: Residual diagnostics for growth mixture models: examining the impact of a preventive intervention on multiple trajectories of aggressive behavior. Journal of the American Statistical Association 100(471):1054-1076, 2005.

Chen MC, Bandeen-Roche K: Diagnostics for association in bivariate survival models. Lifetime Data Analysis 11(2):245-264, 2005.

Leng S, Xue QL, Huang Y, Semba R, Chaves P, Bandeen-Roche K, Fried L, Walston J: Total and differential white blood cell counts and their associations with circulating interleukin-6 levels in community-dwelling older women. Journals of Gerontology Biological Sciences and Medical Sciences 60(2):195-9, 2005.

Han B, Phillips C, Ferrucci L, Bandeen-Roche K, Jylha M, Kasper J, Guralnik JM: Change in self-rated health and mortality among community-dwelling disabled older women. Gerontologist 45(2):216-21, 2005.

Clayman ML, Roter D, Wissow LS, Bandeen-Roche K: Autonomy-related behaviors of patient companions and their effect on decision-making activity in geriatric primary care visits. Social Science and Medicine 60(7):1583-91, 2005.

Schwartz BS, Lee BK, Bandeen-Roche K, Stewart W, Bolla K, Links J, Weaver V, Todd A: Occupational lead exposure and longitudinal decline in neurobehavioral test scores. Epidemiology 16(1):106-13, 2005.

Roche KM, Mekos D, Alexander CS, Astone NM, Bandeen-Roche K, Ensminger ME: Parenting influences on early sex initiation among adolescents: how neighborhood matters. Journal of Family Issues 26(1):32-54, 2005.

Huang GH, Bandeen-Roche K: Latent class regression with covariate effects on underlying and measured variables. Psychometrika 69(1):5-32, 2004.

Menard CB, Bandeen-Roche KJ, Chilcoat HD: Epidemiology of multiple childhood traumatic events: child abuse, parental psychopathology, and other family-level stressors. Social Psychiatry and Psychiatric Epidemiology 39(11):857-865, 2004.

Broman AT, West SK, Munoz B, Bandeen-Roche K, Rubin GS, Turano KA: Divided visual attention as a predictor of bumping while walking: the Salisbury Eye Evaluation. Investigative Ophthalmology and Vision Science 45(9):2955-60, 2004.

Frick KD, Scanlon DP, Bandeen-Roche K, Kasper JD, Simonsick EM, Sullivan EM: Influenza vaccination by race among disabled community dwelling older women. Journal of Health Care for the Poor and Underserved 15(2):220-36, 2004.

Turano KA, Broman AT, Bandeen-Roche K, Munoz B, Rubin GS, West S; SEE Project Team: Association of visual field loss and mobility performance in older adults: Salisbury Eye Evaluation Study. Optometry and Vision Science 81(5):298-307, 2004.

Schwartz BS, Glass TA, Bolla KI, Stewart WF, Glass G, Rasmussen M, Bressler J, Shi W, Bandeen-Roche K: Disparities in cognitive functioning by race/ethnicity in the Baltimore Memory Study. Environmental Health Perspectives 112(3):314-320, 2004.

Ron Brookmeyer (go to top of document)

Reich NG, Lessler J, Cummings DA, Brookmeyer R: Estimating incubation period distributions with coarse data. Statistics in Medicine 28(22):2769-84, 2009.

Hayden KM, Zandi PP, West NA, Tschanz JT, Norton MC, Corcoran C, Breitner JC, Welsh-Bohmer KA, Cache County Study Group (includes Brookmeyer R): Effects of family history and apolipoprotein E epsilon4 status on cognitive decline in the absence of Alzheimer dementia: the Cache County Study. Archives of Neurology 66(11):1378-83, 2009.

Welsh-Bohmer KA, Ostbye T, Sanders L, Pieper CF, Hayden KM, Tschanz JT, Norton MC, Cache County Study Group (includes Brookmeyer R): Neuropsychological performance in advanced age: influences of demographic factors and Apolipoprotein E: findings from the Cache County Memory Study. Clinical Neuropsychologist 23(1):77-99, 2009.

Lessler J, Reich NG, Brookmeyer R, Perl TM, Nelson KE, Cummings DA: Incubation periods of acute respiratory viral infections: a systematic review. Lancet Infectious Diseases 9(5):291-300, 2009.

Brookmeyer R: Should biomarker estimates of HIV incidence be adjusted? AIDS 23(4):485-91, 2009.

Karon JM, Song R, Brookmeyer R, Kaplan EH, Hall HI: Estimating HIV incidence in the United States from HIV/AIDS surveillance data and biomarker HIV test results. Statistics in Medicine 27(23):4617-33, 2008.

Ziegler-Graham K, Brookmeyer R, Johnson E, Arrighi HM: Worldwide variation in the doubling time of Alzheimer's disease incidence rates. Alzheimer's & Dementia 4(5):316-23, 2008.

Hall HI, Song R, Rhodes P, Prejean J, An Q, Lee LM, Karon J, Brookmeyer R, Kaplan EH, McKenna MT, Janssen RS, HIV Incidence Surveillance Group: Estimation of HIV incidence in the United States. Journal of the American Medical Association 300(5):520-9, 2008.

Six Week Extended-Dose Nevirapine (SWEN) Study Team (includes Brookmeyer R), Bedri A, Gudetta B, Isehak A, Kumbi S, Lulseged S, Mengistu Y, Bhore AV, Bhosale R, Varadhrajan V, Gupte N, Sastry J, Suryavanshi N, Tripathy S, Mmiro F, Mubiru M, Onyango C, Taylor A, Musoke P, Nakabiito C, Abashawl A, Adamu R, Antelman G, Bollinger RC, Bright P, Chaudhary MA, Coberly J, Guay L, Fowler MG, Gupta A, Hassen E, Jackson JB, Moulton LH, Nayak U, Omer SB, Propper L, Ram M, Rexroad V, Ruff AJ, Shankar A, Zwerski S: Extended-dose nevirapine to 6 weeks of age for infants to prevent HIV transmission via breastfeeding in Ethiopia, India, and Uganda: an analysis of three randomised controlled trials. Lancet 372(9635):300-13, 2008.

Corrada MM, Brookmeyer R, Berlau D, Paganini-Hill A, Kawas CH: Prevalence of dementia after age 90: results from the 90+ study. Neurology 71(5):337-43, 2008.

Norton MC, Singh A, Skoog I, Corcoran C, Tschanz JT, Zandi PP, Breitner JC, Welsh-Bohmer KA, Steffens DC, Cache County Investigators (includes Brookmeyer R): Church attendance and new episodes of major depression in a community study of older adults: the Cache County Study. Journals of Gerontology B 63(3):P129-37, 2008.

Crawford SO, Reich NG, An MW, Brookmeyer R, Louis TA, Nelson KE, Notari EP, Trouern-Trend J, Zou S: Regional and temporal variation in American Red Cross blood donations, 1995 to 2005. Transfusion 48(8):1576-1583, 2008.

Ziegler-Graham K, MacKenzie EJ, Ephraim PL, Travison TG, Brookmeyer R: Estimating the prevalence of limb loss in the United States: 2005 to 2050. Archives of Physical Medicine and Rehabilitation 89(3):422-9, 2008.

Steinberg M, Shao H, Zandi P, Lyketsos CG, Welsh-Bohmer KA, Norton MC, Breitner JC, Steffens DC, Tschanz JT, Cache County Investigators (includes Brookmeyer R): Point and 5-year period prevalence of neuropsychiatric symptoms in dementia: the Cache County Study. International Journal of Geriatric Psychiatry 23(2):170-7, 2008.

Johnson E, Brookmeyer R, Ziegler-Graham K: Modeling the effect of Alzheimer's disease on mortality. International Journal of Biostatistics 3(1):Article 13, 2007.

Lessler J, Brookmeyer R, Perl TM: An evaluation of classification rules dased on date of symptom onset to identify health-care associated infections. American Journal of Epidemiology 166(10):1220-9, 2007.

Travison TG, Brookmeyer R: Global effects estimation for multidimensional outcomes. Statistics in Medicine 26(27):4845-4859, 2007.

Gupte N, Sastry J, Brookmeyer R, Phadke MA, Bhosale RA, Bollinger RC, BJ Medical College-National AIDS Research Institute-Johns Hopkins University Mother-to-Child Study Group: Declining HIV infection rates among recently married primigravid women in Pune, India. Journal of Acquired Immune Deficiency Syndromes 45(5):570-3, 2007.

Mehendale SM, Gupte N, Paranjape RS, Brahme RG, Kohli R, Joglekar N, Godbole SV, Joshi SN, Ghate MV, Sahay S, Kumar BK, Gangakhedkar RR, Risbud AR, Brookmeyer RS, Bollinger RC: Declining HIV incidence among patients attending sexually transmitted infection clinics in Pune, India. Journal of Acquired Immune Deficiency Syndromes 45(5):564-9, 2007.

Gupte N, Brookmeyer R, Bollinger R, Gray G: Modeling maternal-infant HIV transmission in the presence of breastfeeding with an imperfect test. Biometrics 63(4):1189-97, 2007.

Cole SR, Chu H, Brookmeyer R: Confidence intervals for biomarker-based human immunodeficiency virus incidence estimates and differences using prevalent data. American Journal of Epidemiology 165(1):94-100, 2007.

Brookmeyer R, Johnson E, Ziegler-Graham K, Arrighi HM: Forecasting the global burden of Alzheimer's disease. Alzheimer's & Dementia 3(3):186-191, 2007.

Brookmeyer R, You X: A hypothesis test for the end of a common source outbreak. Biometrics 62(1):61-5, 2006.

Blot WJ, Ibrahim MA, Ivey TD, Acheson DE, Brookmeyer R, Weyman A, Defauw J, Smith JK, Harrison D: Twenty-five-year experience with the Bjork-Shiley convexoconcave heart valve: a continuing clinical concern. Circulation 111(21):2850-7, 2005.

Brookmeyer R: Editorial: Biosecurity and the role of statisticians. Journal of the Royal Statistical Society-A 168(2):263-266, 2005.

Brookmeyer R, Johnson E, Barry S: Modelling the incubation period of anthrax. Statistics in Medicine 24(4):531-542, 2005.

Brookmeyer R, Johnson E, Bollinger R: Public health vaccination policies for containing an anthrax outbreak. Nature 432(7019):901-4, 2004.

Yasar S, Corrada M, Brookmeyer R, Kawas C: Calcium channel blockers and risk of AD: the Baltimore Longitudinal Study of Aging. Neurobiology of Aging 26(2):157-63, 2005.

Reynolds SJ, Shepherd ME, Risbud AR, Gangakhedkar RR, Brookmeyer RS, Divekar AD, Mehendale SM, Bollinger RC: Male circumcision and risk of HIV-1 and other sexually transmitted infections in India. Lancet 363(9414):1039-40, 2004.

Frangakis CE, Brookmeyer RS, Varadhan R, Safaeian M, Vlahov D, Strathdee SA: Methodology for evaluating a partially controlled longitudinal treatment using principal stratification, with application to a needle exchange program. Journal of the American Statistical Association 99(465):239-249, 2004.

Brian Caffo (go to top of document)

Caffo B, Swihart B, Laffan A, Crainiceanu C, Punjabi N: An overview of observational sleep research with application to sleep stage transitioning. Chance 22(1):10-15, 2009.

Lauzon C, Caffo B: Easy multiplicity control in equivalence testing using two one-sided tests. The American Statistician 63(2):147-154, 2009.

Crainiceanu CM, Caffo BS, Di CZ, Punjabi NM: Nonparametric signal extraction and measurement error in the analysis of electroencephalographic activity during sleep. Journal of the American Statistical Association 104(486):541-555, 2009.

Yousem DM, Yassa MA, Cristinzio C, Kusevic I, Mohamed M, Caffo BS, Bassett SS: Intelligence and medial temporal lobe function in older adults: a functional MR imaging-based investigation. American Journal of Neuroradiology 30(8):1477-81, 2009.

Mostofsky SH, Powell SK, Simmonds DJ, Goldberg MC, Caffo B, Pekar JJ: Decreased connectivity and cerebellar activity in autism during motor task performance. Brain 132(Pt 9):2413-25, 2009.

Punjabi NM, Caffo BS, Goodwin JL, Gottlieb DJ, Newman AB, O'Connor GT, Rapoport DM, Redline S, Resnick HE, Robbins JA, Shahar E, Unruh ML, Samet JM: Sleep-disordered breathing and mortality: a prospective cohort study. PLoS Medicine 6(8):e1000132, 2009.

Reich DS, Smith SA, Gordon-Lipkin EM, Ozturk A, Caffo BS, Balcer LJ, Calabresi PA: Damage to the optic radiation in multiple sclerosis is associated with retinal injury and visual disability. Archives of Neurology 66(8):998-1006, 2009.

O'Connor GT, Caffo B, Newman AB, Quan SF, Rapoport DM, Redline S, Resnick HE, Samet J, Shahar E: Prospective study of sleep-disordered breathing and hypertension: the Sleep Heart Health Study. American Journal of Respiratory and Critical Care Medicine 179(12):1159-64, 2009.

Chen S, Wang C, Eberly LE, Caffo BS, Schwartz BS: Adaptive control of the false discovery rate in voxel-based morphometry. Human Brain Mapping 30(7):2304-11, 2009.

Caffo BS, Liu D, Scharpf RB, Parmigiani G: Likelihood estimation of conjugacy relationships in linear models with applications to high-throughput genomics. International Journal of Biostatistics 5(1):Article 18, 2009.

Di C, Crainiceanu CM, Caffo BS, Punjabi NM: Multilevel functional principal component analysis. Annals of Applied Statistics 3(1): 458-488, 2009.

Su SC, Caffo B, Garrett-Mayer E, Bassett SS: Modified test statistics by inter-voxel variance shrinkage with an application to fMRI. Biostatistics 10(2):219-27, 2009.

Caffo B, Crainiceanu CM, Deng L, Hendrix CW: A case study in pharmacologic colon imaging using principal curves in single-photon emission computed tomography. Journal of the American Statistical Association 103(484): 1470-1480, 2008.

He X, Caffo BS, Frey EC: Toward realistic and practical ideal observer (IO) estimation for the optimization of medical imaging systems. IEEE Transactions on Medical Imaging 27(10):1535-43, 2008.

Swihart BJ, Caffo B, Bandeen-Roche K, Punjabi NM: Characterizing sleep structure using the hypnogram. Journal of Clinical Sleep Medicine 4(4):349-55, 2008.

Stamatakis K, Sanders MH, Caffo B, Resnick HE, Gottlieb DJ, Mehra R, Punjabi NM: Fasting glycemia in sleep disordered breathing: lowering the threshold on oxyhemoglobin desaturation. Sleep 31(7):1018-24, 2008.

Redgrave GW, Bakker A, Bello NT, Caffo BS, Coughlin JW, Guarda AS, McEntee JE, Pekar JJ, Reinblatt SP, Verduzco G, Moran TH: Differential brain activation in anorexia nervosa to Fat and Thin words during a Stroop task. Neuroreport 19(12):1181-1185, 2008.

Choi L, Caffo B, Rohde C: A survey of the likelihood approach to bioequivalence trials. Statistics in Medicine 27(24):4874-4894, 2008.

Cao YJ, Ndovi TT, Parsons TL, Guidos AM, Caffo B, Hendrix CW: Effect of semen sampling frequency on seminal antiretroviral drug concentration. Clinical Pharmacology and Therapeutics 83(6):848-56, 2008.

Scharfstein DO, Ryea JL, Caffo B: Accounting for within-patient correlation in assessing relative sensitivity of an adjunctive diagnostic test: application to lung cancer. Statistics in Medicine 27(12):2110-26, 2008.

Guilarte TR, Hammoud DA, McGlothan JL, Caffo BS, Foss CA, Kozikowski AP, Pomper MG: Dysregulation of glutamate carboxypeptidase II in psychiatric disease. Schizophrenia Research 99(1-3):324-32, 2008.

Cao YJ, Caffo B, Choi L, Radebaugh CL, Fuchs EJ, Hendrix CW: Noninvasive quantitation of drug concentration in prostate and seminal vesicles: improvement and validation with desipramine and aspirin. Journal of Clinical Pharmacology 48(2):176-83, 2008.

Caffo B, Chen S, Stewart W, Bolla K, Yousem D, Davatzikos C, Schwartz BS: Are brain volumes based on magnetic resonance imaging mediators of the associations of cumulative lead dose with cognitive function? American Journal of Epidemiology 167(4):429-37, 2008.

Zhang L, Samet J, Caffo B, Bankman I, Punjabi NM: Power spectral analysis of EEG activity during sleep in cigarette smokers. Chest 133(2):427-32, 2008.

Bowman FD, Caffo B, Bassett SS, Kilts C: A Bayesian hierarchical framework for spatial modeling of fMRI data. Neuroimage 39(1):146-56, 2008.

Choi L, Caffo B, Rohde C, Ndovi TT, Hendrix CW: A mechanistic latent variable model for estimating drug concentrations in the male genital tract: A case study in drug kinetics. Statistics in Medicine 27(14):2697-2714, 2007.

Choi L, Caffo B, Rohde C: Optimal sampling times in bioequivalence studies using a simulated annealing algorithm. Statistics and Computing 17(4):337-347, 2007.

Schwartz BS, Chen S, Caffo B, Stewart WF, Bolla KI, Yousem D, Davatzikos C: Relations of brain volumes with cognitive function in males 45 years and older with past lead exposure. Neuroimage 37(2):633-41, 2007.

Li X, Caffo B, Scharfstein D: On the potential for illogic with logically defined outcomes. Biostatistics 8(4):800-4, 2007.

Caffo B, An MW, Rohde C: Flexible random intercept models for binary outcomes using mixtures of normals. Computational Statistics & Data Analysis 51(11):5220-5235, 2007.

Ndovi TT, Parsons T, Choi L, Caffo B, Rohde C, Hendrix CW: A new method to estimate quantitatively seminal vesicle and prostate gland contributions to ejaculate. British Journal of Clinical Pharmacology 63(4):404-420, 2007.

Caffo B: Exact hypothesis tests for log-linear models with exactLoglinTest. Journal of Statistical Software 17(7), 2006.

Jones GL, Haran M, Caffo BS, Neath R: Fixed-width output analysis for Markov chain Monte Carlo. Journal of the American Statistical Association 101(476):1537-1547, 2006.

Ndovi TT, Choi L, Caffo B, Parsons T, Baker S, Zhao M, Rohde C, Hendrix CW: Quantitative assessment of seminal vesicle and prostate drug concentrations by use of a noninvasive method. Clinical Pharmacology and Therapeutics 80(2):146-58, 2006.

Zhang L, Samet J, Caffo B, Punjabi NM: Cigarette smoking and nocturnal sleep architecture. American Journal of Epidemiology 164(6):529-37, 2006.

Bassett SS, Yousem DM, Cristinzio C, Kusevic I, Yassa MA, Caffo BS, Zeger SL: Familial risk for Alzheimer's disease alters fMRI activation patterns. Brain 129(Pt 5):1229-1239, 2006.

Caffo B, Griswold M: A user-friendly introduction to link-probit-normal models. The American Statistician 60(2):139-145, 2006.

Caffo BS, Jank W, Jones GL: Ascent-based Monte Carlo expectation-maximization. Journal of the Royal Statistical Society-B 67(2):235-251, 2005.

Agresti A, Caffo B, Ohman P: Examples in which misspecification of a random effects distribution reduces efficiency, and possible remedies. Computational Statistics and Data Analysis 47(3):639-653, 2004.

Elizabeth Colantuoni (Johnson) (go to top of document)

Berkow LC, Greenberg RS, Kan KH, Colantuoni E, Mark LJ, Flint PW, Corridore M, Bhatti N, Heitmiller ES: Need for emergency surgical airway reduced by a comprehensive difficult airway program. Anesthesia and Analgesia 109(6):1860-9, 2009.

Boin F, Franchini S, Colantuoni E, Rosen A, Wigley FM, Casciola-Rosen L: Independent association of anti-beta(2)-glycoprotein I antibodies with macrovascular disease and mortality in scleroderma patients. Arthritis and Rheumatism 60(8):2480-89, 2009.

Easley RB, Mulreany DG, Lancaster CT, Custer JW, Fernandez-Bustamante A, Colantuoni E, Simon BA: Redistribution of pulmonary blood flow impacts thermodilution-based extravascular lung water measurements in a model of acute lung injury. Anesthesiology 111(5):1065-74, 2009.

Joffe A, McNeely C, Colantuoni E, An MW, Wang W, Scharfstein D: Evaluation of school-based smoking-cessation interventions for self-described adolescent smokers. Pediatrics 124(2):e187-94, 2009.

Haut ER, Chang DC, Pierce CA, Colantuoni E, Efron DT, Haider AH, Cornwell EE 3rd, Pronovost PJ: Predictors of posttraumatic deep vein thrombosis (DVT): hospital practice versus patient factors-an analysis of the National Trauma Data Bank (NTDB). Journal of Trauma 66(4):994-9, 2009.

Newhouse RP, Morlock L, Pronovost P, Colantuoni E, Johantgen M: Rural hospital nursing: Better environments = shared vision and quality/safety engagement. Journal of Nursing Administration 39(4):189-95, 2009.

Pronovost PJ, Colantuoni E: Measuring preventable harm: helping science keep pace with policy. Journal of the American Medical Association 301(12):1273-5, 2009.

Magill SS, Swoboda SM, Shields CE, Colantuoni EA, Fothergill AW, Merz WG, Lipsett PA, Hendrix CW: The epidemiology of Candida colonization and invasive candidiasis in a surgical intensive care unit where fluconazole prophylaxis is utilized: follow-up to a randomized clinical trial. Annals of Surgery 249(4):657-65, 2009.

Riley AW, Coiro MJ, Broitman M, Colantuoni E, Hurley KM, Bandeen-Roche K, Miranda J: Mental health of children of low-income depressed mothers: influences of parenting, family environment, and raters. Psychiatric Services 60(3):329-36, 2009.

Ramirez DW, Schuette JJ, Knight V, Johnson E, Denise J, Walker AR: Necessity of routine pelvic radiograph in the pediatric blunt trauma patient. Clinical Pediatrics 47(9):935-40, 2008.

Ziegler-Graham K, Brookmeyer R, Johnson E, Arrighi HM: Worldwide variation in the doubling time of Alzheimer's disease incidence rates. Alzheimer's & Dementia 4(5):316-23, 2008.

Lutwama F, Serwadda R, Mayanja-Kizza H, Shihab HM, Ronald A, Kamya MR, Thomas D, Johnson E, Quinn TC, Moore RD, Spacek LA: Evaluation of dynabeads and cytospheres compared with flow cytometry to enumerate CD4+ T cells in HIV-infected Ugandans on antiretroviral therapy. Journal of Acquired Immune Deficiency Syndromes 48(3):297-303, 2008.

Colantuoni C, Hyde TM, Mitkus S, Joseph A, Sartorius L, Aguirre C, Creswell J, Johnson E, Deep-Soboslay A, Herman MM, Lipska BK, Weinberger DR, Kleinman JE: Age-related changes in the expression of schizophrenia susceptibility genes in the human prefrontal cortex. Brain Structure and Function 213(1-2):255-71, 2008.

Carvalho R, Johnson E, Kozlosky M, Scheimann AO: Clinical profile of the overweight child in the new millennium. Clinical Pediatrics 47(5):476-82, 2008.

Chong RY, Uhart M, McCaul ME, Johnson E, Wand GS: Whites have a more robust hypothalamic-pituitary-adrenal axis response to a psychological stressor than blacks. Psychoneuroendocrinology 33(2):246-54, 2008.

Dosreis S, Johnson E, Steinwachs D, Rohde C, Skinner EA, Fahey M, Lehman AF: Antipsychotic treatment patterns and hospitalizations among adults with schizophrenia. Schizophrenia Research 101(1-3):304-11, 2008.

Johnson E, Brookmeyer R, Ziegler-Graham K: Modeling the effect of Alzheimer's disease on mortality. International Journal of Biostatistics 3(1):Article 13, 2007.

Belcher HME, Watkins K, Johnson E, Ialongo N: Early Head Start: Factors associated with caregiver knowledge of child development, parenting behavior, and parenting stress. NHSA Dialog 10(1):6-19, 2007.

Wand GS, Oswald LM, McCaul ME, Wong DF, Johnson E, Zhou Y, Kuwabara H, Kumar A: Association of amphetamine-induced striatal dopamine release and cortisol responses to psychological stress. Neuropsychopharmacology 32(11):2310-20, 2007.

Aina-Mumuney AJ, Althaus JE, Henderson JL, Blakemore MC, Johnson EA, Graham EM: Intrapartum electronic fetal monitoring and the identification of systemic fetal inflammation. Journal of Reproductive Medicine 52(9):762-8, 2007.

Dickler HB, Fang D, Heinig SJ, Johnson E, Korn D: New physician-investigators receiving National Institutes of Health research project grants: a historical perspective on the "endangered species". Journal of the American Medical Association 297(22):2496-501, 2007.

Brookmeyer R, Johnson E, Ziegler-Graham K, Arrighi HM: Forecasting the global burden of Alzheimer's disease. Alzheimer's & Dementia 3(3):186-191, 2007.

Magill SS, Swoboda SM, Johnson EA, Merz WG, Pelz RK, Lipsett PA, Hendrix CW: The association between anatomic site of Candida colonization, invasive candidiasis, and mortality in critically ill surgical patients. Diagnostic Microbiology and Infectious Disease 55(4):293-301, 2006.

Silva AM, Smith RN, Lehmann CU, Johnson EA, Holcroft CJ, Graham EM: Neonatal nucleated red blood cells and the prediction of cerebral white matter injury in preterm infants. Obstetrics and Gynecology 107(3):550-556, 2006.

Gurewitsch ED, Johnson E, Hamzehzadeh S, Allen RH: Risk factors for brachial plexus injury with and without shoulder dystocia. American Journal of Obstetrics and Gynecology 194(2):486-92, 2006.

Miller RG, Ashar BH, Cohen J, Camp M, Coombs C, Johnson E, Schneyer CR: Disparities in osteoporosis screening between at-risk African-American and white women. Journal of General Internal Medicine 20(9):847-51, 2005.

Newhouse RP, Johantgen M, Pronovost PJ, Johnson E: Perioperative nurses and patient outcomes--mortality, complications, and length of stay. AORN Journal 81(3):508-9, 513-22, 525-8, 2005.

Jampel HD, Parekh P, Johnson E, Miller R: Chart documentation by general physicians of the glaucoma medications taken by their patients. American Journal of Ophthalmology 140(2):344-5, 2005.

Price LB, Johnson E, Vailes R, Silbergeld E: Fluoroquinolone-resistant campylobacter isolates from conventional and antibiotic-free chicken products. Environmental Health Perspectives 113(5):557-60, 2005.

Jampel HD, Parekh P, Johnson E, Robin AL, Miller RB: Preferences for eye drop characteristics among glaucoma specialists: a willingness-to-pay analysis. Journal of Glaucoma 14(2):151-156, 2005.

Brookmeyer R, Johnson E, Barry S: Modelling the incubation period of anthrax. Statistics in Medicine 24(4):531-542, 2005.

Brookmeyer R, Johnson E, Bollinger R: Public health vaccination policies for containing an anthrax outbreak. Nature 432(7019):901-4, 2004.

Ciprian Crainiceanu (go to top of document)

Gardner RM, Nyland JF, Evans SL, Wang SB, Doyle KM, Crainiceanu CM, Silbergeld EK: Mercury induces an unopposed inflammatory response in human peripheral blood mononuclear cells in vitro. Environmental Health Perspectives 117(12):1932-8, 2009.

Caffo B, Swihart B, Laffan A, Crainiceanu C, Punjabi N: An overview of observational sleep research with application to sleep stage transitioning. Chance 22(1):10-15, 2009.

Crainiceanu CM, Caffo BS, Di CZ, Punjabi NM: Nonparametric signal extraction and measurement error in the analysis of electroencephalographic activity during sleep. Journal of the American Statistical Association 104(486):541-555, 2009.

Luo S, Crainiceanu CM, Louis TA, Chatterjee N: Bayesian inference for smoking cessation with a latent cure state. Biometrics 65(3):970-8, 2009.

Cheng YJ, Crainiceanu CM: Cox models with smooth functional effect of covariates measured with error. Journal of the American Statistical Association 104(487):1144-1154, 2009.

Navas-Acien A, Umans JG, Howard BV, Goessler W, Francesconi KA, Crainiceanu CM, Silbergeld EK, Guallar E: Urine arsenic concentrations and species excretion patterns in American Indian communities over a 10-year period: the Strong Heart Study. Environmental Health Perspectives 117(9):1428-33, 2009.

Di C, Crainiceanu CM, Caffo BS, Punjabi NM: Multilevel functional principal component analysis. Annals of Applied Statistics 3(1): 458-488, 2009.

Caffo B, Crainiceanu CM, Deng L, Hendrix CW: A case study in pharmacologic colon imaging using principal curves in single-photon emission computed tomography. Journal of the American Statistical Association 103(484): 1470-1480, 2008.

Greven S, Crainiceanu CM, Kuchenhoff H, Peters A: Restricted likelihood ratio testing for zero variance components in linear mixed models. Journal of Computational and Graphical Statistics 17(4): 870-891, 2008.

Luo S, Crainiceanu CM, Louis TA, Chatterjee N: Analysis of smoking cessation patterns using a stochastic mixed-effects model With a latent cured state. Journal of the American Statistical Association 103(483):1002-1013, 2008.

Crainiceanu CM, Dominici F: Adjustment uncertainty in effect estimation. Biometrika 95(3):635-651, 2008.

Dominici F, Wang C, Crainiceanu C, Parmigiani G: Model selection and health effect estimation in environmental epidemiology. Epidemiology 19(4):558-60, 2008.

Krivobokova T, Crainiceanu CM, Kauermann G: Fast adaptive penalized splines. Journal of Computational and Graphical Statistics 17(1):1-20, 2008.

Crainiceanu CM, Diggle PJ, Rowlingson B: Bivariate binomial spatial modeling of Loa loa prevalence in tropical Africa (with discussion). Journal of the American Statistical Association 103(481):21-37, 2008.

Tellez-Plaza M, Navas-Acien A, Crainiceanu CM, Guallar E: Cadmium exposure and hypertension in the 1999-2004 National Health and Nutrition Examination Survey (NHANES). Environmental Health Perspectives 116(1):51-6, 2008.

Korzeniewska A, Crainiceanu CM, Kus R, Franaszczuk PJ, Crone NE: Dynamics of event-related causality in brain electrical activity. Human Brain Mapping 29(10):1170-1192, 2007.

Crainiceanu CM, Ruppert D, Carroll RJ, Joshi A, Goodner B: Spatially adaptive Bayesian penalized splines with heteroscedastic errors. Journal of Computational and Graphical Statistics 16(2):265-288, 2007.

Selvin E, Crainiceanu CM, Brancati FL, Coresh J: Short-term variability in measures of glycemia and implications for the classification of diabetes. Archives of Internal Medicine 167(14):1545-51, 2007.

Kottgen A, Russell SD, Loehr LR, Crainiceanu CM, Rosamond WD, Chang PP, Chambless LE, Coresh J: Reduced kidney function as a risk factor for incident heart failure: the Atherosclerosis Risk in Communities (ARIC) Study. Journal of the American Society of Nephrology 18(4):1307-15, 2007.

Crainiceanu CM, Vogelsang TJ: Nonmonotonic power for tests of a mean shift in a time series. Journal of Statistical Computation and Simulation 77(6):457-476, 2007.

Gimenez O, Crainiceanu C, Barbraud C, Jenouvrier S, Morgan BJ: Semiparametric regression in capture-recapture modeling. Biometrics 62(3):691-8, 2006.

Crainiceanu CM, Ruppert D, Wand MP: Bayesian analysis for penalized spline regression using WinBUGS. Journal of Statistical Software 14(14), 2005.

Sinai A, Bowers CW, Crainiceanu CM, Boatman D, Gordon B, Lesser RP, Lenz FA, Crone NE: Electrocorticographic high gamma activity versus electrical cortical stimulation mapping of naming. Brain 128(Pt 7):1556-70, 2005.

Crainiceanu C, Ruppert D, Claeskens G, Wand MP: Exact likelihood ratio tests for penalised splines. Biometrika 92(1):91-103, 2005.

Carroll RJ, Ruppert D, Crainiceanu CM, Tosteson TD, Karagas MR: Nonlinear and nonparametric regression and instrumental variables. Journal of the American Statistical Association 99(467):736-750, 2004.

Crainiceanu CM, Ruppert D: Restricted likelihood ratio tests in nonparametric longitudinal models. Statistica Sinica 14(3): 713-729, 2004.

Crainiceanu CM, Ruppert D: Likelihood ratio tests for goodness-of-fit of a nonlinear regression model. Journal of Multivariate Analysis 91(1):35-52, 2004.

Crainiceanu CM, Ruppert D: Likelihood ratio tests in linear mixed models with one variance component. Journal of the Royal Statistical Society-B 66(1):165-185, 2004.

Frank Curriero (go to top of document)

Torio CM, Klassen AC, Curriero FC, Caballero B, Helzlsouer K: The modifying effect of social class on the relationship between body mass index and breast cancer incidence. American Journal of Public Health 100(1):146-51, 2010.

Uscher-Pines L, Vernick JS, Curriero F, Lieberman R, Burke TA: Disaster-related injuries in the period of recovery: the effect of prolonged displacement on risk of injury in older adults. Journal of Trauma 67(4):834-40, 2009.

Lowther SA, Curriero FC, Kalish BT, Shields TM, Monze M, Moss WJ: Population immunity to measles virus and the effect of HIV-1 infection after a mass measles vaccination campaign in Lusaka, Zambia: a cross-sectional survey. Lancet 373(9668):1025-32, 2009.

Lowther SA, Curriero FC, Shields T, Ahmed S, Monze M, Moss WJ: Feasibility of satellite image-based sampling for a health survey among urban townships of Lusaka, Zambia. Tropical Medicine and International Health 14(1):70-8, 2009.

Neff RA, Curriero FC, Burke TA: Just in the wrong place...?: Geographic tools for occupational injury/illness surveillance. American Journal of Industrial Medicine 51(9):680-690, 2008.

Sapkota AR, Curriero FC, Gibson KE, Schwab KJ: Antibiotic-resistant enterococci and fecal indicators in surface water and groundwater impacted by a concentrated swine feeding operation. Environmental Health Perspectives 115(7):1040-5, 2007.

Schwab KJ, Gibson KE, Williams DL, Kulbicki KM, Lo CP, Mihalic JN, Breysse PN, Curriero FC, Geyh AS: Microbial and chemical assessment of regions within New Orleans, LA impacted by Hurricane Katrina. Environmental Science & Technology 41(7):2401-6, 2007.

Graczyk TK, Lewis EJ, Glass G, Dasilva AJ, Tamang L, Girouard AS, Curriero FC: Quantitative assessment of viable Cryptosporidium parvum load in commercial oysters (Crassostrea virginica) in the Chesapeake Bay. Parasitology Research 100(2):247-53, 2007.

Curriero FC: On the use of non-Euclidean distance measures in geostatistics. Mathematical Geology 38(8):907-926, 2006.

Shone SM, Curriero FC, Lesser CR, Glass GE: Characterizing population dynamics of Aedes sollicitans (Diptera: Culicidae) using meteorological data. Journal of Medical Entomology 43(2):393-402, 2006.

Klassen AC, Curriero F, Kulldorff M, Alberg AJ, Platz EA, Neloms ST: Missing stage and grade in Maryland prostate cancer surveillance data, 1992-1997. American Journal of Preventive Medicine 30(2 Suppl):S77-87, 2006.

Gaffney SH, Curriero FC, Strickland PT, Glass GE, Helzlsouer KJ, Breysse PN: Influence of geographic location in modeling blood pesticide levels in a community surrounding a U.S. Environmental protection agency superfund site. Environmental Health Perspectives 113(12):1712-6, 2005.

Curriero FC, Shone SM, Glass GE: Cross correlation maps: a tool for visualizing and modeling time lagged associations. Vector Borne and Zoonotic Diseases 5(3):267-75, 2005.

Klassen AC, Kulldorff M, Curriero F: Geographic clustering of prostate cancer grade and stage at diagnosis, before and after adjustment for risk factors. International Journal of Health Geographics 4(1):1, 2005.

Jennings JM, Curriero FC, Celentano D, Ellen JM: Geographic identification of high gonorrhea transmission areas in Baltimore, Maryland. American Journal of Epidemiology 161(1):73-80, 2005.

Bettinger JA, Adler NE, Curriero FC, Ellen JM: Risk perceptions, condom use, and sexually transmitted diseases among adolescent females according to social network position. Sexually Transmitted Diseases 31(9)575-579, 2004.

Henshaw SL, Curriero FC, Shields TM, Glass GE, Strickland PT, Breysse PN: Geostatistics and GIS: tools for characterizing environmental contamination. Journal of Medical Systems 28(4):335-348, 2004.

Klassen AC, Curriero FC, Hong JH, Williams C, Kulldorff M, Meissner HI, Alberg A, Ensminger M: The role of area-level influences on prostate cancer grade and stage at diagnosis. Preventive Medicine 39(3):441-8, 2004.

Bettinger JA, Celentano DD, Curriero FC, Adler NE, Millstein SG, Ellen JM: Does parental involvement predict new sexually transmitted diseases in female adolescents? Archives of Pediatrics and Adolescent Medicine 158(7):666-70, 2004.

Bernstein KT, Curriero FC, Jennings JM, Olthoff G, Erbelding EJ, Zenilman J: Defining core gonorrhea transmission utilizing spatial data. American Journal of Epidemiology 160(1):51-8, 2004.

Marie Diener-West (go to top of document)

Convergence Insufficiency Treatment Trial Study Group (includes Diener-West M): Long-term effectiveness of treatments for symptomatic convergence insufficiency in children. Optometry and Vision Science 86(9):1096-103, 2009.

Bittner AK, Diener-West M, Dagnelie G: A survey of photopsias in self-reported retinitis pigmentosa: location of photopsias is related to disease severity. Retina 29(10):1513-21, 2009.

Ybarra ML, Langhinrichsen-Rohling J, Friend J, Diener-West M: Impact of asking sensitive questions about violence to children and adolescents. Journal of Adolescent Health 45(5):499-507, 2009.

Merlo CA, Weiss ES, Orens JB, Borja MC, Diener-West M, Conte JV, Shah AS: Impact of U.S. Lung Allocation Score on survival after lung transplantation. Journal of Heart and Lung Transplantation 28(8):769-75, 2009.

Dixon BS, Beck GJ, Vazquez MA, Greenberg A, Delmez JA, Allon M, Dember LM, Himmelfarb J, Gassman JJ, Greene T, Radeva MK, Davidson IJ, Ikizler TA, Braden GL, Fenves AZ, Kaufman JS, Cotton JR Jr, Martin KJ, McNeil JW, Rahman A, Lawson JH, Whiting JF, Hu B, Meyers CM, Kusek JW, Feldman HI, DAC Study Group (includes Diener-West M): Effect of dipyridamole plus aspirin on hemodialysis graft patency. New England Journal of Medicine 360(21):2191-201, 2009.

Repka MX, Chandler DL, Holmes JM, Hoover DL, Morse CL, Schloff S, Silbert DI, Tien DR, Pediatric Eye Disease Investigator Group (includes Diener-West M): Balloon catheter dilation and nasolacrimal duct intubation for treatment of nasolacrimal duct obstruction after failed probing. Archives of Ophthalmology 127(5):633-9, 2009.

Hunt EA, Vera K, Diener-West M, Haggerty JA, Nelson KL, Shaffner DH, Pronovost PJ: Delays and errors in cardiopulmonary resuscitation and defibrillation by pediatric residents during simulated cardiopulmonary arrests. Resuscitation 80(7):819-25, 2009.

Rouse M, Borsting E, Mitchell GL, Cotter SA, Kulp M, Scheiman M, Barnhardt C, Bade A, Yamada T, Convergence Insufficiency Treatment Trial (CITT) Investigator Group (includes Diener-West M): Validity of the convergence insufficiency symptom survey: a confirmatory study. Optometry and Vision Science 86(4):357-63, 2009.

Amarasingham R, Plantinga L, Diener-West M, Gaskin DJ, Powe NR: Clinical information technologies and inpatient outcomes: a multiple hospital study. Archives of Internal Medicine 169(2):108-14, 2009.

Pediatric Eye Disease Investigator Group (includes Diener-West M): Interobserver reliability of the prism and alternate cover test in children with esotropia. Archives of Ophthalmology 127(1):59-65, 2009.

Singh AD, Schachat AP, Diener-West M, Reynolds SM: Small choroidal melanoma. Ophthalmology 115(12):2319-2319, 2008.

Lee JM, Kleinbaum D, Diener-West M, Grimley DM, Hellerstedt WL, Sullivan L, Aday LA, Riegelman R: Teaching excellence in public health: a call to action. Public Health Reports 123(3):405-7, 2008.

Ybarra ML, Diener-West M, Markow D, Leaf PJ, Hamburger M, Boxer P: Linkages between internet and other media violence with seriously violent behavior by youth. Pediatrics 122(5):929-37, 2008.

Pediatric Eye Disease Investigator Group (includes Diener-West M), Christiansen SP, Chandler DL, Holmes JM, Arnold RW, Birch E, Dagi LR, Hoover DL, Klimek DL, Melia BM, Paysse E, Repka MX, Suh DW, Ticho BH, Wallace DK, Weaver RG Jr: Instability of ocular alignment in childhood esotropia. Ophthalmology 115(12):2266-2274, 2008.

Amarasingham R, Diener-West M, Plantinga L, Cunningham AC, Gaskin DJ, Powe NR: Hospital characteristics associated with highly automated and usable clinical information systems in Texas, United States. BMC Medical Informatics and Decision Making 8(1):39, 2008.

Dodson JL, Furth SL, Hsiao CJ, Diener-West M, Levey EB, Wu AW, Gearhart JP: Health related quality of life in adolescents with abnormal bladder function: an assessment using the Child Health and Illness Profile-Adolescent Edition. Journal of Urology 180(4 Suppl):1846-51, 2008.

Pediatric Eye Disease Investigator Group (includes Diener-West M): A randomized trial of near versus distance activities while patching for amblyopia in children aged 3 to less than 7 years. Ophthalmology 115(11):2071-8, 2008.

Pediatric Eye Disease Investigator Group (includes Diener-West M), Repka MX, Kraker RT, Beck RW, Holmes JM, Cotter SA, Birch EE, Astle WF, Chandler DL, Felius J, Arnold RW, Tien DR, Glaser SR: A randomized trial of atropine vs patching for treatment of moderate amblyopia: follow-up at age 10 years. Archives of Ophthalmology 126(8):1039-44, 2008.

Dasenbrook EC, Merlo CA, Diener-West M, Lechtzin N, Boyle MP: Persistent methicillin-resistant Staphylococcus aureus and rate of FEV1 decline in cystic fibrosis. American Journal of Respiratory and Critical Care Medicine 178(8):814-21, 2008.

Salter ML, Go VF, Celentano DD, Diener-West M, Nkhoma CM, Kumwenda N, Taha TE: The role of men in women's acceptance of an intravaginal gel in a randomized clinical trial in Blantyre, Malawi: a qualitative and quantitative analysis. AIDS Care 20(7):853-62, 2008.

Dember LM, Beck GJ, Allon M, Delmez JA, Dixon BS, Greenberg A, Himmelfarb J, Vazquez MA, Gassman JJ, Greene T, Radeva MK, Braden GL, Ikizler TA, Rocco MV, Davidson IJ, Kaufman JS, Meyers CM, Kusek JW, Feldman HI, Dialysis Access Consortium Study Group (includes Diener-West M): Effect of clopidogrel on early failure of arteriovenous fistulas for hemodialysis: a randomized controlled trial. Journal of the American Medical Association 299(18):2164-71, 2008.

McLaughlin SE, Diener-West M, Indurkhya A, Rubin H, Heckmann R, Boyle MP: Improving transition from pediatric to adult cystic fibrosis care: lessons from a national survey of current practices. Pediatrics 121(5):e1160-6, 2008.

Weathers AC, Minkovitz CS, Diener-West M, O'Campo P: The effect of parental immigration authorization on health insurance coverage for migrant Latino children. Journal of Immigrant and Minority Health 10(3):247-54, 2008.

Avery RB, Diener-West M, Reynolds SM, Grossniklaus HE, Green WR, Albert DM: Histopathologic characteristics of choroidal melanoma in eyes enucleated after iodine 125 brachytherapy in the collaborative ocular melanoma study. Archives of Ophthalmology 126(2):207-12, 2008.

Ybarra ML, Diener-West M, Leaf PJ: Examining the overlap in internet harassment and school bullying: implications for school intervention. Journal of Adolescent Health 41(6 Suppl 1):S42-50, 2007.

Merlo CA, Boyle MP, Diener-West M, Marshall BC, Goss CH, Lechtzin N: Incidence and risk factors for multiple antibiotic-resistant Pseudomonas aeruginosa in cystic fibrosis. Chest 132(2):562-8, 2007.

Gilson MM, Diener-West M, Hawkins BS: Comparison of survival among eligible patients not enrolled versus enrolled in the Collaborative Ocular Melanoma Study (COMS) randomized trial of pre-enucleation radiation of large choroidal melanoma. Ophthalmic Epidemiology 14(4):251-7, 2007.

Geer LA, Anna D, Curbow B, Diener-West M, de Joode BW, Mitchell C, Buckley TJ: Survey assessment of worker dermal exposure and underlying behavioral determinants. Journal of Occupational and Environmental Hygiene 4(11):809-20, 2007.

Dodson JL, Diener-West M, Gerson AC, Kaskel FJ, Furth SL: An assessment of health related quality of life using the child health and illness profile-adolescent edition in adolescents with chronic kidney disease due to underlying urological disorders. Journal of Urology 178(2):660-5, 2007.

Hwang CW, Anderson GF, Diener-West M, Powe NR: Comorbidity and outcomes of coronary artery bypass graft surgery at cardiac specialty hospitals versus general hospitals. Medical Care 45(8):720-728, 2007.

Lee CK, Boyle MP, Diener-West M, Brass-Ernst L, Noschese M, Zeitlin PL: Levofloxacin pharmacokinetics in adult cystic fibrosis. Chest 131(3):796-802, 2007.

Amarasingham R, Pronovost PJ, Diener-West M, Goeschel C, Dorman T, Thiemann DR, Powe NR: Measuring clinical information technology in the ICU setting: application in a quality improvement collaborative. Journal of the American Medical Informatics Association 14(3):288-294, 2007.

Alberg AJ, Kouzis A, Genkinger JM, Gallicchio L, Burke AE, Hoffman SC, Diener-West M, Helzlsouer KJ, Comstock GW: A prospective cohort study of bladder cancer risk in relation to active cigarette smoking and household exposure to secondhand cigarette smoke. American Journal of Epidemiology 165(6):660-6, 2007.

Sedrakyan A, Wu A, Sedrakyan G, Diener-West M, Tranquilli M, Elefteriades J: Aprotinin use in thoracic aortic surgery: safety and outcomes. Journal of Thoracic and Cardiovascular Surgery 132(4):909-17, 2006.

Laurence B, Woods D, George D, Onyekwere O, Katz R, Lanzkron S, Diener-West M, Powe N: Self-perceived loss of control and untreated dental decay in African American adults with and without sickle cell disease. Journal of Health Care for the Poor and Underserved 17(3):641-51, 2006.

Arav-Boger R, Battaglia CA, Lazzarotto T, Gabrielli L, Zong JC, Hayward GS, Diener-West M, Landini MP: Cytomegalovirus (CMV)-encoded UL144 (truncated tumor necrosis factor receptor) and outcome of congenital CMV infection. Journal of Infectious Diseases 194(4):464-73, 2006.

Merenstein D, Diener-West M, Halbower AC, Krist A, Rubin HR: The trial of infant response to diphenhydramine: the TIRED Study--a randomized, controlled, patient-oriented trial. Archives of Pediatrics and Adolescent Medicine 160(7):707-712, 2006.

Windish DM, Diener-West M: A clinician-educator's roadmap to choosing and interpreting statistical tests. Journal of General Internal Medicine 21(6):656-60, 2006.

Laurence B, George D, Woods D, Shosanya A, Katz RV, Lanzkron S, Diener-West M, Powe N: The association between sickle cell disease and dental caries in African Americans. Special Care in Dentistry 26(3):95-100, 2006.

Daniel E, Ffytche TJ, Sundar Rao PS, Kempen JH, Diener-West M, Courtright P: Incidence of ocular morbidity among multibacillary leprosy patients during a 2 year course of multidrug therapy. British Journal of Ophthalmology 90(5):568-73, 2006.

Keyhani S, Diener-West M, Powe N: Are development times for pharmaceuticals increasing or decreasing? Health Affairs 25(2):461-8, 2006.

Amarasingham R, Diener-West M, Weiner M, Lehmann H, Herbers JE, Powe NR: Clinical information technology capabilities in four U.S. hospitals: testing a new structural performance measure. Medical Care 44(3):216-224, 2006.

Gallicchio L, Kouzis A, Genkinger JM, Burke AE, Hoffman SC, Diener-West M, Helzlsouer KJ, Comstock GW, Alberg AJ: Active cigarette smoking, household passive smoke exposure, and the risk of developing pancreatic cancer. Preventive Medicine 42(3):200-5, 2006.

Diener-West M, Reynolds SM, Agugliaro DJ, Caldwell R, Cumming K, Earle JD, Hawkins BS, Hayman JA, Straatsma BR, Thoma J: Development of metastatic disease after enrollment in the COMS trials for treatment of choroidal melanoma: Collaborative Ocular Melanoma Study Group Report No. 26. Archives of Ophthalmology 123(12):1639-43, 2005.

Merenstein D, Diener-West M, Krist A, Pinneger M, Cooper LA: An assessment of the shared-decision model in parents of children with acute otitis media. Pediatrics 116(6):1267-75, 2005.

Depineres T, Blumenthal PD, Diener-West M: Postpartum contraception: the New Mexico Pregnancy Risk Assessment Monitoring System. Contraception 72(6):422-425, 2005.

Laube BL, Geller DE, Lin TC, Dalby RN, Diener-West M, Zeitlin PL: Positive expiratory pressure changes aerosol distribution in patients with cystic fibrosis. Respiratory Care 50(11):1438-44, 2005.

Brooks WA, Santosham M, Naheed A, Goswami D, Wahed MA, Diener-West M, Faruque AS, Black RE: Effect of weekly zinc supplements on incidence of pneumonia and diarrhoea in children younger than 2 years in an urban, low-income population in Bangladesh: randomised controlled trial. Lancet 366(9490):999-1004, 2005.

Keyhani S, Diener-West M, Powe N: Do drug prices reflect development time and government investment? Medical Care 43(8):753-762, 2005.

Diener-West M, Reynolds SM, Agugliaro DJ, Caldwell R, Cumming K, Earle JD, Hawkins BS, Hayman JA, Jaiyesimi I, Kirkwood JM, Koh WJ, Robertson DM, Shaw JM, Straatsma BR, Thoma J, Collaborative Ocular Melanoma Study Group: Second primary cancers after enrollment in the COMS trials for treatment of choroidal melanoma: COMS Report No. 25. Archives of Ophthalmology 123(5):601-4, 2005.

Merenstein D, Egleston B, Diener-West M: Lengths of stay and costs associated with children's hospitals. Pediatrics 115(4):839-44, 2005.

Trimble CL, Genkinger JM, Burke AE, Hoffman SC, Helzlsouer KJ, Diener-West M, Comstock GW, Alberg AJ: Active and passive cigarette smoking and the risk of cervical neoplasia. Obstetrics and Gynecology 105(1):174-81, 2005.

Mobley RY, Moy CS, Reynolds SM, Diener-West M, Newhouse MM, Kerman JS, Hawkins BS, Collaborative Ocular Melanoma Study Group: Time trends in personnel certification and turnover in the Collaborative Ocular Melanoma Study. Clinical Trials 1(4):377-86, 2004.

Wu AW, Dave NB, Diener-West M, Sorensen S, Huang IC, Revicki DA: Measuring validity of self-reported symptoms among people with HIV. AIDS Care 16(7):876-881, 2004.

Diener-West M, Reynolds SM, Agugliaro DJ, Caldwell R, Cumming K, Earle JD, Green DL, Hawkins BS, Hayman J, Jaiyesimi I, Kirkwood JM, Koh WJ, Robertson DM, Shaw JM, Thoma J, Collaborative Ocular Melanoma Study Group Report 23: Screening for metastasis from choroidal melanoma: the Collaborative Ocular Melanoma Study Group Report 23. Journal of Clinical Oncology 22(12):2438-44, 2004.

Ybarra ML, Leaf PJ, Diener-West M: Sex differences in youth-reported depressive symptomatology and unwanted internet sexual solicitation. Journal of Medical Internet Research 6(1):E5, 2004.

Alberg AJ, Park JW, Hager BW, Brock MV, Diener-West M: The use of "Overall Accuracy" to evaluate the validity of screening or diagnostic tests. Journal of General Internal Medicine 19(5 Pt 1):460-5, 2004.

Payne-Sturges DC, Burke TA, Breysse P, Diener-West M, Buckley TJ: Personal exposure meets risk assessment: a comparison of measured and modeled exposures and risks in an urban community. Environmental Health Perspectives 112(5):589-98, 2004.

Weathers A, Minkovitz C, O'Campo P, Diener-West M: Access to care for children of migratory agricultural workers: factors associated with unmet need for medical care. Pediatrics 113(4):e276-82, 2004.

Thomas PA, Diener-West M, Canto MI, Martin DR, Post WS, Streiff MB: Results of an academic promotion and career path survey of faculty at the Johns Hopkins University School of Medicine. Academic Medicine 79(3):258-64, 2004.

Francesca Dominici (go to top of document)

Katsouyanni K, Samet JM, Anderson HR, Atkinson R, Le Tertre A, Medina S, Samoli E, Touloumi G, Burnett RT, Krewski D, Ramsay T, Dominici F, Peng RD, Schwartz J, Zanobetti A, HEI Health Review Committee: Air pollution and health: a European and North American approach (APHENA). Research Report (Health Effects Institute) 142:5-90, 2009.

Barr CD, Dominici F: Cap and trade legislation for greenhouse gas emissions: public health benefits from air pollution mitigation. Journal of the American Medical Association 303(1):69-70, 2010.

Kim S, Wipfli H, Navas-Acien A, Dominici F, Avila-Tang E, Onicescu G, Breysse P, Samet JM, FAMRI Homes Study Investigators: Determinants of hair nicotine concentrations in nonsmoking women and children: a multicountry study of secondhand smoke exposure in homes. Cancer Epidemiology, Biomarkers and Prevention 18(12):3407-14, 2009.

Bell ML, Peng RD, Dominici F, Samet JM: Emergency hospital admissions for cardiovascular diseases and ambient levels of carbon monoxide: results for 126 United States urban counties, 1999-2005. Circulation 120(11):949-55, 2009.

Brooke BS, Dominici F, Makary MA, Pronovost PJ: Use of beta-blockers during aortic aneurysm repair: bridging the gap between evidence and effective practice. Health Affairs (Project Hope) 28(4):1199-209, 2009.

Peng RD, Bell ML, Geyh AS, McDermott A, Zeger SL, Samet JM, Dominici F: Emergency admissions for cardiovascular and respiratory diseases and the chemical composition of fine particle air pollution. Environmental Health Perspectives 117(6):957-63, 2009.

Bell ML, Ebisu K, Peng RD, Samet JM, Dominici F: Hospital admissions and chemical composition of fine particle air pollution. American Journal of Respiratory and Critical Care Medicine 179(12):1115-20, 2009.

Bell ML, Ebisu K, Peng RD, Dominici F: Adverse health effects of particulate air pollution: modification by air conditioning. Epidemiology 20(5):682-6, 2009.

Welty LJ, Peng RD, Zeger SL, Dominici F: Bayesian distributed lag models: estimating effects of particulate matter air pollution on daily mortality. Biometrics 65(1):282-91, 2009.

White RH, Cote I, Zeise L, Fox M, Dominici F, Burke TA, White PD, Hattis DB, Samet JM: State-of-the-science workshop report: issues and approaches in low-dose-response extrapolation for environmental health risk assessment. Environmental Health Perspectives 117(2):283-7, 2009.

Barr CD, Dominici F: Comment on Article by Craigmile et al. Bayesian Analysis 4(1):37-40, 2009.

Johansson MA, Dominici F, Glass GE: Local and global effects of climate on dengue transmission in Puerto Rico. PLoS Neglected Tropical Diseases 3(2):e382, 2009.

Peng RD, Dominici F, Welty LJ: Bayesian hierarchical distributed lag model for estimating the time course of risk of hospitalization associated with particulate matter air pollution. Applied Statistics 58(1):3-24, 2008.

Zeger SL, Dominici F, McDermott A, Samet JM: Mortality in the Medicare population and chronic exposure to fine particulate air pollution in urban centers (2000-2005). Environmental Health Perspectives 116(12):1614-9, 2008.

Samoli E, Peng R, Ramsay T, Pipikou M, Touloumi G, Dominici F, Burnett R, Cohen A, Krewski D, Samet J, Katsouyanni K: Acute effects of ambient particulate matter on mortality in Europe and North America: results from the APHENA study. Environmental Health Perspectives 116(11):1480-6, 2008.

Bell ML, Ebisu K, Peng RD, Walker J, Samet JM, Zeger SL, Dominici F: Seasonal and regional short-term effects of fine particles on hospital admissions in 202 US counties, 1999-2005. American Journal of Epidemiology 168(11):1301-10, 2008.

Locke JE, Warren DS, Dominici F, Cameron AM, Leffell MS, McRann DA, Melancon JK, Segev DL, Simpkins CE, Singer AL, Zachary AA, Montgomery RA: Donor ethnicity influences outcomes following deceased-donor kidney transplantation in black recipients. Journal of the American Society of Nephrology 19(10):2011-9, 2008.

Crainiceanu CM, Dominici F: Adjustment uncertainty in effect estimation. Biometrika 95(3):635-651, 2008.

Venturini S, Dominici F, Parmigiani G: Gamma shape mixtures for heavy-tailed distributions. Annals of Applied Statistics 2(2):756-776, 2008.

Dominici F, Wang C, Crainiceanu C, Parmigiani G: Model selection and health effect estimation in environmental epidemiology. Epidemiology 19(4):558-60, 2008.

Brooke BS, Perler BA, Dominici F, Makary MA, Pronovost PJ: Reduction of in-hospital mortality among California hospitals meeting Leapfrog evidence-based standards for abdominal aortic aneurysm repair. Journal of Vascular Surgery 47(6):1155-1164, 2008.

Dominici F, Kramer S, Zambelli-Weiner A: The role of epidemiology in the law: a toxic tort litigation case. Law, Probability & Risk 7(1):15-34, 2008.

Peng RD, Chang HH, Bell ML, McDermott A, Zeger SL, Samet JM, Dominici F: Coarse particulate matter air pollution and hospital admissions for cardiovascular and respiratory diseases among Medicare patients. Journal of the American Medical Association 299(18):2172-9, 2008.

Bell ML, Dominici F: Effect modification by community characteristics on the short-term effects of ozone exposure and mortality in 98 US communities. American Journal of Epidemiology 167(8):986-97, 2008.

Eftim SE, Samet JM, Janes H, McDermott A, Dominici F: Fine particulate matter and mortality: a comparison of the Six Cities and American Cancer Society cohorts with a Medicare cohort. Epidemiology 19(2):209-216, 2008.

Dominici F, Peng RD, Ebisu K, Zeger SL, Samet JM, Bell ML: Does the effect of PM(10) on mortality depend on PM nickel and vanadium content? a reanalysis of the NMMAPS data. Environmental Health Perspectives 115(12):1701-3, 2007.

Bell ML, Kim JY, Dominici F: Potential confounding of particulate matter on the short-term association between ozone and mortality in multisite time-series studies. Environmental Health Perspectives 115(11):1591-1595, 2007.

Dominici F, Peng RD, Zeger SL, White RH, Samet JM: Particulate air pollution and mortality in the United States: did the risks change from 1987 to 2000? American Journal of Epidemiology 166(8):880-8, 2007.

Kim SR, Dominici F, Buckley TJ: Concentrations of vehicle-related air pollutants in an urban parking garage. Environmental Research 105(3):291-9, 2007.

Locke JE, Segev DL, Warren DS, Dominici F, Simpkins CE, Montgomery RA: Outcomes of kidneys from donors after cardiac death: implications for allocation and preservation. American Journal of Transplantation 7(7):1797-807, 2007.

Bell ML, Dominici F, Ebisu K, Zeger SL, Samet JM: Spatial and temporal variation in PM(2.5) chemical composition in the United States for health effects studies. Environmental Health Perspectives 115(7):989-95, 2007.

Janes H, Dominici F, Zeger SL: Trends in air pollution and mortality: an approach to the assessment of unmeasured confounding. Epidemiology 18(4):416-23, 2007.

Janes H, Dominici F, Zeger S: Partitioning evidence of association between air pollution and mortality. Epidemiology 18(4):427-8, 2007.

Thomas DC, Jerrett M, Kuenzli N, Louis TA, Dominici F, Zeger S, Schwarz J, Burnett RT, Krewski D, Bates D: Bayesian model averaging in time-series studies of air pollution and mortality. Journal of Toxicology and Environmental Health A 70(3-4):311-5, 2007.

Dominici F, Zeger SL, Parmigiani G, Katz J, Christian P: Does the effect of micronutrient supplementation on neonatal survival vary with respect to the percentiles of the birth weight distribution? Bayesian Analysis 2(1):1-30, 2007.

Symons JM, Wang L, Guallar E, Howell E, Dominici F, Schwab M, Ange BA, Samet J, Ondov J, Harrison D, Geyh A: A case-crossover study of fine particulate matter air pollution and onset of congestive heart failure symptom exacerbation leading to hospitalization. American Journal of Epidemiology 164(5):421-33, 2006.

Peng RD, Dominici F, Zeger SL: Reproducible epidemiologic research. American Journal of Epidemiology 163(9):783-9, 2006.

Katz J, Christian P, Dominici F, Zeger SL: Treatment effects of maternal micronutrient supplementation vary by percentiles of the birth weight distribution in rural Nepal. Journal of Nutrition 136(5):1389-94, 2006.

Bell ML, Peng RD, Dominici F: The exposure-response curve for ozone and risk of mortality and the adequacy of current ozone regulations. Environmental Health Perspectives 114(4):532-6, 2006.

Dominici F, Peng RD, Bell ML, Pham L, McDermott A, Zeger SL, Samet JM: Fine particulate air pollution and hospital admission for cardiovascular and respiratory diseases. Journal of the American Medical Association 295(10):1127-34, 2006.

Dominici F, Zeger SL, Parmigiani G, Katz J, Christian P: Estimating percentile-specific treatment effects in counterfactual models: a case-study of micronutrient supplementation, birth weight and infant mortality. Applied Statistics 55(2):261-280, 2006.

Peng RD, Dominici F, Louis TA: Model choice in time series studies of air pollution and mortality. Journal of the Royal Statistical Society-A 169(2):179-203, 2006.

Sapkota A, Halden RU, Dominici F, Groopman JD, Buckley TJ: Urinary biomarkers of 1,3-butadiene in environmental settings using liquid chromatography isotope dilution tandem mass spectrometry. Chemico-Biological Interactions 160(1):70-9, 2006.

Buja A, Mastrangelo G, Perissinotto E, Grigoletto F, Frigo AC, Rausa G, Marin V, Canova C, Dominici F: Cancer incidence among female flight attendants: a meta-analysis of published data. Journal of Women's Health 15(1):98-105, 2006.

Dominici F, Zeger SL: Smooth quantile ratio estimation with regression: estimating medical expenditures for smoking-attributable diseases. Biostatistics 6(4):505-519, 2005.

Choi L, Dominici F, Zeger SL, Ouyang P: Estimating treatment efficacy over time: a logistic regression model for binary longitudinal outcomes. Statistics in Medicine 24(18):2789-2805, 2005.

Dominici F, Cope L, Naiman DQ, Zeger SL: Smooth quantile ratio estimation. Biometrika 92(3):543-557, 2005.

Merialdi M, Caulfield LE, Zavaleta N, Figueroa A, Costigan KA, Dominici F, Dipietro JA: Fetal growth in Peru: comparisons with international fetal size charts and implications for fetal growth assessment. Ultrasound in Obstetrics and Gynecology 26(2):123-128, 2005.

Huang Y, Dominici F, Bell ML: Bayesian hierarchical distributed lag models for summer ozone exposure and cardio-respiratory mortality. Environmetrics 16(5):547-562, 2005.

Eftim S, Dominici F: Multisite time-series studies versus cohort studies: methods, findings, and policy implications. Journal of Toxicology and Environmental Health A 68(13):1191-205, 2005.

Fung K, Krewski D, Burnett R, Dominici F: Testing the harvesting hypothesis by time-domain regression analysis. I: baseline analysis. Journal of Toxicology and Environmental Health A 68(13):1137-54, 2005.

Dominici F, McDermott A, Daniels M, Zeger SL, Samet JM: Revised analyses of the National Morbidity, Mortality, and Air Pollution Study: mortality among residents of 90 cities. Journal of Toxicology and Environmental Health A 68(13):1071-92, 2005.

Dominici F, Levy JI, Louis TA: Methodological challenges and contributions in disaster epidemiology. Epidemiologic Reviews 27(1):9-12, 2005.

Bell ML, Dominici F, Samet JM: A meta-analysis of time-series studies of ozone and mortality with comparison to the National Morbidity, Mortality, and Air Pollution Study. Epidemiology 16(4):436-445, 2005.

Peng RD, Dominici F, Pastor-Barriuso R, Zeger SL, Samet JM: Seasonal analyses of air pollution and mortality in 100 US cities. American Journal of Epidemiology 161(6):585-94, 2005.

Huang IC, Diette GB, Dominici F, Frangakis C, Wu AW: Variations of physician group profiling indicators for asthma care. American Journal of Managed Care 11(1):38-44, 2005.

Huang IC, Dominici F, Frangakis C, Diette GB, Damberg CL, Wu AW: Is risk-adjustor selection more important than statistical approach for provider profiling? Asthma as an example. Medical Decision Making 25(1):20-34, 2005.

Huang IC, Frangakis C, Dominici F, Diette GB, Wu AW: Application of a propensity score approach for risk adjustment in profiling multiple physician groups on asthma care. Health Services Research 40(1):253-278, 2005.

Merialdi M, Caulfield LE, Zavaleta N, Figueroa A, Costigan KA, Dominici F, Dipietro JA: Randomized, controlled trial of prenatal zinc supplementation and fetal bone growth. Obstetrical & Gynecological Survey 60(1):13-15, 2005.

Basu R, Dominici F, Samet JM: Temperature and mortality among the elderly in the United States: a comparison of epidemiologic methods. Epidemiology 16(1):58-66, 2005.

Dominici F: Time-series analysis of air pollution and mortality: a statistical review. Research Report Health Effects Institute (123):3-27, 2004.

Dominici F, McDermott A, Hastie TJ: Improved semiparametric time series models of air pollution and mortality. Journal of the American Statistical Association 99(468):938-948, 2004.

Bell ML, McDermott A, Zeger SL, Samet JM, Dominici F: Ozone and short-term mortality in 95 US urban communities, 1987-2000. Journal of the American Medical Association 292(19):2372-2378, 2004.

Daniels MJ, Dominici F, Zeger SL, Samet JM: The National Morbidity, Mortality, and Air Pollution Study. Part III: PM10 concentration-response curves and thresholds for the 20 largest US cities. Research Report Health Effects Institute (94 Pt 3):1-21; discussion 23-30, 2004.

Dominici F, Spiegelman D, Cole SR: Methodological contributions to the American Journal of Epidemiology. American Journal of Epidemiology 160(3):197-8, 2004.

Dominici F, Zanobetti A, Zeger SL, Schwartz J, Samet JM: Hierarchical bivariate time series models: a combined analysis of the effects of particulate matter on morbidity and mortality. Biostatistics 5(3):341-60, 2004.

Yurk RA, Diette GB, Skinner EA, Dominici F, Clark RD, Steinwachs DM, Wu AW: Predicting patient-reported asthma outcomes for adults in managed care. American Journal of Managed Care 10(5):321-8, 2004.

Merialdi M, Caulfield LE, Zavaleta N, Figueroa A, Dominici F, Dipietro JA: Randomized controlled trial of prenatal zinc supplementation and the development of fetal heart rate. American Journal of Obstetrics and Gynecology 190(4):1106-12, 2004.

Merialdi M, Caulfield LE, Zavaleta N, Figueroa A, Costigan KA, Dominici F, Dipietro JA: Randomized controlled trial of prenatal zinc supplementation and fetal bone growth. American Journal of Clinical Nutrition 79(5):826-830, 2004.

Jackson LW, Correa-Villasenor A, Lees PS, Dominici F, Stewart PA, Breysse PN, Matanoski G: Parental lead exposure and total anomalous pulmonary venous return. Birth Defects Research Part A: Clinical and Molecular Teratology 70(4):185-93, 2004.

Bell ML, Samet JM, Dominici F: Time-series studies of particulate matter. Annual Review of Public Health 25:247-280, 2004.

Daniels MJ, Dominici F, Zeger S: Underestimation of standard errors in multi-site time series studies. Epidemiology 15(1):57-62, 2004.

Constantine Frangakis (go to top of document)

An MW, Frangakis CE, Musick BS, Yiannoutsos CT: The need for double-sampling designs in survival studies: an application to monitor PEPFAR. Biometrics 65(1):301-6, 2009.

Stuart EA, Azur M, Frangakis C, Leaf P: Multiple imputation with large data sets: a case study of the Children's Mental Health Initiative. American Journal of Epidemiology 169(9):1133-9, 2009.

Frangakis C: The calibration of treatment effects from clinical trials to target populations. Clinical Trials 6(2):136-40, 2009.

Tan EJ, Rebok GW, Yu Q, Frangakis CE, Carlson MC, Wang T, Ricks M, Tanner EK, McGill S, Fried LP: The long-term relationship between high-intensity volunteering and physical activity in older African American women. Journals of Gerontology Series B 64(2):304-11, 2009.

Cole SR, Frangakis CE: The consistency statement in causal inference: a definition or an assumption? Epidemiology 20(1):3-5, 2009.

Yiannoutsos CT, An MW, Frangakis CE, Musick BS, Braitstein P, Wools-Kaloustian K, Ochieng D, Martin JN, Bacon MC, Ochieng V, Kimaiyo S: Sampling-based approaches to improve estimation of mortality among patient dropouts: experience from a large PEPFAR-funded program in Western Kenya. PLoS One 3(12):e3843, 2008.

Buijs M, Vossen JA, Frangakis C, Hong K, Georgiades CS, Chen Y, Liapi E, Geschwind JF: Nonresectable hepatocellular carcinoma: long-term toxicity in patients treated with transarterial chemoembolization--single-center experience. Radiology 249(1):346-54, 2008.

Huang IC, Frangakis C, Atkinson MJ, Willke RJ, Leite WL, Vogel WB, Wu AW: Addressing ceiling effects in health status measures: a comparison of techniques applied to measures for people with HIV disease. Health Services Research 43(1 Pt 1):327-39, 2008.

Frangakis CE, Wu H: The geometry of inadmissibility of independent observations for estimating a single parameter in two-parameter ordered symmetric problems. Metron 65(3), 2007.

Roland C, Varadhan R, Frangakis CE: Squared polynomial extrapolation methods with cycling: an application to the positron emission tomography problem. Numerical Algorithms 44(2):159-172, 2007.

Segal JB, Griswold M, Achy-Brou A, Herbert R, Bass EB, Dy SM, Millman AE, Wu AW, Frangakis CE: Using propensity scores subclassification to estimate effects of longitudinal treatments: an example using a new diabetes medication. Medical Care 45(10 Supl 2):S149-57, 2007.

Frangakis CE, Rubin DB, An MW, MacKenzie E: Rejoinder to "Principal stratification designs to estimate input data missing due to death." Biometrics 63(3):658-62, 2007.

Frangakis CE, Rubin DB, An MW, MacKenzie E: Principal stratification designs to estimate input data missing due to death. Biometrics 63(3):641-9, 2007.

Terzidis A, Koutroumpa A, Skalkidis I, Matzavakis I, Malliori M, Frangakis CE, DiScala C, Petridou ET: Water safety: age-specific changes in knowledge and attitudes following a school-based intervention. Injury Prevention 13(2):120-4, 2007.

Bergenstrom A, Go V, Nam LV, Thuy BT, Celentano DD, Frangakis C, Quan VM: Return to post-test counselling by out-of-treatment injecting drug users participating in a cross-sectional survey in north Vietnam. AIDS Care 19(7):935-9, 2007.

Huang IC, Willke RJ, Atkinson MJ, Lenderking WR, Frangakis C, Wu AW: US and UK versions of the EQ-5D preference weights: does choice of preference weights make a difference? Quality of Life Research 16(6):1065-72, 2007.

Baker SG, Frangakis C, Lindeman KS: Estimating efficacy in a proposed randomized trial with initial and later non-compliance. Applied Statistics 56(2):211-221, 2007.

Dassopoulos T, Frangakis C, Cruz-Correa M, Talor MV, Burek CL, Datta L, Nouvet F, Bayless TM, Brant SR: Antibodies to saccharomyces cerevisiae in Crohn's disease: higher titers are associated with a greater frequency of mutant NOD2/CARD15 alleles and with a higher probability of complicated disease. Inflammatory Bowel Diseases 13(2):143-51, 2007.

Farmakakis T, Dessypris N, Alexe DM, Frangakis C, Petoussis G, Malliori M, Petridou TE: Magnitude and object-specific hazards of aspiration and ingestion injuries among children in Greece. International Journal of Pediatric Otorhinolaryngology 71(2):317-24, 2007.

Vlahos NF, Lipari CW, Bankowski B, Lai TH, King JA, Shih IeM, Frangakis C, Zhao Y: Effect of luteal-phase support on endometrial L-selectin ligand expression after recombinant follicle-stimulating hormone and ganirelix acetate for in vitro fertilization. Journal of Clinical Endocrinology and Metabolism 91(10):4043-9, 2006.

Martin BK, Frangakis CE, Rosenberg PB, Mintzer JE, Katz IR, Porsteinsson AP, Schneider LS, Rabins PV, Munro CA, Meinert CL, Niederehe G, Lyketsos CG: Design of depression in Alzheimer's Disease Study-2. American Journal of Geriatric Psychiatry 14(11):920-930, 2006.

Georgiades CS, Liapi E, Frangakis C, Park JU, Kim HW, Hong K, Geschwind JF: Prognostic accuracy of 12 liver staging systems in patients with unresectable hepatocellular carcinoma treated with transarterial chemoembolization. Journal of Vascular and Interventional Radiology 17(10):1619-24, 2006.

Li F, Frangakis CE: Polydesigns and causal inference. Biometrics 62(2):343-51, 2006.

Go VF, Frangakis C, Nam le V, Bergenstrom A, Sripaipan T, Zenilman JM, Celentano DD, Quan VM: High HIV sexual risk behaviors and sexually transmitted disease prevalence among injection drug users in Northern Vietnam: implications for a generalized HIV epidemic. Journal of Acquired Immune Deficiency Syndrome 42(1):108-15, 2006.

Huang IC, Frangakis C, Wu AW: The relationship of excess body weight and health-related quality of life: evidence from a population study in Taiwan. International Journal of Obesity 30(8):1250-9, 2006.

Huang IC, Wu AW, Frangakis C: Do the SF-36 and WHOQOL-BREF measure the same constructs? Evidence from the Taiwan population. Quality of Life Research 15(1):15-24, 2006.

Doan BQ, Sorant AJ, Frangakis CE, Bailey-Wilson JE, Shugart YY: Covariate-based linkage analysis: application of a propensity score as the single covariate consistently improves power to detect linkage. European Journal of Human Genetics 14(9):1018-26, 2006.

Doan BQ, Frangakis CE, Shugart YY, Bailey-Wilson JE: Application of the propensity score in a covariate-based linkage analysis of the Collaborative Study on the Genetics of Alcoholism. BMC Genetics 6 Suppl 1:S33, 2005.

Papadopoulos FC, Frangakis CE, Skalkidou A, Petridou E, Stevens RG, Trichopoulos D: Exploring lag and duration effect of sunshine in triggering suicide. Journal of Affective Disorders 88(3):287-97, 2005.

Li F, Frangakis C: Designs in partially controlled studies: messages from a review. Statistical Methods in Medical Research 14(4):417-431, 2005.

Matzavakis I, Frangakis CE, Charalampopoulou A, Petridou E: Burn injuries related to motorcycle exhaust pipes: a study in Greece. Burns 31(3):372-4, 2005.

Huang IC, Diette GB, Dominici F, Frangakis C, Wu AW: Variations of physician group profiling indicators for asthma care. American Journal of Managed Care 11(1):38-44, 2005.

Huang IC, Dominici F, Frangakis C, Diette GB, Damberg CL, Wu AW: Is risk-adjustor selection more important than statistical approach for provider profiling? Asthma as an example. Medical Decision Making 25(1):20-34, 2005.

Huang IC, Frangakis C, Dominici F, Diette GB, Wu AW: Application of a propensity score approach for risk adjustment in profiling multiple physician groups on asthma care. Health Services Research 40(1):253-278, 2005.

Mock V, Frangakis C, Davidson NE, Ropka ME, Pickett M, Poniatowski B, Stewart KJ, Cameron L, Zawacki K, Podewils LJ, Cohen G, McCorkle R: Exercise manages fatigue during breast cancer treatment: a randomized controlled trial. Psychooncology 14(6):464-477, 2004.

Frangakis CE, Varadhan R: Systematizing the evaluation of partially controlled studies using principal stratification: from theory to practice. Statistica Sinica 14(2):945-947, 2004.

Petridou E, Dessypris N, Frangakis CE, Belechri M, Mavrou A, Trichopoulos D: Estimating the population burden of injuries: a comparison of household surveys and emergency department surveillance. Epidemiology 15(4):428-432, 2004.

Frangakis CE, Brookmeyer RS, Varadhan R, Safaeian M, Vlahov D, Strathdee SA: Methodology for evaluating a partially controlled longitudinal treatment using principal stratification, with application to a needle exchange program. Journal of the American Statistical Association 99(465):239-249, 2004.

Papadopoulos FC, Petridou E, Frangakis CE, Farmakakis T, Moller H, Rider G: Switching to the Euro: still hard to swallow. Archives of Disease in Childhood 89(4):382-3, 2004.

Varadhan R, Frangakis CE: Revealing and addressing length bias and heterogeneous effects in frequency case-crossover studies. American Journal of Epidemiology 159(6):596-602, 2004.

Steven Goodman (go to top of document)

Li M, Chen WD, Papadopoulos N, Goodman SN, Bjerregaard NC, Laurberg S, Levin B, Juhl H, Arber N, Moinova H, Durkee K, Schmidt K, He Y, Diehl F, Velculescu VE, Zhou S, Diaz LA Jr, Kinzler KW, Markowitz SD, Vogelstein B: Sensitive digital quantification of DNA methylation in clinical samples. Nature Biotechnology 27(9):858-63, 2009.

Dawson L, Zarin DA, Emanuel EJ, Friedman LM, Chaudhari B, Goodman SN: Considering usual medical care in clinical trial design. PLoS Medicine 6(9):e1000111, 2009.

Luce BR, Kramer JM, Goodman SN, Connor JT, Tunis S, Whicher D, Schwartz JS: Rethinking randomized clinical trials for comparative effectiveness research: the need for transformational change. Annals of Internal Medicine 151(3):206-9, 2009.

Goodman SN: Building a Bayesian bridge from evidence to guidelines. Archives of Internal Medicine 169(15):1436-7, 2009.

Kass NE, Sugarman J, Medley AM, Fogarty LA, Taylor HA, Daugherty CK, Emerson MR, Goodman SN, Hlubocky FJ, Hurwitz HI, Carducci M, Goodwin-Landher A: An intervention to improve cancer patients' understanding of early-phase clinical trials. IRB 31(3):1-10, 2009.

Goodman SN: Stopping trials for efficacy: an almost unbiased view. Clinical Trials 6(2):133-5, 2009.

Kasamon YL, Wahl RL, Ziessman HA, Blackford AL, Goodman SN, Fidyk CA, Rogers KM, Bolanos-Meade J, Borowitz MJ, Ambinder RF, Jones RJ, Swinnen LJ: Phase II study of risk-adapted therapy of newly diagnosed, aggressive non-Hodgkin lymphoma based on midtreatment FDG-PET scanning. Biology of Blood and Marrow Transplantation 15(2):242-8, 2009.

Freeman JM, Vining EP, Kossoff EH, Pyzik PL, Ye X, Goodman SN: A blinded, crossover study of the efficacy of the ketogenic diet. Epilepsia 50(2):322-5, 2009.

Kass N, Taylor H, Fogarty L, Sugarman J, Goodman SN, Goodwin-Landher A, Carducci M, Hurwitz H: Purpose and benefits of early phase cancer trials: what do oncologists say? What do patients hear? Journal of Empirical Research on Human Research Ethics 3(3):57-68, 2008.

Singh A, Boldin-Adamsky S, Thimmulappa RK, Rath SK, Ashush H, Coulter J, Blackford A, Goodman SN, Bunz F, Watson WH, Gabrielson E, Feinstein E, Biswal S: RNAi-mediated silencing of nuclear factor erythroid-2-related factor 2 gene expression in non-small cell lung cancer inhibits tumor growth and increases efficacy of chemotherapy. Cancer Research 68(19):7975-84, 2008.

Diehl F, Schmidt K, Choti MA, Romans K, Goodman S, Li M, Thornton K, Agrawal N, Sokoll L, Szabo SA, Kinzler KW, Vogelstein B, Diaz LA Jr: Circulating mutant DNA to assess tumor dynamics. Nature Medicine 14(9):985-90, 2008.

Goodman S: A dirty dozen: twelve p-value misconceptions. Seminars in Hematology 45(3):135-40, 2008.

Marchionni L, Wilson RF, Wolff AC, Marinopoulos S, Parmigiani G, Bass EB, Goodman SN: Systematic review: gene expression profiling assays in early-stage breast cancer. Annals of Internal Medicine 148(5):358-69, 2008.

Hoque MO, Begum S, Brait M, Jeronimo C, Zahurak M, Ostrow KL, Rosenbaum E, Trock B, Westra WH, Schoenberg M, Goodman SN, Sidransky D: Tissue inhibitor of metalloproteinases-3 promoter methylation is an independent prognostic factor for bladder cancer. Journal of Urology 179(2):743-7, 2008.

Carvalho AL, Jeronimo C, Kim MM, Henrique R, Zhang Z, Hoque MO, Chang S, Brait M, Nayak CS, Jiang WW, Claybourne Q, Tokumaru Y, Lee J, Goldenberg D, Garrett-Mayer E, Goodman S, Moon CS, Koch W, Westra WH, Sidransky D, Califano JA: Evaluation of promoter hypermethylation detection in body fluids as a screening/diagnosis tool for head and neck squamous cell carcinoma. Clinical Cancer Research 14(1):97-107, 2008.

Goodman SN: Systematic reviews are not biased by results from trials stopped early for benefit. Journal of Clinical Epidemiology 61(1):95-6, 2008.

Marchionni L, Wilson RF, Marinopoulos SS, Wolff AC, Parmigiani G, Bass EB, Goodman SN: Impact of gene expression profiling tests on breast cancer outcomes. Evidence Report/Technology Assessment 160:1-105, 2007.

Goodman SN: Rashomon revisited: two views of monitoring the Women's Health Initiative trials. Clinical Trials 4(3):205-6, 2007.

Goodman SN: Stopping at nothing? Some dilemmas of data monitoring in clinical trials. Annals of Internal Medicine 146(12):882-7, 2007.

Goodman S, Greenland S: Why most published research findings are false: problems in the analysis. PLoS Medicine 4(4):e168, 2007.

Burger I, Schill K, Goodman S: Disclosure of individual surgeon's performance rates during informed consent: ethical and epistemological considerations. Annals of Surgery 245(4):507-513, 2007.

Laine C, Goodman SN, Griswold ME, Sox HC: Reproducible research: moving toward research the public can really trust. Annals of Internal Medicine 146(6):450-3, 2007.

Hoque MO, Begum S, Topaloglu O, Chatterjee A, Rosenbaum E, Van Criekinge W, Westra WH, Schoenberg M, Zahurak M, Goodman SN, Sidransky D: Quantitation of promoter methylation of multiple genes in urine DNA and bladder cancer detection. Journal of the National Cancer Institute 98(14):996-1004, 2006.

Laowattana S, Zeger SL, Lima JA, Goodman SN, Wittstein IS, Oppenheimer SM: Left insular stroke is associated with adverse cardiac outcome. Neurology 66(4):477-83, 2006.

Ioannidis JP, Mulrow CD, Goodman SN: Adverse events: the more you search, the more you find. Annals of Internal Medicine 144(4):298-300, 2006.

Kasamon YL, Flinn IW, Grever MR, Diehl LF, Garrett-Mayer E, Goodman SN, Lucas MS, Byrd JC: Phase I study of low-dose interleukin-2, fludarabine, and cyclophosphamide for previously untreated indolent lymphoma and chronic lymphocytic leukemia. Clinical Cancer Research 11(23):8413-7, 2005.

Goodman SN, Sladky JT: A Bayesian approach to randomized controlled trials in children utilizing information from adults: the case of Guillain-Barre syndrome. Clinical Trials 2(4):305-310, 2005.

Goodman SN: Introduction to Bayesian methods I: measuring the strength of evidence. Clinical Trials 2(4):282-290, 2005.

Goodman SN: Ethics and evidence in clinical trials. Clinical Trials 2(3):195-196, 2005.

Goodman SN: The methodologic ozone effect. Epidemiology 16(4):430-5, 2005.

Dickersin K, Goodman S: The long and creative arm of the drug industry. Lancet 365(9460):656, 2005.

Franco EL, Correa P, Santella RM, Wu X, Goodman SN, Petersen GM: Role and limitations of epidemiology in establishing a causal association. Seminars in Cancer Biology 14(6):413-26, 2004.

Umbricht CB, Conrad GT, Clark DP, Westra WH, Smith DC, Zahurak M, Saji M, Smallridge RC, Goodman S, Zeiger MA: Human telomerase reverse transcriptase gene expression and the surgical management of suspicious thyroid tumors. Clinical Cancer Research 10(17):5762-8, 2004.

Szekely CA, Thorne JE, Zandi PP, Ek M, Messias E, Breitner JC, Goodman SN: Nonsteroidal anti-inflammatory drugs for the prevention of Alzheimer's disease: a systematic review. Neuroepidemiology 23(4):159-69, 2004.

Rafael Irizarry (go to top of document)

Irizarry RA, Wang C, Zhou Y, Speed TP: Gene set enrichment analysis made simple. Statistical Methods in Medical Research 18(6):565-75, 2009.

Doi A, Park IH, Wen B, Murakami P, Aryee MJ, Irizarry R, Herb B, Ladd-Acosta C, Rho J, Loewer S, Miller J, Schlaeger T, Daley GQ, Feinberg AP: Differential methylation of tissue- and cancer-specific CpG island shores distinguishes human induced pluripotent stem cells, embryonic stem cells and fibroblasts. Nature Genetics 41(12):1350-3, 2009.

Ritchie ME, Carvalho BS, Hetrick KN, Tavare S, Irizarry RA: R/Bioconductor software for Illumina's Infinium whole-genome genotyping BeadChips. Bioinformatics 25(19):2621-3, 2009.

Wen B, Wu H, Shinkai Y, Irizarry RA, Feinberg AP: Large histone H3 lysine 9 dimethylated chromatin blocks distinguish differentiated from embryonic stem cells. Nature Genetics 41(2):246-50, 2009.

Irizarry RA, Ladd-Acosta C, Wen B, Wu Z, Montano C, Onyango P, Cui H, Gabo K, Rongione M, Webster M, Ji H, Potash JB, Sabunciyan S, Feinberg AP: The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores. Nature Genetics 41(2):178-86, 2009.

Yegnasubramanian S, Haffner MC, Zhang Y, Gurel B, Cornish TC, Wu Z, Irizarry RA, Morgan J, Hicks J, DeWeese TL, Isaacs WB, Bova GS, De Marzo AM, Nelson WG: DNA hypomethylation arises later in prostate cancer progression than CpG island hypermethylation and contributes to metastatic tumor heterogeneity. Cancer Research 68(21):8954-67, 2008.

Wen B, Wu H, Bjornsson H, Green RD, Irizarry R, Feinberg AP: Overlapping euchromatin/heterochromatin- associated marks are enriched in imprinted gene regions and predict allele-specific modification. Genome Research 18(11):1806-13, 2008.

Wang W, Carvalho B, Miller ND, Pevsner J, Chakravarti A, Irizarry RA: Estimating genome-wide copy number using allele-specific mixture models. Journal of Computational Biology 15(7):857-66, 2008.

McCall MN, Irizarry RA: Consolidated strategy for the analysis of microarray spike-in data. Nucleic Acids Research 36(17):e108, 2008.

Bjornsson HT, Sigurdsson MI, Fallin MD, Irizarry RA, Aspelund T, Cui H, Yu W, Rongione MA, Ekstrom TJ, Harris TB, Launer LJ, Eiriksdottir G, Leppert MF, Sapienza C, Gudnason V, Feinberg AP: Intra-individual change over time in DNA methylation with familial clustering. Journal of the American Medical Association 299(24):2877-83, 2008.

Bjornsson HT, Albert TJ, Ladd-Acosta CM, Green RD, Rongione MA, Middle CM, Irizarry RA, Broman KW, Feinberg AP: SNP-specific array-based allele-specific expression analysis. Genome Research 18(5):771-9, 2008.

Irizarry RA, Ladd-Acosta C, Carvalho B, Wu H, Brandenburg SA, Jeddeloh JA, Wen B, Feinberg AP: Comprehensive high-throughput arrays for relative methylation (CHARM). Genome Research 18(5):780-90, 2008.

Lin S, Carvalho B, Cutler DJ, Arking DE, Chakravarti A, Irizarry RA: Validation and extension of an empirical Bayes method for SNP calling on Affymetrix microarrays. Genome Biology 9(4):R63, 2008.

Peyser BD, Irizarry R, Spencer FA: Statistical analysis of fitness data determined by TAG hybridization on microarrays. Methods in Molecular Biology 416:369-82, 2007.

Meluh PB, Pan X, Yuan DS, Tiffany C, Chen O, Sookhai-Mahadeo S, Wang X, Peyser BD, Irizarry R, Spencer FA, Boeke JD: Analysis of genetic interactions on a genome-wide scale in budding yeast: diploid-based synthetic lethality analysis by microarray. Methods in Molecular Biology 416:221-48, 2007.

Rodriguez-Quinones JF, Irizarry RA, Diaz-Blanco NL, Rivera-Molina FE, Gomez-Garzon D, Rodriguez-Medina JR: Global mRNA expression analysis in myosin II deficient strains of Saccharomyces cerevisiae reveals an impairment of cell integrity functions. BMC Genomics 9(1):34, 2008.

Bengtsson H, Irizarry R, Carvalho B, Speed TP: Estimation and assessment of raw copy numbers at the single locus level. Bioinformatics 24(6):759-67, 2008.

Wu Z, Irizarry RA: A statistical framework for the analysis of microarray probe-level data. Annals of Applied Statistics 1(2):333-357, 2007.

Zilliox MJ, Irizarry RA: A gene expression bar code for microarray data. Nature Methods 4(11):911-913, 2007.

Loyo-Berrios NI, Irizarry R, Hennessey JG, Tao XG, Matanoski G: Air pollution sources and childhood asthma attacks in Catano, Puerto Rico. American Journal of Epidemiology 165(8):927-35, 2007.

Carvalho B, Bengtsson H, Speed TP, Irizarry RA: Exploration, normalization, and genotype calls of high-density oligonucleotide SNP array data. Biostatistics 8(2):485-99, 2007.

Wheelan SJ, Scheifele LZ, Martinez-Murillo F, Irizarry RA, Boeke JD: Eukaryotic transposable elements and genome evolution special feature: transposon insertion site profiling chip (TIP-chip). Proceedings of the National Academy of Sciences 103(47):17632-7, 2006.

Rayner TF, Rocca-Serra P, Spellman PT, Causton HC, Farne A, Holloway E, Irizarry RA, Liu J, Maier DS, Miller M, Petersen K, Quackenbush J, Sherlock G, Stoeckert CJ Jr, White J, Whetzel PL, Wymore F, Parkinson H, Sarkans U, Ball CA, Brazma A: A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB. BMC Bioinformatics 7(1):489, 2006.

Wheelan SJ, Martinez-Murillo F, Irizarry RA, Boeke JD: Stacking the deck: double-tiled DNA microarrays. Nature Methods 3(11):903-7, 2006.

Yuan DS, Irizarry RA: High-resolution spatial normalization for microarrays containing embedded technical replicates. Bioinformatics 22(24):3054-60, 2006.

Katz S, Irizarry RA, Lin X, Tripputi M, Porter MW: A summarization approach for Affymetrix GeneChip data using a reference training set from a large, biologically diverse database. BMC Bioinformatics 7:464, 2006.

Irizarry RA, Cope LM, Wu Z: Feature-level exploration of a published Affymetrix GeneChip control dataset. Genome Biology 7(8):404, 2006.

Takahashi H, McCaffery JM, Irizarry RA, Boeke JD: Nucleocytosolic acetyl-coenzyme a synthetase is required for histone acetylation and global transcription. Molecular Cell 23(2):207-17, 2006.

Dipietro JA, Caulfield LE, Irizarry RA, Chen P, Merialdi M, Zavaleta N: Prenatal development of intrafetal and maternal-fetal synchrony. Behavioral Neuroscience 120(3):687-701, 2006.

Irizarry RA, Wu Z, Jaffee HA: Comparison of Affymetrix GeneChip expression measures. Bioinformatics 22(7):789-94, 2006.

Zeger SL, Irizarry R, Peng RD: On time series analysis of public health and biomedical data. Annual Review of Public Health 27:57-79, 2006.

Cope L, Hartman SM, Gohlmann HW, Tiesman JP, Irizarry RA: Analysis of Affymetrix GeneChip data using amplified RNA. Biotechniques 40(2):165-6, 168, 170, 2006.

Quackenbush J, Stoeckert C, Ball C, Brazma A, Gentleman R, Huber W, Irizarry R, Salit M, Sherlock G, Spellman P, Winegarden N: Top-down standards will not serve systems biology. Nature 440(7080):24, 2006.

Ooi SL, Pan X, Peyser BD, Ye P, Meluh PB, Yuan DS, Irizarry RA, Bader JS, Spencer FA, Boeke JD: Global synthetic-lethality analysis and yeast functional profiling. Trends in Genetics 22(1):56-63, 2006.

Lechtzin N, John M, Irizarry R, Merlo C, Diette GB, Boyle MP: Outcomes of adults with cystic fibrosis infected with antibiotic-resistant Pseudomonas aeruginosa. Respiration 73(1):27-33, 2006.

Baker SC, Bauer SR, Beyer RP, Brenton JD, Bromley B, Burrill J, Causton H, Conley MP, Elespuru R, Fero M, Foy C, Fuscoe J, Gao X, Gerhold DL, Gilles P, Goodsaid F, Guo X, Hackett J, Hockett RD, Ikonomi P, Irizarry RA, et al: The External RNA Controls Consortium: a progress report. Nature Methods 2(10):731-4, 2005.

Peyser BD, Irizarry RA, Tiffany CW, Chen O, Yuan DS, Boeke JD, Spencer FA: Improved statistical analysis of budding yeast TAG microarrays revealed by defined spike-in pools. Nucleic Acids Research 33(16):e140, 2005.

Wu Z, Irizarry RA: Stochastic models inspired by hybridization theory for short oligonucleotide arrays. Journal of Computational Biology 12(6):882-93, 2005.

Yuan DS, Pan X, Ooi SL, Peyser BD, Spencer FA, Irizarry RA, Boeke JD: Improved microarray methods for profiling the yeast knockout strain collection. Nucleic Acids Research 33(12):e103, 2005.

Kittleson MM, Minhas KM, Irizarry RA, Ye SQ, Edness G, Breton E, Conte JV, Tomaselli G, Garcia JG, Hare JM: Gene expression in giant cell myocarditis: altered expression of immune response genes. International Journal of Cardiology 102(2):333-40, 2005.

Hansel NN, Hilmer SC, Georas SN, Cope LM, Guo J, Irizarry RA, Diette GB: Oligonucleotide-microarray analysis of peripheral-blood lymphocytes in severe asthma. Journal of Laboratory and Clinical Medicine 145(5):263-74, 2005.

Irizarry RA, Warren D, Spencer F, Kim IF, Biswal S, Frank BC, Gabrielson E, Garcia JG, Geoghegan J, Germino G, Griffin C, Hilmer SC, Hoffman E, Jedlicka AE, Kawasaki E, Martinez-Murillo F, Morsberger L, Lee H, Petersen D, Quackenbush J, Scott A, Wilson M, Yang Y, Ye SQ, Yu W: Multiple-laboratory comparison of microarray platforms. Nature Methods 2(5):345-350, 2005.

Kendziorski C, Irizarry RA, Chen KS, Haag JD, Gould MN: On the utility of pooling biological samples in microarray experiments. Proceedings of the National Cademic of Sciences 102(12):4252-7, 2005.

Irizarry RA: Parameters with musical interpretations. Chance 17(4):30-38, 2004.

Kittleson MM, Ye SQ, Irizarry RA, Minhas KM, Edness G, Conte JV, Parmigiani G, Miller LW, Chen Y, Hall JL, Garcia JG, Hare JM: Identification of a gene expression profile that differentiates between ischemic and nonischemic cardiomyopathy. Circulation 110(22):3444-51, 2004.

Wu Z, Irizarry RA, Gentleman R, Martinez-Murillo F, Spencer F: A model-based background adjustment for oligonucleotide expression arrays. Journal of the American Statistical Association 99(468):909-917, 2004.

Bolstad BM, Collin F, Simpson KM, Irizarry RA, Speed TP: Experimental design and low-level analysis of microarray data. International Review of Neurobiology 60:25-58, 2004.

Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JY, Zhang J: Bioconductor: open software development for computational biology and bioinformatics. Genome 5(10):R80, 2004.

Dipietro JA, Irizarry RA, Costigan KA, Gurewitsch ED: The psychophysiology of the maternal-fetal relationship. Psychophysiology 41(4):510-20, 2004.

Wu Z, Irizarry RA: Preprocessing of oligonucleotide array data. Nature Biotechnology 22(6):656-8, 2004.

Grigoryev DN, Ma SF, Irizarry RA, Ye SQ, Quackenbush J, Garcia JG: Orthologous gene-expression profiling in multi-species models: search for candidate genes. Genome Biology 5(5):R34, 2004.

Warren CD, Eckley DM, Lee MS, Hanna JS, Hughes A, Peyser B, Jie C, Irizarry R, Spencer FA: S-phase checkpoint genes safeguard high-fidelity sister chromatid cohesion. Molecular Biology of the Cell 15(4):1724-35, 2004.

Cope LM, Irizarry RA, Jaffee HA, Wu Z, Speed TP: A benchmark for Affymetrix GeneChip expression measures. Bioinformatics 20(3):323-31, 2004.

Gautier L, Cope L, Bolstad BM, Irizarry RA: affy--analysis of Affymetrix GeneChip data at the probe level. Bioinformatics 20(3):307-15, 2004.

Cummings DA, Irizarry RA, Huang NE, Endy TP, Nisalak A, Ungchusak K, Burke DS: Travelling waves in the occurrence of dengue haemorrhagic fever in Thailand. Nature 427(6972): 344-7, 2004.

Chen H, Irizarry RA, Luo L, Zirkin BR: Leydig cell gene expression: effects of age and caloric restriction. Experimental Gerontology 39(1): 31-43, 2004.

Harris Jaffee (go to top of document)

Irizarry RA, Wu Z, Jaffee HA: Comparison of Affymetrix GeneChip expression measures. Bioinformatics 22(7):789-94, 2006.

Cope LM, Irizarry RA, Jaffee HA, Wu Z, Speed TP: A benchmark for Affymetrix GeneChip expression measures. Bioinformatics 20(3):323-31, 2004.

Bass EB, Marsh MJ, Mangione CM, Bressler NM, Childs AL, Dong LM, Hawkins BS, Jaffee HA, Miskala P, Submacular Surgery Trials Research Group: Patients' perceptions of the value of current vision: assessment of preference values among patients with subfoveal choroidal neovascularization--The Submacular Surgery Trials Vision Preference Value Scale: SST Report No. 6. Archives of Ophthalmology 122(12):1856-67, 2004.

Hongkai Ji (go to top of document)

Judy JT, Ji H: TileProbe: modeling tiling array probe effects using publicly available data. Bioinformatics 25(18):2369-75, 2009.

Nishi Y, Ji H, Wong WH, McMahon AP, Vokes SA: Modeling the spatio-temporal network that drives patterning in the vertebrate central nervous system. Biochimica et Biophysica Acta 1789(4):299-305, 2009.

Ji H, Jiang H, Ma W, Johnson DS, Myers RM, Wong WH: An integrated software system for analyzing ChIP-chip and ChIP-seq data. Nature Biotechnology 26(11):1293-300, 2008.

Vokes SA, Ji H, Wong WH, McMahon AP: A genome-scale analysis of the cis-regulatory circuitry underlying sonic hedgehog-mediated patterning of the mammalian limb. Genes and Development 22(19):2651-63, 2008.

Vokes SA, Ji H, McCuine S, Tenzen T, Giles S, Zhong S, Longabaugh WJ, Davidson EH, Wong WH, McMahon AP: Genomic characterization of Gli-activator targets in sonic hedgehog-mediated neural patterning. Development 134(10):1977-89, 2007.

Paik JH, Kollipara R, Chu G, Ji H, Xiao Y, Ding Z, Miao L, Tothova Z, Horner JW, Carrasco DR, Jiang S, Gilliland DG, Chin L, Wong WH, Castrillon DH, DePinho RA: FoxOs are lineage-restricted redundant tumor suppressors and regulate endothelial cell homeostasis. Cell 128(2):309-23, 2007.

Ji H, Vokes SA, Wong WH: A comparative analysis of genome-wide chromatin immunoprecipitation data for mammalian transcription factors. Nucleic Acids Research 34(21):e146, 2006.

Ji H, Wong WH: Computational biology: toward deciphering gene regulatory information in mammalian genomes. Biometrics 62(3):645-63, 2006.

Kim RS, Ji H, Wong WH: An improved distance measure between the expression profiles linking co-expression and co-regulation in mouse. BMC Bioinformatics 7:44, 2006.

Hellmann I, Prufer K, Ji H, Zody MC, Paabo S, Ptak SE: Why do human diversity levels vary at a megabase scale? Genome Research 15(9):1222-31, 2005.

Ji H, Wong WH: TileMap: create chromosomal map of tiling array hybridizations. Bioinformatics 21(18):3629-36, 2005.

Xu Q, Jia YB, Zhang BY, Zou K, Tao YB, Wang YP, Qiang BQ, Wu GY, Shen Y, Ji HK, Huang Y, Sun XQ, Ji L, Li YD, Yuan YB, Shu L, Yu X, Shen YC, Yu YQ, Ju GZ, Chinese Schizophrenia Consortium: Association study of an SNP combination pattern in the dopaminergic pathway in paranoid schizophrenia: a novel strategy for complex disorders. Molecular Psychiatry 9(5):510-21, 2004.

Chimpanzee Sequencing and Analysis Consortium (includes Ji H): Initial sequence of the chimpanzee genome and comparison with the human genome. Nature 437(7055):69-87, 2005.

Ben Langmead (go to top of document)

Langmead B, Schatz MC, Lin J, Pop M, Salzberg SL: Searching for SNPs with cloud computing. Genome Biology 10(11):R134, 2009.

Langmead B, Trapnell C, Pop M, Salzberg SL: Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biology 10(3):R25, 2009.

Jeffrey Leek (go to top of document)

Lu R, Markowetz F, Unwin RD, Leek JT, Airoldi EM, MacArthur BD, Lachmann A, Rozov R, Ma'ayan A, Boyer LA, Troyanskaya OG, Whetton AD, Lemischka IR: Systems-level dynamic analyses of fate change in murine embryonic stem cells. Nature 462(7271):358-62, 2009.

Leek JT: The tspair package for finding top scoring pair classifiers in R. Bioinformatics 25(9):1203-4, 2009.

Leek JT, Storey JD: A general framework for multiple testing dependence. Proceedings of the National Academy of Sciences 105(48):18718-23, 2008.

Leek JT, Storey JD: Capturing heterogeneity in gene expression studies by surrogate variable analysis. PLoS Genetics 3(9):1724-35, 2007.

Akey JM, Biswas S, Leek JT, Storey JD: On the design and analysis of gene expression studies in human populations. Nature Genetics 39(7):807-8, 2007.

Storey JD, Dai JY, Leek JT: The optimal discovery procedure for large-scale significance testing, with applications to comparative microarray experiments. Biostatistics 8(2):414-32, 2007.

Leek JT, Monsen E, Dabney AR, Storey JD: EDGE: extraction and analysis of differential gene expression. Bioinformatics 22(11):1412, 2006.

Storey JD, Xiao W, Leek JT, Tompkins RG, Davis RW: Significance analysis of time course microarray experiments. Proceedings of the National Academy of Sciences 102(36):12837-42, 2005.

Kung-Yee Liang (go to top of document)

Nestadt G, Di CZ, Riddle MA, Grados MA, Greenberg BD, Fyer AJ, McCracken JT, Rauch SL, Murphy DL, Rasmussen SA, Cullen B, Pinto A, Knowles JA, Piacentini J, Pauls DL, Bienvenu OJ, Wang Y, Liang KY, Samuels JF, Roche KB: Obsessive-compulsive disorder: subclassification based on co-morbidity. Psychological Medicine 39(9):1491-501, 2009.

Sull JW, Liang KY, Hetmanski JB, Wu T, Fallin MD, Ingersoll RG, Park JW, Wu-Chou YH, Chen PK, Chong SS, Cheah F, Yeow V, Park BY, Jee SH, Jabs EW, Redett R, Scott AF, Beaty TH: Evidence that TGFA influences risk to cleft lip with/without cleft palate through unconventional genetic mechanisms. Human Genetics 126(3):385-94, 2009.

Bienvenu OJ, Wang Y, Shugart YY, Welch JM, Grados MA, Fyer AJ, Rauch SL, McCracken JT, Rasmussen SA, Murphy DL, Cullen B, Valle D, Hoehn-Saric R, Greenberg BD, Pinto A, Knowles JA, Piacentini J, Pauls DL, Liang KY, Willour VL, Riddle M, Samuels JF, Feng G, Nestadt G: Sapap3 and pathological grooming in humans: Results from the OCD collaborative genetics study. American Journal of Medical Genetics Part B 150B(5):710-20, 2009.

Risch N, Herrell R, Lehner T, Liang KY, Eaves L, Hoh J, Griem A, Kovacs M, Ott J, Merikangas KR: Interaction between the serotonin transporter gene (5-HTTLPR), stressful life events, and risk of depression: a meta-analysis. Journal of the American Medical Association 301(23):2462-71, 2009.

McGrath JA, Avramopoulos D, Lasseter VK, Wolyniec PS, Fallin MD, Liang KY, Nestadt G, Thornquist MH, Luke JR, Chen PL, Valle D, Pulver AE: Familiality of novel factorial dimensions of schizophrenia. Archives of General Psychiatry 66(6):591-600, 2009.

Ng MY, Levinson DF, ..., Liang KY, et al: Meta-analysis of 32 genome-wide linkage studies of schizophrenia. Molecular Psychiatry 14(8):774-85, 2009.

Holmans PA, Riley B, Pulver AE, ..., Liang KY, et al: Genomewide linkage scan of schizophrenia in a large multicenter pedigree sample using single nucleotide polymorphisms. Molecular Psychiatry 14(8):786-95, 2009.

Shugart YY, Wang Y, Samuels JF, Grados MA, Greenberg BD, Knowles JA, McCracken JT, Rauch SL, Murphy DL, Rasmussen SA, Cullen B, Hoehn-Saric R, Pinto A, Fyer AJ, Piacentini J, Pauls DL, Bienvenu OJ, Riddle MA, Liang KY, Nestadt G: A family-based association study of the glutamate transporter gene SLC1A1 in obsessive-compulsive disorder in 378 families. American Journal of Medical Genetics Part B 150B(6):886-92, 2009.

Sull JW, Liang KY, Hetmanski JB, Fallin MD, Ingersoll RG, Park J, Wu-Chou YH, Chen PK, Chong SS, Cheah F, Yeow V, Park BY, Jee SH, Jabs EW, Redett R, Scott AF, Beaty TH: Maternal transmission effects of the PAX genes among cleft case-parent trios from four populations. European Journal of Human Genetics 17(6):831-9, 2009.

Wang Y, Samuels JF, Chang YC, Grados MA, Greenberg BD, Knowles JA, McCracken JT, Rauch SL, Murphy DL, Rasmussen SA, Cullen B, Hoehn-Saric R, Pinto A, Fyer AJ, Piacentini J, Pauls DL, Bienvenu OJ, Riddle M, Shugart YY, Liang KY, Nestadt G: Gender differences in genetic linkage and association on 11p15 in obsessive-compulsive disorder families. American Journal of Medical Genetics Part B 150B(1):33-40, 2009.

Chen PL, Avramopoulos D, Lasseter VK, McGrath JA, Fallin MD, Liang KY, Nestadt G, Feng N, Steel G, Cutting AS, Wolyniec P, Pulver AE, Valle D: Fine mapping on chromosome 10q22-q23 implicates Neuregulin 3 in schizophrenia. American Journal of Human Genetics 84(1):21-34, 2009.

Liu CC, Liang KY, Liao SC: Antidepressant-associated mania: soon after switch from fluoxetine to mirtazapine in an elderly woman with mixed depressive features. Journal of Psychopharmacology 23(2):220-2, 2009.

Samuels JF, Bienvenu OJ, Pinto A, Murphy DL, Piacentini J, Rauch SL, Fyer AJ, Grados MA, Greenberg BD, Knowles JA, McCracken JT, Cullen B, Riddle MA, Rasmussen SA, Pauls DL, Liang KY, Hoehn-Saric R, Pulver AE, Nestadt G: Sex-specific clinical correlates of hoarding in obsessive-compulsive disorder. Behaviour Research and Therapy 46(9):1040-6, 2008.

Sull JW, Liang KY, Hetmanski JB, Fallin MD, Ingersoll RG, Park JW, Wu-Chou YH, Chen PK, Chong SS, Cheah F, Yeow V, Park BY, Jee SH, Jabs EW, Redett R, Scott AF, Beaty TH: Excess maternal transmission of markers in TCOF1 among cleft palate case-parent trios from three populations. American Journal of Medical Genetics Part A 146A(18):2327-2331, 2008.

Cullen B, Samuels JF, Pinto A, Fyer AJ, McCracken JT, Rauch SL, Murphy DL, Greenberg BD, Knowles JA, Piacentini J, Bienvenu OJ 3rd, Grados MA, Riddle MA, Rasmussen SA, Pauls DL, Willour VL, Shugart YY, Liang KY, Hoehn-Saric R, Nestadt G: Demographic and clinical characteristics associated with treatment status in family members with obsessive-compulsive disorder. Depression and Anxiety 25(3):218-24, 2008.

Pinto A, Greenberg BD, Grados MA, Bienvenu OJ 3rd, Samuels JF, Murphy DL, Hasler G, Stout RL, Rauch SL, Shugart YY, Pauls DL, Knowles JA, Fyer AJ, McCracken JT, Piacentini J, Wang Y, Willour VL, Cullen B, Liang KY, Hoehn-Saric R, Riddle MA, Rasmussen SA, Nestadt G: Further development of YBOCS dimensions in the OCD Collaborative Genetics Study: Symptoms vs. categories. Psychiatry Research 160(1):83-93, 2008.

Samuels JF, Bienvenu OJ, Grados MA, Cullen B, Riddle MA, Liang KY, Eaton WW, Nestadt G: Prevalence and correlates of hoarding behavior in a community-based sample. Behaviour Research and Therapy 46(7):836-44, 2008.

Sull JW, Liang KY, Hetmanski JB, Fallin MD, Ingersoll RG, Park J, Wu-Chou YH, Chen PK, Chong SS, Cheah F, Yeow V, Park BY, Jee SH, Jabs EW, Redett R, Jung E, Ruczinski I, Scott AF, Beaty TH: Differential parental transmission of markers in RUNX2 among cleft case-parent trios from four populations. Genetic Epidemiology 32(6):505-12, 2008.

Cullen B, Samuels J, Grados M, Landa R, Bienvenu OJ, Liang KY, Riddle M, Hoehn-Saric R, Nestadt G: Social and communication difficulties and obsessive-compulsive disorder. Psychopathology 41(3):194-200, 2008.

Liang KY, Wang Y, Shugart YY, Grados M, Fyer AJ, Rauch S, Murphy D, McCracken J, Rasmussen S, Cullen B, Hoehn-Saric R, Greenberg B, Pinto A, Knowles J, Piacentini J, Pauls D, Bienvenu O, Riddle M, Samuels J, Nestadt G: Evidence for potential relationship between SLC1A1 and a putative genetic linkage region on chromosome 14q to obsessive-compulsive disorder with compulsive hoarding. American Journal of Medical Genetics Part B, Neuropsychiatric Genetics 147B(6):1000-2, 2008.

Chiu YF, Liang KY, Chuang LM, Beaty TH: Incorporation of covariates into multipoint linkage disequilibrium mapping in case-control studies. Genetic Epidemiology 32(2):143-51, 2008.

Wellen D, Samuels J, Bienvenu OJ, Grados M, Cullen B, Riddle M, Liang KY, Nestadt G: Utility of the Leyton Obsessional Inventory to distinguish OCD and OCPD. Depression and Anxiety 24(5):301-6, 2007.

Yeh LL, Liu JY, Lin KS, Liu YS, Chiou JM, Liang KY, Tsai TF, Wang LH, Chen CT, Huang CY: A randomised placebo-controlled trial of a traditional Chinese herbal formula in the treatment of primary dysmenorrhoea. PLoS One 2:e719, 2007.

Cullen B, Brown CH, Riddle MA, Grados M, Bienvenu OJ, Hoehn-Saric R, Shugart YY, Liang KY, Samuels J, Nestadt G: Factor analysis of the Yale-Brown Obsessive Compulsive Scale in a family study of obsessive-compulsive disorder. Depression and Anxiety 24(2):130-8, 2007.

Grados MA, Samuels J, Shugart YY, Willour VL, Wang Y, Cullen B, Bienvenu OJ, Hoehn-Saric R, Valle D, Liang KY, Riddle MA, Wendland JR, Murphy DL, Nestadt G, Detera-Wadleigh S: Rare plus common SERT variants in obsessive-compulsive disorder. Molecular Psychiatry 12(5):422-3, 2007.

Samuels J, Shugart YY, Grados MA, Willour VL, Bienvenu OJ, Greenberg BD, Knowles JA, McCracken JT, Rauch SL, Murphy DL, Wang Y, Pinto A, Fyer AJ, Piacentini J, Pauls DL, Cullen B, Rasmussen SA, Hoehn-Saric R, Valle D, Liang KY, Riddle MA, Nestadt G: Significant linkage to compulsive hoarding on chromosome 14 in Families with obsessive-compulsive disorder: Results from the OCD Collaborative Genetics Study. American Journal of Psychiatry 164(3):493-9, 2007.

Gau SS, Chong MY, Yang P, Yen CF, Liang KY, Cheng AT: Psychiatric and psychosocial predictors of substance use disorders among adolescents: longitudinal study. British Journal of Psychiatry 190:42-8, 2007.

Hasler G, Pinto A, Greenberg BD, Samuels J, Fyer AJ, Pauls D, Knowles JA, McCracken JT, Piacentini J, Riddle MA, Rauch SL, Rasmussen SA, Willour VL, Grados MA, Cullen B, Bienvenu OJ, Shugart YY, Liang KY, Hoehn-Saric R, Wang Y, Ronquillo J, Nestadt G, Murphy DL, OCD Collaborative Genetics Study: Familiality of factor analysis-derived YBOCS dimensions in OCD-affected sibling pairs from the OCD Collaborative Genetics Study. Biological Psychiatry 61(5):617-25, 2007.

Beaty TH, Hetmanski JB, Fallin MD, Park JW, Sull JW, McIntosh I, Liang KY, Vanderkolk CA, Redett RJ, Boyadjiev SA, Jabs EW, Chong SS, Cheah FS, Wu-Chou YH, Chen PK, Chiu YF, Yeow V, Ng IS, Cheng J, Huang S, Ye X, Wang H, Ingersoll R, Scott AF: Analysis of candidate genes on chromosome 2 in oral cleft case-parent trios from three populations. Human Genetics 120(4):501-18, 2006.

Shugart YY, Samuels J, Willour VL, Grados MA, Greenberg BD, Knowles JA, McCracken JT, Rauch SL, Murphy DL, Wang Y, Pinto A, Fyer AJ, Piacentini J, Pauls DL, Cullen B, Page J, Rasmussen SA, Bienvenu OJ, Hoehn-Saric R, Valle D, Liang KY, Riddle MA, Nestadt GL: Genomewide linkage scan for obsessive-compulsive disorder: evidence for susceptibility loci on chromosomes 3q, 7p, 1q, 15q, and 6q. Molecular Psychiatry 11(8):763-70, 2006.

Rosenblatt A, Liang KY, Zhou H, Abbott MH, Gourley LM, Margolis RL, Brandt J, Ross CA: The association of CAG repeat length with clinical progression in Huntington disease. Neurology 66(7):1016-20, 2006.

Samuels JF, Riddle MA, Greenberg BD, Fyer AJ, McCracken JT, Rauch SL, Murphy DL, Grados MA, Pinto A, Knowles JA, Piacentini J, Cannistraro PA, Cullen B, Bienvenu OJ 3rd, Rasmussen SA, Pauls DL, Willour VL, Shugart YY, Liang KY, Hoehn-Saric R, Nestadt G: The OCD collaborative genetics study: methods and sample description. American Journal of Medical Genetics Part B: Neuropyschiatric Genetics 141B(3):201-207, 2006.

Chen YM, Liang SY, Shih YP, Chen CY, Lee YM, Chang L, Jung SY, Ho MS, Liang KY, Chen HY, Chan YJ, Chu DC: Epidemiological and genetic correlates of severe acute respiratory syndrome coronavirus infection in the hospital with the highest nosocomial infection rate in Taiwan in 2003. Journal of Clinical Microbiology 44(2):359-65, 2006.

Fallin MD, Lasseter VK, Avramopoulos D, Nicodemus KK, Wolyniec PS, McGrath JA, Steel G, Nestadt G, Liang KY, Huganir RL, Valle D, Pulver AE: Bipolar I disorder and schizophrenia: a 440-single-nucleotide polymorphism screen of 64 candidate genes among Ashkenazi Jewish case-parent trios. American Journal of Human Genetics 77(6):918-36, 2005.

Liang KY, Chiu YF: Multipoint linkage disequilibrium mapping using case-control designs. Genetic Epidemiology 29(4):365-376, 2005.

Zeiger JS, Beaty TH, Liang KY: Oral clefts, maternal smoking, and TGFA: a meta-analysis of gene-environment interaction. Cleft Palate-Craniofacial Journal 42(1):58-63, 2005.

Chiou JM, Liang KY, Chiu YF: Multipoint linkage mapping using sibpairs: non-parametric estimation of trait effects with quantitative covariates. Genetic Epidemiology 28(1):58-69, 2005.

Chen WM, Broman KW, Liang KY: Power and robustness of linkage tests for quantitative traits in general pedigrees. Genetic Epidemiology 28(1):11-23, 2005.

McGrath JA, Nestadt G, Liang KY, Lasseter VK, Wolyniec PS, Fallin MD, Thornquist MH, Luke JR, Pulver AE: Five latent factors underlying schizophrenia: analysis and relationship to illnesses in relatives. Schizophrenia Bulletin 30(4):855-73, 2004.

Hong JP, Samuels J, Bienvenu OJ 3rd, Cannistraro P, Grados M, Riddle MA, Liang KY, Cullen B, Hoehn-Saric R, Nestadt G: Clinical correlates of recurrent major depression in obsessive-compulsive disorder. Depression and Anxiety 20(2):86-91, 2004.

Willour VL, Yao Shugart Y, Samuels J, Grados M, Cullen B, Bienvenu OJ 3rd, Wang Y, Liang KY, Valle D, Hoehn-Saric R, Riddle M, Nestadt G: Replication study supports evidence for linkage to 9p24 in obsessive-compulsive disorder. American Journal of Human Genetics 75(3):508-13, 2004.

Fallin MD, Lasseter VK, Wolyniec PS, McGrath JA, Nestadt G, Valle D, Liang KY, Pulver AE: Genomewide linkage scan for bipolar-disorder susceptibility loci among Ashkenazi Jewish families. American Journal of Human Genetics 75(2):204-19, 2004.

Storr C, Zhou H, Liang KY, Anthony J: Empirically derived latent classes of tobacco dependence syndromes observed in recent-onset tobacco smokers: Epidemiological evidence from a national probability sample survey. Nicotine and Tobacco Research 6(3):533-45, 2004.

Mowry BJ, Holmans PA, Pulver AE, Gejman PV, Riley B, Williams NM, Laurent C, Schwab SG, Wildenauer DB, Bauche S, Owen MJ, Wormley B, Sanders AR, Nestadt G, Liang KY, et al: Multicenter linkage study of schizophrenia loci on chromosome 22q. Molecular Psychiatry 9(8):784-95, 2004.

Chen WM, Broman KW, Liang KY: Quantitative trait linkage analysis by generalized estimating equations: Unification of variance components and Haseman-Elston regression. Genetic Epidemiology 26(4):265-72, 2004.

Chiu YF, Liang KY: Conditional multipoint linkage analysis using affected sib pairs: an alternative approach. Genetic Epidemiology 26(2):108-15, 2004.

Pulver AE, McGrath JA, Liang KY, Lasseter VK, Nestadt G, Wolyniec PS: An indirect test of the new mutation hypothesis associating advanced paternal age with the etiology of schizophrenia. American Journal of Medical Genetics 124B(1):6-9, 2004.

Thomas Louis (go to top of document)

D'Armiento JM, Scharf SM, Roth MD, Connett JE, Ghio A, Sternberg D, Goldin JG, Louis TA, Mao JT, O'Connor GT, Ramsdell JW, Ries AL, Schluger NW, Sciurba FC, Skeans MA, Voelker H, Walter RE, Wendt CH, Weinmann GG, Wise RA, Foronjy RF: Eosinophil and T cell markers predict functional decline in COPD patients. Respiratory Research 10:113, 2009.

Luo S, Crainiceanu CM, Louis TA, Chatterjee N: Bayesian inference for smoking cessation with a latent cure state. Biometrics 65(3):970-8, 2009.

Chu H, Chen S, Louis TA: Random effects models in a meta-analysis of the accuracy of two diagnostic tests without a gold standard. Journal of the American Statistical Association 104(486):512-523, 2009.

Dixon BS, Beck GJ, Vazquez MA, Greenberg A, Delmez JA, Allon M, Dember LM, Himmelfarb J, Gassman JJ, Greene T, Radeva MK, Davidson IJ, Ikizler TA, Braden GL, Fenves AZ, Kaufman JS, Cotton JR Jr, Martin KJ, McNeil JW, Rahman A, Lawson JH, Whiting JF, Hu B, Meyers CM, Kusek JW, Feldman HI, DAC Study Group (includes Louis T): Effect of dipyridamole plus aspirin on hemodialysis graft patency. New England Journal of Medicine 360(21):2191-201, 2009.

Lin R, Louis TA, Paddock SM, Ridgeway G: Ranking USRDS provider specific SMRs from 1998-2001. Health Services and Outcomes Research Methodology 9(1):22-38, 2009.

Louis TA, Zeger SL: Effective communication of standard errors and confidence intervals. Biostatistics 10(1):1-2, 2009.

Luo S, Crainiceanu CM, Louis TA, Chatterjee N: Analysis of smoking cessation patterns using a stochastic mixed-effects model With a latent cured state. Journal of the American Statistical Association 103(483):1002-1013, 2008.

Crawford SO, Reich NG, An MW, Brookmeyer R, Louis TA, Nelson KE, Notari EP, Trouern-Trend J, Zou S: Regional and temporal variation in American Red Cross blood donations, 1995 to 2005. Transfusion 48(8):1576-1583, 2008.

Hertzberg V, Ingall T, O'Fallon W, Asplund K, Goldfrank L, Louis T, Christianson T: Methods and processes for the reanalysis of the NINDS tissue plasminogen activator for acute ischemic stroke treatment trial. Clinical Trials 5(4):308-15, 2008.

Jennings JM, Louis TA, Ellen JM, Srikrishnan AK, Sivaram S, Mayer K, Solomon S, Kelly R, Celentano DD: Geographic prevalence and multilevel determination of community-level factors associated with herpes simplex virus type 2 infection in Chennai, India. American Journal of Epidemiology 167(12):1495-503, 2008.

Dember LM, Beck GJ, Allon M, Delmez JA, Dixon BS, Greenberg A, Himmelfarb J, Vazquez MA, Gassman JJ, Greene T, Radeva MK, Braden GL, Ikizler TA, Rocco MV, Davidson IJ, Kaufman JS, Meyers CM, Kusek JW, Feldman HI, Dialysis Access Consortium Study Group (includes Louis TA): Effect of clopidogrel on early failure of arteriovenous fistulas for hemodialysis: a randomized controlled trial. Journal of the American Medical Association 299(18):2164-71, 2008.

Bozzette SA, Ake CF, Tam HK, Phippard A, Cohen D, Scharfstein DO, Louis TA: Long-term survival and serious cardiovascular events in HIV-infected patients treated with highly active antiretroviral therapy. Journal of Acquired Immune Deficiency Syndromes 47(3):338-41, 2008.

O'Connor PJ, Rush WA, Davidson G, Louis TA, Solberg LI, Crain L, Johnson PE, Whitebird RR: Variation in quality of diabetes care at the levels of patient, physician, and clinic. Preventing Chronic Disease 5(1):A15, 2008.

Fryar CD, Hirsch R, Porter KS, Kottiri B, Brody DJ, Louis T: Drug use and sexual behaviors reported by adults: United States, 1999-2002. Advance Data (384):1-14, 2007.

Louis TA: Our future as history. Biometrics 63(1):1-9, 2007.

Thomas DC, Jerrett M, Kuenzli N, Louis TA, Dominici F, Zeger S, Schwarz J, Burnett RT, Krewski D, Bates D: Bayesian model averaging in time-series studies of air pollution and mortality. Journal of Toxicology and Environmental Health A 70(3-4):311-5, 2007.

Walsh A, Louis TA, Glass G: Detecting multiple levels of effect during survey sampling using a Bayesian approach: point prevalence estimates of a hantavirus in hispid cotton rats (Sigmodon hispidus). Ecological Modelling 205(1-2):29-38, 2007.

Collins AJ, Kasiske B, Herzog C, Chavers B, Foley R, Gilbertson D, Grimm R, Liu J, Louis T, Manning W, McBean M, Murray A, St Peter W, Xue J, Fan Q, Guo H, Li Q, Li S, Qiu Y, Li S, Roberts T, Skeans M, Snyder J, Solid C, Wang C, Weinhandl E, Zhang R, Arko C, Chen SC, Dalleska F, Daniels F, Dunning S, Ebben J, Frazier E, Hanzlik C, Johnson R, Sheets D, Wang X, Forrest B, Berrini D, Constantini E, Everson S, Eggers P, Agodoa L: Excerpts from the United States Renal Data System 2006 Annual Data Report. American Journal of Kidney Diseases 49(1 Suppl 1):A6-7, S1-296, 2007.

Lin R, Louis TA, Paddock SM, Ridgeway G: Loss function based ranking in two-stage, hierarchical models. Bayesian Analysis 1(4):915-946, 2006.

Roth MD, Connett JE, D'Armiento JM, Foronjy RF, Friedman PJ, Goldin JG, Louis TA, Mao JT, Muindi JR, O'Connor GT, Ramsdell JW, Ries AL, Scharf SM, Schluger NW, Sciurba FC, Skeans MA, Walter RE, Wendt CH, Wise RA, FORTE Study Investigators: Feasibility of retinoids for the treatment of emphysema study. Chest 130(5):1334-45, 2006.

DeMets DL, Stormo G, Boehnke M, Louis TA, Taylor J, Dixon D: Training of the next generation of biostatisticians: a call to action in the U.S. Statistics in Medicine 25(20):3415-29, 2006.

Paddock SM, Ridgeway G, Lin R, Louis TA: Flexible distributions for triple-goal estimates in two-stage hierarchical models. Computational Statistics and Data Analysis 50(11):3243-3262, 2006.

Marquis MS, Buntin MB, Escarce JJ, Kapur K, Louis TA, Yegian JM: Consumer decision making in the individual health insurance market. Health Affairs 25(3):w226-34, 2006.

Louis GB, Dukic V, Heagerty PJ, Louis TA, Lynch CD, Ryan LM, Schisterman EF, Trumble A, Pregnancy Modeling Working Group: Analysis of repeated pregnancy outcomes. Statistical Methods in Medical Research 15(2):103-26, 2006.

Marquis MS, Buntin MB, Escarce JJ, Kapur K, Louis TA: Is the individual market more than a bridge market? an analysis of disenrollment decisions. Inquiry 42(4):381-96, 2006.

Peng RD, Dominici F, Louis TA: Model choice in time series studies of air pollution and mortality. Journal of the Royal Statistical Society-A 169(2):179-203, 2006.

Louis TA: Comment on: Song, Fan, and Kalbfleisch: Maximization by parts in likelihood inference. Journal of the American Statistical Association 100(472):1159-1160, 2005.

Gilbertson DT, Liu J, Xue JL, Louis TA, Solid CA, Ebben JP, Collins AJ: Projecting the number of patients with end-stage renal disease in the United States to the year 2015. Journal of the American Society of Nephrology 16(12):3736-41, 2005.

Louis TA: Introduction to Bayesian methods II: fundamental concepts. Clinical Trials 2(4):291-294, 2005.

Pearson ML, Wu S, Schaefer J, Bonomi AE, Shortell SM, Mendel PJ, Marsteller JA, Louis TA, Rosen M, Keeler EB: Assessing the implementation of the chronic care model in quality improvement collaboratives. Health Services Research 40(4):978-96, 2005.

Schisterman EF, Whitcomb BW, Louis GM, Louis TA: Lipid adjustment in the analysis of environmental contaminants and human health risks. Environmental Health Perspectives 113(7):853-7, 2005.

Dominici F, Levy JI, Louis TA: Methodological challenges and contributions in disaster epidemiology. Epidemiologic Reviews 27(1):9-12, 2005.

Schonlau M, Mangione-Smith R, Chan KS, Keesey J, Rosen M, Louis TA, Wu SY, Keeler E: Evaluation of a quality improvement collaborative in asthma care: does it improve processes and outcomes of care? Annals of Family Medicine 3(3):200-8, 2005.

Mangione-Smith R, Schonlau M, Chan KS, Keesey J, Rosen M, Louis TA, Keeler E: Measuring the effectiveness of a collaborative for quality improvement in pediatric asthma care: does implementing the chronic care model improve processes and outcomes of care? Ambulatory Pediatrics 5(2):75-82, 2005.

Collins AJ, Kasiske B, Herzog C, Chavers B, Foley R, Gilbertson D, Grimm R, Liu J, Louis T, Manning W, Matas A, McBean M, Murray A, St Peter W, Xue J, Fan Q, Guo H, Li S, Li S, Roberts T, Snyder J, Solid C, Wang C, Weinhandl E, Arko C, Chen SC, Dalleska F, Daniels F, Dunning S, Ebben J, Frazier E, Johnson R, Sheets D, Forrest B, Berrini D, Constantini E, Everson S, Frederick P, Eggers P, Agodoa L, United States Renal Data System: Excerpts from the United States Renal Data System 2004 annual data report: atlas of end-stage renal disease in the United States. American Journal of Kidney Diseases 45(1 Suppl 2):A5-7, 2005.

Wang Z, Louis TA: Marginalized binary mixed-effects models with covariate-dependent random effects and likelihood inference. Biometrics 60(4):884-891, 2004.

Ingall TJ, O'Fallon WM, Asplund K, Goldfrank LR, Hertzberg VS, Louis TA, Christianson TJ: Findings from the reanalysis of the NINDS tissue plasminogen activator for acute ischemic stroke treatment trial. Stroke 35(10):2418-24, 2004.

McCaffrey DF, Lockwood JR, Hamilton L, Koretz D, Louis TA: Let’s see more empirical studies of value-added models of teacher effects: a reply to Raudenbush, Rubin, Stuart and Zanuto. Journal of Behavioral and Educational Statistics 29:139-144, 2004.

McCaffrey DF, Lockwood JR, Hamilton L, Koretz D, Louis TA: Models for value-added modelling of teacher effects. Journal of Behavioral and Educational Statistics 29:67-102, 2004.

Campbell DE, Lynn J, Louis TA, Shugarman LR: Medicare program expenditures associated with hospice use. Annals of Internal Medicine 140(4):269-77, 2004.

Eberly LE, Louis TA: Bayes/frequentist compromise decision rules for Gaussian sampling. Journal of Statistical Planning and Inference 121(2):191-207, 2004.

Aidan McDermott (go to top of document)

Cummings DA, Iamsirithaworn S, Lessler JT, McDermott A, Prasanthong R, Nisalak A, Jarman RG, Burke DS, Gibbons RV: The impact of the demographic transition on dengue in Thailand: insights from a statistical analysis and mathematical modeling. PLoS Medicine 6(9):e1000139, 2009.

Peng RD, Bell ML, Geyh AS, McDermott A, Zeger SL, Samet JM, Dominici F: Emergency admissions for cardiovascular and respiratory diseases and the chemical composition of fine particle air pollution. Environmental Health Perspectives 117(6):957-63, 2009.

Zeger SL, Dominici F, McDermott A, Samet JM: Mortality in the Medicare population and chronic exposure to fine particulate air pollution in urban centers (2000-2005). Environmental Health Perspectives 116(12):1614-9, 2008.

Peng RD, Chang HH, Bell ML, McDermott A, Zeger SL, Samet JM, Dominici F: Coarse particulate matter air pollution and hospital admissions for cardiovascular and respiratory diseases among Medicare patients. Journal of the American Medical Association 299(18):2172-9, 2008.

Eftim SE, Samet JM, Janes H, McDermott A, Dominici F: Fine particulate matter and mortality: a comparison of the Six Cities and American Cancer Society cohorts with a Medicare cohort. Epidemiology 19(2):209-216, 2008.

Dominici F, Peng RD, Bell ML, Pham L, McDermott A, Zeger SL, Samet JM: Fine particulate air pollution and hospital admission for cardiovascular and respiratory diseases. Journal of the American Medical Association 295(10):1127-34, 2006.

Dominici F, McDermott A, Daniels M, Zeger SL, Samet JM: Revised analyses of the National Morbidity, Mortality, and Air Pollution Study: mortality among residents of 90 cities. Journal of Toxicology and Environmental Health A 68(13):1071-92, 2005.

Dominici F, McDermott A, Hastie TJ: Improved semiparametric time series models of air pollution and mortality. Journal of the American Statistical Association 99(468):938-948, 2004.

Bell ML, McDermott A, Zeger SL, Samet JM, Dominici F: Ozone and short-term mortality in 95 US urban communities, 1987-2000. Journal of the American Medical Association 292(19):2372-2378, 2004.

John McGready (go to top of document)

Rosenberg RE, Law JK, Yenokyan G, McGready J, Kaufmann WE, Law PA: Characteristics and concordance of autism spectrum disorders among 277 twin pairs. Archives of Pediatrics and Adolescent Medicine 163(10):907-14, 2009.

Hoover-Fong JE, Schulze KJ, McGready J, Barnes H, Scott CI: Age-appropriate body mass index in children with achondroplasia: interpretation in relation to indexes of height. American Journal of Clinical Nutrition 88(2):364-71, 2008.

Hoover-Fong JE, McGready J, Schulze KJ, Barnes H, Scott CI: Weight for age charts for children with achondroplasia. American Journal of Medical Genetics A 143(19):2227-35, 2007.

Richman JM, Liu SS, Courpas G, Wong R, Rowlingson AJ, McGready J, Cohen SR, Wu CL: Does continuous peripheral nerve block provide superior pain control to opioids? a meta-analysis. Anesthesia and Analgesia 102(1):248-57, 2006.

Slutsman J, Kass N, McGready J, Wynia M: Health information, the HIPAA privacy rule, and health care: what do physicians think? Health Affairs 24(3):832-42, 2005.

Scott PT, Niebuhr DW, McGready JB, Gaydos JC: Hepatitis B immunity in United States military recruits. Journal of Infectious Diseases 191(11):1835-41, 2005.

Bini EJ, McGready J: Prevalence of gallbladder disease among persons with hepatitis C virus infection in the United States. Hepatology 41(5):1029-1036, 2005.

Maxwell LG, Kaufmann SC, Bitzer S, Jackson EV Jr, McGready J, Kost-Byerly S, Kozlowski L, Rothman SK, Yaster M: The effects of a small-dose naloxone infusion on opioid-induced side effects and analgesia in children and adolescents treated with intravenous patient-controlled analgesia: a double-blind, prospective, randomized, controlled study. Anesthesia & Analgesia 100(4):953-8, 2005.

Pidcock FS, Fish DE, Johnson-Greene D, Borras I, McGready J, Silberstein CE: Hip migration percentage in children with cerebral palsy treated with botulinum toxin type A. Archives of Physical Medicine and Rehabilitation 86(3):431-5, 2005.

Schwengel DA, McGready J, Berenholtz SM, Kozlowski LJ, Nichols DG, Yaster M: Peripherally inserted central catheters: a randomized, controlled, prospective trial in pediatric surgical patients. Anesthesia & Analgesia 99(4):1038-43, 2004.

Lucy Meoni (go to top of document)

Malhotra A, Igo RP Jr, Thameem F, Kao WH, Abboud HE, Adler SG, Arar NH, Bowden DW, Duggirala R, Freedman BI, Goddard KA, Ipp E, Iyengar SK, Kimmel PL, Knowler WC, Kohn O, Leehey D, Meoni LA, Nelson RG, Nicholas SB, Parekh RS, Rich SS, Chen YD, Saad MF, Scavini M, Schelling JR, Sedor JR, Shah VO, Taylor KD, Thornley-Brown D, Zager PG, Horvath A, Hanson RL, Family Investigation of Nephropathy and Diabetes Research Group (includes Meoni L): Genome-wide linkage scans for type 2 diabetes mellitus in four ethnically diverse populations-significant evidence for linkage on chromosome 4q in African Americans: the family investigation of nephropathy and diabetes research group. Diabetes/Metabolism Research and Reviews 25(8):740-7, 2009.

Cheng CY, Kao WH, Patterson N, Tandon A, Haiman CA, Harris TB, Xing C, John EM, Ambrosone CB, Brancati FL, Coresh J, Press MF, Parekh RS, Klag MJ, Meoni LA, Hsueh WC, Fejerman L, Pawlikowska L, Freedman ML, Jandorf LH, Bandera EV, Ciupak GL, Nalls MA, Akylbekova EL, Orwoll ES, Leak TS, Miljkovic I, Li R, Ursin G, Bernstein L, Ardlie K, Taylor HA, Boerwinckle E, Zmuda JM, Henderson BE, Wilson JG, Reich D: Admixture mapping of 15,280 African Americans identifies obesity susceptibility Loci on chromosomes 5 and X. PLoS Genetics 5(5):e1000490, 2009.

Wittink MN, Morales KH, Meoni LA, Ford DE, Wang NY, Klag MJ, Gallo JJ: Stability of preferences for end-of-life treatment after 3 years of follow-up: the Johns Hopkins Precursors Study. Archives of Internal Medicine 168(19):2125-30, 2008.

Kao WH, Klag MJ, Meoni LA, Reich D, Berthier-Schaad Y, Li M, Coresh J, Patterson N, Tandon A, Powe NR, Fink NE, Sadler JH, Weir MR, Abboud HE, Adler SG, Divers J, Iyengar SK, Freedman BI, Kimmel PL, Knowler WC, Kohn OF, Kramp K, Leehey DJ, Nicholas SB, Pahl MV, Schelling JR, Sedor JR, Thornley-Brown D, Winkler CA, Smith MW, Parekh RS, Family Investigation of Nephropathy and Diabetes Research Group: MYH9 is associated with nondiabetic end-stage renal disease in African Americans. Nature Genetics 40(10):1185-92, 2008.

Arar NH, Freedman BI, Adler SG, Iyengar SK, Chew EY, Davis MD, Satko SG, Bowden DW, Duggirala R, Elston RC, Guo X, Hanson RL, Igo RP Jr, Ipp E, Kimmel PL, Knowler WC, Molineros J, Nelson RG, Pahl MV, Quade SR, Rasooly RS, Rotter JI, Saad MF, Scavini M, Schelling JR, Sedor JR, Shah VO, Zager PG, Abboud HE, Family Investigation of Nephropathy and Diabetes Research Group (includes Meoni L): Heritability of the severity of diabetic retinopathy: the FIND-Eye study. Investigative Ophthalmology and Visual Science 49(9):3839-45, 2008.

Wang NY, Young JH, Meoni LA, Ford DE, Erlinger TP, Klag MJ: Blood pressure change and risk of hypertension associated with parental hypertension: The Johns Hopkins Precursors Study. Archives of Internal Medicine 168(6):643-8, 2008.

Parekh RS, Kao WH, Meoni LA, Ipp E, Kimmel PL, La Page J, Fondran C, Knowler WC, Klag MJ, Family Investigation of Nephropathy and Diabetes Research Group: Reliability of urinary albumin, total protein, and creatinine assays after prolonged storage: the Family Investigation of Nephropathy and Diabetes. Clinical Journal of the American Society of Nephrology 2(6):1156-62, 2007.

Iyengar SK, Abboud HE, Goddard KA, Saad MF, Adler SG, Arar NH, Bowden DW, Duggirala R, Elston RC, Hanson RL, Ipp E, Kao WH, Kimmel PL, Klag MJ, Knowler WC, Meoni LA, Nelson RG, Nicholas SB, Pahl MV, Parekh RS, Quade SR, Rich SS, Rotter JI, Scavini M, Schelling JR, Sedor JR, Sehgal AR, Shah VO, Smith MW, Taylor KD, Winkler CA, Zager PG, Freedman BI, Family Investigation of Nephropathy and Diabetes Research Group: Genome-wide scans for diabetic nephropathy and albuminuria in multiethnic populations: the family investigation of nephropathy and diabetes (FIND). Diabetes 56(6):1577-85, 2007.

Kittleson MM, Meoni LA, Wang NY, Chu AY, Ford DE, Klag MJ: Association of childhood socioeconomic status with subsequent coronary heart disease in physicians. Archives of Internal Medicine 166(21):2356-61, 2006.

Barone BB, Clark JM, Wang NY, Meoni LA, Klag MJ, Brancati FL: Lifetime weight patterns in male physicians: the effects of cohort and selective survival. Obesity 14(5):902-8, 2006.

Miller RG, Chretien KC, Meoni LA, Liu YP, Klag MJ, Levine MA: Comparison of intravenous pamidronate to standard therapy for osteoporosis: use in patients unable to take oral bisphosphonates. Journal of Clinical Rheumatology 11(1):2-7, 2005.

Boulware LE, Meoni LA, Fink NE, Parekh RS, Kao WH, Klag MJ, Powe NR: Preferences, knowledge, communication and patient-physician discussion of living kidney transplantation in African American families. American Journal of Transplantation 5(6):1503-12, 2005.

Torre DM, Wang NY, Meoni LA, Young JH, Klag MJ, Ford DE: Suicide compared to other causes of mortality in physicians. Suicide & Life-Threatening Diseases 35(2):146-53, 2005.

Lucas KE, Rowe PC, Coresh J, Klag MJ, Meoni LA, Ford DE: Prospective association between hypotension and idiopathic chronic fatigue. Journal of Hypertension 22(4):691-5, 2004.

Straton JB, Wang NY, Meoni LA, Ford DE, Klag MJ, Casarett D, Gallo JJ: Physical functioning, depression, and preferences for treatment at the end of life: the Johns Hopkins Precursors Study. Journal of the American Geriatrics Society 52(4):577-82, 2004.

Giovanni Parmigiani (go to top of document)

Wang W, Niendorf KB, Patel D, Blackford A, Marroni F, Sober AJ, Parmigiani G, Tsao H: Estimating CDKN2A carrier probability and personalizing cancer risk assessments in hereditary melanoma using MelaPRO. Cancer Research 70(2):552-9, 2010.

Blackford A, Serrano OK, Wolfgang CL, Parmigiani G, Jones S, Zhang X, Parsons DW, Lin JC, Leary RJ, Eshleman JR, Goggins M, Jaffee EM, Iacobuzio-Donahue CA, Maitra A, Cameron JL, Olino K, Schulick R, Winter J, Herman JM, Laheru D, Klein AP, Vogelstein B, Kinzler KW, Velculescu VE, Hruban RH: SMAD4 gene mutations are associated with poor prognosis in pancreatic cancer. Clinical Cancer Research 15(14):4674-9, 2009.

Guda K, Moinova H, He J, Jamison O, Ravi L, Natale L, Lutterbaugh J, Lawrence E, Lewis S, Willson JK, Lowe JB, Wiesner GL, Parmigiani G, Barnholtz-Sloan J, Dawson DW, Velculescu VE, Kinzler KW, Papadopoulos N, Vogelstein B, Willis J, Gerken TA, Markowitz SD: Inactivating germ-line and somatic mutations in polypeptide N-acetylgalactosaminyltransferase 12 in human colon cancers. Proceedings of the National Academy of Sciences 106(31):12921-5, 2009.

Lin X, Asfari B, Marchionni L, Cope L, Parmigiani G, Naiman D, Geman D: The ordering of expression among a few genes can provide simple cancer biomarkers and signal BRCA1 mutations. BMC Bioinformatics 10(1):256, 2009.

Zhou XK, Clyde MA, Garrett J, Lourdes V, O'Connell M, Parmigiani G, Turner DJ, Wiles T: Statistical methods for automated drug susceptibility testing: Bayesian minimum inhibitory concentration prediction from growth curves. Annals of Applied Statistics 3(2):710-730, 2009.

Caffo BS, Liu D, Scharpf RB, Parmigiani G: Likelihood estimation of conjugacy relationships in linear models with applications to high-throughput genomics. International Journal of Biostatistics 5(1):Article 18, 2009.

Daniel VC, Marchionni L, Hierman JS, Rhodes JT, Devereux WL, Rudin CM, Yung R, Parmigiani G, Dorsch M, Peacock CD, Watkins DN: A primary xenograft model of small-cell lung cancer reveals irreversible changes in gene expression imposed by culture in vitro. Cancer Research 69(8):3364-73, 2009.

Blackford A, Parmigiani G, Kensler TW, Wolfgang C, Jones S, Zhang X, Parsons DW, Lin JC, Leary RJ, Eshleman JR, Goggins M, Jaffee EM, Iacobuzio-Donahue CA, Maitra A, Klein A, Cameron JL, Olino K, Schulick R, Winter J, Vogelstein B, Velculescu VE, Kinzler KW, Hruban RH: Genetic mutations associated with cigarette smoking in pancreatic cancer. Cancer Research 69(8):3681-8, 2009.

He X, Marchionni L, Hansel DE, Yu W, Sood A, Yang J, Parmigiani G, Matsui W, Berman DM: Differentiation of a highly tumorigenic basal cell compartment in urothelial carcinoma. Stem Cells 27(7):1487-1495, 2009.

Jones S, Hruban RH, Kamiyama M, Borges M, Zhang X, Parsons DW, Lin JC, Palmisano E, Brune K, Jaffee EM, Iacobuzio-Donahue CA, Maitra A, Parmigiani G, Kern SE, Velculescu VE, Kinzler KW, Vogelstein B, Eshleman JR, Goggins M, Klein AP: Exomic sequencing identifies PALB2 as a pancreatic cancer susceptibility gene. Science 324(5924):217, 2009.

Parmigiani G, Boca S, Lin J, Kinzler KW, Velculescu V, Vogelstein B: Design and analysis issues in genome-wide somatic mutation studies of cancer. Genomics 93(1):17-21, 2009.

Chen S, Blackford AL, Parmigiani G: Tailoring BRCAPRO to Asian-Americans. Journal of Clinical Oncology 27(4):642-3, 2009.

Braun R, Cope L, Parmigiani G: Identifying differential correlation in gene/pathway combinations. BMC Bioinformatics 9:488, 2008.

Kortenhorst MS, Zahurak M, Shabbeer S, Kachhap S, Galloway N, Parmigiani G, Verheul HM, Carducci MA: A multiple-loop, double-cube microarray design applied to prostate cancer cell lines with variable sensitivity to histone deacetylase inhibitors. Clinical Cancer Research 14(21):6886-94, 2008.

Leary RJ, Lin JC, Cummins J, Boca S, Wood LD, Parsons DW, Jones S, Sjoblom T, Park BH, Parsons R, Willis J, Dawson D, Willson JK, Nikolskaya T, Nikolsky Y, Kopelovich L, Papadopoulos N, Pennacchio LA, Wang TL, Markowitz SD, Parmigiani G, Kinzler KW, Vogelstein B, Velculescu VE: Integrated analysis of homozygous deletions, focal amplifications, and sequence alterations in breast and colorectal cancers. Proceedings of the National Academy of Sciences 105(42):16224-9, 2008.

Iversen ES, Parmigiani G, Chen S: Multiple model evaluation absent the gold standard through model combination. Journal of the American Statistical Association 103(483):897-909, 2008.

Jones S, Zhang X, Parsons DW, Lin JC, Leary RJ, Angenendt P, Mankoo P, Carter H, Kamiyama H, Jimeno A, Hong SM, Fu B, Lin MT, Calhoun ES, Kamiyama M, Walter K, Nikolskaya T, Nikolsky Y, Hartigan J, Smith DR, Hidalgo M, Leach SD, Klein AP, Jaffee EM, Goggins M, Maitra A, Iacobuzio-Donahue C, Eshleman JR, Kern SE, Hruban RH, Karchin R, Papadopoulos N, Parmigiani G, Vogelstein B, Velculescu VE, Kinzler KW: Core signaling pathways in human pancreatic cancers revealed by global genomic analyses. Science 321(5897):1801-6, 2008.

Parsons DW, Jones S, Zhang X, Lin JC, Leary RJ, Angenendt P, Mankoo P, Carter H, Siu IM, Gallia GL, Olivi A, McLendon R, Rasheed BA, Keir S, Nikolskaya T, Nikolsky Y, Busam DA, Tekleab H, Diaz LA Jr, Hartigan J, Smith DR, Strausberg RL, Marie SK, Shinjo SM, Yan H, Riggins GJ, Bigner DD, Karchin R, Papadopoulos N, Parmigiani G, Vogelstein B, Velculescu VE, Kinzler KW: An integrated genomic analysis of human glioblastoma multiforme. Science 321(5897):1807-12, 2008.

Pattaro C, Ruczinski I, Fallin DM, Parmigiani G: Haplotype block partitioning as a tool for dimensionality reduction in SNP association studies. BMC Genomics 9(1):405, 2008.

Yang Z, Stratton C, Francis PJ, Kleinman ME, Tan PL, Gibbs D, Tong Z, Chen H, Constantine R, Yang X, Chen Y, Zeng J, Davey L, Ma X, Hau VS, Wang C, Harmon J, Buehler J, Pearson E, Patel S, Kaminoh Y, Watkins S, Luo L, Zabriskie NA, Bernstein PS, Cho W, Schwager A, Hinton DR, Klein ML, Hamon SC, Simmons E, Yu B, Campochiaro B, Sunness JS, Campochiaro P, Jorde L, Parmigiani G, Zack DJ, Katsanis N, Ambati J, Zhang K: Toll-like receptor 3 and geographic atrophy in age-related macular degeneration. New England Journal of Medicine 359(14):1456-63, 2008.

Venturini S, Dominici F, Parmigiani G: Gamma shape mixtures for heavy-tailed distributions. Annals of Applied Statistics 2(2):756-776, 2008.

Scharpf RB, Parmigiani G, Pevsner J, Ruczinski I: Hidden Markov models for the assessment of chromosomal alterations using high-throughput SNP arrays. Annals of Applied Statistics 2(2):687-713, 2008.

Dominici F, Wang C, Crainiceanu C, Parmigiani G: Model selection and health effect estimation in environmental epidemiology. Epidemiology 19(4):558-60, 2008.

Tai YC, Chen S, Parmigiani G, Klein AP: Incorporating tumor immunohistochemical markers in BRCA1 and BRCA2 carrier prediction. Breast Cancer Research 10(2):401, 2008.

Katki HA, Blackford A, Chen S, Parmigiani G: Multiple diseases in carrier probability estimation: Accounting for surviving all cancers other than breast and ovary in BRCAPRO. Statistics in Medicine 27(22):4532-4548, 2008.

Garrett-Mayer E, Parmigiani G, Zhong X, Cope L, Gabrielson E: Cross-study validation and combined analysis of gene expression microarray data. Biostatistics 9(2):333-54, 2008.

Parmigiani G, Chen S: TRAB: testing whether mutation frequencies are above an unknown background. Statistical Applications in Genetics and Molecular Biology 7:Article11, 2008.

Jones S, Chen WD, Parmigiani G, Diehl F, Beerenwinkel N, Antal T, Traulsen A, Nowak MA, Siegel C, Velculescu VE, Kinzler KW, Vogelstein B, Willis J, Markowitz SD: Comparative lesion sequencing provides insights into tumor evolution. Proceedings of the National Academy of Sciences 105(11):4283-8, 2008.

Mullins C, Lucia MS, Hayward SW, Lee JY, Levitt JM, Lin VK, Liu BC, Chinnaiyan AM, Rubin MA, Slawin K, Star RA, Getzenberg RH, MPSA Consortium (includes Parmigiani G): A comprehensive approach toward novel serum biomarkers for benign prostatic hyperplasia: the MPSA Consortium. Journal of Urology 179(4):1243-56, 2008.

Barber TD, McManus K, Yuen KW, Reis M, Parmigiani G, Shen D, Barrett I, Nouhi Y, Spencer F, Markowitz S, Velculescu VE, Kinzler KW, Vogelstein B, Lengauer C, Hieter P: Chromatid cohesion defects may underlie chromosome instability in human colorectal cancers. Proceedings of the National Academy of Sciences 105(9):3443-8, 2008.

Marchionni L, Wilson RF, Wolff AC, Marinopoulos S, Parmigiani G, Bass EB, Goodman SN: Systematic review: gene expression profiling assays in early-stage breast cancer. Annals of Internal Medicine 148(5):358-69, 2008.

Marchionni L, Wilson RF, Marinopoulos SS, Wolff AC, Parmigiani G, Bass EB, Goodman SN: Impact of gene expression profiling tests on breast cancer outcomes. Evidence Report/Technology Assessment 160:1-105, 2007.

Ho YY, Cope L, Dettling M, Parmigiani G: Statistical methods for identifying differentially expressed gene combinations. Methods in Molecular Biology 408:171-91, 2007.

Scharpf RB, Iacobuzio-Donahue CA, Sneddon JB, Parmigiani G: When should one subtract background fluorescence in 2-color microarrays? Biostatistics 8(4):695-707, 2007.

Dahinden C, Parmigiani G, Emerick MC, Buhlmann P: Penalized likelihood for sparse contingency tables with an application to full-length cDNA libraries. BMC Bioinformatics 8(1):476, 2007.

Tai YC, Domchek S, Parmigiani G, Chen S: Breast cancer risk among male BRCA1 and BRCA2 mutation carriers. Journal of the National Cancer Institute 99(23):1811-4, 2007.

Iversen ES Jr, Katki HA, Chen S, Berry DA, Parmigiani G: Letter re: Limited family structure and breast cancer risk. Journal of the American Medical Association 298(17):2007, 2007.

Wood LD, Parsons DW, Jones S, Lin J, Sjoblom T, Leary RJ, Shen D, Boca SM, Barber T, Ptak J, Silliman N, Szabo S, Dezso Z, Ustyanksky V, Nikolskaya T, Nikolsky Y, Karchin R, Wilson PA, Kaminker JS, Zhang Z, Croshaw R, Willis J, Dawson D, Shipitsin M, Willson JK, Sukumar S, Polyak K, Park BH, Pethiyagoda CL, Pant PV, Ballinger DG, Sparks AB, Hartigan J, Smith DR, Suh E, Papadopoulos N, Buckhaults P, Markowitz SD, Parmigiani G, Kinzler KW, Velculescu VE, Vogelstein B: The genomic landscapes of human breast and colorectal cancers. Science 318(5853):1108-1113, 2007.

Oliveira JL, Aguiar-Oliveira MH, D'Oliveira A Jr, Pereira RM, Oliveira CR, Farias CT, Barreto-Filho JA, Anjos-Andrade FD, Marques-Santos C, Nascimento-Junior AC, Alves EO, Oliveira FT, Campos VC, Ximenes R, Blackford A, Parmigiani G, Salvatori R: Congenital growth hormone (GH) deficiency and atherosclerosis: effects of GH replacement in GH-naive adults. Journal of Clinical Endocrinology and Metabolism 92(12):4664-70, 2007.

Parmigiani G, Chen S, Iversen ES Jr, Friebel TM, Finkelstein DM, Anton-Culver H, Ziogas A, Weber BL, Eisen A, Malone KE, Daling JR, Hsu L, Ostrander EA, Peterson LE, Schildkraut JM, Isaacs C, Corio C, Leondaridis L, Tomlinson G, Amos CI, Strong LC, Berry DA, Weitzel JN, Sand S, Dutson D, Kerber R, Peshkin BN, Euhus DM: Validity of models for predicting BRCA1 and BRCA2 mutations. Annals of Internal Medicine 147(7):441-50, 2007.

Wu F, Dassopoulos T, Cope L, Maitra A, Brant SR, Harris ML, Bayless TM, Parmigiani G, Chakravarti S: Genome-wide gene expression differences in Crohn's disease and ulcerative colitis from endoscopic pinch biopsies: insights into distinctive pathogenesis. Inflammatory Bowel Diseases 13(7):807-21, 2007.

Zahurak M, Parmigiani G, Yu W, Scharpf R, Berman D, Schaeffer E, Shabbeer S, Cope L: Pre-processing Agilent microarray data. BMC Bioinformatics 8(1):142 , 2007.

Lin J, Gan CM, Zhang X, Jones S, Sjoblom T, Wood LD, Parsons DW, Papadopoulos N, Kinzler KW, Vogelstein B, Parmigiani G, Velculescu VE: A multidimensional analysis of genes mutated in breast and colorectal cancers. Genome Research 17(9):1304-18, 2007.

Wang W, Chen S, Brune KA, Hruban RH, Parmigiani G, Klein AP: PancPRO: risk assessment for individuals with a family history of pancreatic cancer. Journal of Clinical Oncology 25(11):1417-22, 2007.

Chen S, Parmigiani G: Meta-analysis of BRCA1 and BRCA2 penetrance. Journal of Clinical Oncology 25(11):1329-33, 2007.

Dominici F, Zeger SL, Parmigiani G, Katz J, Christian P: Does the effect of micronutrient supplementation on neonatal survival vary with respect to the percentiles of the birth weight distribution? Bayesian Analysis 2(1):1-30, 2007.

Emerick MC, Parmigiani G, Agnew WS: Multivariate analysis and visualization of splicing correlations in single-gene transcriptomes. BMC Bionformatics 8:16, 2007.

Bettegowda C, Huang X, Lin J, Cheong I, Kohli M, Szabo SA, Zhang X, Diaz LA Jr, Velculescu VE, Parmigiani G, Kinzler KW, Vogelstein B, Zhou S: The genome and transcriptomes of the anti-tumor agent Clostridium novyi-NT. Nature Biotechnology 24(12):1573-1580, 2006.

Salvatori R, Serpa MG, Parmigiani G, Britto AV, Oliveira JL, Oliveira CR, Prado CM, Farias CT, Almeida JC, Vicente TA, Aguiar-Oliveira MH: GH response to hypoglycemia and clonidine in the GH-releasing hormone resistance syndrome. Journal of Endocrinological Investigation 29(9):805-8, 2006.

Hayes DN, Monti S, Parmigiani G, Gilks CB, Naoki K, Bhattacharjee A, Socinski MA, Perou C, Meyerson M: Gene expression profiling reveals reproducible human lung adenocarcinoma subtypes in multiple independent patient cohorts. Journal of Clinical Oncology 24(31):5079-90, 2006.

Chen S, Wang W, Lee S, Nafa K, Lee J, Romans K, Watson P, Gruber SB, Euhus D, Kinzler KW, Jass J, Gallinger S, Lindor NM, Casey G, Ellis N, Giardiello FM, Offit K, Parmigiani G, Colon Cancer Family Registry: Prediction of germline mutations and cancer risk in the Lynch syndrome. Journal of the American Medical Association 296(12):1479-87, 2006.

Sjoblom T, Jones S, Wood LD, Parsons DW, Lin J, Barber TD, Mandelker D, Leary RJ, Ptak J, Silliman N, Szabo S, Buckhaults P, Farrell C, Meeh P, Markowitz SD, Willis J, Dawson D, Willson JK, Gazdar AF, Hartigan J, Wu L, Liu C, Parmigiani G, Park BH, Bachman KE, Papadopoulos N, Vogelstein B, Kinzler KW, Velculescu VE: The consensus coding sequences of human breast and colorectal cancers. Science 314(5797):268-74, 2006.

Favorova OO, Favorov AV, Boiko AN, Andreewski TV, Sudomoina MA, Alekseenkov AD, Kulakova OG, Gusev EI, Parmigiani G, Ochs MF: Three allele combinations associated with multiple sclerosis. BMC Medical Genetics 7(1):63, 2006.

Dominici F, Zeger SL, Parmigiani G, Katz J, Christian P: Estimating percentile-specific treatment effects in counterfactual models: a case-study of micronutrient supplementation, birth weight and infant mortality. Applied Statistics 55(2):261-280, 2006.

Gandhi TK, Zhong J, Mathivanan S, Karthick L, Chandrika KN, Mohan SS, Sharma S, Pinkert S, Nagaraju S, Periaswamy B, Mishra G, Nandakumar K, Shen B, Deshpande N, Nayak R, Sarker M, Boeke JD, Parmigiani G, Schultz J, Bader JS, Pandey A: Analysis of the human protein interactome and comparison with yeast, worm and fly interaction datasets. Nature Genetics 38(3):285-93, 2006.

Zilliox MJ, Parmigiani G, Griffin DE: Gene expression patterns in dendritic cells infected with measles virus compared with other pathogens. Proceedings of the National Academy of Sciences 103(9):3363-3368, 2006.

Chen S, Iversen ES, Friebel T, Finkelstein D, Weber BL, Eisen A, Peterson LE, Schildkraut JM, Isaacs C, Peshkin BN, Corio C, Leondaridis L, Tomlinson G, Dutson D, Kerber R, Amos CI, Strong LC, Berry DA, Euhus DM, Parmigiani G: Characterization of BRCA1 and BRCA2 mutations in a large United States sample. Journal of Clinical Oncology 24(6):863-71, 2006.

Dettling M, Gabrielson E, Parmigiani G: Searching for differentially expressed gene combinations. Genome Biology 6(10):R88, 2005.

Shih IeM, Sheu JJ, Santillan A, Nakayama K, Yen MJ, Bristow RE, Vang R, Parmigiani G, Kurman RJ, Trope CG, Davidson B, Wang TL: Amplification of a chromatin remodeling gene, Rsf-1/HBXAP, in ovarian carcinoma. Proceedings of the National Academy of Sciences 102(39):14004-9, 2005.

Favorov AV, Andreewski TV, Sudomoina MA, Favorova OO, Parmigiani G, Ochs MF: A Markov chain Monte Carlo technique for identification of combinations of allelic variants underlying complex diseases in humans. Genetics 171(4):2113-21, 2005.

Chen S, Watson P, Parmigiani G: Accuracy of MSI testing in predicting germline mutations of MSH2 and MLH1: a case study in Bayesian meta-analysis of diagnostic tests without a gold standard. Biostatistics 6(3):450-64, 2005.

Inoue LYT, Berry DA, Parmigiani G: Relationship between Bayesian and frequentist sample size determination. The American Statistician 59(1):79-87, 2005.

Molina H, Parmigiani G, Pandey A: Assessing reproducibility of a protein dynamics study using in vivo labeling and liquid chromatography tandem mass spectrometry. Analytical Chemistry 77(9):2739-2744, 2005.

Skinner CS, Rawl SM, Moser BK, Buchanan AH, Scott LL, Champion VL, Schildkraut JM, Parmigiani G, Clark S, Lobach DF, Bastian LA: Impact of the Cancer Risk Intake System on patient-clinician discussions of tamoxifen, genetic counseling, and colonoscopy. Journal of General Internal Medicine 20(4):360-5, 2005.

Zhou X, Iversen ES, Parmigiani G: Classification of missense mutations of disease genes. Journal of the American Statistical Association 100(469):51-60, 2005.

Shen Y, Parmigiani G: A model-based comparison of breast cancer screening strategies: mammograms and clinical breast examinations. Cancer Epidemiology, Biomarkers & Prevention 14(2):529-32, 2005.

Garrett ES, Parmigiani G: A nested unsupervised approach to identifying novel molecular subtypes. Bernoulli 10(6):951-969, 2004.

Kittleson MM, Ye SQ, Irizarry RA, Minhas KM, Edness G, Conte JV, Parmigiani G, Miller LW, Chen Y, Hall JL, Garcia JG, Hare JM: Identification of a gene expression profile that differentiates between ischemic and nonischemic cardiomyopathy. Circulation 110(22):3444-51, 2004.

Muller P, Parmigiani G, Robert C, Rousseau J: Optimal sample size for multiple testing: the case of gene expression microarrays. Journal of the American Statistical Association 99(468):990-1001, 2004.

Cope L, Zhong X, Garrett-Mayer ES, Parmigiani G: MergeMaid: R tools for merging and cross-study validation of gene expression data. Statistical Applications in Genetics and Molecular Biology 3(1):Article 29, 2004.

Marroni F, Aretini P, D'Andrea E, Caligo MA, Cortesi L, Viel A, Ricevuto E, Montagna M, Cipollini G, Federico M, Santarosa M, Marchetti P, Bailey-Wilson JE, Bevilacqua G, Parmigiani G, Presciuttini S: Penetrances of breast and ovarian cancer in a large series of families tested for BRCA1/2 mutations. European Journal of Human Genetics 12(11):899-906, 2004.

Hackam AS, Qian J, Liu D, Gunatilaka T, Farkas RH, Chowers I, Kageyama M, Parmigiani G, Zack DJ: Comparative gene expression analysis of murine retina and brain. Molecular Vision 10:637-49, 2004.

Chen S, Wang W, Broman KW, Katki H, Parmigiani G: BayesMendel: an R environment for Mendelian risk prediction. Statistical Applications in Genetics and Molecular Biology 3(1):Article 12, 2004.

Hackam AS, Strom R, Liu D, Qian J, Wang C, Otteson D, Gunatilaka T, Farkas RH, Chowers I, Kageyama M, Leveillard T, Sahel JA, Campochiaro PA, Parmigiani G, Zack DJ: Identification of gene expression changes associated with the progression of retinal degeneration in the rd1 Mouse. Investigative Ophthalmology and Vision Sciences 45(9):2929-42, 2004.

Wang Z, Shen D, Parsons DW, Bardelli A, Sager J, Szabo S, Ptak J, Silliman N, Peters BA, Van Der Heijden MS, Parmigiani G, Yan H, Wang TL, Riggins G, Powell SM, Willson JK, Markowitz S, Kinzler KW, Vogelstein B, Velculescu VE: Mutational analysis of the tyrosine phosphatome in colorectal cancers. Science 304(5674):1164-6, 2004.

Parmigiani G, Garrett E, Anbazhagan R, Gabrielson E: Molecular classification of lung cancer: a cross-platform comparison of gene expression data sets. Chest 125(5 Suppl):103S, 2004.

Parmigiani G, Garrett-Mayer ES, Anbazhagan R, Gabrielson E: A cross-study comparison of gene expression studies for the molecular classification of lung cancer. Clinical Cancer Research 10(9):2922-7, 2004.

Marroni F, Aretini P, D'Andrea E, Caligo MA, Cortesi L, Viel A, Ricevuto E, Montagna M, Cipollini G, Ferrari S, Santarosa M, Bisegna R, Bailey-Wilson JE, Bevilacqua G, Parmigiani G, Presciuttini S: Evaluation of widely used models for predicting BRCA1 and BRCA2 mutations. Journal of Medical Genetics 41(4):278-85, 2004.

Mehrotra J, Ganpat MM, Kanaan Y, Fackler MJ, McVeigh M, Lahti-Domenici J, Polyak K, Argani P, Naab T, Garrett E, Parmigiani G, Broome C, Sukumar S: Estrogen receptor/progesterone receptor-negative breast cancers of young African-American women have a higher frequency of methylation of multiple genes than those of Caucasian women. Clinical Cancer Research 10(6):2052-7, 2004.

Parmigiani G: Uncertainty and the value of diagnostic information, with application to axillary lymph node dissection in breast cancer. Statistics in Medicine 23(5):843-55, 2004.

Dang LH, Bettegowda C, Agrawal N, Cheong I, Huso D, Frost P, Loganzo F, Greenberger L, Barkoczy J, Pettit GR, Smith AB 3rd, Gurulingappa H, Khan S, Parmigiani G, Kinzler KW, Zhou S, Vogelstein B: Targeting vascular and avascular compartments of tumors with C. novyi-NT and anti-microtubule agents. Cancer Biology and Therapy 3(3):326-37, 2004.

Wang TL, Diaz LA Jr, Romans K, Bardelli A, Saha S, Galizia G, Choti M, Donehower R, Parmigiani G, Shih IeM, Iacobuzio-Donahue C, Kinzler KW, Vogelstein B, Lengauer C, Velculescu VE: Digital karyotyping identifies thymidylate synthase amplification as a mechanism of resistance to 5-fluorouracil in metastatic colorectal cancer patients. Proceedings of the National Academy of Sciences 101(9):3089-94, 2004.

Roger Peng (go to top of document)

Katsouyanni K, Samet JM, Anderson HR, Atkinson R, Le Tertre A, Medina S, Samoli E, Touloumi G, Burnett RT, Krewski D, Ramsay T, Dominici F, Peng RD, Schwartz J, Zanobetti A, HEI Health Review Committee: Air pollution and health: a European and North American approach (APHENA). Research Report (Health Effects Institute) 142:5-90, 2009.

Bell ML, Peng RD, Dominici F, Samet JM: Emergency hospital admissions for cardiovascular diseases and ambient levels of carbon monoxide: results for 126 United States urban counties, 1999-2005. Circulation 120(11):949-55, 2009.

Bell ML, Ebisu K, Peng RD, Dominici F: Adverse health effects of particulate air pollution: modification by air conditioning. Epidemiology 20(5):682-6, 2009.

Peng RD, Bell ML, Geyh AS, McDermott A, Zeger SL, Samet JM, Dominici F: Emergency admissions for cardiovascular and respiratory diseases and the chemical composition of fine particle air pollution. Environmental Health Perspectives 117(6):957-63, 2009.

Bell ML, Ebisu K, Peng RD, Samet JM, Dominici F: Hospital admissions and chemical composition of fine particle air pollution. American Journal of Respiratory and Critical Care Medicine 179(12):1115-20, 2009.

Peng RD: Reproducible research and Biostatistics. Biostatistics 10(3):405-8, 2009.

Welty LJ, Peng RD, Zeger SL, Dominici F: Bayesian distributed lag models: estimating effects of particulate matter air pollution on daily mortality. Biometrics 65(1):282-91, 2009.

Eckel SP, Peng RD: Interacting with local and remote data repositories using the stashR package. Computational Statistics 24(2):247-254, 2009.

Peng RD, Dominici F, Welty LJ: Bayesian hierarchical distributed lag model for estimating the time course of risk of hospitalization associated with particulate matter air pollution. Applied Statistics 58(1):3-24, 2008.

Samoli E, Peng R, Ramsay T, Pipikou M, Touloumi G, Dominici F, Burnett R, Cohen A, Krewski D, Samet J, Katsouyanni K: Acute effects of ambient particulate matter on mortality in Europe and North America: results from the APHENA study. Environmental Health Perspectives 116(11):1480-6, 2008.

Bell ML, Ebisu K, Peng RD, Walker J, Samet JM, Zeger SL, Dominici F: Seasonal and regional short-term effects of fine particles on hospital admissions in 202 US counties, 1999-2005. American Journal of Epidemiology 168(11):1301-10, 2008.

Peng RD, Chang HH, Bell ML, McDermott A, Zeger SL, Samet JM, Dominici F: Coarse particulate matter air pollution and hospital admissions for cardiovascular and respiratory diseases among Medicare patients. Journal of the American Medical Association 299(18):2172-9, 2008.

Dominici F, Peng RD, Ebisu K, Zeger SL, Samet JM, Bell ML: Does the effect of PM(10) on mortality depend on PM nickel and vanadium content? a reanalysis of the NMMAPS data. Environmental Health Perspectives 115(12):1701-3, 2007.

Dominici F, Peng RD, Zeger SL, White RH, Samet JM: Particulate air pollution and mortality in the United States: did the risks change from 1987 to 2000? American Journal of Epidemiology 166(8):880-8, 2007.

Peng RD: Interacting with data using the filehash package. R News 6(4):19-24, 2006.

Peng RD, Dominici F, Zeger SL: Reproducible epidemiologic research. American Journal of Epidemiology 163(9):783-9, 2006.

Bell ML, Peng RD, Dominici F: The exposure-response curve for ozone and risk of mortality and the adequacy of current ozone regulations. Environmental Health Perspectives 114(4):532-6, 2006.

Zeger SL, Irizarry R, Peng RD: On time series analysis of public health and biomedical data. Annual Review of Public Health 27:57-79, 2006.

Dominici F, Peng RD, Bell ML, Pham L, McDermott A, Zeger SL, Samet JM: Fine particulate air pollution and hospital admission for cardiovascular and respiratory diseases. Journal of the American Medical Association 295(10):1127-34, 2006.

Peng RD, Dominici F, Louis TA: Model choice in time series studies of air pollution and mortality. Journal of the Royal Statistical Society-A 169(2):179-203, 2006.

Peng RD, Schoenberg FP, Woods JA: A space-time conditional intensity model for evaluating a wildfire hazard index. Journal of the American Statistical Association 100(469):26-35, 2005.

Peng RD, Dominici F, Pastor-Barriuso R, Zeger SL, Samet JM: Seasonal analyses of air pollution and mortality in 100 US cities. American Journal of Epidemiology 161(6):585-94, 2005.

Peng RD, Welty LJ: The NMMAPS data package. R News 4(2):10-14, 2004.

Luu Pham (go to top of document)

Koenig MA, Grega MA, Bailey MM, Pham LD, Zeger SL, Baumgartner WA, McKhann GM: Statin use and neurologic morbidity after coronary artery bypass grafting: A cohort study. Neurology 73(24):2099-106, 2009.

Setse R, Grogan R, Pham L, Cooper LA, Strobino D, Powe NR, Nicholson W: Longitudinal study of depressive symptoms and health-related quality of life during pregnancy and after delivery: the Health Status in Pregnancy (HIP) study. Maternal and Child Health Journal 13(5):577-87, 2009.

Selnes OA, Grega MA, Bailey MM, Pham LD, Zeger SL, Baumgartner WA, McKhann GM: Do management strategies for coronary artery disease influence 6-year cognitive outcomes? Annals of Thoracic Surgery 88(2):445-454, 2009.

McKhann GM, Selnes OA, Grega MA, Bailey MM, Pham LD, Baumgartner WA, Zeger SL: Subjective memory symptoms in surgical and nonsurgical coronary artery patients: 6-year follow-up. Annals of Thoracic Surgery 87(1):27-34, 2009.

Kim HS, Czuczman GJ, Nicholson WK, Pham LD, Richman JM: Pain levels within 24 hours after UFE: a comparison of morphine and fentanyl patient-controlled analgesia. Cardiovascular and Interventional Radiology 31(6):1100-7, 2008.

Walker J, Winkelstein M, Land C, Lewis-Boyer L, Quartey R, Pham L, Butz A: Factors that influence quality of life in rural children with asthma and their parents. Journal of Pediatric Health Care 22(6):343-50, 2008.

Guilarte TR, Burton NC, McGlothan JL, Verina T, Zhou Y, Alexander M, Pham L, Griswold M, Wong DF, Syversen T, Schneider JS: Impairment of nigrostriatal dopamine neurotransmission by manganese is mediated by pre-synaptic mechanism(s): implications to manganese-induced parkinsonism. Journal of Neurochemistry 107(5):1236-47, 2008.

Selnes OA, Grega MA, Bailey MM, Pham LD, Zeger SL, Baumgartner WA, McKhann GM: Cognition 6 years after surgical or medical therapy for coronary artery disease. Annals of Neurology 63(5):581-90, 2008.

Kim HS, Preece SR, Black JH, Pham LD, Streiff MB: Safety of catheter-directed thrombolysis for deep venous thrombosis in cancer patients. Journal of Vascular Surgery 47(2):388-94, 2008.

Smith KC, Siebel C, Pham L, Cho J, Singer RF, Chaloupka FJ, Griswold M, Wakefield M: News on tobacco and public attitudes toward smokefree air policies in the United States. Health Policy 86(1):42-52, 2008.

Selnes OA, Grega MA, Bailey MM, Pham L, Zeger S, Baumgartner WA, McKhann GM: Neurocognitive outcomes 3 years after coronary artery bypass graft surgery: a controlled study. Annals of Thoracic Surgery 84(6):1885-96, 2007.

Selnes OA, Pham L, Zeger S, McKhann GM: Defining cognitive change after CABG: decline versus normal variability. Annals of Thoracic Surgery 82(2):388-90, 2006.

Winkelstein ML, Quartey R, Pham L, Lewis-Boyer L, Lewis C, Hill K, Butz A: Asthma education for rural school nurses: resources, barriers, and outcomes. Journal of School Nursing 22(3):170-7, 2006.

Dominici F, Peng RD, Bell ML, Pham L, McDermott A, Zeger SL, Samet JM: Fine particulate air pollution and hospital admission for cardiovascular and respiratory diseases. Journal of the American Medical Association 295(10):1127-34, 2006.

Butz A, Pham L, Lewis L, Lewis C, Hill K, Walker J, Winkelstein M: Rural children with asthma: impact of a parent and child asthma education program. Journal of Asthma 42(10):813-21, 2005.

Charles Rohde (go to top of document)

Choi L, Caffo B, Rohde C: A survey of the likelihood approach to bioequivalence trials. Statistics in Medicine 27(24):4874-4894, 2008.

Theppeang K, Glass TA, Bandeen-Roche K, Todd AC, Rohde CA, Links JM, Schwartz BS: Associations of bone mineral density and lead levels in blood, tibia, and patella in urban-dwelling women. Environmental Health Perspectives 116(6):784-90, 2008.

Theppeang K, Glass TA, Bandeen-Roche K, Todd AC, Rohde CA, Schwartz BS: Gender and race/ethnicity differences in lead dose biomarkers. American Journal of Public Health 98(7):1248-55, 2008.

Dosreis S, Johnson E, Steinwachs D, Rohde C, Skinner EA, Fahey M, Lehman AF: Antipsychotic treatment patterns and hospitalizations among adults with schizophrenia. Schizophrenia Research 101(1-3):304-11, 2008.

Choi L, Caffo B, Rohde C, Ndovi TT, Hendrix CW: A mechanistic latent variable model for estimating drug concentrations in the male genital tract: A case study in drug kinetics. Statistics in Medicine 27(14):2697-2714, 2007.

Choi L, Caffo B, Rohde C: Optimal sampling times in bioequivalence studies using a simulated annealing algorithm. Statistics and Computing 17(4):337-347, 2007.

Caffo B, An MW, Rohde C: Flexible random intercept models for binary outcomes using mixtures of normals. Computational Statistics & Data Analysis 51(11):5220-5235, 2007.

Strug L, Rohde CA, Corey PN: An introduction to evidential sample size calculations. The American Statistician 61(3):207-212, 2007.

Caldera D, Burrell L, Rodriguez K, Crowne SS, Rohde C, Duggan A: Impact of a statewide home visiting program on parenting and on child health and development. Child Abuse & Neglect 31(8):829-52, 2007.

Duggan A, Caldera D, Rodriguez K, Burrell L, Rohde C, Crowne SS: Impact of a statewide home visiting program to prevent child abuse. Child Abuse & Neglect 31(8):801-27, 2007.

Ndovi TT, Parsons T, Choi L, Caffo B, Rohde C, Hendrix CW: A new method to estimate quantitatively seminal vesicle and prostate gland contributions to ejaculate. British Journal of Clinical Pharmacology 63(4):404-420, 2007.

Wong DF, Kuwabara H, Schretlen DJ, Bonson KR, Zhou Y, Nandi A, Brasic JR, Kimes AS, Maris MA, Kumar A, Contoreggi C, Links J, Ernst M, Rousset O, Zukin S, Grace AA, Rohde C, Jasinski DR, Gjedde A, London ED: Increased occupancy of dopamine receptors in human striatum during cue-elicited cocaine craving. Neuropsychopharmacology 31(12):2716-2727, 2006.

Guilarte TR, Chen MK, McGlothan JL, Verina T, Wong DF, Zhou Y, Alexander M, Rohde CA, Syversen T, Decamp E, Koser AJ, Fritz S, Gonczi H, Anderson DW, Schneider JS: Nigrostriatal dopamine system dysfunction and subtle motor deficits in manganese-exposed non-human primates. Experimental Neurology 202(2):381-90, 2006.

Ndovi TT, Choi L, Caffo B, Parsons T, Baker S, Zhao M, Rohde C, Hendrix CW: Quantitative assessment of seminal vesicle and prostate drug concentrations by use of a noninvasive method. Clinical Pharmacology and Therapeutics 80(2):146-58, 2006.

Forrest CB, Nutting PA, von Schrader S, Rohde C, Starfield B: Primary care physician specialty referral decision making: patient, physician, and health care system determinants. Medical Decision Making 26(1):76-85, 2006.

Redett R, Jari R, Crawford T, Chen YG, Rohde C, Brushart TM: Peripheral pathways regulate motoneuron collateral dynamics. Journal of Neuroscience 25(41):9406-12, 2005.

Brushart TM, Jari R, Verge V, Rohde C, Gordon T: Electrical stimulation restores the specificity of sensory axon regeneration. Experimental Neurology 194(1):221-9, 2005.

Witzel C, Rohde C, Brushart TM: Pathway sampling by regenerating peripheral axons. Journal of Comparative Neurology 485(3):183-190, 2005.

Nakashima S, Soong TR, Fox-Talbot K, Qian Z, Rahimi S, Wasowska BA, Rohde CA, Chen S, Garcia JG, Baldwin WM 3rd: Impact of MHC class II incompatibility on localization of mononuclear cell infiltrates to the bronchiolar compartment of orthotopic lung allografts. Journal of Transplantation 5(4):694-701, 2005.

Farfel MR, Orlova AO, Chaney RL, Lees PS, Rohde C, Ashley PJ: Biosolids compost amendment for reducing soil lead hazards: a pilot study of Orgro(R) amendment and grass seeding in urban yards. Science of the Total Environment 340(1-3):81-95, 2005.

Michael Rosenblum (go to top of document)

Rosenblum M, van der Laan MJ: Using regression models to analyze randomized trials: asymptotically valid hypothesis tests despite incorrectly specified models. Biometrics 65(3):937-45, 2009.

Rosenblum M, Deeks SG, van der Laan M, Bangsberg DR: The risk of virologic failure decreases with duration of HIV suppression, at greater than 50% adherence to antiretroviral therapy. PLoS One 4(9):e7196, 2009.

Rosenblum M, Jewell NP, van der Laan MJ, Shiboski S, van der Straten A, Padian N: Analyzing direct effects in randomized trials with secondary interventions: an application to HIV prevention trials. Journal of the Royal Statistical Society A 172(2):443-465, 2009.

Rosenblum M, van der Laan MJ: Confidence intervals for the population mean tailored to small sample sizes, with applications to survey sampling. International Journal of Biostatistics 5(1):Article 4, 2009.

Padian N, van der Straten A, Ramjee G, Chipato T, de Bruyn D, Blanchard K, Shiboski S, Montgomery E, Fancher H, Cheng H, Rosenblum M, van der Laan M, Jewell N, McIntyre J, The MIRA Team: Diaphragm and lubricant gel for prevention of HIV acquisition in southern African women: a randomised controlled trial. Lancet 370(9583):251-261, 2007.

Alan Ross (go to top of document)

Paine LL, Johnson TR, Lang JM, Gagnon D, Declercq ER, DeJoseph J, Scupholme A, Strobino D, Ross A: A comparison of visits and practices of nurse-midwives and obstetrician-gynecologists in ambulatory care settings. Journal of Midwifery and Women's Health 45(1):37-44, 2000.

Morabia A, Ross A, Curtin F, Pichard C, Slosman DO: Relation of BMI to a dual-energy X-ray absorptiometry measure of fatness. British Journal of Nutrition 82:49-55, 1999.

Paine LL, Lang JM, Strobino DM, Johnson TR, DeJoseph JF, Declercq ER, Gagnon DR, Scupholme A, Ross A: Characteristics of nurse-midwife patients and visits, 1991. American Journal of Public Health 89(6):906-909, 1999.

Hughart N, Strobino D, Holt E, Guyer B, Hou W, Huq A, Ross A:The relation of parent and provider characteristics to vaccination status of children in private practices and managed care organizations in Maryland. Medical Care 37(1):44-55, 1999.

Hughart N, Holt E, Rosenthal J, Ross A, et al: Effectiveness of pediatric practice consultation on missed opportunities for immunization. Journal of Urban Health 75(1):123-34, 1998.

Ross A, Kennedy AB, Holt E, Guyer B, Hou W, Hughart N: Initiating the first DTP vaccination age-appropriately: a model for understanding vaccination coverage. Pediatrics 101(6):970-4, 1998.

Bolton P, Holt E, Ross A, Hughart N, Guyer B: Estimating vaccination coverage using parental recall, vaccination cards, and medical records. Public Health 113(6):521-6, 1998.

Ingo Ruczinski (go to top of document)

Sleiman PM, Flory J, Imielinski M, Bradfield JP, Annaiah K, Willis-Owen SA, Wang K, Rafaels NM, Michel S, Bonnelykke K, Zhang H, Kim CE, Frackelton EC, Glessner JT, Hou C, Otieno FG, Santa E, Thomas K, Smith RM, Glaberson WR, Garris M, Chiavacci RM, Beaty TH, Ruczinski I, Orange JM, Allen J, Spergel JM, Grundmeier R, Mathias RA, Christie JD, von Mutius E, Cookson WO, Kabesch M, Moffatt MF, Grunstein MM, Barnes KC, Devoto M, Magnusson M, Li H, Grant SF, Bisgaard H, Hakonarson H: Variants of DENND1B associated with asthma in children. New England Journal of Medicine 362(1):36-44, 2010.

Scharpf RB, Ruczinski I: R classes and methods for SNP array data. Methods in Molecular Biology 593:67-79, 2010.

Wheless L, Ruczinski I, Alani RM, Clipp S, Hoffman-Bolton J, Jorgensen TJ, Liegeois NJ, Strickland PT, Alberg AJ: The association between skin characteristics and skin cancer prevention behaviors. Cancer Epidemiology, Biomarkers and Prevention 18(10):2613-9, 2009.

Miller CL, Murakami P, Ruczinski I, Ross RG, Sinkus M, Sullivan B, Leonard S: Two complex genotypes relevant to the kynurenine pathway and melanotropin function show association with schizophrenia and bipolar disorder. Schizophrenia Research 113(2-3):259-67, 2009.

Jorgensen TJ, Ruczinski I, Kessing B, Smith MW, Shugart YY, Alberg AJ: Hypothesis-driven candidate gene association studies: practical design and analytical considerations. American Journal of Epidemiology 170(8):986-93, 2009.

Gallicchio L, Chang HH, Christo DK, Thuita L, Huang HY, Strickland P, Ruczinski I, Clipp S, Helzlsouer KJ: Single nucleotide polymorphisms in obesity-related genes and all-cause and cause-specific mortality: a prospective cohort study. BMC Medical Genetics 10(1):103, 2009.

Price AL, Tandon A, Patterson N, Barnes KC, Rafaels N, Ruczinski I, Beaty TH, Mathias R, Reich D, Myers S: Sensitive detection of chromosomal segments of distinct ancestry in admixed populations. PLoS Genetics 5(6):e1000519, 2009.

Himes BE, Hunninghake GM, Baurley JW, Rafaels NM, Sleiman P, Strachan DP, Wilk JB, Willis-Owen SA, Klanderman B, Lasky-Su J, Lazarus R, Murphy AJ, Soto-Quiros ME, Avila L, Beaty T, Mathias RA, Ruczinski I, Barnes KC, Celedon JC, Cookson WO, Gauderman WJ, Gilliland FD, Hakonarson H, Lange C, Moffatt MF, O'Connor GT, Raby BA, Silverman EK, Weiss ST: Genome-wide association analysis identifies PDE4D as an asthma-susceptibility gene. American Journal of Human Genetics 84(5):581-93, 2009.

Lam TK, Ruczinski I, Helzlsouer K, Shugart YY, Li KE, Clipp S, Strickland PT, Alberg AJ: Copy number variants of GSTM1 and GSTT1 in relation to lung cancer risk in a prospective cohort study. Annals of Epidemiology 19(8):546-52, 2009.

Ruczinski I, Plaxco KW: Some recommendations for the practitioner to improve the precision of experimentally determined protein folding rates and phi values. Proteins 74(2):461-74, 2009.

Schulze KJ, Christian P, Ruczinski I, Ray AL, Nath A, Wu LS, Semba RD: Hepcidin and iron status among pregnant women in Bangladesh. Asia Pacific Journal of Clinical Nutrition 17(3):451-6, 2008.

Pattaro C, Ruczinski I, Fallin DM, Parmigiani G: Haplotype block partitioning as a tool for dimensionality reduction in SNP association studies. BMC Genomics 9(1):405, 2008.

Chen J, Ruczinski I, Jorgensen TJ, Yenokyan G, Yao Y, Alani R, Liegeois NJ, Hoffman SC, Hoffman-Bolton J, Strickland PT, Helzlsouer KJ, Alberg AJ: Nonmelanoma skin cancer and risk for subsequent malignancy. Journal of the National Cancer Institute 100(17):1215-22, 2008.

Sull JW, Liang KY, Hetmanski JB, Fallin MD, Ingersoll RG, Park J, Wu-Chou YH, Chen PK, Chong SS, Cheah F, Yeow V, Park BY, Jee SH, Jabs EW, Redett R, Jung E, Ruczinski I, Scott AF, Beaty TH: Differential parental transmission of markers in RUNX2 among cleft case-parent trios from four populations. Genetic Epidemiology 32(6):505-12, 2008.

Scharpf RB, Parmigiani G, Pevsner J, Ruczinski I: Hidden Markov models for the assessment of chromosomal alterations using high-throughput SNP arrays. Annals of Applied Statistics 2(2):687-713, 2008.

Gallicchio L, Chang H, Christo DK, Thuita L, Huang HY, Strickland P, Ruczinski I, Hoffman SC, Helzlsouer KJ: Single nucleotide polymorphisms in inflammation-related genes and mortality in a community-based cohort in Washington County, Maryland. American Journal of Epidemiology 167(7):807-13, 2008.

Ting JC, Roberson ED, Miller ND, Lysholm-Bernacchi A, Stephan DA, Capone GT, Ruczinski I, Thomas GH, Pevsner J: Visualization of uniparental inheritance, Mendelian inconsistencies, deletions, and parent of origin effects in single nucleotide polymorphism trio data with SNPtrio. Human Mutation 28(12):1225-35, 2007.

Jorgensen TJ, Visvanathan K, Ruczinski I, Thuita L, Hoffman S, Helzlsouer KJ: Breast cancer risk is not associated with polymorphic forms of xeroderma pigmentosum genes in a cohort of women from Washington County, Maryland. Breast Cancer Research and Treatment 101(1):65-71, 2007.

Visvanathan K, Crum RM, Strickland PT, You X, Ruczinski I, Berndt SI, Alberg AJ, Hoffman SC, Comstock GW, Bell DA, Helzlsouer KJ: Alcohol dehydrogenase genetic polymorphisms, low-to-moderate alcohol consumption, and risk of breast cancer. Alcoholism, Clinical and Experimental Research 31(3):467-76, 2007.

Scharpf RB, Ting JC, Pevsner J, Ruczinski I: SNPchip: R classes and methods for SNP array data. Bioinformatics 23(5):627-8, 2007.

Ruczinski I, Sosnick TR, Plaxco KW: Methods for the accurate estimation of confidence intervals on protein folding phi-values. Protein Science 15(10):2257-64, 2006.

Dai JY, Ruczinski I, LeBlanc M, Kooperberg C: Imputation methods to improve inference in SNP association studies. Genetic Epidemiology 30(8):690-702, 2006.

Brown EE, Fallin D, Ruczinski I, Hutchinson A, Staats B, Vitale F, Lauria C, Serraino D, Rezza G, Mbisa G, Whitby D, Messina A, Goedert JJ, Chanock SJ: Associations of classic Kaposi sarcoma with common variants in genes that modulate host immunity. Cancer Epidemiology, Biomarkers and Prevention 15(5):926-34, 2006.

De Los Rios MA, Muralidhara BK, Wildes D, Sosnick TR, Marqusee S, Wittung-Stafshede P, Plaxco KW, Ruczinski I: On the precision of experimentally determined protein folding rates and {phi}-values. Protein Science 15(3):553-63, 2006.

Ting JC, Ye Y, Thomas GH, Ruczinski I, Pevsner J: Analysis and visualization of chromosomal abnormalities in SNP data with SNPscan. BMC Bioinformatics 7(1):25, 2006.

Mao R, Wang X, Spitznagel EL Jr, Frelin LP, Ting JC, Ding H, Kim JW, Ruczinski I, Downey TJ, Pevsner J: Primary and secondary transcriptional effects in the developing human Down syndrome brain and heart. Genome Biology 6(13):R107, 2006.

Brewster AM, Jorgensen TJ, Ruczinski I, Huang HY, Hoffman S, Thuita L, Newschaffer C, Lunn RM, Bell D, Helzlsouer KJ: Polymorphisms of the DNA repair genes XPD (Lys751Gln) and XRCC1 (Arg399Gln and Arg194Trp): relationship to breast cancer risk and familial predisposition to breast cancer. Breast Cancer Research and Treatment 1-8, 2005.

McCarney ER, Werner JH, Bernstein SL, Ruczinski I, Makarov DE, Goodwin PM, Plaxco KW: Site-specific dimensions across a highly denatured protein; a single molecule study. Journal of Molecular Biology 352(3):672-82, 2005.

Maxwell KL, Wildes D, Zarrine-Afsar A, De Los Rios MA, Brown AG, Friel CT, Hedberg L, Horng JC, Bona D, Miller EJ, Vallee-Belisle A, Main ER, Bemporad F, Qiu L, Teilum K, Vu ND, Edwards AM, Ruczinski I, Poulsen FM, Kragelund BB, Michnick SW, Chiti F, Bai Y, Hagen SJ, Serrano L, Oliveberg M, Raleigh DP, Wittung-Stafshede P, Radford SE, Jackson SE, Sosnick TR, Marqusee S, Davidson AR, Plaxco KW: Protein folding: Defining a "standard" set of experimental conditions and a preliminary kinetic data set of two-state proteins. Protein Science 14(3):602-16, 2005.

Kooperberg C, Ruczinski I: Identifying interacting SNPs using Monte Carlo logic regression. Genetic Epidemiology 28(2):157-170, 2004.

Ruczinski I, Kooperberg C, LeBlanc M: Exploring interactions in high dimensional genomic data: an overview of Logic Regression, with applications. Journal of Multivariate Analysis 90(1): 178-195, 2004.

Kohn JE, Millett IS, Jacob J, Zagrovic B, Dillon TM, Cingel N, Dothager RS, Seifert S, Thiyagarajan P, Sosnick TR, Hasan MZ, Pande VS, Ruczinski I, Doniach S, Plaxco KW: Random-coil behavior and the dimensions of chemically unfolded proteins. Proceedings of the National Academy of Sciences 101(34):12491-6, 2004.

Daniel Scharfstein (go to top of document)

Wang W, Scharfstein D, Tan Z, MacKenzie EJ: Causal inference in outcome-dependent two-phase sampling designs. Journal of the Royal Statistical Society-B 71(5):947-969, 2009.

Rodger AJ, Fox Z, Lundgren JD, Kuller LH, Boesecke C, Gey D, Skoutelis A, Goetz MB, Phillips AN, INSIGHT Strategies for Management of Antiretroviral Therapy (SMART) Study Group (includes Scharfstein D): Activation and coagulation biomarkers are independent predictors of the development of opportunistic disease in patients with HIV infection. Journal of Infectious Diseases 200(6):973-83, 2009.

Leff B, Reider L, Frick KD, Scharfstein DO, Boyd CM, Frey K, Karm L, Boult C: Guided care and the cost of complex healthcare: a preliminary report. American Journal of Managed Care 15(8):555-9, 2009.

Joffe A, McNeely C, Colantuoni E, An MW, Wang W, Scharfstein D: Evaluation of school-based smoking-cessation interventions for self-described adolescent smokers. Pediatrics 124(2):e187-94, 2009.

Egleston BL, Scharfstein DO, MacKenzie E: On estimation of the survivor average causal effect in observational studies when important confounders are missing due to death. Biometrics 65(2):497-504, 2009.

Wolff JL, Rand-Giovannetti E, Palmer S, Wegener S, Reider L, Frey K, Scharfstein D, Boult C: Caregiving and chronic care: the guided care program for families and friends. Journals of Gerontology Series A 64(7):785-91, 2009.

Dodd-O JM, Hristopoulos M, Scharfstein D, Brower R, Hassoun P, King LS, Becker P, Liu M, Wang W, Hassoun HT, Rabb H: Interactive effects of mechanical ventilation and kidney health on lung function in an in vivo mouse model. American Journal of Physiology. Lung Cellular and Molecular Physiology 296(1):L3-L11, 2009.

Fox Z, Phillips A, Cohen C, Neuhaus J, Baxter J, Emery S, Hirschel B, Hullsiek KH, Stephan C, Lundgren J, SMART Study Group (includes Scharfstein D): Viral resuppression and detection of drug resistance following interruption of a suppressive non-nucleoside reverse transcriptase inhibitor-based regimen. AIDS 22(17):2279-89, 2008.

Shardell M, Scharfstein DO, Vlahov D, Galai N: Sensitivity analysis using elicited expert information for inference with coarsened data: illustration of censored discrete event times in the AIDS Link to Intravenous Experience (ALIVE) Study. American Journal of Epidemiology 168(12):1460-9, 2008.

Shardell M, Scharfstein DO, Vlahov D, Galai N: Inference for cumulative incidence functions with informatively coarsened discrete event-time data. Statistics in Medicine 27(28):5861-79, 2008.

Brotman RM, Klebanoff MA, Nansel TR, Andrews WW, Schwebke JR, Zhang J, Yu KF, Zenilman JM, Scharfstein DO: A longitudinal study of vaginal douching and bacterial vaginosis--a marginal structural modeling analysis. American Journal of Epidemiology 168(2):188-96, 2008.

Strategies for Management of Antiretroviral Therapy (SMART) Study Group (includes Scharfstein D), Emery S, Neuhaus JA, Phillips AN, Babiker A, Cohen CJ, Gatell JM, Girard PM, Grund B, Law M, Losso MH, Palfreeman A, Wood R: Major clinical outcomes in antiretroviral therapy (ART)-naive participants and in those not receiving ART at baseline in the SMART study. Journal of Infectious Diseases 197(8):1133-44, 2008.

Strategies for Management of Antiretroviral Therapy (SMART) Study Group (includes Scharfstein D), Lundgren JD, Babiker A, El-Sadr W, Emery S, Grund B, Neaton JD, Neuhaus J, Phillips AN: Inferior clinical outcome of the CD4+ cell count-guided antiretroviral treatment interruption strategy in the SMART study: role of CD4+ Cell counts and HIV RNA levels during follow-up. Journal of Infectious Diseases 197(8):1145-55, 2008.

Scharfstein DO, Ryea JL, Caffo B: Accounting for within-patient correlation in assessing relative sensitivity of an adjunctive diagnostic test: application to lung cancer. Statistics in Medicine 27(12):2110-26, 2008.

Brotman RM, Ghanem KG, Klebanoff MA, Taha TE, Scharfstein DO, Zenilman JM: The effect of vaginal douching cessation on bacterial vaginosis: a pilot study. American Journal of Obstetrics and Gynecology 198(6):628.e1-7, 2008.

Bozzette SA, Ake CF, Tam HK, Phippard A, Cohen D, Scharfstein DO, Louis TA: Long-term survival and serious cardiovascular events in HIV-infected patients treated with highly active antiretroviral therapy. Journal of Acquired Immune Deficiency Syndromes 47(3):338-41, 2008.

Boult C, Reider L, Frey K, Leff B, Boyd CM, Wolff JL, Wegener S, Marsteller J, Karm L, Scharfstein D: Early effects of "guided care" on the quality of health care for multimorbid older persons: a cluster-randomized controlled trial. Journals of Gerontology Series A 63(3):321-7, 2008.

Rivara FP, Mackenzie EJ, Jurkovich GJ, Nathens AB, Wang J, Scharfstein DO: Prevalence of pain in patients 1 year after major trauma. Archives of Surgery 143(3):282-7, 2008.

MacKenzie EJ, Rivara FP, Jurkovich GJ, Nathens AB, Egleston BL, Salkever DS, Frey KP, Scharfstein DO: The impact of trauma-center care on functional outcomes following major lower-limb trauma. Journal of Bone and Joint Surgery 90(1):101-9, 2008.

MacKenzie EJ, Rivara FP, Jurkovich GJ, Nathens AB, Frey KP, Egleston BL, Salkever DS, Weir S, Scharfstein DO: The national study on costs and outcomes of trauma. Journal of Trauma 63(6 Suppl):S54-67, 2007.

Li X, Caffo B, Scharfstein D: On the potential for illogic with logically defined outcomes. Biostatistics 8(4):800-4, 2007.

Egleston BL, Scharfstein DO, Freeman EE, West SK: Causal inference for non-mortality outcomes in the presence of death. Biostatistics 8(3):526-45, 2007.

Minkovitz CS, Strobino D, Mistry KB, Scharfstein DO, Grason H, Hou W, Ialongo N, Guyer B: Healthy Steps for Young Children: sustained results at 5.5 years. Pediatrics 120(3):e658-68, 2007.

Eaton WW, Kalaydjian A, Scharfstein DO, Mezuk B, Ding Y: Prevalence and incidence of depressive disorder: the Baltimore ECA follow-up, 1981-2004. Acta Psychiatrica Scandinavica 116(3):182-8, 2007.

Rotnitzky A, Farall A, Bergesio A, Scharfstein D: Analysis of failure time data under competing censoring mechanisms. Journal of the Royal Statistical Society-B 69(3):307-327, 2007.

Shardell M, Scharfstein DO, Bozzette SA: Survival curve estimation for informatively coarsened discrete event-time data. Statistics in Medicine 26(10):2184-2202 , 2006.

Scharfstein DO, Halloran ME, Chu H, Daniels MJ: On estimation of vaccine efficacy using validation samples with selection bias. Biostatistics 7(4):615-29, 2006.

Nathens AB, Rivara FP, MacKenzie EJ, Maier RV, Wang J, Egleston B, Scharfstein DO, Jurkovich GJ: The impact of an intensivist-model ICU on trauma-related mortality. Annals of Surgery 244(4):545-54, 2006.

Hogan JW, Scharfstein DO: Estimating causal effects from multiple cycle data in studies of in vitro fertilization. Statistical Methods in Medical Research 15(2):195-209, 2006.

MacKenzie EJ, Rivara FP, Jurkovich GJ, Nathens AB, Frey KP, Egleston BL, Salkever DS, Scharfstein DO: A national evaluation of the effect of trauma-center care on mortality. New England Journal of Medicine 354(4):366-78, 2006.

Needham DM, Dennison CR, Dowdy DW, Mendez-Tellez PA, Ciesla N, Desai SV, Sevransky J, Shanholtz C, Scharfstein D, Herridge MS, Pronovost PJ: Study protocol: The Improving Care of Acute Lung Injury Patients (ICAP) study. Critical Care 10(1):R9 , 2005.

Epstein JI, Sanderson H, Carter HB, Scharfstein DO: Utility of saturation biopsy to predict insignificant cancer at radical prostatectomy. Urology 66(2):356-60, 2005.

Minkovitz CS, Strobino D, Scharfstein D, Hou W, Miller T, Mistry KB, Swartz K: Maternal depressive symptoms and children's receipt of health care in the first 3 years of life. Pediatrics 115(2):306-14, 2005.

Cotter DJ, Stefanik K, Zhang Y, Thamer M, Scharfstein D, Kaufman: Hematocrit was not validated as a surrogate end point for survival among epoetin-treated hemodialysis patients. Journal of Clinical Epidemiology 57(10):1086-1095, 2004.

Lin H, Scharfstein DO, Rosenheck RA: Analysis of longitudinal data with irregular, outcome-dependent follow-up. Journal of the Royal Statistical Society-B 66(3):791-813, 2004.

McLearn KT, Strobino DM, Hughart N, Minkovitz CS, Scharfstein D, Marks E, Guyer B: Developmental services in primary care for low-income children: clinicians' perceptions of the healthy steps for young children program. Journal of Urban Health 81(2):206-21, 2004.

Scharfstein DO, Manski CF, Anthony JC: On the construction of bounds in prospective studies with missing ordinal outcomes: application to the good behavior game trial. Biometrics 60(1):154-164, 2004.

Elizabeth Stuart (go to top of document)

Jo B, Stuart EA: On the use of propensity scores in principal causal effect estimation. Statistics in Medicine 28(23):2857-75, 2009.

Werner RM, Konetzka RT, Stuart EA, Norton EC, Polsky D, Park J: Impact of public reporting on quality of postacute care. Health Services Research 44(4):1169-87, 2009.

Cooley-Strickland M, Quille TJ, Griffin RS, Stuart EA, Bradshaw CP, Furr-Holden D: Community violence and youth: affect, behavior, substance use, and academics. Clinical Child and Family Psychology Review 12(2):127-56, 2009.

Stuart EA, Azur M, Frangakis C, Leaf P: Multiple imputation with large data sets: a case study of the Children's Mental Health Initiative. American Journal of Epidemiology 169(9):1133-9, 2009.

Wang Y, Browne DC, Petras H, Stuart EA, Wagner FA, Lambert SF, Kellam SG, Ialongo NS: Depressed mood and the effect of two universal first grade preventive interventions on survival to the first tobacco cigarette smoked among urban youth. Drug and Alcohol Dependence 100(3):194-203, 2009.

Marcus SM, Siddique J, Have TR, Gibbons RD, Stuart E, Normand SL: Balancing treatment comparisons in longitudinal studies. Psychiatric Annals 38(12):805-811, 2008.

Stuart EA, Perry DF, Le HN, Ialongo NS: Estimating intervention effects of prevention programs: accounting for noncompliance. Prevention Science 9(4):288-98, 2008.

Stuart EA, Rubin DB: Matching with multiple control groups with adjustment for group differences. Journal of Educational and Behavioral Statistics 33(3):279-306, 2008.

Harder VS, Stuart EA, Anthony JC: Adolescent cannabis problems and young adult depression: male-female stratified propensity score analyses. American Journal of Epidemiology 168(6):592-601, 2008.

Miech R, Azur M, Dusablon T, Jowers K, Goldstein AB, Stuart EA, Walrath C, Leaf PJ: The potential to reduce mental health disparities through the comprehensive community mental health services for children and their families program. Journal of Behavioral Health Services and Research 35(3):253-64, 2008.

Crum RM, Green KM, Storr CL, Chan YF, Ialongo N, Stuart EA, Anthony JC: Depressed mood in childhood and subsequent alcohol use through adolescence and young adulthood. Archives of General Psychiatry 65(6):702-712, 2008.

Salkever DS, Johnston S, Karakus MC, Ialongo NS, Slade EP, Stuart EA: Enhancing the net benefits of disseminating efficacious prevention programs: a note on target efficiency with illustrative examples. Administration and Policy in Mental Health 35(4):261-9, 2008.

Stuart EA: Developing practical recommendations for the use of propensity scores: Discussion of 'A critical appraisal of propensity score matching in the medical literature between 1996 and 2003' by Peter Austin, Statistics in Medicine. Statistics in Medicine 27(12):2062-5, 2008.

Slade EP, Stuart EA, Salkever DS, Karakus M, Green KM, Ialongo N: Impacts of age of onset of substance use disorders on risk of adult incarceration among disadvantaged urban youth: A propensity score matching approach. Drug and Alcohol Dependence 95(1-2):1-13, 2008.

Stuart EA, Green KM: Using full matching to estimate causal effects in nonexperimental studies: Examining the relationship between adolescent marijuana use and adult outcomes. Developmental Psychology 44(2):395-406, 2008.

McConnell S, Stuart EA, Devaney B: The truncation-by-death problem: what to do in an experimental evaluation when the outcome is not always defined. Evaluation Review 32(2):157-86, 2008.

Cook SR, Stuart EA: Comment on Dominici et al: Does the effect of micronutrient supplementation on neonatal survival vary with respect to the percentiles of the birth weight distribution? Bayesian Analysis 2(1):31-36, 2007.

Ho DE, Imai K, King G, Stuart EA: Matching as nonparametric preprocessing for reducing model dependence in parametric causal inference. Political Analysis 15(3):199-236, 2007.

Stuart EA: Estimating causal effects using school-level data sets. Educational Researcher 36(4):187-198, 2007.

Rubin DB, Stuart EA: Affinely invariant matching methods with discriminant mixtures of proportional ellipsoidally symmetric distributions. Annals of Statistics 34(4):1814-1826, 2006.

Rubin DB, Stuart EA, Zanutto EL: A potential outcomes view of value-added assessment in education. Journal of Educational and Behavioral Statistics 29(1):103-116, 2004.

Carol Thompson (go to top of document)

Griffith K, Wenzel J, Shang J, Thompson C, Stewart K, Mock V: Impact of a walking intervention on cardiorespiratory fitness, self-reported physical function, and pain in patients undergoing treatment for solid tumors. Cancer 115(20):4874-84, 2009.

Barnett DJ, Balicer RD, Thompson CB, Storey JD, Omer SB, Semon NL, Bayer S, Cheek LV, Gateley KW, Lanza KM, Norbin JA, Slemp CC, Links JM: Assessment of local public health workers' willingness to respond to pandemic influenza through application of the extended parallel process model. PLoS One 4(7):e6365, 2009.

Weaver VM, Griswold M, Todd AC, Jaar BG, Ahn KD, Thompson CB, Lee BK: Longitudinal associations between lead dose and renal function in lead workers. Environmental Research 109(1):101-7, 2009.

Knaak JB, Dary CC, Power F, Thompson CB, Blancato JN: Physicochemical and biological data for the development of predictive organophosphorus pesticide QSARs and PBPK/PD models for human risk assessment. Critical Reviews in Toxicology 34(2):143-207, 2004.

Richard Thompson (go to top of document)

Morad AH, Winters BD, Yaster M, Stevens RD, White ED, Thompson RE, Weingart JD, Gottschalk A: Efficacy of intravenous patient-controlled analgesia after supratentorial intracranial surgery: a prospective randomized controlled trial. Journal of Neurosurgery 111(2):343-50, 2009.

Wang JS, Guo M, Montgomery EA, Thompson RE, Cosby H, Hicks L, Wang S, Herman JG, Canto MI: DNA promoter hypermethylation of p16 and APC predicts neoplastic progression in Barrett's esophagus. American Journal of Gastroenterology 104(9):2153-60, 2009.

Nolan MT, Hughes MT, Kub J, Terry PB, Astrow A, Thompson RE, Clawson L, Texeira K, Sulmasy DP: Development and validation of the Family Decision-Making Self-Efficacy Scale. Palliative and Supportive Care 7(3):315-21, 2009.

Hernandez RN, Feinberg RL, Vaurio R, Passanante NM, Thompson RE, Kaufmann WE: Autism spectrum disorder in fragile X syndrome: a longitudinal evaluation. American Journal of Medical Genetics Part A 149A(6):1125-37, 2009.

Stearns JD, Davila-Roman VG, Barzilai B, Thompson RE, Grogan KL, Thomas B, Hogue CW Jr: Prognostic value of troponin I levels for predicting adverse cardiovascular outcomes in postmenopausal women undergoing cardiac surgery. Anesthesia and Analgesia 108(3):719-26, 2009.

Healy ZR, Dinkova-Kostova AT, Wehage SL, Thompson RE, Fahey JW, Talalay P: Precise determination of the erythema response of human skin to ultraviolet radiation and quantification of effects of protectors. Photodermatology Photoimmunology and Photomedicine 25(1):45-50, 2009.

Butz AM, Crocetti M, Thompson RE, Lipkin PH: Promoting reading in children: do reading practices differ in children with developmental problems? Clinical Pediatrics 48(3):275-83, 2009.

Healy ZR, Dinkova-Kostova AT, Wehage SL, Thompson RE, Fahey JW, Talalay P: Precise determination of the erythema response of human skin to ultraviolet radiation and quantification of effects of protectors. Photodermatology, Photoimmunology, and Photomedicine 25(1):45-50, 2009.

Butz AM, Thompson RE, Tsoukleris MG, Donithan M, Hsu VD, Mudd K, Zuckerman IH, Bollinger ME: Seasonal patterns of controller and rescue medication dispensed in underserved children with asthma. Journal of Asthma 45(9):800-6, 2008.

Segev DL, Thompson RE, Locke JE, Simpkins CE, Thuluvath PJ, Montgomery RA, Maley WR: Prolonged waiting times for liver transplantation in obese patients. Annals of Surgery 248(5):863-70, 2008.

Giles JT, Bartlett SJ, Andersen R, Thompson R, Fontaine KR, Bathon JM: Association of body fat with C-reactive protein in rheumatoid arthritis. Arthritis and Rheumatism 58(9):2632-41, 2008.

Johnson KB, Serwint JR, Fagan LA, Thompson RE, Wilson ME, Roter D: Computer-based documentation: effects on parent-provider communication during pediatric health maintenance encounters. Pediatrics 122(3):590-8, 2008.

Nolan MT, Kub J, Hughes MT, Terry PB, Astrow AB, Carbo CA, Thompson RE, Clawson L, Texeira K, Sulmasy DP: Family health care decision making and self-efficacy with patients with ALS at the end of life. Palliative and Supportive Care 6(3):273-80, 2008.

Nazarian SM, Yenokyan G, Thompson RE, Griswold ME, Chang DC, Perler BA: Statistical modeling of the volume-outcome effect for carotid endarterectomy for 10 years of a statewide database. Journal of Vascular Surgery 48(2):343-50, 2008.

Hogue CW, Fucetola R, Hershey T, Freedland K, Davila-Roman VG, Goate AM, Thompson RE: Risk factors for neurocognitive dysfunction after cardiac surgery in postmenopausal women. Annals of Thoracic Surgery 86(2):511-6, 2008.

Thompson RE, Nelson DF, Popkin JH, Popkin Z: Case-control study of lung cancer risk from residential radon exposure in Worcester County, Massachusetts. Health Physics 94(3):228-241, 2008.

Segev DL, Simpkins CE, Thompson RE, Locke JE, Warren DS, Montgomery RA: Obesity impacts access to kidney transplantation. Journal of the American Society of Nephrology 19(2):349-55, 2008.

Sulmasy DP, Hughes MT, Thompson RE, Astrow AB, Terry PB, Kub J, Nolan MT: How would terminally ill patients have others make decisions for them in the event of decisional incapacity? A longitudinal study. Journal of the American Geriatrics Society 55(12):1981-8, 2007.

Benjo A, Thompson RE, Fine D, Hogue CW, Alejo D, Kaw A, Gerstenblith G, Shah A, Berkowitz DE, Nyhan D: Pulse pressure is an age-independent predictor of stroke development after cardiac surgery. Hypertension 50(4):630-5, 2007.

Larma JD, Silva AM, Holcroft CJ, Thompson RE, Donohue PK, Graham EM: Intrapartum electronic fetal heart rate monitoring and the identification of metabolic acidosis and hypoxic-ischemic encephalopathy. American Journal of Obstetrics and Gynecology 197(3):301.e1-8, 2007.

Garg A, Butz AM, Dworkin PH, Lewis RA, Thompson RE, Serwint JR: Improving the management of family psychosocial problems at low-income children's well-child care visits: the WE CARE Project. Pediatrics 120(3):547-58, 2007.

Hirsch GA, Ingkanisorn WP, Schulman SP, Gerstenblith G, Dyke CK, Rhoads KL, Thompson R, Aletras AH, Arai AE: Age-related vascular stiffness and left ventricular size after myocardial infarction. American Journal of Geriatric Cardiology 16(4):222-8, 2007.

Eidelwein AP, Thompson R, Fiorino K, Abadom V, Oliva-Hemker M: Disease presentation and clinical course in black and white children with inflammatory bowel disease. Journal of Pediatric Gastroenterology and Nutrition 44(5):555-60, 2007.

Gottschalk A, Berkow LC, Stevens RD, Mirski M, Thompson RE, White ED, Weingart JD, Long DM, Yaster M: Prospective evaluation of pain and analgesic use following major elective intracranial surgery. Journal of Neurosurgery 106(2):210-6, 2007.

Oliva-Hemker MM, Abadom V, Cuffari C, Thompson RE: Nonadherence with thiopurine immunomodulator and mesalamine medications in children with Crohn disease. Journal of Pediatric Gastroenterology and Nutrition 44(2):180-4, 2007.

Tierney E, Bukelis I, Thompson RE, Ahmed K, Aneja A, Kratz L, Kelley RI: Abnormalities of cholesterol metabolism in autism spectrum disorders. American Journal of Medical Genetics, Part B: Neuropsychiatric Genetics 141(6):666-8, 2006.

Butz AM, Tsoukleris MG, Donithan M, Hsu VD, Zuckerman I, Mudd KE, Thompson RE, Rand C, Bollinger ME: Effectiveness of nebulizer use-targeted asthma education on underserved children with asthma. Archives of Pediatric and Adolescent Medicine 160(6):622-8, 2006.

Carvalho RS, Abadom V, Dilworth HP, Thompson R, Oliva-Hemker M, Cuffari C: Indeterminate colitis: a significant subgroup of pediatric IBD. Inflammatory Bowel Diseases 12(4):258-262, 2006.

Nolan MT, Hughes M, Narendra DP, Sood JR, Terry PB, Astrow AB, Kub J, Thompson RE, Sulmasy DP: When patients lack capacity: the roles that patients with terminal diagnoses would choose for their physicians and loved ones in making medical decisions. Journal of Pain and Symptom Management 30(4):342-353, 2005.

Krauss GL, Abdallah A, Lesser R, Thompson RE, Niedermeyer E: Clinical and EEG features of patients with EEG wicket rhythms misdiagnosed with epilepsy. Neurology 64(11):1879-83, 2005.

Lipkin PH, Cozen MA, Thompson RE, Mostofsky SH: Stimulant dosage and age, race, and insurance type in a sample of children with attention-deficit/hyperactivity disorder. Journal of Child and Adolescent Psychopharmacology 15(2):240-8, 2005.

Pannu HK, Thompson RE, Phelps J, Magee CA, Fishman EK: Optimal contrast agents for vascular imaging on computed tomography iodixanol versus iohexol(1). Academic Radiology 12(5):576-84, 2005.

Butz AM, Donithan M, Bollinger ME, Rand C, Thompson RE: Monitoring nebulizer use in children: comparison of electronic and asthma diary data. Annals of Allergy, Asthma & Immunology 94(3):360-5, 2005.

Fortunato JE, Darbari A, Mitchell SE, Thompson RE, Cuffari C: The limitations of gastro-jejunal (G-J) feeding tubes in children: a 9-year pediatric hospital database analysis. American Journal of Gastroenterology 100(1):186-9, 2005.

Tekes A, Kamel I, Imam K, Szarf G, Schoenberg M, Nasir K, Thompson R, Bluemke D: Dynamic MRI of bladder cancer: evaluation of staging accuracy. American Journal of Roentgenology 184(1):121-7, 2005.

Kickler TS, Borowitz MJ, Thompson RE, Charintranont N, Law R: Ret-Y a measure of reticulocyte size: a sensitive indicator of iron deficiency anemia. Clinical and Laboratory Haematology 26(6):423-7, 2004.

Butz AM, Riekert KA, Eggleston P, Winkelstein M, Thompson RE, Rand C: Factors associated with preventive asthma care in inner-city children. Clinical Pediatrics 43(8):709-719, 2004.

Attard TM, Horton KM, Devito K, Darbari A, Oliva-Hemker M, Thompson R, Cuffari C: Pediatric jejunoileitis: a severe Crohn's disease phenotype that requires intensive nutritional management. Inflammatory Bowel Diseases 10(4):357-360, 2004.

Kraut MA, Gerring JP, Cooper KL, Thompson RE, Denckla MB, Kaufmann WE: Longitudinal evolution of unidentified bright objects in children with neurofibromatosis-1. American Journal of Medical Genetics 129A(2):113-119, 2004.

Darbari A, Sena L, Argani P, Oliva-Hemker JM, Thompson R, Cuffari C: Gadolinium-enhanced magnetic resonance imaging: a useful radiological tool in diagnosing pediatric IBD. Inflammatory Bowel Diseases 10(2):67-72, 2004.

Hutton HE, Lyketsos CG, Zenilman JM, Thompson RE, Erbelding EJ: Depression and HIV risk behaviors among patients in a sexually transmitted disease clinic. American Journal of Psychiatry 161(5):912-4, 2004.

Cuffari C, Dassopoulos T, Turnbough L, Thompson RE, Bayless TM: Thiopurine methyltransferase activity influences clinical response to azathioprine in inflammatory bowel disease. Clinical Gastroenterology and Hepatology 2(5):410-7, 2004.

Rahman JE, Helou EF, Gelzer-Bell R, Thompson RE, Kuo C, Rodriguez ER, Hare JM, Baughman KL, Kasper EK: Noninvasive diagnosis of biopsy-proven cardiac amyloidosis. Journal of the American College of Cardiology 43(3):410-5, 2004.

Vasa RA, Grados M, Slomine B, Herskovits EH, Thompson RE, Salorio C, Christensen J, Wursta C, Riddle MA, Gerring JP: Neuroimaging correlates of anxiety after pediatric traumatic brain injury. Biological Psychiatry 55(3): 208-16, 2004.

Lawler LP, Horton KM, Scatarige JC, Phelps J, Thompson RE, Choi L, Fishman EK: Coronary artery calcification scoring by prospectively triggered multidetector-row computed tomography: is it reproducible? Journal of Computer Assisted Tomography 28(1):40-5, 2004.

James Tonascia (go to top of document)

Shah AG, Lydecker A, Murray K, Tetri BN, Contos MJ, Sanyal AJ, Nash Clinical Research Network (includes Tonascia J): Comparison of noninvasive markers of fibrosis in patients with nonalcoholic fatty liver disease. Clinical Gastroenterology and Hepatology 7(10):1104-12, 2009.

Kim WJ, Silverman EK, Hoffman E, Criner GJ, Mosenifar Z, Sciurba FC, Make BJ, Carey V, Estepar RS, Diaz A, Reilly JJ, Martinez FJ, Washko GR, NETT Research Group (includes Tonascia J): CT metrics of airway disease and emphysema in severe COPD. Chest 136(2):396-404, 2009.

Benzo R, Farrell MH, Chang CC, Martinez FJ, Kaplan R, Reilly J, Criner G, Wise R, Make B, Luketich J, Fishman AP, Sciurba FC, NETT Research Group (includes Tonascia J): Integrating health status and survival data: the palliative effect of lung volume reduction surgery. American Journal of Respiratory and Critical Care Medicine 180(3):239-46, 2009.

Woodworth GF, Baird CJ, Garces-Ambrossi G, Tonascia J, Tamargo RJ: Inaccuracy of the administrative database: comparative analysis of two databases for the diagnosis and treatment of intracranial aneurysms. Neurosurgery 65(2):251-6, 2009.

David K, Kowdley KV, Unalp A, Kanwal F, Brunt EM, Schwimmer JB, NASH CRN Research Group (includes Tonascia J): Quality of life in adults with nonalcoholic fatty liver disease: baseline data from the nonalcoholic steatohepatitis clinical research network. Hepatology 49(6):1904-12, 2009.

Rivera-Spoljaric K, Chinchilli VM, Camera LJ, Zeiger RS, Paul IM, Phillips BR, Taussig LM, Strunk RC, Bacharier LB, Childhood Asthma Research and Education (CARE) Network (includes Tonascia J): Signs and symptoms that precede wheezing in children with a pattern of moderate-to-severe intermittent wheezing. Journal of Pediatrics 154(6):877-81, 2009.

Bacharier LB, Guilbert TW, Zeiger RS, Strunk RC, Morgan WJ, Lemanske RF Jr, Moss M, Szefler SJ, Krawiec M, Boehmer S, Mauger D, Taussig LM, Martinez FD, Childhood Asthma Research and Education Network of the National Heart, Lung, and Blood Institute (includes Tonascia J): Patient characteristics associated with improved outcomes with use of an inhaled corticosteroid in preschool children at risk for asthma. Journal of Allergy and Clinical Immunology 123(5):1077-82, 2009.

Strunk RC, Sternberg AL, Szefler SJ, Zeiger RS, Bender B, Tonascia J, Childhood Asthma Management Program (CAMP) Research Group: Long-term budesonide or nedocromil treatment, once discontinued, does not alter the course of mild to moderate asthma in children and adolescents. Journal of Pediatrics 154(5):682-7, 2009.

Vuppalanchi R, Unalp A, Van Natta ML, Cummings OW, Sandrasegaran KE, Hameed T, Tonascia J, Chalasani N: Effects of liver biopsy sample length and number of readings on sampling variability in nonalcoholic fatty liver disease. Clinical Gastroenterology and Hepatology 7(4):481-6, 2009.

Chalasani NP, Sanyal AJ, Kowdley KV, Robuck PR, Hoofnagle J, Kleiner DE, Unalp A, Tonascia J, NASH CRN Research Group: Pioglitazone versus vitamin E versus placebo for the treatment of non-diabetic patients with non-alcoholic steatohepatitis: PIVENS trial design. Contemporary Clinical Trials 30(1):88-96, 2009.

Patel AC, Van Natta ML, Tonascia J, Wise RA, Strunk RC: Effects of time, albuterol, and budesonide on the shape of the flow-volume loop in children with asthma. Journal of Allergy and Clinical Immunology 122(4):781-787, 2008.

Patton HM, Lavine JE, Van Natta ML, Schwimmer JB, Kleiner D, Molleston J, Nonalcoholic Steatohepatitis Clinical Research Network (includes Tonascia J): Clinical correlates of histopathology in pediatric nonalcoholic steatohepatitis. Gastroenterology 135(6):1961-1971.e2, 2008.

Sharma S, Litonjua AA, Tantisira KG, Fuhlbrigge AL, Szefler SJ, Strunk RC, Zeiger RS, Murphy AJ, Weiss ST, Childhood Asthma Management Program Research Group (includes Tonascia J): Clinical predictors and outcomes of consistent bronchodilator response in the childhood asthma management program. Journal of Allergy and Clinical Immunology 122(5):921-928.e4, 2008.

Drummond MB, Blackford AL, Benditt JO, Make BJ, Sciurba FC, McCormack MC, Martinez FJ, Fessler HE, Fishman AP, Wise RA, NETT Investigators (includes Tonascia J): Continuous oxygen use in nonhypoxemic emphysema patients identifies a high-risk subset of patients: retrospective analysis of the national emphysema treatment trial. Chest 134(3):497-506, 2008.

Snyder ML, Goss CH, Neradilek B, Polissar NL, Mosenifar Z, Wise RA, Fishman AP, Benditt JO, National Emphysema Treatment Trial Research Group (incluldes Tonascia J): Changes in arterial oxygenation and self-reported oxygen use after lung volume reduction surgery. American Journal of Respiratory and Critical Care Medicine 178(4):339-45, 2008.

Martinez FJ, Han MK, Andrei AC, Wise R, Murray S, Curtis JL, Sternberg A, Criner G, Gay SE, Reilly J, Make B, Ries AL, Sciurba F, Weinmann G, Mosenifar Z, DeCamp M, Fishman AP, Celli BR, National Emphysema Treatment Trial Research Group (includes Tonascia J): Longitudinal change in the BODE index predicts mortality in severe emphysema. American Journal of Respiratory and Critical Care Medicine 178(5):491-9, 2008.

Kelly HW, Van Natta ML, Covar RA, Tonascia J, Green RP, Strunk RC, CAMP Research Group: Effect of long-term corticosteroid use on bone mineral density in children: a prospective longitudinal assessment in the childhood Asthma Management Program (CAMP) study. Pediatrics 122(1):e53-61, 2008.

Tantisira KG, Colvin R, Tonascia J, Strunk RC, Weiss ST, Fuhlbrigge AL, Childhood Asthma Management Program Research Group: Airway responsiveness in mild to moderate childhood asthma: sex influences on the natural history. American Journal of Respiratory and Critical Care Medicine 178(4):325-31, 2008.

Brown CD, Benditt JO, Sciurba FC, Lee SM, Criner GJ, Mosenifar Z, Shade DM, Slivka WA, Wise RA, National Emphysema Treatment Trial Research Group (includes Tonascia J): Exercise testing in severe emphysema: association with quality of life and lung function. COPD 5(2):117-24, 2008.

Fan VS, Giardino ND, Blough DK, Kaplan RM, Ramsey SD, Nett Research Group (includes Tonascia J): Costs of pulmonary rehabilitation and predictors of adherence in the national emphysema treatment trial. COPD 5(2):105-16, 2008.

Neuschwander-Tetri BA, Unalp A, Creer MH, Nonalcoholic Steatohepatitis Clinical Research Network (includes Tonascia J): Influence of local reference populations on upper limits of normal for serum alanine aminotransferase levels. Archives of Internal Medicine 168(6):663-6, 2008.

Matanoski GM, Tonascia JA, Correa-Villasenor A, Yates KC, Fink N, Elliott E, Sanders B, Lantry D: Cancer risks and low-level radiation in U.S. shipyard workers. Journal of Radiation Research 49(1):83-91, 2008.

Infante JR, Matsubayashi H, Sato N, Tonascia J, Klein AP, Riall TA, Yeo C, Iacobuzio-Donahue C, Goggins M: Peritumoral fibroblast SPARC expression and patient outcome with resectable pancreatic adenocarcinoma. Journal of Clinical Oncology 25(3):319-25, 2007.

Strunk RC, Weiss ST, Yates KP, Tonascia J, Zeiger RS, Szefler SJ, for the CAMP Research Group: Mild to moderate asthma affects lung growth in children and adolescents. Journal of Allergy and Clinical Immunology 118(5):1040-7, 2006.

Naunheim KS, Wood DE, Mohsenifar Z, Sternberg AL, Criner GJ, DeCamp MM, Deschamps CC, Martinez FJ, Sciurba FC, Tonascia J, Fishman AP, National Emphysema Treatment Trial Research Group: Long-term follow-up of patients receiving lung-volume-reduction surgery versus medical therapy for severe emphysema by the National Emphysema Treatment Trial Research Group. Annals of Thoracic Surgery 82(2):431-43, 2006.

Tantisira KG, Fuhlbrigge AL, Tonascia J, Van Natta M, Zeiger RS, Strunk RC, Szefler SJ, Weiss ST; for the Childhood Asthma Management Program Research Group: Bronchodilation and bronchoconstriction: predictors of future lung function in childhood asthma. Journal of Allergy and Clinical Immunology 117(6):1264-71, 2006.

Limb SL, Brown KC, Wood RA, Wise RA, Eggleston PA, Tonascia J, Hamilton RG, Adkinson NF: Adult asthma severity in individuals with a history of childhood asthma. Journal of Allergy and Clinical Immunology 115(1):61-6, 2005.

Lee SM, Wise R, Sternberg AL, Tonascia J, Piantadosi S: Methodologic issues in terminating enrollment of a subgroup of patients in a multicenter randomized trial. Clinical Trials 1(3):326-338, 2004.

Hanania NA, Sockrider M, Castro M, Holbrook JT, Tonascia J, Wise R, Atmar RL: Immune response to influenza vaccination in children and adults with asthma: Effect of corticosteroid therapy. Journal of Allergy and Clinical Immunology 113(4):717-24, 2004.

Mei-Cheng Wang (go to top of document)

Sorock GS, Quigley PA, Rutledge MK, Taylor J, Luo X, Foulis P, Wang MC, Varadhan R, Bellantoni M, Baker SP: Central nervous system medication changes and falls in nursing home residents. Geriatric Nursing 30(5):334-40, 2009.

Lu D, Hoory T, Monie A, Wu A, Wang MC, Hung CF: Treatment with demethylating agent, 5-aza-2'-deoxycytidine enhances therapeutic HPV DNA vaccine potency. Vaccine 27(32):4363-9, 2009.

Mielke MM, Kozauer NA, Chan KC, George M, Toroney J, Zerrate M, Bandeen-Roche K, Wang MC, Vanzijl P, Pekar JJ, Mori S, Lyketsos CG, Albert M: Regionally-specific diffusion tensor imaging in mild cognitive impairment and Alzheimer's disease. NeuroImage 46(1):47-55, 2009.

Lin Z, Bazzaro M, Wang MC, Chan KC, Peng S, Roden RB: Combination of proteasome and HDAC inhibitors for uterine cervical cancer treatment. Clinical Cancer Research 15(2):570-7, 2009.

Tseng CW, Trimble C, Zeng Q, Monie A, Alvarez RD, Huh WK, Hoory T, Wang MC, Hung CF, Wu TC: Low-dose radiation enhances therapeutic HPV DNA vaccination in tumor-bearing hosts. Cancer Immunology, Immunotherapy 58(5):737-48, 2009.

Chuang CM, Hoory T, Monie A, Wu A, Wang MC, Hung CF: Enhancing therapeutic HPV DNA vaccine potency through depletion of CD4+CD25+ T regulatory cells. Vaccine 27(5):684-9, 2009.

Bazzaro M, Lin Z, Santillan A, Lee MK, Wang MC, Chan KC, Bristow RE, Mazitschek R, Bradner J, Roden RB: Ubiquitin proteasome system stress underlies synergistic killing of ovarian cancer cells by bortezomib and a novel HDAC6 inhibitor. Clinical Cancer Research 14(22):7340-7, 2008.

Tseng CW, Monie A, Trimble C, Alvarez RD, Huh WK, Buchsbaum DJ, Straughn JM Jr, Wang MC, Yagita H, Hung CF, Wu TC: Combination of treatment with death receptor 5-specific antibody with therapeutic HPV DNA vaccination generates enhanced therapeutic anti-tumor effects. Vaccine 26(34):4314-9, 2008.

Tseng CW, Monie A, Wu CY, Huang B, Wang MC, Hung CF, Wu TC: Treatment with proteasome inhibitor bortezomib enhances antigen-specific CD8+ T-cell-mediated antitumor immunity induced by DNA vaccination. Journal of Molecular Medicine 86(8):899-908, 2008.

Wissow LS, Gadomski A, Roter D, Larson S, Brown J, Zachary C, Bartlett E, Horn I, Luo X, Wang MC: Improving child and parent mental health in primary care: a cluster-randomized trial of communication skills training. Pediatrics 121(2):266-75, 2008.

Stovring H, Wang MC: A new approach of nonparametric estimation of incidence and lifetime risk based on birth rates and incident events. BMC Medical Research Methodology 7(1):53, 2007.

Gielen AC, McKenzie LB, McDonald EM, Shields WC, Wang MC, Cheng YJ, Weaver NL, Walker AR: Using a computer kiosk to promote child safety: results of a randomized, controlled trial in an urban pediatric emergency department. Pediatrics 120(2):330-9, 2007.

Huang CY, Wang MC, Zhang Y: Analysing panel count data with informative observation times. Biometrika 93(4):763-775, 2006.

McDonald EM, Solomon BS, Shields WC, Serwint JR, Wang MC, Gielen AC: Do urban parents' interests in safety topics match their children's injury risks? Health Promotion Practice 7(4):388-95, 2006.

Chiang CT, James LF, Wang MC: Random weighted bootstrap method for recurrent events with informative censoring. Lifetime Data Analysis 11(4):489-509, 2005.

Huang CY, Wang MC: Nonparametric estimation of the bivariate recurrence time distribution. Biometrics 61(2):392-402, 2005.

Lu SE, Wang MC: Marginal analysis for clustered failure time data. Lifetime Data Analysis 11(1):61-79, 2005.

Chiang CT, Wang MC, Huang CY: Kernel estimation of rate function for recurrent event data. Scandinavian Journal of Statistics 32(1):77-91, 2005.

Huang CY, Wang MC: Joint modeling and estimation for recurrent event processes and failure time data. Journal of the American Statistical Association 99(468):1153-1165, 2004.

Kim TW, Lee JH, Hung CF, Peng S, Roden R, Wang MC, Viscidi R, Tsai YC, He L, Chen PJ, Boyd DA, Wu TC: Generation and characterization of DNA vaccines targeting the nucleocapsid protein of Severe Acute Respiratory Syndrome coronavirus. Journal of Virology 78(9):4638-4645, 2004.

Chen YQ, Wang MC, Huang Y: Semiparametric regression analysis on longitudinal pattern of recurrent gap times. Biostatistics 5(2):277-90, 2004.

Chiang CT, Wang MC: Smoothing estimation of rate function for recurrent event data with informative censoring. Annals of the Institute of Statistical Mathematics 56:87-100, 2004.

Sarah Wheelan (go to top of document)

Wheelan SJ, Martinez Murillo F, Boeke JD: The incredible shrinking world of DNA microarrays. Molecular bioSystems 4(7):726-32, 2008.

An W, Han JS, Wheelan SJ, Davis ES, Coombes CE, Ye P, Triplett C, Boeke JD: Active retrotransposition by a synthetic L1 element in mice. Proceedings of the National Academy of Sciences 103(49):18662-7, 2006.

Wheelan SJ, Scheifele LZ, Martinez-Murillo F, Irizarry RA, Boeke JD: Eukaryotic transposable elements and genome evolution special feature: transposon insertion site profiling chip (TIP-chip). Proceedings of the National Academy of Sciences 103(47):17632-7, 2006.

Wheelan SJ, Martinez-Murillo F, Irizarry RA, Boeke JD: Stacking the deck: double-tiled DNA microarrays. Nature Methods 3(11):903-7, 2006.

Richardson SM, Wheelan SJ, Yarrington RM, Boeke JD: GeneDesign: rapid, automated design of multikilobase synthetic genes. Genome Research 16(4):550-6, 2006.

Wheelan SJ, Aizawa Y, Han JS, Boeke JD: Gene-breaking: a new paradigm for human retrotransposon-mediated gene evolution. Genome Research 15(8):1073-8, 2005.

Gayane Yenokyan (go to top of document)

Kharlip J, Salvatori R, Yenokyan G, Wand GS: Recurrence of hyperprolactinemia after withdrawal of long-term cabergoline therapy. Journal of Clinical Endocrinology and Metabolism 94(7):2428-36, 2009.

Rosenberg RE, Law JK, Yenokyan G, McGready J, Kaufmann WE, Law PA: Characteristics and concordance of autism spectrum disorders among 277 twin pairs. Archives of Pediatrics and Adolescent Medicine 163(10):907-14, 2009.

Chen J, Ruczinski I, Jorgensen TJ, Yenokyan G, Yao Y, Alani R, Liegeois NJ, Hoffman SC, Hoffman-Bolton J, Strickland PT, Helzlsouer KJ, Alberg AJ: Nonmelanoma skin cancer and risk for subsequent malignancy. Journal of the National Cancer Institute 100(17):1215-22, 2008.

Nazarian SM, Yenokyan G, Thompson RE, Griswold ME, Chang DC, Perler BA: Statistical modeling of the volume-outcome effect for carotid endarterectomy for 10 years of a statewide database. Journal of Vascular Surgery 48(2):343-50, 2008.

O'Hegarty M, Pederson LL, Yenokyan G, Nelson D, Wortley P: Young adults' perceptions of cigarette warning labels in the United States and Canada. Preventing Chronic Disease 4(2):A27, 2007.

Sahakyan A, Armenian HK, Breitscheidel L, Yenokyan G, Thompson M: Feeding practices of babies and the development of Atopic Dermatitis in children after 12 months of age in Armenia: is there a signal? European Journal of Epidemiology 21(9):723-725, 2006.

Scott Zeger (go to top of document)

Koenig MA, Grega MA, Bailey MM, Pham LD, Zeger SL, Baumgartner WA, McKhann GM: Statin use and neurologic morbidity after coronary artery bypass grafting: A cohort study. Neurology 73(24):2099-106, 2009.

Massie AB, Zeger SL, Montgomery RA, Segev DL: The effects of DonorNet 2007 on kidney distribution equity and efficiency. American Journal of Transplantation 9(7):1550-7, 2009.

McCarthy ML, Zeger SL, Ding R, Levin SR, Desmond JS, Lee J, Aronsky D: Crowding delays treatment and lengthens emergency department length of stay, even among high-acuity patients. Annals of Emergency Medicine 54(4):492-503, 2009.

Carey JL, Dunn WR, Dahm DL, Zeger SL, Spindler KP: A systematic review of anterior cruciate ligament reconstruction with autograft compared with allograft. Journal of Bone and Joint Surgery 91(9):2242-50, 2009.

Selnes OA, Grega MA, Bailey MM, Pham LD, Zeger SL, Baumgartner WA, McKhann GM: Do management strategies for coronary artery disease influence 6-year cognitive outcomes? Annals of Thoracic Surgery 88(2):445-454, 2009.

Peng RD, Bell ML, Geyh AS, McDermott A, Zeger SL, Samet JM, Dominici F: Emergency admissions for cardiovascular and respiratory diseases and the chemical composition of fine particle air pollution. Environmental Health Perspectives 117(6):957-63, 2009.

Welty LJ, Peng RD, Zeger SL, Dominici F: Bayesian distributed lag models: estimating effects of particulate matter air pollution on daily mortality. Biometrics 65(1):282-91, 2009.

Dariotis JK, Sonenstein FL, Gates GJ, Capps R, Astone NM, Pleck JH, Sifakis F, Zeger S: Changes in sexual risk behavior as young men transition to adulthood. Perspectives on Sexual and Reproductive Health 40(4):218-25, 2008.

McKhann GM, Selnes OA, Grega MA, Bailey MM, Pham LD, Baumgartner WA, Zeger SL: Subjective memory symptoms in surgical and nonsurgical coronary artery patients: 6-year follow-up. Annals of Thoracic Surgery 87(1):27-34, 2009.

Louis TA, Zeger SL: Effective communication of standard errors and confidence intervals. Biostatistics 10(1):1-2, 2009.

Zeger SL, Dominici F, McDermott A, Samet JM: Mortality in the Medicare population and chronic exposure to fine particulate air pollution in urban centers (2000-2005). Environmental Health Perspectives 116(12):1614-9, 2008.

Bell ML, Ebisu K, Peng RD, Walker J, Samet JM, Zeger SL, Dominici F: Seasonal and regional short-term effects of fine particles on hospital admissions in 202 US counties, 1999-2005. American Journal of Epidemiology 168(11):1301-10, 2008.

McDonald FS, Zeger SL, Kolars JC: Associations between United States Medical Licensing Examination (USMLE) and Internal Medicine In-Training Examination (IM-ITE) scores. Journal of General Internal Medicine 23(7):1016-9, 2008.

Selnes OA, Grega MA, Bailey MM, Pham LD, Zeger SL, Baumgartner WA, McKhann GM: Cognition 6 years after surgical or medical therapy for coronary artery disease. Annals of Neurology 63(5):581-90, 2008.

Peng RD, Chang HH, Bell ML, McDermott A, Zeger SL, Samet JM, Dominici F: Coarse particulate matter air pollution and hospital admissions for cardiovascular and respiratory diseases among Medicare patients. Journal of the American Medical Association 299(18):2172-9, 2008.

McDonald FS, Zeger SL, Kolars JC: Associations of conference attendance with internal medicine in-training examination scores. Mayo Clinic Proceedings 83(4):449-53, 2008.

McCarthy ML, Zeger SL, Ding R, Aronsky D, Hoot NR, Kelen GD: The challenge of predicting demand for emergency department services. Academic Emergency Medicine 15(4):337-46, 2008.

Lu Y, Symons JM, Geyh AS, Zeger SL: An approach to checking case-crossover analyses based on equivalence with time-series methods. Epidemiology 19(2):169-175, 2008.

Dominici F, Peng RD, Ebisu K, Zeger SL, Samet JM, Bell ML: Does the effect of PM(10) on mortality depend on PM nickel and vanadium content? a reanalysis of the NMMAPS data. Environmental Health Perspectives 115(12):1701-3, 2007.

Selnes OA, Grega MA, Bailey MM, Pham L, Zeger S, Baumgartner WA, McKhann GM: Neurocognitive outcomes 3 years after coronary artery bypass graft surgery: a controlled study. Annals of Thoracic Surgery 84(6):1885-96, 2007.

Dominici F, Peng RD, Zeger SL, White RH, Samet JM: Particulate air pollution and mortality in the United States: did the risks change from 1987 to 2000? American Journal of Epidemiology 166(8):880-8, 2007.

Lu Y, Zeger SL: On the equivalence of case-crossover and time series methods in environmental epidemiology. Biostatistics 8(2):337-44, 2007.

Bell ML, Dominici F, Ebisu K, Zeger SL, Samet JM: Spatial and temporal variation in PM(2.5) chemical composition in the United States for health effects studies. Environmental Health Perspectives 115(7):989-95, 2007.

Janes H, Dominici F, Zeger SL: Trends in air pollution and mortality: an approach to the assessment of unmeasured confounding. Epidemiology 18(4):416-23, 2007.

Janes H, Dominici F, Zeger S: Partitioning evidence of association between air pollution and mortality. Epidemiology 18(4):427-8, 2007.

Zeger SL: Editorial: Knowledge from information. Journal of the Royal Statistical Society-A 170(3):513-516, 2007.

McDonald FS, Zeger SL, Kolars JC: Factors associated with medical knowledge acquisition during internal medicine residency. Journal of General Internal Medicine 22(7):962-8, 2007.

Thomas DC, Jerrett M, Kuenzli N, Louis TA, Dominici F, Zeger S, Schwarz J, Burnett RT, Krewski D, Bates D: Bayesian model averaging in time-series studies of air pollution and mortality. Journal of Toxicology and Environmental Health A 70(3-4):311-5, 2007.

Meyer PM, Zeger SL, Harlow SD, Sowers M, Crawford S, Luborsky JL, Janssen I, McConnell DS, Randolph JF, Weiss G: Characterizing daily urinary hormone profiles for women at midlife using functional data analysis. American Journal of Epidemiology 165(8):936-45, 2007.

Dominici F, Zeger SL, Parmigiani G, Katz J, Christian P: Does the effect of micronutrient supplementation on neonatal survival vary with respect to the percentiles of the birth weight distribution? Bayesian Analysis 2(1):1-30, 2007.

Selnes OA, Zeger SL: Coronary artery bypass grafting baseline cognitive assessment: essential not optional. Annals of Thoracic Surgery 83(2):374-6, 2007.

Robinson JW, Zeger SL, Forrest CB: A hierarchical multivariate two-part model for profiling providers' effects on health care charges. Journal of the American Statistical Association 101(475):911-923, 2006.

Selnes OA, Pham L, Zeger S, McKhann GM: Defining cognitive change after CABG: decline versus normal variability. Annals of Thoracic Surgery 82(2):388-90, 2006.

Peng RD, Dominici F, Zeger SL: Reproducible epidemiologic research. American Journal of Epidemiology 163(9):783-9, 2006.

Bassett SS, Yousem DM, Cristinzio C, Kusevic I, Yassa MA, Caffo BS, Zeger SL: Familial risk for Alzheimer's disease alters fMRI activation patterns. Brain 129(Pt 5):1229-1239, 2006.

Katz J, Christian P, Dominici F, Zeger SL: Treatment effects of maternal micronutrient supplementation vary by percentiles of the birth weight distribution in rural Nepal. Journal of Nutrition 136(5):1389-94, 2006.

Bandeen-Roche K, Xue QL, Ferrucci L, Walston J, Guralnik JM, Chaves P, Zeger SL, Fried LP: Phenotype of frailty: characterization in the Women's Health and Aging Studies. Journals of Gerontology Series A 61(3):262-6, 2006.

Zeger SL, Irizarry R, Peng RD: On time series analysis of public health and biomedical data. Annual Review of Public Health 27:57-79, 2006.

Dominici F, Peng RD, Bell ML, Pham L, McDermott A, Zeger SL, Samet JM: Fine particulate air pollution and hospital admission for cardiovascular and respiratory diseases. Journal of the American Medical Association 295(10):1127-34, 2006.

Dominici F, Zeger SL, Parmigiani G, Katz J, Christian P: Estimating percentile-specific treatment effects in counterfactual models: a case-study of micronutrient supplementation, birth weight and infant mortality. Applied Statistics 55(2):261-280, 2006.

Laowattana S, Zeger SL, Lima JA, Goodman SN, Wittstein IS, Oppenheimer SM: Left insular stroke is associated with adverse cardiac outcome. Neurology 66(4):477-83, 2006.

Dominici F, Zeger SL: Smooth quantile ratio estimation with regression: estimating medical expenditures for smoking-attributable diseases. Biostatistics 6(4):505-519, 2005.

Miller MR, Pronovost P, Donithan M, Zeger S, Zhan C, Morlock L, Meyer GS: Relationship between performance measurement and accreditation: implications for quality of care and patient safety. American Journal of Medical Quality 20(5):239-52, 2005.

McKhann GM, Grega MA, Borowicz LM Jr, Bailey MM, Barry SJ, Zeger SL, Baumgartner WA, Selnes OA: Is there cognitive decline 1 year after CABG? Comparison with surgical and nonsurgical controls. Neurology 65(7):991-9, 2005.

Choi L, Dominici F, Zeger SL, Ouyang P: Estimating treatment efficacy over time: a logistic regression model for binary longitudinal outcomes. Statistics in Medicine 24(18):2789-2805, 2005.

Dominici F, Cope L, Naiman DQ, Zeger SL: Smooth quantile ratio estimation. Biometrika 92(3):543-557, 2005.

Dominici F, McDermott A, Daniels M, Zeger SL, Samet JM: Revised analyses of the National Morbidity, Mortality, and Air Pollution Study: mortality among residents of 90 cities. Journal of Toxicology and Environmental Health A 68(13):1071-92, 2005.

Welty LJ, Zeger SL: