SELECTED RECENT ARTICLES BY:

 

Jiawei Bai | Karen Bandeen-Roche | Joshua Betz | Brian Caffo | Nilanjan Chatterjee | Gwendolyn Clemens | Elizabeth Colantuoni (Johnson) | Ciprian Crainiceanu| Frank Curriero | Abhirup Datta | Marie Diener-West | Constantine Frangakis | Adrian Gherman | Andre Hackman | Kasper Hansen | Benjamin Harvey | Stephanie Hicks | Leah Jager | Hongkai Ji | Jeffrey Leek | Ximin Li | Martin Lindquist | Thomas Louis | Aidan McDermott |John McGready | John Muschelli | Akihiko Nishimura | Elizabeth Ogburn | Roger Peng | Charles Rohde | Michael Rosenblum | Ingo Ruczinski | Daniel Scharfstein | Elizabeth Stuart | Elizabeth Sugar | Margaret Taub| Carol Thompson | Richard Thompson | Jing Tian | Cristian Tomasetti | James Tonascia | Jiangxia Wang | Mei-Cheng Wang | Sarah Wheelan | Carrie Wright | Gayane Yenokyan | Scott Zeger | Yifan Zhang | Ni Zhao | Weiqiang (Ken) Zhou | Jiafeng (Jay) Zhu | Vadim Zipunnikov

 

Jiawei Bai (go to top of document)

 

Reider L, Bai J, Scharfstein DO, Zipunnikov V, for METRC OUTLET Study Investigators: Methods for step count data: determining "valid" days and quantifying fragmentation of walking bouts. Gait Posture 81:205-212, 2020.

Liang H, Yang L, Tao L, Shi L, Yang W, Bai J, Zheng D, Wang N, Ji J: Data mining-based model and risk prediction of colorectal cancer by using secondary health data: a systematic review. Chin J Cancer Res 32(2):242-251, 2020.

Benjamin-Neelon SE, Bai J, Ostbye T, Neelon B, Pate RR, Crainiceanu C: Physical activity and adiposity in a racially diverse cohort of US infants. Obesity 28(3):631-637, 2020.

Huang L, Bai J, Ivanescu A, Harris T, Maurer M, Green P, Zipunnikov V: Multilevel matrix-variate analysis and its application to accelerometry-measured physical activity in clinical populations. JASA 114(526):553-564, 2019.

Karas M, Bai J, Straczkiewicz M, Harezlak J, Glynn NW, Harris T, Zipunnikov V, Crainiceanu C, Urbanek JK: Accelerometry data in health research: challenges and opportunities. Stat Biosci 11(2):210-237, 2019.

Di J, Spira A, Bai J, Urbanek J, Leroux A, Wu M, Resnick S, Simonsick E, Ferrucci L, Schrack J, Zipunnikov V: Joint and individual representation of domains of physical activity, sleep, and circadian rhythmicity. Stat Biosci 11(2):371-402, 2019.

Smirnova E, Ivanescu A, Bai J, Crainiceanu CM: A practical guide to big data. Stat Probab Lett 136:25-29, 2018.

Bai J, Sun Y, Schrack JA, Crainiceanu CM, Wang MC: A two-stage model for wearable device data. Biometrics 74(2):744-752, 2018.

Zhou W, Sherwood B, Ji Z, Xue Y, Du F, Bai J, Ying M, Ji H: Genome-wide prediction of DNase I hypersensitivity using gene expression. Nat Commun 8(1):1038, 2017.

Bai J, Di C, Xiao L, Evenson KR, LaCroix AZ, Crainiceanu CM, Buchner DM: An activity index for raw accelerometry data and its comparison with other activity metrics. PLoS One 11(8):e0160644, 2016.

 

Karen Bandeen-Roche (go to top of document)

 

Hladek MD, Gill J, Bandeen-Roche K, Walston J, Allen J, Hinkle JL, Lorig K, Szanton SL: High coping self-efficacy associated with lower odds of pre-frailty/frailty in older adults with chronic disease. Aging Ment Health 24(12):1956-1962, 2020.

Ip EH, Chen SH, Bandeen-Roche K, Speiser JL, Cai L, Houston DK: Longitudinal partially ordered data analysis for preclinical sarcopenia. Stat Med 39(24):3313-3328, 2020.

Gross AL, Carlson MC, Chu NM, McAdams-DeMarco MA, Mungas D, Simonsick EM, Varadhan R, Xue QL, Walston J, Bandeen-Roche K: Derivation of a measure of physiological multisystem dysregulation: Results from WHAS and Health ABC. Mech Ageing Dev 188:111258, 2020.

Kuiper JR, Hirsch AG, Bandeen-Roche K, Sundaresan AS, Tan BK, Kern RC, Schleimer RP, Schwartz BS: A new approach to categorization of radiologic inflammation in chronic rhinosinusitis. PLoS One 15(6):e0235432

Van Domelen DR, Bandeen-Roche K: A note on proposed estimation procedures for claims-based frailty indexes. Am J Epidemiol 189(5):369-371, 2020.

Piggott DA, Bandeen-Roche K, Mehta SH, Brown TT, Yang H, Walston JD, Leng SX, Kirk GD: Frailty transitions, inflammation, and mortality among persons aging with HIV infection and injection drug use. AIDS 34(8):1217-1225, 2020.

Bandeen-Roche K, Gross AL, Varadhan R, Buta B, Carlson MC, Huisingh-Scheetz M, Mcadams-Demarco M, Piggott DA, Brown TT, Hasan RK, Kalyani RR, Seplaki CL, Walston JD, Xue QL: Principles and issues for physical frailty measurement and its clinical application. J Gerontol A Biol Sci Med Sci 75(6):1107-1112, 2020.

Damluji AA, Rodriguez G, Noel T, Davis L, Dahya V, Tehrani B, Epps K, Sherwood M, Sarin E, Walston J, Bandeen-Roche K, Resar JR, Brown TT, Gerstenblith G, O'Connor CM, Batchelor W: Sarcopenia and health-related quality of life in older adults after transcatheter aortic valve replacement. Am Heart J 224:171-181, 2020.

Hirsch AG, Nordberg C, Bandeen-Roche K, Tan BK, Schleimer RP, Kern RC, Sundaresan A, Pinto JM, Kennedy TL, Greene JS, Kuiper JR, Schwartz BS: Radiologic sinus inflammation and symptoms of chronic rhinosinusitis in a population-based sample. Allergy 75(4):911-920, 2020.

Lee MJ, Varadaraj V, Tian J, Bandeen-Roche K, Swenor BK: The association between frailty and uncorrected refractive error in older adults. Ophthalmic Epidemiol 27(3):219-225, 2020.

Guralnik J, Bandeen-Roche K, Bhasin SAR, Eremenco S, Landi F, Muscedere J, Perera S, Reginster JY, Woodhouse L, Vellas B: Clinically meaningful change for physical performance: perspectives of the ICFSR Task Force. J Frailty Aging 9(1):9-13, 2020.

Jock BWI, Bandeen Roche K, Caldas SV, Redmond L, Fleischhacker S, Gittelsohn J: Latent class analysis offers insight into the complex food environments of Native American communities: findings from the randomly selected OPREVENT2 trial baseline sample. Int J Environ Res Public Health 17(4): E1237, 2020.

Swenor BK, Lee MJ, Tian J, Varadaraj V, Bandeen-Roche K: Visual impairment and frailty: examining an understudied relationship. J Gerontol A Biol Sci Med Sci 75(3):596-602, 2020.

Deal JA, Power MC, Palta P, Alonso A, Schneider ALC, Perryman K, Bandeen-Roche K, Sharrett AR: Relationship of cigarette smoking and time of quitting with incident dementia and cognitive decline. J Am Geriatr Soc 68(2):337-345, 2020.

Xue QL, Tian J, Walston JD, Chaves PHM, Newman AB, Bandeen-Roche K: Discrepancy in frailty identification: move beyond predictive validity. J Gerontol A Biol Sci Med Sci 75(2):387-393, 2020.

Varadaraj V, Lee MJ, Tian J, Ramulu PY, Bandeen-Roche K, Swenor BK: Near vision impairment and frailty: evidence of an association. Am J Ophthalmol 208:234-241, 2019.

Varadhan R, Russ DW, Gabr RE, Huang J, Kalyani RR, Xue QL, Cappola AR, Bandeen-Roche K, Fried LP: Relationship of physical frailty to phosphocreatine recovery in muscle after mild exercise stress in the oldest-old women. J Frailty Aging 8(4):162-168, 2019.

Chu NM, Bandeen-Roche K, Tian J, Kasper JD, Gross AL, Carlson MC, , Xue QL: Hierarchical development of frailty and cognitive impairment: clues into etiological pathways. J Gerontol A Biol Sci Med Sci 74(11):1761-1770, 2019.

Damluji AA, Huang J, Bandeen-Roche K, Forman DE, Gerstenblith G, Moscucci M, Resar JR, Varadhan R, Walston JD, Segal JB: Frailty among older adults with acute myocardial infarction and outcomes from percutaneous coronary interventions. J Am Heart Assoc 8(17):e013686, 2019.

Walker KA, Sharrett AR, Wu A, Schneider ALC, Albert M, Lutsey PL, Bandeen-Roche K, Coresh J, Gross AL, Windham BG, Knopman DS, Power MC, Rawlings AM, Mosley TH, Gottesman RF: Association of midlife to late-life blood pressure patterns with incident dementia. JAMA 322(6):535-545, 2019.

Walston J, Bandeen-Roche K, Buta B, Bergman H, Gill TM, Morley JE, Fried LP, Robinson TN, Afilalo J, Newman AB, Lopez-Otin C, De Cabo R, Theou O, Studenski S, Cohen HJ, Ferrucci L: Moving frailty toward clinical practice: NIA Intramural Frailty Science Symposium summary. J Am Geriatr Soc 67(8):1559-1564, 2019.

Kuiper JR, Hirsch AG, Bandeen-Roche K, Sundaresan AS, Tan BK, Kern RC, Schleimer RP, Schwartz BS: Workplace indirect cost impacts of nasal and sinus symptoms and related conditions. J Occup Environ Med 61(8):e333-e339, 2019.

Clark DV, Banura P, Bandeen-Roche K, Liles WC, Kain KC, Scheld WM, Moss WJ, Jacob ST: Biomarkers of endothelial activation/dysfunction distinguish sub-groups of Ugandan patients with sepsis and differing mortality risks. JCI Insight 4(10):e127623, 2019.

Damluji AA, Bandeen-Roche K, Berkower C, Boyd CM, Al-Damluji MS, Cohen MG, Forman DE, Chaudhary R, Gerstenblith G, Walston JD, Resar JR, Moscucci M: Percutaneous coronary intervention in older patients with ST-segment elevation myocardial infarction and cardiogenic shock. J Am Coll Cardiol 73(15):1890-1900, 2019.

Kim J, Bandeen-Roche K: Parametric estimation of association in bivariate failure-time data subject to competing risks: sensitivity to underlying assumptions. Lifetime Data Anal 25(2):259-279, 2019.

Jackson H, Engelman M, Bandeen-Roche K: Robust respondents and lost limitations: the implications of nonrandom missingness for the estimation of health trajectories. J Aging Health 31(4):685-708, 2019.

Deal JA, Sharrett AR, Albert M, Bandeen-Roche K, Burgard S, Thomas SD, Gottesman RF, Knopman D, Mosley T, Klein B, Klein R: Retinal signs and risk of incident dementia in the Atherosclerosis Risk in Communities study. Alzheimers Dement 15(3):477-486, 2019.

Chu NM, Gross AL, Shaffer AA, Haugen CE, Norman SP, Xue QL, Sharrett AR, Carlson MC, Bandeen-Roche K, Segev DL, McAdams-DeMarco MA: Frailty and changes in cognitive function after kidney transplantation. J Am Soc Nephrol 30(2):336-345, 2019.

Varadhan R, Walston JD, Bandeen-Roche K: Can a link be found between physical resilience and frailty in older adults by studying dynamical systems? J Am Geriatr Soc 66(8):1455-1458, 2018.

Sundaresan AS, Hirsch AG, Young AJ, Pollak J, Tan BK, Schleimer RP, Kern RC, Kennedy TL, Greene JS, Stewart WF, Bandeen-Roche K, Schwartz BS: Longitudinal evaluation of chronic rhinosinusitis symptoms in a population-based sample. J Allergy Clin Immunol Pract 6(4):1327-1335, 2018.

Cole M, Bandeen-Roche K, Hirsch AG, Kuiper JR, Sundaresan AS, Tan BK, Schleimer RP, Kern RC, Schwartz BS: Longitudinal evaluation of clustering of chronic sinonasal and related symptoms using exploratory factor analysis. Allergy 73(8):1715-1723, 2018.

Kuiper JR, Hirsch AG, Bandeen-Roche K, Sundaresan AS, Tan BK, Schleimer RP, Kern RC, Stewart WF, Schwartz BS: Prevalence, severity, and risk factors for acute exacerbations of nasal and sinus symptoms by chronic rhinosinusitis status. Allergy 73(6):1244-1253, 2018.

Koehler K, Ellis JH, Casey JA, Manthos D, Bandeen-Roche K, Platt R, Schwartz BS: Exposure assessment using secondary data sources in unconventional natural gas development and health studies. Environ Sci Technol 52(10):6061-6069, 2018.

Deal JA, Sharrett AR, Rawlings AM, Gottesman RF, Bandeen-Roche K, Albert M, Knopman D, Selvin E, Wasserman BA, Klein B, Klein R: Retinal signs and 20-year cognitive decline in the Atherosclerosis Risk in Communities Study. Neurology 90(13):e1158-e1166, 2018.

Power MC, Rawlings A, Sharrett AR, Bandeen-Roche K, Coresh J, Ballantyne CM, Pokharel Y, Michos ED, Penman A, Alonso A, Knopman D, Mosley TH, Gottesman RF: Association of midlife lipids with 20-year cognitive change: a cohort study. Alzheimers Dement 14(2):167-177, 2018.

Akpan A, Roberts C, Bandeen-Roche K, Batty B, Bausewein C, Bell D, Bramley D, Bynum J, Cameron ID, Chen LK, Ekdahl A, Fertig A, Gentry T, Harkes M, Haslehurst D, Hope J, Hurtado DR, Lyndon H, Lynn J, Martin M, Isden R, Raso FM, Shaibu S, Shand J, Sherrington C, Sinha S, Turner G, De Vries N, Yi GJ, Young J, Banerjee J: Standard set of health outcome measures for older persons. BMC Geriatr 18(1):36, 2018.

Rasmussen SG, Casey JA, Bandeen-Roche K, Schwartz BS: Proximity to industrial food animal production and asthma exacerbations in Pennsylvania, 2005-2012. Int J Environ Res Public Health 14(4):E362, 2017.

Bandeen-Roche K, Espinoza SE: Getting underneath observed frailty transitions: meaningful change, prevention, and intervention. J Am Geriatr Soc 65(11):2455-2456, 2017.

McAdams-DeMarco MA, Ying H, Olorundare I, King EA, Haugen C, Buta B, Gross AL, Kalyani R, Desai NM, Dagher NN, Lonze BE, Montgomery RA, Bandeen-Roche K, Walston JD, Segev DL: Individual frailty components and mortality in kidney transplant recipients. Transplantation 101(9):2126-2132, 2017.

Chen Y, Ning J, Ning Y, Liang KY, Bandeen-Roche K: On pseudolikelihood inference for semiparametric models with boundary problems. Biometrika 104(1):165-179, 2017.

Michels WM, Jaar BG, Ephraim PL, Liu Y, Miskulin DC, Tangri N, Crews DC, Scialla JJ, Shafi T, Sozio SM, Bandeen-Roche K, Cook CJ, Meyer KB, Boulware LE, DEcIDE Network Patient Outcomes in End Stage Renal Disease Study Investigators: Intravenous iron administration strategies and anemia management in hemodialysis patients. Nephrol Dial Transplant 32(1):173-181, 2017.

Kucharska-Newton AM, Palta P, Burgard S, Griswold ME, Lund JL, Capistrant BD, Kritchevsky SB, Bandeen-Roche K, Windham BG: Operationalizing frailty in the Atherosclerosis Risk in Communities Study cohort. J Gerontol A Biol Sci Med Sci 72(3):382-388, 2017.

Buta B, Choudhury PP, Xue QL, Chaves P, Bandeen-Roche K, Shardell M, Semba RD, Walston J, Michos ED, Appel LJ, McAdams-DeMarco M, Gross A, Yasar S, Ferrucci L, Fried LP, Kalyani RR: The association of vitamin D deficiency and incident frailty in older women: the role of cardiometabolic diseases. J Am Geriatr Soc 65(3):619-624, 2017.

Rawlings AM, Sang Y, Sharrett AR, Coresh J, Griswold M, Kucharska-Newton AM, Palta P, Wruck LM, Gross AL, Deal JA, Power MC, Bandeen-Roche KJ: Multiple imputation of cognitive performance as a repeatedly measured outcome. Eur J Epidemiol 32(1):55-66, 2017.

Armstrong NM, Meoni LA, Carlson MC, Xue QL, Bandeen-Roche K, Gallo JJ, Gross AL: Cardiovascular risk factors and risk of incident depression throughout adulthood among men: The Johns Hopkins Precursors Study. J Affect Disord 214:60-66, 2017.

Shafi T, Sozio SM, Luly J, Bandeen-Roche KJ, St Peter WL, Ephraim PL, McDermott A, Herzog CA, Crews DC, Scialla JJ, Tangri N, Miskulin DC, Michels WM, Jaar BG, Zager PG, Meyer KB, Wu AW, Boulware LE, DEcIDE Network Patient Outcomes in End Stage Renal Disease Study Investigators: Antihypertensive medications and risk of death and hospitalizations in US hemodialysis patients: Evidence from a cohort study to inform hypertension treatment practices. Medicine 96(5):e5924, 2017.

Tustin AW, Hirsch AG, Rasmussen SG, Casey JA, Bandeen-Roche K, Schwartz BS: Associations between unconventional natural gas development and nasal and sinus, migraine headache, and fatigue symptoms in Pennsylvania. Environ Health Perspect 125(2):189-197, 2017.

Godino JG, Appel LJ, Gross AL, Schrack JA, Parrinello CM, Kalyani RR, Windham BG, Pankow JS, Kritchevsky SB, Bandeen-Roche K, Selvin E: Diabetes, hyperglycemia, and the burden of functional disability among older adults in a community-based study. J Diabetes 9(1):76-84, 2017.

DuGoff EH, Bandeen-Roche K, Anderson GF: Relationship between continuity of care and adverse outcomes varies by number of chronic conditions among older adults with diabetes. J Comorb 6(2):65-72, 2016.

Rawlings AM, Bandeen-Roche K, Gross AL, Gottesman RF, Coker LH, Penman AD, Sharrett AR, Mosley TH: Factor structure of the ARIC-NCS Neuropsychological Battery: An evaluation of invariance across vascular factors and demographic characteristics. Psychol Assess 28(12):1674-1683, 2016.

Schwartz BS, Glass TA, Pollak J, Hirsch AG, Bailey-Davis L, Moran TH, Bandeen-Roche K: Depression, its comorbidities and treatment, and childhood body mass index trajectories. Obesity 24(12):2585-2592, 2016.

Miloyan B, Bulley A, Bandeen-Roche K, Eaton WW, Goncalves-Bradley DC: Anxiety disorders and all-cause mortality: systematic review and meta-analysis. Soc Psychiatry Psychiatr Epidemiol 51(11):1467-1475, 2016.

Gross AL, Xue QL, Bandeen-Roche K, Fried LP, Varadhan R, McAdams-DeMarco MA, Walston J, Carlson MC: Declines and impairment in executive function predict onset of physical frailty. J Gerontol A Biol Sci Med Sci 71(12):1624-1630, 2016.

Nguyen TQ, Bandeen-Roche K, German D, Nguyen NT, Bass JK, Knowlton AR: Negative treatment by family as a predictor of depressive symptoms, life satisfaction, suicidality, and tobacco/alcohol use in Vietnamese sexual minority women. LGBT Health 3(5):357-65, 2016.

Melnikova T, Park D, Becker L, Lee D, Cho E, Sayyida N, Tian J, Bandeen-Roche K, Borchelt DR, Savonenko AV: Sex-related dimorphism in dentate gyrus atrophy and behavioral phenotypes in an inducible tTa:APPsi transgenic model of Alzheimer's disease. Neurobiol Dis 96:171-185, 2016.

Rasmussen SG, Ogburn EL, McCormack M, Casey JA, Bandeen-Roche K, Mercer DG, Schwartz BS: Association between unconventional natural gas development in the Marcellus shale and asthma exacerbations. JAMA Intern Med 176(9):1334-43, 2016.

Reinert KG, Campbell JC, Bandeen-Roche K, Lee JW, Szanton S: The role of religious involvement in the relationship between early trauma and health outcomes among adult survivors. J Child Adolesc Trauma 9(3):231-241, 2016.

Nguyen TQ, Poteat T, Bandeen-Roche K, German D, Nguyen YH, Vu LK, Nguyen NT, Knowlton AR: The Internalized Homophobia Scale for Vietnamese sexual minority women: conceptualization, factor structure, reliability, and associations with hypothesized correlates. Arch Sex Behav 45(6):1329-46, 2016.

Xue QL, Tian J, Fried LP, Kalyani RR, Varadhan R, Walston JD, Bandeen-Roche K: Physical frailty assessment in older women: can simplification be achieved without loss of syndrome measurement validity? Am J Epidemiol 183(11):1037-44, 2016.

Deal JA, Richey Sharrett A, Bandeen-Roche K, Kritchevsky SB, Pompeii LA, Gwen Windham B, Lin FR: Hearing impairment and physical function and falls in the Atherosclerosis Risk in Communities hearing pilot study. J Am Geriatr Soc 64(4):906-8, 2016.

Schwartz BS, Pollak J, Bailey-Davis L, Hirsch AG, Cosgrove SE, Nau C, Kress AM, Glass TA, Bandeen-Roche K: Antibiotic use and childhood body mass index trajectory. Int J Obes 40(4):615-21, 2016.

Nguyen TQ, Bandeen-Roche K, Bass JK, German D, Nguyen NTT, Knowlton AR: A tool for sexual minority mental health research: the Patient Health Questionnaire (PHQ-9) as a depressive symptom severity measure for sexual minority women in Viet Nam. J Gay Lesbian Ment Health 20(2):173-191, 2016.

Riis JL, Granger DA, Minkovitz CS, Bandeen-Roche K, DiPietro JA, Johnson SB: Maternal distress and child neuroendocrine and immune regulation. Soc Sci Med 151:206-214, 2016.

Pustavoitau A, Barodka V, Sharpless NE, Torrice C, Nyhan D, Berkowitz DE, Shah AS, Bandeen Roche KJ, Walston JD: Role of senescence marker p16INK4a measured in peripheral blood T-lymphocytes in predicting length of hospital stay after coronary artery bypass surgery in older adults. Exp Gerontol 74:29-36, 2016.

Buta BJ, Walston JD, Godino JG, Park M, Kalyani RR, Xue QL, Bandeen-Roche K, Varadhan R: Frailty assessment instruments: Systematic characterization of the uses and contexts of highly-cited instruments. Ageing Res Rev 26:53-61, 2015.

Bandeen-Roche K, Seplaki CL, Huang J, Buta B, Kalyani RR, Varadhan R, Xue QL, Walston JD, Kasper JD: Frailty in older adults: a nationally representative profile in the United States. J Gerontol A Biol Sci Med Sci 70(11):1427-34, 2015.

Gross AL, Power MC, Albert MS, Deal JA, Gottesman RF, Griswold M, Wruck LM, Mosley TH Jr, Coresh J, Sharrett AR, Bandeen-Roche K: Application of latent variable methods to the study of cognitive decline when tests change over time. Epidemiology 26(6):878-87, 2015.

Walston JD, Bandeen-Roche K: Frailty: a tale of two concepts. BMC Med 13:185, 2015.

Reinert KG, Campbell JC, Bandeen-Roche K, Sharps P, Lee J: Gender and race variations in the intersection of religious involvement, early trauma, and adult health. J Nurs Scholarsh 47(4):318-27, 2015.

Zheng LY, Umans JG, Yeh F, Francesconi KA, Goessler W, Silbergeld EK, Bandeen-Roche K, Guallar E, Howard BV, Weaver VM, Navas-Acien A: The association of urine arsenic with prevalent and incident chronic kidney disease: evidence from the strong heart study. Epidemiology 26(4):601-12, 2015.

Tangri N, Miskulin DC, Zhou J, Bandeen-Roche K, Michels WM, Ephraim PL, McDermott A, Crews DC, Scialla JJ, Sozio SM, Shafi T, Jaar BG, Meyer K, Ebony Boulware L, DEcIDE Network Patient Outcomes in End-Stage Renal Disease Study Investigators: Effect of intravenous iron use on hospitalizations in patients undergoing hemodialysis: a comparative effectiveness analysis from the DEcIDE-ESRD study. Nephrol Dial Transplant 30(4):667-75, 2015.

Riis JL, Granger DA, DiPietro JA, Bandeen-Roche K, Johnson SB: Salivary cytokines as a minimally-invasive measure of immune functioning in young children: Correlates of individual differences and sensitivity to laboratory stress. Dev Psychobiol 57(2):153-67, 2015.

Ashar FN, Moes A, Moore AZ, Grove ML, Chaves PH, Coresh J, Newman AB, Matteini AM, Bandeen-Roche K, Boerwinkle E, Walston JD, Arking DE: Association of mitochondrial DNA levels with frailty and all-cause mortality. J Mol Med 93(2):177-86, 2015.

Gribble MO, Bandeen-Roche K, Fox MA: Determinants of exposure to fragranced product chemical mixtures in a sample of twins. Int J Environ Res Public Health 12(2):1466-86, 2015.

Dobrosielski DA, Patil S, Schwartz AR, Bandeen-Roche K, Stewart KJ: Effects of exercise and weight loss in older adults with obstructive sleep apnea. Med Sci Sports Exerc 47(1):20-6, 2015.

Nau C, Schwartz BS, Bandeen-Roche K, Liu A, Pollak J, Hirsch A, Bailey-Davis L, Glass TA: Community socioeconomic deprivation and obesity trajectories in children using electronic health records. Obesity 23(1):207-12, 2015.

 

 

Joshua Betz (go to top of document)

 

Kim SJ, Reed N, Betz JF, Abraham A, Lee MJ, Sharrett AR, Lin FR, Deal JA: Association between microvascular retinal signs and age-related hearing loss in the Atherosclerosis Risk in Communities Neurocognitive Study (ARIC-NCS). JAMA Otolaryngol Head Neck Surg 146(2):152-159, 2020.

Shah M, Paradis S, Betz J, Beylis N, Bharadwaj R, Caceres T, Gotuzzo E, Joloba M, Mave V, Nakiyingi L, Nicol MP, Pradhan N, King B, Armstrong D, Knecht D, Maus CE, Cooper CK, Dorman SE, Manabe YC: Multicenter study of the accuracy of the BD MAX multidrug-resistant tuberculosis assay for detection of Mycobacterium tuberculosis complex and mutations associated with resistance to rifampin and isoniazid. Clin Infect Dis 71(5):1161-1167, 2020.

Kim AS, Betz JF, Goman AM, Poe DS, Reed NS, Ward BK, Nieman CL: Prevalence and population estimates of obstructive eustachian tube dysfunction in US adolescents. JAMA Otolaryngol Head Neck Surg 146(8):763-765, 2020.

Armstrong NM, Deal JA, Betz J, Kritchevsky S, Pratt S, Harris T, Barry LC, Simonsick EM, Lin FR: Associations of hearing loss and depressive symptoms with incident disability in older adults: Health, Aging, and Body Composition Study. J Gerontol A Biol Sci Med Sci 75(3):531-536, 2020.

DeLuca A, Betz J, Bollinger R, Ray S, Manabe Y: Users beware! Biological variation in complete blood counts over short time intervals. BMJ Evid Based Med 24(6):207-208, 2019.

Reed NS, Huddle MG, Betz J, Power MC, Pankow JS, Gottesman R, Richey Sharrett A, Mosley TH, Lin FR, Deal JA: Association of midlife hypertension with late-life hearing loss. Otolaryngol Head Neck Surg 161(6):996-1003, 2019.

Afify A, Betz JF, Riabinina O, Lahondere C, Potter CJ: Commonly used insect repellents hide human odors from anopheles mosquitoes. Curr Biol 29(21):3669-3680, 2019.

Osborne LM, Betz JF, Yenokyan G, Standeven LR, Payne JL: The role of allopregnanolone in pregnancy in predicting postpartum anxiety symptoms. Front Psychol 10:1033, 2019.

Applebaum J, Hoyer M, Betz J, Lin FR, Goman AM: Long-term subjective loneliness in adults after hearing loss treatment. Int J Audiol 58(8):464-467, 2019.

Hanley DF, Thompson RE, Rosenblum M, Yenokyan G, ..., Betz JF, Sugar EA, et al: Efficacy and safety of minimally invasive surgery with thrombolysis in intracerebral haemorrhage evacuation (MISTIE III): a randomised, controlled, open-label, blinded endpoint phase 3 trial. Lancet 393(10175):1021-1032, 2019.

Reed NS, Betz JF, Kucharska-Newton AM, Lin FR, Deal JA: Hearing loss and satisfaction with healthcare: an unexplored relationship. J Am Geriatr Soc 67(3):624-626, 2019.

Bailey CR, Arun A, Towsley M, Choi WK, Betz JF, MacKenzie S, Areda MA, Duvvuri M, Mitchell S, Weiss CR: MVP(TM) micro vascular plug systems for the treatment of pulmonary arteriovenous malformations. Cardiovasc Intervent Radiol 42(3):389-395, 2019.

Reed NS, Deal JA, Huddle MG, Betz JF, Bailey BE, McGlumphy EJ, Eghrari AO, Riazuddin SA, Lin FR, Gottsch JD: Pilot study of audiometric patterns in Fuchs corneal dystrophy. J Speech Lang Hear Res 61(10):2604-2608, 2018.

Akinboyo IC, Voskertchian A, Gorfu G, Betz JF, Ross TL, Carroll KC, Milstone AM: Epidemiology and risk factors for recurrent Staphylococcus aureus colonization following active surveillance and decolonization in the NICU. Infect Control Hosp Epidemiol 39(11):1334-1339, 2018.

Nieman CL, Marrone N, Mamo SK, Betz J, Choi JS, Contrera KJ, Thorpe RJ Jr, Gitlin LN, Tanner EK, Han HR, Szanton SL, Lin FR: The Baltimore HEARS pilot study: an affordable, accessible, community-delivered hearing care intervention. Gerontologist 57(6):1173-1186, 2017.

Li L, Blake C, Sung Y, Shpritz B, Chen D, Genther DJ, Betz J, Lin FR: The Studying Multiple Outcomes After Aural Rehabilitative Treatment study: study design and baseline results. Gerontol Geriatr Med 3:1-10, 2017.

Contrera KJ, Sung YK, Betz J, Li L, Lin FR: Change in loneliness after intervention with cochlear implants or hearing aids. Laryngoscope 127(8):1885-1889, 2017.

Reed NS, Betz J, Kendig N, Korczak M, Lin FR: Personal sound amplification products vs a conventional hearing aid for speech understanding in noise. JAMA 318(1):89-90, 2017.

Reed NS, Betz J, Lin FR, Mamo SK: Pilot electroacoustic analyses of a sample of direct-to-consumer amplification products. Otol Neurotol 38(6):804-808, 2017.

Hanley DF, Lane K, McBee N..., Diener-West M, Muschelli J, Betz JF, Thompson CB, Sugar EA, Yenokyan G, ..., Rosenblum M, Thompson RE, et al: Thrombolytic removal of intraventricular haemorrhage in treatment of severe stroke: results of the randomised, multicentre, multiregion, placebo-controlled CLEAR III trial. Lancet 389(10069):603-611, 2017.

Vespa P, Hanley D, Betz J, Hoffer A, Engh J, Carter R, Nakaji P, Ogilvy C, Jallo J, Selman W, Bistran-Hall A, Lane K, McBee N, Saver J, Thompson RE, Martin N, ICES Investigators: ICES (Intraoperative Stereotactic Computed Tomography-Guided Endoscopic Surgery) for brain hemorrhage: a multicenter randomized controlled trial. Stroke 47(11):2749-2755, 2016.

Mener DJ, Betz J, Yaffe K, Harris TB, Helzner EP, Satterfield S, Houston DK, Strotmeyer ES, Pratt SR, Simonsick EM, Lin FR, Health ABC Study: Apolipoprotein E allele and hearing thresholds in older adults. Am J Alzheimers Dis Other Demen 31(1):34-9, 2016.

Contrera KJ, Betz J, Li L, Blake CR, Sung YK, Choi JS, Lin FR: Quality of life after intervention with a cochlear implant or hearing aid. Laryngoscope 126(9):2110-2115, 2016.

Choi JS, Betz J, Li L, Blake CR, Sung YK, Contrera KJ, Lin FR: Association of using hearing aids or cochlear implants with changes in depressive symptoms in older adults. JAMA Otolaryngol Head Neck Surg 142(7):652-7, 2016.

Choi JS, Betz J, Deal J, Contrera KJ, Genther DJ, Chen DS, Gispen FE, Lin FR: A comparison of self-report and audiometric measures of hearing and their associations with functional outcomes in older adults. J Aging Health 28(5):890-910, 2016.

Kamil RJ, Betz J, Powers BB, Pratt S, Kritchevsky S, Ayonayon HN, Harris TB, Helzner E, Deal JA, Martin K, Peterson M, Satterfield S, Simonsick EM, Lin FR, Health ABC study: Association of hearing impairment with incident frailty and falls in older adults. J Aging Health 28(4):644-60, 2016.

Hansen BM, Morgan TC, Betz JF, Sundgren PC, Norrving B, Hanley DF, Lindgren A: Intraventricular extension of supratentorial intracerebral hemorrhage: The modified Graeb Scale improves outcome prediction in Lund Stroke Register. Neuroepidemiology 46(1):43-50, 2016.

West KP Jr, Cole RN, Shrestha S, Schulze KJ, Lee SE, Betz J, Nonyane BA, Wu LS, Yager JD, Groopman JD, Christian P: A plasma α-tocopherome can be identified from proteins associated with vitamin E status in school-aged children of Nepal. J Nutr 145(12):2646-56, 2015.

Genther DJ, Betz J, Pratt S, Martin KR, Harris TB, Satterfield S, Bauer DC, Newman AB, Simonsick EM, Lin FR, Health, Aging and Body Composition Study: Association between hearing impairment and risk of hospitalization in older adults. J Am Geriatr Soc 63(6):1146-52, 2015.

Harrison Bush AL, Lister JJ, Lin FR, Betz J, Edwards JD: Peripheral hearing and cognition: evidence from the Staying Keen in Later Life (SKILL) Study. Ear Hear 36(4):395-407, 2015.

Chen DS, Betz J, Yaffe K, Ayonayon HN, Kritchevsky S, Martin KR, Harris TB, Purchase-Helzner E, Satterfield S, Xue QL, Pratt S, Simonsick EM, Lin FR, Health ABC Study: Association of hearing impairment with declines in physical functioning and the risk of disability in older adults. J Gerontol A Biol Sci Med Sci 70(5):654-61, 2015.

Genther DJ, Betz J, Pratt S, Kritchevsky SB, Martin KR, Harris TB, Helzner E, Satterfield S, Xue QL, Yaffe K, Simonsick EM, Lin FR, Health ABC Study: Association of hearing impairment and mortality in older adults. J Gerontol A Biol Sci Med Sci 70(1):85-90, 2015.

 

 

Brian Caffo (go to top of document)

 

Jalilianhasanpour R, Chen H, Caffo B, Johnson P, Beheshtian E, Yousem DM: Are women disadvantaged in academic radiology? Acad Radiol 27(12):1760-1766, 2020.

Wu D, Chang L, Ernst TM, Caffo BS, Oishi K: Developmental score of the infant brain: characterizing diffusion MRI in term- and preterm-born infants. Brain Struct Funct 225(8):2431-2445, 2020.

Mejia AF, Nebel MB, Wang Y, Caffo BS, Guo Y: Template independent component analysis: targeted and reliable estimation of subject-level brain networks using big data population priors. JASA 115(531):1151-1177, 2020.

McAuliffe D, Zhao Y, Pillai AS, Ament K, Adamek J, Caffo BS, Mostofsky SH, Ewen JB: Learning of skilled movements via imitation in ASD. Autism Res 13(5):777-784, 2020.

Zhao Y, Lindquist MA, Caffo BS: Sparse principal component based high-dimensional mediation analysis. Comput Stat Data Anal 142: 106835, 2020.

de Aguiar V, Zhao Y, Faria A, Ficek B, Webster KT, Wendt H, Wang Z, Hillis AE, Onyike CU, Frangakis C, Caffo B, Tsapkini K: Brain volumes as predictors of tDCS effects in primary progressive aphasia. Brain Lang 200:104707, 2020.

de Aguiar V, Zhao Y, Ficek BN, Webster K, Rofes A, Wendt H, Frangakis C, Caffo B, Hillis AE, Rapp B, Tsapkini K: Cognitive and language performance predicts effects of spelling intervention and tDCS in Primary Progressive Aphasia. Cortex 124:66-84, 2019.

Liu CF, Padhy S, Ramachandran S, Wang VX, Efimov A, Bernal A, Shi L, Vaillant M, Ratnanather JT, Faria AV, Caffo B, Albert M, Miller MI, BIOCARD Research Team, Alzheimer's Disease Neuroimaging Initiative: Using deep Siamese neural networks for detection of brain asymmetries associated with Alzheimer's Disease and Mild Cognitive Impairment. Magn Reson Imaging 64:190-199, 2019.

Ye C, Albert M, Brown T, Bilgel M, Hsu J, Ma T, Caffo B, Miller MI, Mori S, Oishi K: Extended multimodal whole-brain anatomical covariance analysis: detection of disrupted correlation networks related to amyloid deposition. Heliyon 5(7):e02074, 2019.

Lindquist MA, Geuter S, Wager TD, Caffo BS: Modular preprocessing pipelines can reintroduce artifacts into fMRI data. Hum Brain Mapp 40(8):2358-2376, 2019.

Muschelli J, Gherman A, Fortin JP, Avants B, Whitcher B, Clayden JD, Caffo BS, Crainiceanu CM: Neuroconductor: an R platform for medical imaging analysis. Biostatistics 20(2):218-239, 2019.

Shappell H, Caffo BS, Pekar JJ, Lindquist MA: Improved state change estimation in dynamic functional connectivity using hidden semi-Markov models. Neuroimage 191:243-257, 2019.

Charkhchi P, Wang B, Caffo B, Yousem DM: Bias in neuroradiology peer review: Impact of a "ding" on "dinging" others. AJNR Am J Neuroradiol 40(1):19-24, 2019.

Ngufor C, Houten HV, Caffo BS, Shah ND, McCoy RG: Mixed effect machine learning: a framework for predicting longitudinal change in hemoglobin A1c. J Biomed Inform 89:56-67, 2019.

Ficek BN, Wang Z, Zhao Y, Webster KT, Desmond JE, Hillis AE, Frangakis C, Vasconcellos Faria A, Caffo B, Tsapkini K: The effect of tDCS on functional connectivity in primary progressive aphasia. Neuroimage Clin 19:703-715, 2018.

Chen OY, Crainiceanu C, Ogburn EL, Caffo BS, Wager TD, Lindquist MA: High-dimensional multivariate mediation with application to neuroimaging data. Biostatistics 19(2):121-136, 2018.

Sair HI, Hannawi Y, Li S, Kornbluth J, Demertzi A, Di Perri C, Chabanne R, Jean B, Benali H, Perlbarg V, Pekar J, Luyt CE, Galanaud D, Velly L, Puybasset L, Laureys S, Caffo B, Stevens RD, Neuroimaging for Coma Emergence and Recovery (NICER) Consortium: Early functional connectome integrity and 1-year recovery in comatose survivors of cardiac arrest. Radiology 287(1):247-255, 2018.

Mejia AF, Nebel MB, Barber AD, Choe AS, Pekar JJ, Caffo BS, Lindquist MA: Improved estimation of subject-level functional connectivity using full and partial correlation with empirical Bayes shrinkage. Neuroimage 172:478-491, 2018.

Webb-Vargas Y, Chen S, Fisher A, Mejia A, Xu Y, Crainiceanu C, Caffo B, Lindquist MA: Big data and neuroimaging. Stat Biosci 9(2):543-558, 2017.

Syed MF, Lindquist MA, Pillai JJ, Agarwal S, Gujar SK, Choe AS, Caffo B, Sair HI: Dynamic functional connectivity states between the dorsal and ventral sensorimotor networks revealed by dynamic conditional correlation analysis of resting-state functional magnetic resonance imaging. Brain Connect 7(10):635-642, 2017.

McCoy RG, Ngufor C, Van Houten HK, Caffo B, Shah ND: Trajectories of glycemic change in a national cohort of adults with previously controlled type 2 diabetes. Med Care 55(11):956-964, 2017.

Barber AD, Caffo BS, Pekar JJ, Mostofsky SH: Decoupling of reaction time-related default mode network activity with cognitive demand. Brain Imaging Behav 11(3):666-676, 2017.

Mejia AF, Nebel MB, Eloyan A, Caffo B, Lindquist MA: PCA leverage: outlier detection for high-dimensional functional magnetic resonance imaging data. Biostatistics 18(3):521-536, 2017.

Choe AS, Nebel MB, Barber AD, Cohen JR, Xu Y, Pekar JJ, Caffo B, Lindquist MA: Comparing test-retest reliability of dynamic functional connectivity methods. Neuroimage 158:155-175, 2017.

Zhang T, Yin Q, Caffo B, Sun Y, Boatman-Reich D: Bayesian inference of high-dimensional, cluster-structured ordinary differential equation models with applications to brain connectivity studies. Ann Appl Stat 11(2):868-897, 2017.

Yahyavi-Firouz-Abadi N, Pillai JJ, Lindquist MA, Calhoun VD, Agarwal S, Airan RD, Caffo B, Gujar SK, Sair HI: Presurgical brain mapping of the ventral somatomotor network in patients with brain tumors using testing-state fMRI. AJNR Am J Neuroradiol 38(5):1006-1012, 2017.

Jha AK, Mena E, Caffo B, Ashrafinia S, Rahmim A, Frey E, Subramaniam RM: Practical no-gold-standard evaluation framework for quantitative imaging methods: application to lesion segmentation in positron emission tomography. J Med Imag 4(1):011011, 2017.

Chen S, Huang L, Qiu H, Nebel MB, Mostofsky SH, Pekar JJ, Lindquist MA, Eloyan A, Caffo BS: Parallel group independent component analysis for massive fMRI data sets. PLoS One 12(3):e0173496, 2017.

Chen S, Liu K, Yang Y, Lee S, Lindquist M, Caffo BS, Vogelstein J: An M-estimator for reduced-rank system identification. Pattern Recogn Lett 86:76-81, 2017.

Coughlin JM, Wang Y, Minn I, Bienko N, Ambinder EB, Xu X, Peters ME, Dougherty JW, Vranesic M, Koo SM, Ahn HH, Lee M, Cottrell C, Sair HI, Sawa A, Munro CA, Nowinski CJ, Dannals RF, Lyketsos CG, Kassiou M, Smith G, Caffo B, Mori S, Guilarte TR, Pomper MG: Imaging of glial cell activation and white matter integrity in brains of active and recently retired National Football League players. JAMA Neurol 74(1):67-74, 2017.

Kang J, Caffo B, Liu H: Editorial: Recent advances and challenges on big data analysis in neuroimaging. Front Neurosci 10:505, 2016.

Yue C, Zipunnikov V, Bazin PL, Pham D, Reich D, Crainiceanu C, Caffo B: Parameterization of white matter manifold-like structures using principal surfaces. JASA 111(515):1050-1060, 2016.

Han F, Han X, Liu H, Caffo B: Sparse median graphs estimation in a high-dimensional semiparametric model. Ann Appl Stat 10(3):1397-1426, 2016.

Fisher A, Caffo B, Schwartz B, Zipunnikov V: Fast, exact bootstrap principal component analysis for p > 1 million. JASA 111(514):846-860, 2016.

Harrison DM, Li X, Liu H, Jones CK, Caffo B, Calabresi PA, van Zijl P: Lesion heterogeneity on high-field susceptibility MRI is associated with multiple sclerosis severity. AJNR Am J Neuroradiol 37(8):1447-53, 2016.

Kass RE, Caffo BS, Davidian M, Meng XL, Yu B, Reid N: Ten simple rules for effective statistical practice. PLoS Comput Biol 12(6):e1004961, 2016.

Airan RD, Vogelstein JT, Pillai JJ, Caffo B, Pekar JJ, Sair HI: Factors affecting characterization and localization of interindividual differences in functional connectivity using MRI. Hum Brain Mapp 37(5):1986-97, 2016.

Jha AK, Caffo B, Frey EC: A no-gold-standard technique for objective assessment of quantitative nuclear-medicine imaging methods. Phys Med Biol 61(7):2780-800, 2016.

Qiu H, Han F, Liu H, Caffo B: Joint estimation of multiple graphical models from high dimensional time series. JRSS-B 78(2):487-504, 2016.

Sair HI, Yahyavi-Firouz-Abadi N, Calhoun VD, Airan RD, Agarwal S, Intrapiromkul J, Choe AS, Gujar SK, Caffo B, Lindquist MA, Pillai JJ: Presurgical brain mapping of the language network in patients with brain tumors using resting-state fMRI: Comparison with task fMRI. Hum Brain Mapp 37(3):913-923, 2016.

Li S, Chen S, Yue C, Caffo B: A parcellation based nonparametric algorithm for independent component analysis with application to fMRI data. Front Neurosci 10:15, 2016.

Rock C, Thom KA, Harris AD, Li S, Morgan D, Milstone AM, Caffo B, Joshi M, Leekha S: A multicenter longitudinal study of hospital-onset bacteremia: time for a new quality outcome measure? Infect Control Hosp Epidemiol 37(2):143-8, 2016.

Leyva F, Fuchs EJ, Bakshi R, Carballo-Dieguez A, Ventuneac A, Yue C, Caffo B, Du Y, Torbenson M, Li L, Mullin G, Lee L, Rohan L, Anton PA, Hendrix CW: Simultaneous evaluation of safety, acceptability, pericoital kinetics, and ex vivo pharmacodynamics comparing four rectal microbicide vehicle candidates. AIDS Res Hum Retroviruses 31(11):1089-97, 2015.

Hiruy H, Fuchs EJ, Marzinke MA, Bakshi RP, Breakey JC, Aung WS, Manohar M, Yue C, Caffo BS, Du Y, Abebe KZ, Spiegel HM, Rohan LC, McGowan I, Hendrix CW: A phase 1 randomized, blinded comparison of the pharmacokinetics and colonic distribution of three candidate rectal microbicide formulations of tenofovir 1% gel with simulated unprotected sex (CHARM-02). AIDS Res Hum Retroviruses 31(11):1098-108, 2015.

Sharer E, Crocetti D, Muschelli J, Barber AD, Nebel MB, Caffo BS, Pekar JJ, Mostofsky SH: Neural correlates of visuomotor learning in autism. J Child Neurol 30(14):1877-86, 2015.

Choe AS, Jones CK, Joel SE, Muschelli J, Belegu V, Caffo BS, Lindquist MA, van Zijl PC, Pekar JJ: Reproducibility and temporal structure in weekly resting-state fMRI over a period of 3.5 years. PLoS One 10(10):e0140134, 2015.

Jha AK, Song N, Caffo B, Frey EC: Objective evaluation of reconstruction methods for quantitative SPECT imaging in the absence of ground truth. Proc SPIE Int Soc Opt Eng 9416:94161K, 2015.

Ng KL, Gibson EM, Hubbard R, Yang J, Caffo B, O'Brien RJ, Krakauer JW, Zeiler SR: Fluoxetine maintains a state of heightened responsiveness to motor training early after stroke in a mouse model. Stroke 46(10):2951-60, 2015.

Harrison DM, Roy S, Oh J, Izbudak I, Pham D, Courtney S, Caffo B, Jones CK, van Zijl P, Calabresi PA: Association of cortical lesion burden on 7-T magnetic resonance imaging with cognition and disability in multiple sclerosis. JAMA Neurol 72(9):1004-12, 2015.

Gaddis A, Rosch KS, Dirlikov B, Crocetti D, MacNeil L, Barber AD, Muschelli J, Caffo B, Pekar JJ, Mostofsky SH: Motor overflow in children with attention-deficit/hyperactivity disorder is associated with decreased extent of neural activation in the motor cortex. Psychiatry Res 233(3):488-95, 2015.

Yue C, Chen S, Sair HI, Airan R, Caffo BS: Estimating a graphical intra-class correlation coefficient (GICC) using multivariate probit-linear mixed models. Comput Stat Data Anal 89:126-133, 2015.

Zhang T, Wu J, Li F, Caffo B, Boatman-Reich D: A dynamic directional model for effective brain connectivity using electrocorticographic (ECoG) time series. JASA 110(509):93-106, 2015.

Yang J, Shmuelof L, Xiao L, Krakauer JW, Caffo B: On tests of activation map dimensionality for fMRI-based studies of learning. Front Neurosci 9:85, 2015.

Hannawi Y, Lindquist MA, Caffo BS, Sair HI, Stevens RD: Resting brain activity in disorders of consciousness: A systematic review and meta-analysis. Neurology 84(12):1272-1280, 2015.

Mejia AF, Nebel MB, Shou H, Crainiceanu CM, Pekar JJ, Mostofsky S, Caffo B, Lindquist MA: Improving reliability of subject-level resting-state fMRI parcellation with shrinkage estimators. Neuroimage 112:14-29, 2015.

Ament K, Mejia A, Buhlman R, Erklin S, Caffo B, Mostofsky S, Wodka E: Evidence for specificity of motor impairments in catching and balance in children with autism. J Autism Dev Disord 45(3):742-51, 2015.

Lee S, Caffo BS, Lakshmanan B, Pham DL: Evaluating model misspecification in independent component analysis. J Stat Comput Simul 85(6):1151-1164, 2015.

Coughlin JM, Wang Y, Munro CA, Ma S, Yue C, Chen S, Airan R, Kim PK, Adams AV, Garcia C, Higgs C, Sair HI, Sawa A, Smith G, Lyketsos CG, Caffo B, Kassiou M, Guilarte TR, Pomper MG: Neuroinflammation and brain atrophy in former NFL players: An in vivo multimodal imaging pilot study. Neurobiol Dis 74C:58-65, 2015.

 

 

 

Nilanjan Chatterjee (go to top of document)

 

Bolton KL, Ptashkin RN, Gao T, Braunstein L, Devlin SM, ..., Chatterjee N, et al: Cancer therapy shapes the fitness landscape of clonal hematopoiesis. Nat Genet 52(11):1219-1226, 2020.

Zhong J, Jermusyk A, Wu L, Hoskins JW, Collins I, ..., Chatterjee N, et al: A transcriptome-wide association study identifies novel candidate susceptibility genes for pancreatic cancer. J Natl Cancer Inst 112(10):1003-1012, 2020.

Meisner A, Kundu P, Zhang YD, Lan LV, Kim S, Ghandwani D, Pal Choudhury P, Berndt SI, Freedman ND, Garcia-Closas M, Chatterjee N: Combined utility of 25 disease and risk factor polygenic risk scores for stratifying risk of all-cause mortality. Am J Hum Genet 107(3):418-431, 2020.

Tang H, Jiang L, Stolzenberg-Solomon RZ, Arslan AA, ..., Chatterjee N, et al: Genome-wide gene-diabetes and gene-obesity interaction scan in 8,255 cases and 11,900 controls from PanScan and PanC4 consortia. Cancer Epidemiol Biomarkers Prev 29(9):1784-1791, 2020.

Yu Z, Coresh J, Qi G, Grams M, Boerwinkle E, Snieder H, Teumer A, Pattaro C, Kottgen A, Chatterjee N, Tin A: A bidirectional Mendelian randomization study supports causal effects of kidney function on blood pressure. Kidney Int 98(3):708-716, 2020.

McGrath BP, Kundu P, Daya N, Coresh J, Selvin E, McEvoy JW, Chatterjee N: Isolated diastolic hypertension in the UK Biobank: Comparison of ACC/AHA and ESC/NICE guideline definitions. Hypertension 76(3):699-706, 2020.

Zhang YD, Hurson AN, Zhang H, Choudhury PP, ..., Chatterjee N, et al: Assessment of polygenic architecture and risk prediction based on common variants across fourteen cancers. Nat Commun 11(1):3353, 2020.

Pal Choudhury P, Chaturvedi AK, Chatterjee N: Evaluating discrimination of a lung cancer risk prediction model using partial risk-score in a two-phase study. Cancer Epidemiol Biomarkers Prev 29(6):1196-1203, 2020.

Zhang H, Ahearn TU, Lecarpentier J, ..., Chatterjee N, et al: Genome-wide association study identifies 32 novel breast cancer susceptibility loci from overall and subtype-specific analyses. Nat Genet 52(6):572-581, 2020.

Pal Choudhury P, Wilcox AN, Brook MN, Zhang Y, Ahearn T, Orr N, Coulson P, Schoemaker MJ, Jones ME, Gail MH, Swerdlow AJ, Chatterjee N, Garcia-Closas M: Comparative validation of breast cancer risk prediction models and projections for future risk stratification. J Natl Cancer Inst 112(3):278-285, 2020.

Arvanitis M, Tampakakis E, Zhang Y, Wang W, Auton A, 23andMe Research Team, Dutta D, Glavaris S, Keramati A, Chatterjee N, Chi NC, Ren B, Post WS, Battle A: Genome-wide association and multi-omic analyses reveal ACTN2 as a gene linked to heart failure. Nat Commun 11(1):1122, 2020.

Wong JYY, Zhang H, Hsiung CA, ..., Chatterjee N, et al: Tuberculosis infection and lung adenocarcinoma: Mendelian randomization and pathway analysis of genome-wide association study data from never-smoking Asian women. Genomics 112(2):1223-1232, 2020.

Ray D, Chatterjee N: Effect of non-normality and low count variants on cross-phenotype association tests in GWAS. Eur J Hum Genet 28(3):300-312, 2020.

Moore A, Kane E, Wang Z, Panagiotou OA, ..., Chatterjee N, et al: Genetically determined height and risk of non-Hodgkin lymphoma. Front Oncol 9:1539, 2020.

Chien LH, Chen CH, Chen TY, ..., Katki HA, Chatterjee N, et al: Predicting lung cancer occurrence in never-smoking females in Asia: TNSF-SQ, a prediction model. Cancer Epidemiol Biomarkers Prev 29(2):452-459, 2020.

ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Consortium (includes Chatterjee N): Pan-cancer analysis of whole genomes. Nature 578(7793):82-93, 2020.

Pal Choudhury P, Maas P, Wilcox A, Wheeler W, Brook M, Check D, Garcia-Closas M, Chatterjee N: iCARE: An R package to build, validate and apply absolute risk models. PLoS One 15(2):e0228198, 2020.

Koutros S, Kogevinas M, ..., Chatterjee N, et al: Diesel exhaust and bladder cancer risk by pathologic stage and grade subtypes. Environ Int 135:105346, 2020.

Meisner A, Kundu P, Chatterjee N: Case-only analysis of gene-environment interactions using polygenic risk scores. Am J Epidemiol 188(11):2013-2020, 2019.

Kundu P, Tang R, Chatterjee N: Generalized meta-analysis for multiple regression models across studies with disparate covariate information. Biometrika 106(3):567-585, 2019.

Lee A, Mavaddat N, Wilcox AN, Cunningham AP, Carver T, Hartley S, Babb de Villiers C, Izquierdo A, Simard J, Schmidt MK, Walter FM, Chatterjee N, Garcia-Closas M, Tischkowitz M, Pharoah P, Easton DF, Antoniou AC: BOADICEA: a comprehensive breast cancer risk prediction model incorporating genetic and nongenetic risk factors. Genet Med 21(8):1708-1718, 2019.

Campbell PT, Ambrosone CB, Nishihara R, Aerts HJWL, Bondy M, Chatterjee N, et al: Proceedings of the fourth international molecular pathological epidemiology (MPE) meeting. Cancer Causes Control 30(8):799-811, 2019.

Heller R, Meir A, Chatterjee N: Postselection estimation and testing following aggregate association tests. JRSS-B 81(3): 547-573, 2019.

Vachon CM, Scott CG, Tamimi RM, Thompson DJ, ..., Chatterjee N, et al: Joint association of mammographic density adjusted for age and body mass index and polygenic risk score with breast cancer risk. Breast Cancer Res 21(1):68, 2019.

Qi G, Chatterjee N: Mendelian randomization analysis using mixture models for robust and efficient estimation of causal effects. Nat Commun 10(1):1941, 2019.

Garcia-Closas M, Chatterjee N: Assessment of breast cancer risk: which tools to use? Lancet Oncol 20(4):463-464, 2019.

Ratnapriya R, Sosina OA, Starostik MR, Kwicklis M, Kapphahn RJ, Fritsche LG, Walton A, Arvanitis M, Gieser L, Pietraszkiewicz A, Montezuma SR, Chew EY, Battle A, Abecasis GR, Ferrington DA, Chatterjee N, Swaroop A: Retinal transcriptome and eQTL analyses identify genes associated with age-related macular degeneration. Nat Genet 51(4):606-610, 2019.

Mavaddat N, Michailidou K, ..., Chatterjee N, et al: Polygenic risk scores for prediction of breast cancer and breast cancer subtypes. Am J Hum Genet 104(1):21-34, 2019.

Heller R, Chatterjee N, Krieger A, Shi J: Post-selection inference following aggregate level hypothesis testing in large-scale genomic data. JASA 113(524):1770-1783, 2018.

Zhu B, Mirabello L, Chatterjee N: A subregion-based burden test for simultaneous identification of susceptibility loci and subregions within. Genet Epidemiol 42(7):673-683, 2018.

McMaster ML, Berndt SI, Zhang J, ..., Chatterjee N, et al: Two high-risk susceptibility loci at 6p25.3 and 14q32.13 for Waldenstrom macroglobulinemia. Nat Commun 9(1):4182, 2018.

Qi G, Chatterjee N: Heritability informed power optimization (HIPO) leads to enhanced detection of genetic associations across multiple traits. PLoS Genet 14(10):e1007549, 2018.

Zhang Y, Qi G, Park JH, Chatterjee N: Estimation of complex effect-size distributions using summary-level statistics from genome-wide association studies across 32 complex traits. Nat Genet 50(9):1318-1326, 2018.

Ji Y, Hong X, Wang G, Chatterjee N, Riley AW, Lee LC, Surkan PJ, Bartell TR, Zuckerman B, Wang X: A prospective birth cohort study on early childhood lead levels and attention deficit hyperactivity disorder: new insight on sex differences. J Pediatr 199:124-131, 2018.

Abubakar M, Chang-Claude J, Ali HR, Chatterjee N, et al: Etiology of hormone receptor positive breast cancer differs by levels of histologic grade and proliferation. Int J Cancer 143(4):746-757, 2018.

Derkach A, Zhang H, Chatterjee N: Power Analysis for Genetic Association Test (PAGEANT) provides insights to challenges for rare variant association studies. Bioinformatics 34(9):1506-1513, 2018.

Rudolph A, Song M, Brook MN, ..., Chatterjee N, et al: Joint associations of a polygenic risk score and environmental risk factors for breast cancer in the Breast Cancer Association Consortium. Int J Epidemiol 47(2):526-536, 2018.

Zhang H, Chatterjee N, Rader D, Chen J: Adjustment of nonconfounding covariates in case-control genetic association studies. AOAS 12(1):200-221, 2018.

Zhang M, Lykke-Andersen S, ..., Chatterjee N, et al: Characterising cis-regulatory variation in the transcriptome of histologically normal and tumour-derived pancreatic tissues. Gut 67(3):521-533, 2018.

Song M, Wheeler W, Caporaso NE, Landi MT, Chatterjee N: Using imputed genotype data in the joint score tests for genetic association and gene-environment interactions in case-control studies. Genet Epidemiol 42(2):146-155, 2018.

Stalder O, Asher A, Liang L, Carroll RJ, Ma Y, Chatterjee N: Semiparametric analysis of complex polygenic gene-environment interactions in case-control studies. Biometrika 104(4):801-812, 2017.

Zhu B, Song N, Shen R, Arora A, Machiela MJ, Song L, Landi MT, Ghosh D, Chatterjee N, Baladandayuthapani V, Zhao H: Integrating clinical and multiple omics data for prognostic assessment across human cancers. Sci Rep 7(1):16954, 2017.

McAllister K, Mechanic LE, Amos C, Aschard H, Blair IA, Chatterjee N, et al: Current challenges and new opportunities for gene-environment interaction studies of complex diseases. Am J Epidemiol 186(7):753-761, 2017.

Gauderman WJ, Mukherjee B, Aschard H, Hsu L, Lewinger JP, Patel CJ, Witte JS, Amos C, Tai CG, Conti D, Torgerson DG, Lee S, Chatterjee N: Update on the state of the science for analytical methods for gene-environment interactions. Am J Epidemiol 186(7):762-770, 2017.

Ritz BR, Chatterjee N, Garcia-Closas M, Gauderman WJ, Pierce BL, Kraft P, Tanner CM, Mechanic LE, McAllister K: Lessons learned from past gene-environment interaction successes. Am J Epidemiol 186(7):778-786, 2017.

Patel CJ, Kerr J, Thomas DC, Mukherjee B, Ritz B, Chatterjee N, Jankowska M, Madan J, Karagas MR, McAllister KA, Mechanic LE, Fallin MD, Ladd-Acosta C, Blair IA, Teitelbaum SL, Amos CI: Opportunities and challenges for environmental exposure assessment in population-based studies. Cancer Epidemiol Biomarkers Prev 26(9):1370-1380, 2017.

Wang Z, Chatterjee N: Increasing mapping precision of genome-wide association studies: to genotype and impute, sequence, or both? Genome Biol 18(1):118, 2017.

Landi MT, Chatterjee N, et al: A genome-wide association study of lung cancer identifies a region of chromosome 5p15 associated with risk for adenocarcinoma. Am J Hum Genet 88(6):861, 2017.

Fang J, Jia J, Makowski M, ..., Chatterjee N, et al: Functional characterization of a multi-cancer risk locus on chr5p15.33 reveals regulation of TERT by ZNF148. Nat Commun 8:15034, 2017.

Seow WJ, Matsuo K, Hsiung CA, ..., Chatterjee N, et al: Association between GWAS-identified lung adenocarcinoma susceptibility loci and EGFR mutations in never-smoking Asian women, and comparison with findings from Western populations. Hum Mol Genet 26(2):454-465, 2017.

Mhatre S, Wang Z, Nagrani R, Badwe R, Chiplunkar S, Mittal B, Yadav S, Zhang H, Chung CC, Patil P, Chanock S, Dikshit R, Chatterjee N, Rajaraman P: Common genetic variation and risk of gallbladder cancer in India: a case-control genome-wide association study. Lancet Oncol 18(4):535-544, 2017.

Grill S, Ankerst DP, Gail MH, Chatterjee N, Pfeiffer RM: Comparison of approaches for incorporating new information into existing risk prediction models. Stat Med 36(7):1134-1156, 2017.

Nagrani R, Mhatre S, Rajaraman P, Chatterjee N, Akbari MR, Boffetta P, Brennan P, Badwe R, Gupta S, Dikshit R: Association of Genome-Wide Association Study (GWAS) identified SNPs and risk of breast cancer in an Indian population. Sci Rep 7:40963, 2017.

Bodelon C, Oh H, Chatterjee N, Garcia-Closas M, et al: Association between breast cancer genetic susceptibility variants and terminal duct lobular unit involution of the breast. Int J Cancer 140(4):825-832, 2017.

Zuber V, Marconett CN, Shi J, ..., Chatterjee N, et al: Pleiotropic analysis of lung cancer and blood triglycerides. J Natl Cancer Inst 108(12): djw167, 2016.

Shi J, Park JH, Duan J, ..., Chatterjee N: Winner's curse correction and variable thresholding improve performance of polygenic risk modeling based on genome-wide association study summary-level data. PLoS Genet 12(12):e1006493, 2016.

Maas P, Barrdahl M, Joshi AD, ..., Chatterjee N: Breast cancer risk from modifiable and nonmodifiable risk factors among white women in the United States. JAMA Oncol 2(10):1295-1302, 2016.

Karami S, Han Y, Pande M, ..., Chatterjee N, et al: Telomere structure and maintenance gene variants and risk of five cancer types. Int J Cancer 139(12):2655-2670, 2016.

Zhu B, Mukherjee A, Machiela MJ, Song L, Hua X, Shi J, Garcia-Closas M, Chanock SJ, Chatterjee N: An investigation of the association of genetic susceptibility risk with somatic mutation burden in breast cancer. Br J Cancer 115(6):752-60, 2016.

Fehringer G, Kraft P, Pharoah PD, Eeles RA, Chatterjee N, et al: Cross-cancer genome-wide analysis of lung, ovary, breast, prostate, and colorectal cancer reveals novel pleiotropic associations. Cancer Res 76(17):5103-14, 2016.

Oh H, Bodelon C, Palakal M, Chatterjee N, Sherman ME, Linville L, Geller BM, Vacek PM, Weaver DL, Chicoine RE, Papathomas D, Patel DA, Xiang J, Clare SE, Visscher DW, Mies C, Hewitt SM, Brinton LA, Storniolo AM, He C, Garcia-Closas M, Chanock SJ, Gierach GL, Figueroa JD: Ages at menarche- and menopause-related genetic variants in relation to terminal duct lobular unit involution in normal breast tissue. Breast Cancer Res Treat 158(2):341-50, 2016.

Zhang H, Wheeler W, Hyland PL, Yang Y, Shi J, Chatterjee N, Yu K: A powerful procedure for pathway-based meta-analysis using summary statistics identifies 43 pathways associated with type II diabetes in European populations. PLoS Genet 12(6):e1006122, 2016.

Chatterjee N, Chen YH, Maas P, Carroll RJ: Constrained maximum likelihood estimation for model calibration using summary-level information from external big data sources. JASA 111(513):107-117, 2016.

Machiela MJ, Zhou W, ..., Chatterjee N, et al: Female chromosome X mosaicism is age-related and preferentially affects the inactivated X chromosome. Nat Commun 7:11843, 2016.

Chatterjee N, Shi J, Garcia-Closas M: Developing and evaluating polygenic risk prediction models for stratified disease prevention. Nat Rev Genet 17(7):392-406, 2016.

Figueroa JD, Middlebrooks CD, Banday AR, Ye Y, Garcia-Closas M, Chatterjee N, et al: Identification of a novel susceptibility locus at 13q34 and refinement of the 20p12.2 region as a multi-signal locus associated with bladder cancer risk in individuals of European ancestry. Hum Mol Genet 25(6):1203-14, 2016.

Berndt SI, Camp NJ, Skibola CF, ..., Chatterjee N, et al: Meta-analysis of genome-wide association studies discovers multiple loci for chronic lymphocytic leukemia. Nat Commun 7:10933, 2016.

Hua X, Hyland PL, Huang J, Song L, Zhu B, Caporaso NE, Landi MT, Chatterjee N, Shi J: MEGSA: A powerful and flexible framework for analyzing mutual exclusivity of tumor mutations. Am J Hum Genet 98(3):442-55, 2016.

Wang Z, Seow WJ, Shiraishi K, ..., Chatterjee N, et al: Meta-analysis of genome-wide association studies identifies multiple lung cancer susceptibility loci in never-smoking Asian women. Hum Mol Genet 25(3):620-9, 2016.

Boonstra PS, Mukherjee B, Gruber SB, Ahn J, Schmit SL, Chatterjee N: Tests for gene-environment interactions and joint effects with exposure misclassification. Am J Epidemiol 183(3):237-47, 2016.

Figueroa JD, Koutros S, Colt JS, ..., Chatterjee N, et al: Modification of occupational exposures on bladder cancer risk by common genetic polymorphisms. J Natl Cancer Inst 107(11): djv223, 2015.

Sampson JN, Wheeler WA, Yeager M, ..., Chatterjee N: Analysis of heritability and shared heritability based on genome-wide association studies for thirteen cancer types. J Natl Cancer Inst 107(12):djv279, 2015.

Han SS, Rosenberg PS, Ghosh A, Landi MT, Caporaso NE, Chatterjee N: An exposure-weighted score test for genetic associations integrating environmental risk factors. Biometrics 71(3):596-605, 2015.

Ogino S, Campbell PT, Nishihara R, Phipps AI, Beck AH, Sherman ME, Chan AT, Troester MA, Bass AJ, Fitzgerald KC, Irizarry RA, Kelsey KT, Nan H, Peters U, Poole EM, Qian ZR, Tamimi RM, Tchetgen Tchetgen EJ, Tworoger SS, Zhang X, Giovannucci EL, van den Brandt PA, Rosner BA, Wang M, Chatterjee N, Begg CB: Proceedings of the second international molecular pathological epidemiology (MPE) meeting. Cancer Causes Control 26(7):959-72, 2015.

Wang Z, Rajaraman P, Melin BS, Chung CC, Zhang W, McKean-Cowdin R, Michaud D, Yeager M, Ahlbom A, Albanes D, Andersson U, Freeman LE, Buring JE, Butler MA, Carreón T, Feychting M, Gapstur SM, Gaziano JM, Giles GG, Hallmans G, Henriksson R, Hoffman-Bolton J, Inskip PD, Kitahara CM, Marchand LL, Linet MS, Li S, Peters U, Purdue MP, Rothman N, Ruder AM, Sesso HD, Severi G, Stampfer M, Stevens VL, Visvanathan K, Wang SS, White E, Zeleniuch-Jacquotte A, Hoover R, Fraumeni JF, Chatterjee N, Hartge P, Chanock SJ: Further confirmation of germline glioma risk variant rs78378222 in TP53 and its implication in tumor tissues via integrative analysis of TCGA data. Hum Mutat 36(7):684-8, 2015.

Machiela MJ, Zhou W, Sampson JN, ..., Chatterjee N, et al: Characterization of large structural genetic mosaicism in human autosomes. Am J Hum Genetics 96(3):487-97, 2015.

Hosgood HD 3rd, Song M, Hsiung CA, Yin Z, Shu XO, Wang Z, Chatterjee N, et al: Interactions between household air pollution and GWAS-identified lung cancer susceptibility markers in the Female Lung Cancer Consortium in Asia (FLCCA). Hum Genet 134(3):333-41, 2015.

Machiela MJ, Hsiung CA, Shu XO, Seow WJ, Wang Z, Matsuo K, Hong YC, Seow A, Wu C, Hosgood HD 3rd, Chen K, Wang JC, Wen W, Cawthon R, Chatterjee N, et al: Genetic variants associated with longer telomere length are associated with increased lung cancer risk among never-smoking women in Asia: a report from the female lung cancer consortium in Asia. Int J Cancer 137(2):311-9, 2015.

Song M, Kraft P, Joshi AD, Barrdahl M, Chatterjee N: Testing calibration of risk models at extremes of disease risk. Biostatistics 16(1):143-54, 2015.

Cheng TH, Gorman M, Martin L, Barclay E, Casey G, Colon Cancer Family Registry, CGEMS, (includes Chatterjee N) Saunders B, Thomas H, Clark S, Tomlinson I: Common colorectal cancer risk alleles contribute to the multiple colorectal adenoma phenotype, but do not influence colonic polyposis in FAP. Eur J Hum Genet 23(2):260-3, 2015.

 

 

Gwendolyn Clemens   (go to top of document)

 

D'Souza G, Clemens G, Strickler HD, Wiley DJ, Troy T, Struijk L, Gillison M, Fakhry C: Long-term persistence of oral HPV over 7 years of follow-up. JNCI Cancer Spectr 4(5):pkaa047, 2020.

D'Souza G, Clemens G, Troy T, Castillo RG, Struijk L, Waterboer T, Bender N, Pierorazio PM, Best SR, Strickler H, Wiley DJ, Haddad RI, Posner M, Fakhry C: Evaluating the utility and prevalence of HPV biomarkers in oral rinses and serology for HPV-related oropharyngeal cancer. Cancer Prev Res 12(10):689-700, 2019.

Newman-Toker DE, Schaffer AC, Yu-Moe CW, Nassery N, Saber Tehrani AS, Clemens GD, Wang Z, Zhu Y, Fanai M, Siegal D: Serious misdiagnosis-related harms in malpractice claims: The "Big Three" - vascular events, infections, and cancers. Diagnosis 6(3):227-240, 2019.

Sharkey P, Pinilla-Monsalve G, Rigamonti A, Carson K, Robison J, Vivas-Buitrago T, Jusue-Torres I, Clemens G, Sanyal A, Hoffberger J, Sankey EW, Lu J, Adams A, Rigamonti D: Health care expenditures of Medicare beneficiaries with normal pressure hydrocephalus. World Neurosurg 127:e548-e555, 2019.

Bundy DG, Muschelli J, Clemens GD, Strouse JJ, Thompson RE, Casella JF, Miller MR: Preventive care delivery to young children with sickle cell disease. J Pediatr Hematol Oncol 38(4):294-300, 2016.

 

 

Elizabeth Colantuoni (Johnson)   (go to top of document)

 

Rawal H, Young DL, Nikooie R, Al Ani AH, Friedman LA, Vasishta S, Haut ER, Colantuoni E, Needham DM, Dinglas VD: Participant retention in trauma intensive care unit (ICU) follow-up studies: a post-hoc analysis of a previous scoping review. Trauma Surg Acute Care Open 5(1):e000584, 2020.

Friedman LA, Young DL, Nelliot A, Colantuoni E, Mendez-Tellez PA, Needham DM, Dinglas VD: Factors associated with home visits in a 5-year study of acute respiratory distress syndrome survivors. Am J Crit Care 29(6):429-438, 2020.

Hiser S, Toonstra A, Friedman LA, Colantuoni E, Needham DM: Inter-rater reliability of activity measure for post-acute care '6-Clicks' inpatient mobility short form in the intensive care unit. Physiother Res Int 25(4):e1849, 2020.

Dougherty GB, Golden SH, Gross AL, Colantuoni E, Dean LT: Measuring structural racism and its association with BMI. Am J Prev Med 59(4):530-537, 2020.

Milstone AM, Voskertchian A, Koontz DW, Khamash DF, Ross T, Aucott SW, Gilmore MM, Cosgrove SE, Carroll KC, Colantuoni E: Effect of treating parents colonized with Staphylococcus aureus on transmission to neonates in the intensive care unit: a randomized clinical trial. JAMA 323(4):319-328, 2020.

Nunna K, Al-Ani A, Nikooie R, Friedman LA, Raman V, Wadood Z, Vasishta S, Colantuoni E, Needham DM, Dinglas VD: Participant retention in follow-up studies of acute respiratory failure survivors. Respir Care 65(9):1382-1391, 2020.

Semler MW, Bernard GR, Aaron SD, Angus DC, Biros MH, Brower RG, Calfee CS, Colantuoni EA, et al: Identifying clinical research priorities in adult pulmonary and critical care: NHLBI working group report. Am J Respir Crit Care Med 202(4):511-523, 2020.

Hoops KEM, Fackler JC, King A, Colantuoni E, Milstone AM, Woods-Hill C: How good is our diagnostic intuition? Clinician prediction of bacteremia in critically ill children. BMC Med Inform Decis Mak 20(1):144, 2020.

Gupta P, Martin JL, Needham DM, Vangala S, Colantuoni E, Kamdar BB: Use of actigraphy to characterize inactivity and activity in patients in a medical ICU. Heart Lung 49(4):398-406, 2020.

Peitzmeier SM, Wirtz AL, Peryshkina A, Sherman S, Colantuoni E, Beyrer C, Decker MR: Associations between violence and HIV risk behaviors differ by perpetrator among Russian sex workers. AIDS Behav 24(3):812-822, 2020.

Woods-Hill CZ, Koontz DW, King AF, Voskertchian A, Colantuoni EA, Miller MR, Fackler JC, Bonafide CP, Milstone AM, Xie A, Bright Star Authorship group: Practices, perceptions, and attitudes in the evaluation of critically ill children for bacteremia: a national survey. Pediatr Crit Care Med 21(1):e23-e29, 2020.

Kamdar BB, Suri R, Suchyta MR, Digrande KF, Sherwood KD, Colantuoni E, Dinglas VD, Needham DM, Hopkins RO: Return to work after critical illness: a systematic review and meta-analysis. Thorax 75(1):17-27, 2020.

Young DL, Colantuoni E, Friedman LA, Seltzer J, Daley K, Ye B, Brotman DJ, Hoyer EH: Prediction of disposition within 48-hours of hospital admission using patient mobility scores. J Hosp Med 15(9):540-543, 2020.

Diaz I, Colantuoni E, Hanley DF, Rosenblum M: Improved precision in the analysis of randomized trials with survival outcomes, without assuming proportional hazards. Lifetime Data Anal 25(3):439-468, 2019.

Brown CH 4th, Jones EL, Lin C, Esmaili M, Gorashi Y, Skelton RA, Kaganov D, Colantuoni EA, Yanek LR, Neufeld KJ, Kamath V, Sieber FE, Dean CL, Edwards CC 2nd, Hogue CW: Shaping anesthetic techniques to reduce post-operative delirium (SHARP) study: a protocol for a prospective pragmatic randomized controlled trial to evaluate spinal anesthesia with targeted sedation compared with general anesthesia in older adults undergoing lumbar spine fusion surgery. BMC Anesthesiol 19(1):192, 2019.

Rosenberg BJ, Hirano M, Quinzii CM, Colantuoni E, Needham DM, Lederer DJ, Baldwin MR: Growth differentiation factor-15 as a biomarker of strength and recovery in survivors of acute respiratory failure. Thorax 74(11):1099-1101, 2019.

Wilhelm JA, Qiu M, Paina L, Colantuoni E, Mukuru M, Ssengooba F, Bennett S: The impact of PEPFAR transition on HIV service delivery at health facilities in Uganda. PLoS One 14(10):e0223426, 2019.

Kelly J, Colantuoni E, Robinson C, Decker MR: From political to personal violence: links between conflict and non-partner physical violence in post-conflict Liberia. Glob Public Health 14(12):1639-1652, 2019.

Gibbs SE, Kusunoki Y, Colantuoni E, Moreau C: Sexual activity and weekly contraceptive use among young adult women in Michigan. Popul Stud 73(2):233-245, 2019.

Turnbull AE, Hayes MM, Brower RG, Colantuoni E, Basyal PS, White DB, Curtis JR, Needham DM: Effect of documenting prognosis on the information provided to ICU proxies: a randomized trial. Crit Care Med 47(6):757-764, 2019.

Sick-Samuels AC, Woods-Hill CZ, Fackler JC, Tamma PD, Klaus SA, Colantuoni EE, Milstone AM: Association of a blood culture utilization intervention on antibiotic use in a pediatric intensive care unit. Infect Control Hosp Epidemiol 40(4):482-484, 2019.

Khamash DF, Mongodin EF, White JR, Voskertchian A, Hittle L, Colantuoni E, Milstone AM: Association between the developing nasal microbiota of hospitalized neonates and Staphylococcus aureus colonization. Open Forum Infect Dis 6(4):ofz062, 2019.

Wozniak AW, Pfoh ER, Dinglas VD, Pronovost PJ, Needham DM, Colantuoni E: Hospital readmission and subsequent decline in long-term survivors of acute respiratory distress syndrome. Am J Crit Care 28(1):76-80, 2019.

Johnson J, Suwantarat N, Colantuoni E, Ross TL, Aucott SW, Carroll KC, Milstone AM: The impact of chlorhexidine gluconate bathing on skin bacterial burden of neonates admitted to the Neonatal Intensive Care Unit. J Perinatol 39(1):63-71, 2019.

Ettinger AK, Riley AW, Colantuoni E, Mendelson T: Trajectories of early parenting practices among low-income ethnically diverse women. J Child Fam Stud 27(2):615-628, 2018.

Woods-Hill CZ, Lee L, Xie A, King AF, Voskertchian A, Klaus SA, Smith MM, Miller MR, Colantuoni EA, Fackler JC, Milstone AM: Dissemination of a novel framework to improve blood culture use in pediatric critical care. Pediatr Qual Saf 3(5):e112, 2018.

Hiser S, Toonstra A, Friedman LA, Colantuoni E, Connolly B, Needham DM: Interrater reliability of the functional status score for the intensive care unit. JACPT 9(4):186-192, 2018.

Turnbull AE, Sahetya SK, Colantuoni E, Kweku J, Nikooie R, Curtis JR: Inter-rater agreement of intensivists evaluating the goal concordance of preference-sensitive ICU interventions. J Pain Symptom Manage 56(3):406-413, 2018.

Voskertchian A, Akinboyo IC, Colantuoni E, Johnson J, Milstone AM: Association of an active surveillance and decolonization program on incidence of clinical cultures growing Staphylococcus aureus in the neonatal intensive care unit. Infec Control Hosp Epidemiol 39(7):882-884, 2018.

Heins SE, Wozniak AW, Colantuoni E, Sepulveda KA, Mendez-Tellez PA, Dennison-Himmelfarb C, Needham DM, Dinglas VD: Factors associated with missed assessments in a 2-year longitudinal study of acute respiratory distress syndrome survivors. BMC Med Res Methodol 18(1):55, 2018.

Mroz TM, Meadow A, Colantuoni E, Leff B, Wolff JL: Home health agency characteristics and quality outcomes for Medicare beneficiaries with rehabilitation-sensitive conditions. Arch Phys Med Rehabil 99(6):1090-1098, 2018.

Wong MS, Chan KS, Jones-Smith JC, Colantuoni E, Thorpe RJ Jr, Bleich SN: The neighborhood environment and obesity: understanding variation by race/ethnicity. Prev Med 111:371-377, 2018.

Kelly JTD, Colantuoni E, Robinson C, Decker MR: From the battlefield to the bedroom: a multilevel analysis of the links between political conflict and intimate partner violence in Liberia. BMJ Glob Health 3(2):e000668, 2018.

Kamdar BB, Sepulveda KA, Chong A, Lord RK, Dinglas VD, Mendez-Tellez PA, Shanholtz C, Colantuoni E, von Wachter TM, Pronovost PJ, Needham DM: Return to work and lost earnings after acute respiratory distress syndrome: a 5-year prospective, longitudinal study of long-term survivors. Thorax 73(2):125-133, 2018.

Bienvenu OJ, Friedman LA, Colantuoni E, Dinglas VD, Sepulveda KA, Mendez-Tellez P, Shanholz C, Pronovost PJ, Needham DM: Psychiatric symptoms after acute respiratory distress syndrome: a 5-year longitudinal study. Intensive Care Med 44(1):38-47, 2018.

Colantuoni E, Scharfstein DO, Wang C, Hashem MD, Leroux A, Needham DM, Girard TD: Statistical methods to compare functional outcomes in randomized controlled trials with high mortality. BMJ 360:j5748, 2018.

Dinglas VD, Chessare CM, Davis WE, Parker A, Friedman LA, Colantuoni E, Bingham CO, Turnbull AE, Needham DM: Perspectives of survivors, families and researchers on key outcomes for research in acute respiratory failure. Thorax 73(1):7-12, 2018.

Qian T, Colantuoni E, Fisher A, Rosenblum M, Alzheimer's Disease Neuroimaging Initiative: Sensitivity of adaptive enrichment trial designs to accrual rates, time to outcome measurement, and prognostic variables. Contemp Clin Trials Commun 8:39-48, 2017.

Schreiber MP, Colantuoni E, Neufeld KJ, Needham DM: Comparing analyses of corticosteroids and transition to delirium in critically ill patients. Intensive Care Med 43(12):1933-1935, 2017.

Palta P, Carlson MC, Crum RM, Colantuoni E, Sharrett AR, Yasar S, Nahin RL, DeKosky ST, Snitz B, Lopez O, Williamson JD, Furberg CD, Rapp SR, Golden SH: Diabetes and cognitive decline in older adults: the Ginkgo Evaluation of Memory Study. J Gerontol A Biol Sci Med Sci 73(1):123-130, 2017.

Truong AD, Kho ME, Brower RG, Feldman DR, Colantuoni E, Needham DM: Effects of neuromuscular electrical stimulation on cytokines in peripheral blood for healthy participants: a prospective, single-blinded study. Clin Physiol Funct Imaging 37(3):255-262, 2017.

Kamdar BB, Huang M, Dinglas VD, Colantuoni E, von Wachter TM, Hopkins RO, Needham DM, National Heart, Lung, and Blood Institute Acute Respiratory Distress Syndrome Network: Joblessness and lost earnings after acute respiratory distress syndrome in a 1-year national multicenter study. Am J Respir Crit Care Med 196(8):1012-1020, 2017.

Wong MS, Jones-Smith JC, Colantuoni E, Thorpe RJ Jr, Bleich SN, Chan KS: The longitudinal association between early childhood obesity and fathers' involvement in caregiving and decision-making. Obesity 25(10):1754-1761, 2017.

Balakrishnan P, Beaty T, Young JH, Colantuoni E, Matsushita K: Methods to estimate underlying blood pressure: the Atherosclerosis Risk in Communities (ARIC) Study. PLoS One 12(7):e0179234, 2017.

Colston JM, Penataro Yori P, Colantuoni E, Moulton LH, Ambikapathi R, Lee G, Rengifo Trigoso D, Siguas Salas M, Kosek MN: A methodologic framework for modeling and assessing biomarkers of environmental enteropathy as predictors of growth in infants: an example from a Peruvian birth cohort. Am J Clin Nutr 106(1):245-255, 2017.

Wang C, Scharfstein DO, Colantuoni E, Girard TD, Yan Y: Inference in randomized trials with death and missingness. Biometrics 73(2):431-440, 2017.

Totten M, Ross T, Voskertchian A, Colantuoni E, Milstone AM, Carroll KC: Analysis of morphologically similar staphylococcus aureus colonies for assessment of phenotypic and genotypic correlation. J Clin Microbiol 55(7):2285-2286, 2017.

Ruhl AP, Huang M, Colantuoni E, Karmarkar T, Dinglas VD, Hopkins RO, Needham DM, with the National Institutes of Health, National Heart, Lung, and Blood Institute Acute Respiratory Distress Syndrome Network: Healthcare utilization and costs in ARDS survivors: a 1-year longitudinal national US multicenter study. Intensive Care Med 43(7):980-991, 2017.

Colligan EM, Pines JM, Colantuoni E, Wolff JL: Factors associated with frequent emergency department use in the Medicare population. Med Care Res Rev 74(3):311-327, 2017.

Lashoher A, Schneider EB, Juillard C, Stevens K, Colantuoni E, et al: Implementation of the World Health Organization Trauma Care Checklist Program in 11 centers across multiple economic strata: effect on care process measures. World J Surg 41(4):954-962, 2017.

Brodsky MB, Huang M, Shanholtz C, Mendez-Tellez PA, Palmer JB, Colantuoni E, Needham DM: Recovery from dysphagia symptoms after oral endotracheal intubation in acute respiratory distress syndrome survivors. a 5-year longitudinal study. Ann Am Thorac Soc 14(3):376-383, 2017.

Dinglas VD, Aronson Friedman L, Colantuoni E, Mendez-Tellez PA, Shanholtz CB, Ciesla ND, Pronovost PJ, Needham DM: Muscle weakness and 5-year survival in acute respiratory distress syndrome survivors. Crit Care Med 45(3):446-453, 2017.

Woods-Hill CZ, Fackler J, Nelson McMillan K, Ascenzi J, Martinez DA, Toerper MF, Voskertchian A, Colantuoni E, Klaus SA, Levin S, Milstone AM: Association of a clinical practice guideline with blood culture use in critically ill children. JAMA Pediatr 171(2):157-164, 2017.

Ruhl AP, Huang M, Colantuoni E, Lord RK, Dinglas VD, Chong A, Sepulveda KA, Mendez-Tellez PA, Shanholtz CB, Steinwachs DM, Pronovost PJ, Needham DM: Healthcare resource use and costs in long-term survivors of acute respiratory distress syndrome: a 5-year longitudinal cohort study. Crit Care Med 45(2):196-204, 2017.

Patil P, Colantuoni E, Leek JT, Rosenblum M: Genomic and clinical predictors for improving estimator precision in randomized trials of breast cancer treatments. Contemp Clin Trials Commun 3:48-54, 2016.

Heyland DK, Stapleton RD, Mourtzakis M, Hough CL, Morris P, Deutz NE, Colantuoni E, Day A, Prado CM, Needham DM: Combining nutrition and exercise to optimize survival and recovery from critical illness: Conceptual and methodological issues. Clin Nutr 35(5):1196-206, 2016.

Pfoh ER, Wozniak AW, Colantuoni E, Dinglas VD, Mendez-Tellez PA, Shanholtz C, Ciesla ND, Pronovost PJ, Needham DM: Physical declines occurring after hospital discharge in ARDS survivors: a 5-year longitudinal study. Intensive Care Med 42(10):1557-66, 2016.

Allen D, Belcher HM, Young A, Gibson LW, Colantuoni E, Trent M: BMI, body image, emotional well-being and weight-control behaviors in urban African American adolescents. Int J Child Health Nutr 5(3):55-104, 2016.

Kamdar BB, Combs MP, Colantuoni E, King LM, Niessen T, Neufeld KJ, Collop NA, Needham DM: The association of sleep quality, delirium, and sedation status with daily participation in physical therapy in the ICU. Crit Care 20(1):261, 2016.

Colantuoni E, Dinglas VD, Ely EW, Hopkins RO, Needham DM: Statistical methods for evaluating delirium in the ICU. Lancet Respir Med 4(7):534-6, 2016.

Diaz I, Colantuoni E, Rosenblum M: Enhanced precision in the analysis of randomized trials with ordinal outcomes. Biometrics 72(2):422-31, 2016.

Colligan EM, Pines JM, Colantuoni E, Howell B, Wolff JL: Risk factors for persistent frequent emergency department use in medicare beneficiaries. Ann Emerg Med 67(6):721-9, 2016.

Hoyer EH, Friedman M, Lavezza A, Wagner-Kosmakos K, Lewis-Cherry R, Skolnik JL, Byers SP, Atanelov L, Colantuoni E, Brotman DJ, Needham DM: Promoting mobility and reducing length of stay in hospitalized general medicine patients: A quality-improvement project. J Hosp Med 11(5):341-7, 2016.

Huang M, Parker AM, Bienvenu OJ, Dinglas VD, Colantuoni E, Hopkins RO, Needham DM, National Institutes of Health, National Heart, Lung, and Blood Institute Acute Respiratory Distress Syndrome Network: Psychiatric symptoms in acute respiratory distress syndrome survivors: a 1-year national multicenter study. Crit Care Med 44(5):954-65, 2016.

Dinglas VD, Hopkins RO, Wozniak AW, Hough CL, Morris PE, Jackson JC, Mendez-Tellez PA, Bienvenu OJ, Ely EW, Colantuoni E, Needham DM: One-year outcomes of rosuvastatin versus placebo in sepsis-associated acute respiratory distress syndrome: prospective follow-up of SAILS randomised trial. Thorax 71(5):401-10, 2016.

Popoola VO, Colantuoni E, Suwantarat N, Pierce R, Carroll KC, Aucott SW, Milstone AM: Active surveillance cultures and decolonization to reduce Staphylococcus aureus infections in the neonatal intensive care unit. Infect Control Hosp Epidemiol 37(4):381-7, 2016.

Kovacich A, Tamma PD, Advani S, Popoola VO, Colantuoni E, Gosey L, Milstone AM: Peripherally inserted central venous catheter complications in children receiving outpatient parenteral antibiotic therapy (OPAT). Infect Control Hosp Epidemiol 37(4):420-4, 2016.

Needham DM, Colantuoni E, Dinglas VD, Hough CL, Wozniak AW, Jackson JC, Morris PE, Mendez-Tellez PA, Ely EW, Hopkins RO: Rosuvastatin versus placebo for delirium in intensive care and subsequent cognitive impairment in patients with sepsis-associated acute respiratory distress syndrome: an ancillary study to a randomised controlled trial. Lancet Respir Med 4(3):203-12, 2016.

Rinke ML, Driscoll A, Mikat-Stevens N, Healy J, Colantuoni E, Elias AF, Pletcher BA, Gubernick RS, Larson I, Chung WK, Tarini BA: A quality improvement collaborative to improve pediatric primary care genetic services. Pediatrics 137(2):1-10, 2016.

Pinchoff J, Hamapumbu H, Kobayashi T, Simubali L, Stevenson JC, Norris DE, Colantuoni E, Thuma PE, Moss WJ, Southern Africa International Centers of Excellence for Malaria Research: Factors associated with sustained use of long-lasting insecticide-treated nets following a reduction in malaria transmission in southern Zambia. Am J Trop Med Hyg 93(5):954-60, 2015.

Gellar JE, Colantuoni E, Needham DM, Crainiceanu CM: Cox regression models with functional covariates for survival data. Stat Modelling 15(3):256-278, 2015.

Rinke ML, Bundy DG, Abdullah F, Colantuoni E, Zhang Y, Miller MR: State-mandated hospital infection reporting is not associated with decreased pediatric health care-associated infections. J Patient Saf 11(3):123-34, 2015.

Milstone AM, Koontz DW, Voskertchian A, Popoola VO, Harrelson K, Ross T, Aucott SW, Gilmore MM, Carroll KC, Colantuoni E: Treating parents to reduce NICU transmission of Staphylococcus aureus (TREAT PARENTS) trial: protocol of a multisite randomised, double-blind, placebo-controlled trial. BMJ Open 5(9):e009274, 2015.

Lee-Kwan SH, Bleich SN, Kim H, Colantuoni E, Gittelsohn J: Environmental intervention in carryout restaurants increases sales of healthy menu items in a low-income urban setting. Am J Health Promot 29(6):357-64, 2015.

Rotondano G, Rispo A,..., Colantuoni E, et al: Quality of bowel cleansing in hospitalized patients undergoing colonoscopy: a multicentre prospective regional study. Dig Liver Dis 47(8):669-74, 2015.

Colantuoni E, Rosenblum M: Leveraging prognostic baseline variables to gain precision in randomized trials. Stat Med 34(18):2602-17, 2015.

Alghnam S, Wegener ST, Bhalla K, Colantuoni E, Castillo R: Long-term outcomes of individuals injured in motor vehicle crashes: a population-based study. Injury 46(8):1503-1508, 2015.

Rinke ML, Chen AR, Milstone AM, Hebert LC, Bundy DG, Colantuoni E, Fratino L, Herpst C, Kokoszka M, Miller MR: Bringing central line-associated bloodstream infection prevention home: catheter maintenance practices and beliefs of pediatric oncology patients and families. Jt Comm J Qual Patient Saf 41(4):177-4, 2015.

Ruhl AP, Lord RK, Panek JA, Colantuoni E, Sepulveda KA, Chong A, Dinglas VD, Shanholtz CB, Pronovost PJ, Steinwachs DM, Needham DM: Health care resource use and costs of two-year survivors of acute lung injury. An observational cohort study. Ann Am Thorac Soc 12(3):392-401, 2015.

Bienvenu OJ, Colantuoni E, Mendez-Tellez PA, Shanholtz C, Dennison-Himmelfarb CR, Pronovost PJ, Needham DM: Cooccurrence of and remission from general anxiety, depression, and posttraumatic stress disorder symptoms after acute lung injury: a 2-year longitudinal study. Crit Care Med 43(3):642-53, 2015.

Needham DM, Yang T, Dinglas VD, Mendez-Tellez PA, Shanholtz C, Sevransky JE, Brower RG, Pronovost PJ, Colantuoni E: Timing of low tidal volume ventilation and intensive care unit mortality in acute respiratory distress syndrome. A prospective cohort study. Am J Respir Crit Care Med 191(2):177-85, 2015.

Dinglas VD, Huang M, Sepulveda KA, Pinedo M, Hopkins RO, Colantuoni E, Needham DM, NIH NHLBI ARDS Network: Personalized contact strategies and predictors of time to survey completion: analysis of two sequential randomized trials. BMC Med Res Methodol 15(1):5, 2015.

Kamdar BB, Niessen T, Colantuoni E, King LM, Neufeld KJ, Bienvenu OJ, Rowden AM, Collop NA, Needham DM: Delirium transitions in the medical ICU: exploring the role of sleep quality and other factors. Crit Care Med 43(1):135-41, 2015.

 

 

Ciprian Crainiceanu  (go to top of document)

 

Smirnova E, Leroux A, Cao Q, Tabacu L, Zipunnikov V, Crainiceanu C, Urbanek JK: The predictive performance of objective measures of physical activity derived from accelerometry data for 5-year all-cause mortality in older adults: National Health and Nutritional Examination Survey 2003-2006. J Gerontol A Biol Sci Med Sci 75(9):1779-1785, 2020.

Hannawi Y, Muschelli J, Mulder M, Sharrock M, Storm C, Leithner C, Crainiceanu CM, Stevens RD: Postcardiac arrest neurological prognostication with quantitative regional cerebral densitometry. Resuscitation 154:101-109, 2020.

Punjabi NM, Patil S, Crainiceanu C, Aurora RN: Variability and misclassification of sleep apnea severity based on multi-night testing. Chest 158(1):365-373, 2020.

Filippatou AG, Lambe J, Sotirchos ES, Fitzgerald KC, Aston A, Murphy OC, Pellegrini N, Fioravante N, Risher H, Ogbuokiri E, Kwakyi O, Toliver B, Davis S, Luciano N, Crainiceanu C, Prince JL, Mowry EM, Calabresi PA, Saidha S: Association of body mass index with longitudinal rates of retinal atrophy in multiple sclerosis. Mult Scler 26(7):843-854, 2020.

Sotirchos ES, Gonzalez Caldito N, Filippatou A, Fitzgerald KC, Murphy OC, Lambe J, Nguyen J, Button J, Ogbuokiri E, Crainiceanu CM, Prince JL, Calabresi PA, Saidha S, International Multiple Sclerosis Visual System (IMSVISUAL) Consortium: Progressive multiple sclerosis is associated with faster and specific retinal layer atrophy. Ann Neurol 87(6):885-896, 2020.

Carass A, Roy S, Gherman A, Reinhold JC, Jesson A, Arbel T, Maier O, Handels H, Ghafoorian M, Platel B, Birenbaum A, Greenspan H, Pham DL, Crainiceanu CM, Calabresi PA, Prince JL, Roncal WRG, Shinohara RT, Oguz I: Evaluating white matter lesion segmentations with refined Sorensen-Dice analysis. Sci Rep 10(1):8242, 2020.

Crainiceanu CM, Crainiceanu A: The upstrap. Biostatistics 21(2):e164-e166, 2020.

Sotirchos ES, Gonzalez-Caldito N, Dewey BE, Fitzgerald KC, Glaister J, Filippatou A, Ogbuokiri E, Feldman S, Kwakyi O, Risher H, Crainiceanu C, Pham DL, Van Zijl PC, Mowry EM, Reich DS, Prince JL, Calabresi PA, Saidha S: Effect of disease-modifying therapies on subcortical gray matter atrophy in multiple sclerosis. Mult Scler 26(3):312-321, 2020.

Benjamin-Neelon SE, Bai J, Ostbye T, Neelon B, Pate RR, Crainiceanu C: Physical activity and adiposity in a racially diverse cohort of US infants. Obesity 28(3):631-637, 2020.

Heravi AS, Etzkorn LH, Urbanek JK, Crainiceanu CM, Punjabi NM, Ashikaga H, Brown TT, Budoff MJ, D'Souza G, Magnani JW, Palella FJ Jr, Berger RD, Wu KC, Post WS: HIV infection is associated with variability in ventricular repolarization: the Multicenter AIDS Cohort Study (MACS). Circulation 141(3):176-187, 2020.

Johns JT, Crainiceanu C, Zipunnikov V, Gellar J: Variable-domain functional principal component analysis. J Comp Graph Stat 28(4):993-1006, 2019.

Ding T, Cohen AD, O'Connor EE, Karim HT, Crainiceanu A, Muschelli J, Lopez O, Klunk WE, Aizenstein HJ, Krafty R, Crainiceanu CM, Tudorascu DL: An improved algorithm of white matter hyperintensity detection in elderly adults. Neuroimage Clin 25:102151, 2019.

Nguyen J, Rothman A, Gonzalez N, Avornu A, Ogbuokiri E, Balcer LJ, Galetta SL, Frohman EM, Frohman T, Crainiceanu C, Calabresi PA, Saidha S: Macular ganglion cell and inner plexiform layer thickness is more strongly associated eith visual function in multiple sclerosis than Bruch membrane opening-minimum rim width or peripapillary retinal nerve fiber layer thicknesses. J Neuroophthalmol 39(4):444-450, 2019.

Karas M, Bai J, Straczkiewicz M, Harezlak J, Glynn NW, Harris T, Zipunnikov V, Crainiceanu C, Urbanek JK: Accelerometry data in health research: challenges and opportunities. Stat Biosci 11(2):210-237, 2019.

Leroux A, Di J, Smirnova E, McGuffey EJ, Cao Q, Bayatmokhtari E, Tabacu L, Zipunnikov V, Urbanek JK, Crainiceanu C: Organizing and analyzing the activity data in NHANES. Stat Biosci 11(2):262-287, 2019.

Sotirchos ES, Fitzgerald KC, Crainiceanu CM: Reporting of R2 statistics for mixed-effects regression models. JAMA Neurol 76(4):507, 2019.

Merikangas KR, Swendsen J, Hickie IB, Cui L, Shou H, Merikangas AK, Zhang J, Lamers F, Crainiceanu C, Volkow ND, Zipunnikov V: Real-time mobile monitoring of the dynamic associations among motor activity, energy, mood, and sleep in adults with bipolar disorder. JAMA Psychiatry 76(2):190-198, 2019.

Kudchadkar SR, Aljohani O, Johns J, Leroux A, Alsafi E, Jastaniah E, Gottschalk A, Shata NJ, Al-Harbi A, Gergen D, Nadkarni A, Crainiceanu C: Day-night activity in hospitalized children after major surgery: an analysis of 2271 hospital days. J Pediatr 209:190-197, 2019.

Oh J, Ontaneda D, Azevedo C, Klawiter EC, Absinta M, Arnold DL, Bakshi R, Calabresi PA, Crainiceanu C, ..., Shinohara RT, et al: Imaging outcome measures of neuroprotection and repair in MS: A consensus statement from NAIMS. Neurology 92(11):519-533, 2019.

Muschelli J, Gherman A, Fortin JP, Avants B, Whitcher B, Clayden JD, Caffo BS, Crainiceanu CM: Neuroconductor: an R platform for medical imaging analysis. Biostatistics 20(2):218-239, 2019.

Rothman A, Murphy OC, Fitzgerald KC, Button J, Gordon-Lipkin E, Ratchford JN, Newsome SD, Mowry EM, Sotirchos ES, Syc-Mazurek SB, Nguyen J, Caldito NG, Balcer LJ, Frohman EM, Frohman TC, Reich DS, Crainiceanu C, Saidha S, Calabresi PA: Retinal measurements predict 10-year disability in multiple sclerosis. Ann Clin Transl Neurol 6(2):222-232, 2019.

Oh J, Bakshi R, Calabresi PA, Crainiceanu C, Henry RG, Nair G, Papinutto N, Constable RT, Reich DS, Pelletier D, Rooney W, Schwartz D, Tagge I, Shinohara RT, Simon JH, Sicotte NL, NAIMS Cooperative Steering Committee: The NAIMS cooperative pilot project: Design, implementation and future directions. Mult Scler 24(13):1770-1772, 2018.

Caldito NG, Saidha S, Sotirchos ES, Dewey BE, Cowley NJ, Glaister J, Fitzgerald KC, Al-Louzi O, Nguyen J, Rothman A, Ogbuokiri E, Fioravante N, Feldman S, Kwakyi O, Risher H, Kimbrough D, Frohman TC, Frohman E, Balcer L, Crainiceanu C, Van Zijl PCM, Mowry EM, Reich DS, Oh J, Pham DL, Prince J, Calabresi PA: Brain and retinal atrophy in African-Americans versus Caucasian-Americans with multiple sclerosis: a longitudinal study. Brain 141(11):3115-3129, 2018.

Muschelli J, Sweeney E, Crainiceanu CM: freesurfer: Connecting the Freesurfer software with R. F1000Res 7:599, 2018.

Smirnova E, Ivanescu A, Bai J, Crainiceanu CM: A practical guide to big data. Stat Probab Lett 136:25-29, 2018.

Bai J, Sun Y, Schrack JA, Crainiceanu CM, Wang MC: A two-stage model for wearable device data. Biometrics 74(2):744-752, 2018.

Nguyen J, Rothman A, Fitzgerald K, Whetstone A, Syc-Mazurek S, Aquino J, Balcer LJ, Frohman EM, Frohman TC, Crainiceanu C, Beier M, Newsome SD, Calabresi PA, Saidha S: Visual pathway measures are associated with neuropsychological function in multiple sclerosis. Curr Eye Res 43(7):941-948, 2018.

Grau-Perez M, Navas-Acien A, Galan-Chilet I, Briongos-Figuero LS, Morchon-Simon D, Bermudez JD, Crainiceanu CM, de Marco G, Rentero-Garrido P, Garcia-Barrera T, Gomez-Ariza JL, Casasnovas JA, Martin-Escudero JC, Redon J, Chaves FJ, Tellez-Plaza M: Arsenic exposure, diabetes-related genes and diabetes prevalence in a general population from Spain. Environ Pollut 235:948-955, 2018.

Urbanek JK, Zipunnikov V, Harris T, Crainiceanu C, Harezlak J, Glynn NW: Validation of gait characteristics extracted from raw accelerometry during walking against measures of physical function, mobility, fatigability, and fitness. J Gerontol A Biol Sci Med Sci 73(5):676-681, 2018.

Schrack JA, Leroux A, Fleg JL, Zipunnikov V, Simonsick EM, Studenski SA, Crainiceanu C, Ferrucci L: Using heart rate and accelerometry to define quantity and intensity of physical activity in older adults. J Gerontol A Biol Sci Med Sci 73(5):668-675, 2018.

Grigsby MR, Di J, Leroux A, Zipunnikov V, Xiao L, Crainiceanu C, Checkley W: Novel metrics for growth model selection. Emerg Themes Epidemiol 1 5:4, 2018.

Park SY, Staicu AM, Xiao L, Crainiceanu CM: Simple fixed-effects inference for complex functional models. Biostatistics 19(2):137-152, 2018.

Leroux A, Xiao L, Crainiceanu C, Checkley W: Dynamic prediction in functional concurrent regression with an application to child growth. Stat Med 37(8):1376-1388, 2018.

Chen OY, Crainiceanu C, Ogburn EL, Caffo BS, Wager TD, Lindquist MA: High-dimensional multivariate mediation with application to neuroimaging data. Biostatistics 19(2):121-136, 2018.

Urbanek JK, Spira AP, Di J, Leroux A, Crainiceanu C, Zipunnikov V: Epidemiology of objectively measured bedtime and chronotype in US adolescents and adults: NHANES 2003-2006. Chronobiol Int 35(3):416-434, 2018.

Urbanek JK, Zipunnikov V, Harris T, Fadel W, Glynn N, Koster A, Caserotti P, Crainiceanu C, Harezlak J: Prediction of sustained harmonic walking in the free-living environment using raw accelerometry data. Physiol Meas 39(2):02NT02, 2018.

Aurora RN, Crainiceanu C, Gottlieb DJ, Kim JS, Punjabi NM: Obstructive sleep apnea during REM sleep and cardiovascular disease. Am J Respir Crit Care Med 197(5):653-660, 2018.

Xiao L, Li C, Checkley W, Crainiceanu C: Fast covariance estimation for sparse functional data. Stat Comput 28(3):511-522, 2018.

Webb-Vargas Y, Chen S, Fisher A, Mejia A, Xu Y, Crainiceanu C, Caffo B, Lindquist MA: Big data and neuroimaging. Stat Biosci 9(2):543-558, 2017.

Ruiz-Hernandez A, Navas-Acien A, Pastor-Barriuso R, Crainiceanu CM, Redon J, Guallar E, Tellez-Plaza M: Declining exposures to lead and cadmium contribute to explaining the reduction of cardiovascular mortality in the US population, 1988-2004. Int J Epidemiol 46(6):1903-1912, 2017.

Tine F, Attanasio M, Muggeo VMR, Crainiceanu CM: Evidence of bias in randomized clinical trials of hepatitis C interferon therapies. Clin Trials 14(5):483-488, 2017.

Cooper R, Huang L, Hardy R, Crainiceanu A, Harris T, Schrack JA, Crainiceanu C, Kuh D: Obesity history and daily patterns of physical activity at age 60-64 years: findings from the MRC National Survey of Health and Development. J Gerontol A Biol Sci Med Sci 72(10):1424-1430, 2017.

Shou H, Cui L, Hickie I, Lameira D, Lamers F, Zhang J, Crainiceanu C, Zipunnikov V, Merikangas KR: Dysregulation of objectively assessed 24-hour motor activity patterns as a potential marker for bipolar I disorder: results of a community-based family study. Transl Psychiatry 7(8):e1211, 2017.

Mateen FJ, Grau-Perez M, Pollak JS, Moon KA, Howard BV, Umans JG, Best LG, Francesconi KA, Goessler W, Crainiceanu C, Guallar E, Devereux RB, Roman MJ, Navas-Acien A: Chronic arsenic exposure and risk of carotid artery disease: The Strong Heart Study. Environ Res 157:127-134, 2017.

Carass A, Roy S, Jog A, Cuzzocreo JL, Magrath E, Gherman A, Button J, Nguyen J, Bazin PL, Calabresi PA, Crainiceanu CM, Ellingsen LM, Reich DS, Prince JL, Pham DL: Longitudinal multiple sclerosis lesion segmentation data resource. Data Brief 12:346-350, 2017.

Huang L, Reiss PT, Xiao L, Zipunnikov V, Lindquist MA, Crainiceanu CM: Two-way principal component analysis for matrix-variate data, with an application to functional magnetic resonance imaging data. Biostatistics 18(2):214-229, 2017.

Muschelli J, Sweeney EM, Ullman NL, Vespa P, Hanley DF, Crainiceanu CM: PItcHPERFeCT: Primary Intracranial Hemorrhage Probability Estimation using Random Forests on CT. Neuroimage Clin 14:379-390, 2017.

Carass A, Roy S, Jog A, Cuzzocreo JL, Magrath E, Gherman A, ..., Crainiceanu CM, et al: Longitudinal multiple sclerosis lesion segmentation: Resource and challenge. Neuroimage 148:77-102, 2017.

Urbanek JK, Harezlak J, Glynn NW, Harris T, Crainiceanu C, Zipunnikov V: Stride variability measures derived from wrist- and hip-worn accelerometers. Gait Posture 52:217-223, 2017.

Tudorascu DL, Karim HT, Maronge JM, Alhilali L, Fakhran S, Aizenstein HJ, Muschelli J, Crainiceanu CM: Reproducibility and bias in healthy brain segmentation: comparison of two popular neuroimaging platforms. Front Neurosci 10:503, 2016.

Aurora RN, Kim JS, Crainiceanu C, O'Hearn D, Punjabi NM: Habitual sleep duration and all-cause mortality in a general community sample. Sleep 39(11):1903-1909, 2016.

Yue C, Zipunnikov V, Bazin PL, Pham D, Reich D, Crainiceanu C, Caffo B: Parameterization of white matter manifold-like structures using principal surfaces. JASA 111(515):1050-1060, 2016.

Putcha N, Crainiceanu C, Norato G, Samet J, Quan SF, Gottlieb DJ, Redline S, Punjabi NM: Influence of lung function and sleep-disordered breathing on all-cause mortality. A community-based study. Am J Respir Crit Care Med 194(8):1007-1014, 2016.

Straczkiewicz M, Urbanek JK, Fadel WF, Crainiceanu CM, Harezlak J: Automatic car driving detection using raw accelerometry data. Physiol Meas 37(10):1757-1769, 2016.

Bai J, Di C, Xiao L, Evenson KR, LaCroix AZ, Crainiceanu CM, Buchner DM: An activity index for raw accelerometry data and its comparison with other activity metrics. PLoS One 11(8):e0160644, 2016.

Schrack JA, Xiao L, Zipunnikov V, Simonsick EM, Studenski S, Crainiceanu C, Ferrucci L: Quantifying longitudinal patterns and trends of objectively measured physical activity across the age spectrum: 2104 Board #256 June 2, 2: 00 PM - 3: 30 PM. Med Sci Sports Exerc 48(5 Suppl 1):592, 2016.

Bhargava P, Steele SU, Waubant E, Revirajan NR, Marcus J, Dembele M, Cassard SD, Hollis BW, Crainiceanu C, Mowry EM: Multiple sclerosis patients have a diminished serologic response to vitamin D supplementation compared to healthy controls. Mult Scler 22(6):753-60, 2016.

Xiao L, He B, Koster A, Caserotti P, Lange-Maia B, Glynn NW, Harris TB, Crainiceanu CM: Movement prediction using accelerometers in a human population. Biometrics 72(2):513-24, 2016.

Sweeney E, Crainiceanu C, Gertheiss J: Testing differentially expressed genes in dose-response studies and with ordinal phenotypes. Stat Appl Genet Mol Biol 15(3):213-35, 2016.

Shou H, Shinohara RT, Liu H, Reich DS, Crainiceanu CM: Soft null hypotheses: a case study of image enhancement detection in brain lesions. J Comp Graph Stat 25(2):570-588, 2016.

Al-Louzi OA, Bhargava P, Newsome SD, Balcer LJ, Frohman EM, Crainiceanu C, Calabresi PA, Saidha S: Outer retinal changes following acute optic neuritis. Mult Scler 22(3):362-72, 2016.

Fortin JP, Sweeney EM, Muschelli J, Crainiceanu CM, Shinohara RT, Alzheimer's Disease Neuroimaging Initiative: Removing inter-subject technical variability in magnetic resonance imaging studies. Neuroimage 132:198-212, 2016.

Xiao L, Zipunnikov V, Ruppert D, Crainiceanu C: Fast covariance estimation for high-dimensional functional data. Stat Comput 26(1):409-421, 2016.

Grajeda LM, Ivanescu A, Saito M, Crainiceanu C, Jaganath D, Gilman RH, Crabtree JE, Kelleher D, Cabrera L, Cama V, Checkley W: Modelling subject-specific childhood growth using linear mixed-effect models with cubic regression splines. Emerg Themes Epidemiol 13:1, 2016.

Swihart BJ, Punjabi NM, Crainiceanu CM: Modeling sleep fragmentation in sleep hypnograms: An instance of fast, scalable discrete-state, discrete-time analyses. Comput Stat Data Anal 89:1-11, 2015.

Sweeney EM, Shinohara RT, Dewey BE, Schindler MK, Muschelli J, Reich DS, Crainiceanu CM, Eloyan A: Relating multi-sequence longitudinal intensity profiles and clinical covariates in incident multiple sclerosis lesions. Neuroimage Clin 10:1-17, 2015.

Ho V, Crainiceanu CM, Punjabi NM, Redline S, Gottlieb DJ: Calibration model for apnea-hypopnea indices: Impact of alternative criteria for hypopneas. Sleep 38(12):1887-92, 2015.

Saidha S, Al-Louzi O, Ratchford JN, Bhargava P, Oh J, Newsome SD, Prince JL, Pham D, Roy S, van Zijl P, Balcer LJ, Frohman EM, Reich DS, Crainiceanu C, Calabresi PA: Optical coherence tomography reflects brain atrophy in multiple sclerosis: a four-year study. Ann Neurol 78(5):801-13, 2015.

Muschelli J, Ullman NL, Sweeney EM, Eloyan A, Martin N, Vespa P, Hanley DF, Crainiceanu CM: Quantitative intracerebral hemorrhage localization. Stroke 46(11):3270-3, 2015.

Gellar JE, Colantuoni E, Needham DM, Crainiceanu CM: Cox regression models with functional covariates for survival data. Stat Modelling 15(3):256-278, 2015.

Pichard LE, Crainiceanu CM, Pashai P, Kostuk EW, Fujioka A, Shirahata M: Role of BK channels in murine carotid body neural responses in vivo. Adv Exp Med Biol 860:325-33, 2015.

Muschelli J, Sweeney E, Lindquist M, Crainiceanu C: fslr: connecting the FSL software with R. R Journal 7(1):163-175, 2015.

Muschelli J, Ullman NL, Mould WA, Vespa P, Hanley DF, Crainiceanu CM: Validated automatic brain extraction of head CT images. Neuroimage 114:379-85, 2015.

Schrack J, Zipunnikov V, Crainiceanu C: Electronic devices and applications to track physical activity. JAMA 313(20):2079-80, 2015.

Steeves JA, Murphy RA, Crainiceanu CM, Zipunnikov V, Van Domelen DR, Harris TB: Daily patterns of physical activity by type 2 diabetes definition: comparing diabetes, prediabetes, and participants with normal glucose levels in NHANES 2003-2006. Prev Med Rep 2:152-157, 2015.

Shou H, Zipunnikov V, Crainiceanu CM, Greven S: Structured functional principal component analysis. Biometrics 71(1):247-57, 2015.

Mejia AF, Nebel MB, Shou H, Crainiceanu CM, Pekar JJ, Mostofsky S, Caffo B, Lindquist MA: Improving reliability of subject-level resting-state fMRI parcellation with shrinkage estimators. Neuroimage 112:14-29, 2015.

Xiao L, Huang L, Schrack JA, Ferrucci L, Zipunnikov V, Crainiceanu CM: Quantifying the lifetime circadian rhythm of physical activity: a covariate-dependent functional approach. Biostatistics 16(2):352-67, 2015.

 

 

Frank Curriero (go to top of document)

 

Tieu HV, Koblin BA, Latkin C, Curriero FC, Greene ER, Rundle A, Frye V: Neighborhood and network characteristics and the HIV care continuum among gay, bisexual, and other men who have sex with men. J Urban Health 97(5):592-608, 2020.

Davis BJK, Corrigan AE, Sun Z, Atherly E, DePaola A, Curriero FC: A case-control analysis of traceback investigations for Vibrio parahaemolyticus infections (vibriosis) and pre-harvest environmental conditions in Washington State, 2013-2018. Sci Total Environ 752:141650, 2020.

Rubenstein WJ, Allahabadi S, Curriero F, Feeley BT, Lansdown DA: Fracture epidemiology in professional baseball from 2011 to 2017. Orthop J Sports Med 8(8):2325967120943161, 2020.

Spaur M, Davis BJK, Kivitz S, DePaola A, Bowers JC, Curriero FC, Nachman KE: A systematic review of post-harvest interventions for Vibrio parahaemolyticus in raw oysters. Sci Total Environ 745:140795, 2020.

Hultman K, Szukics PF, Grzenda A, Curriero FC, Cohen SB: Gastrocnemius injuries in professional baseball players: an epidemiological study. Am J Sports Med 48(10):2489-2498, 2020.

Johnson KA, Jones-Smith J, Curriero FC, Cheskin LJ, Benjamin-Neelon SE, Perin J, Caicedo MR, Thornton RLJ: Low-income black and Hispanic children's neighborhood food environments and weight trajectories in early childhood. Acad Pediatr 20(6):784-792, 2020.

Stojan G, Kvit A, Curriero FC, Petri M: A spatiotemporal analysis of organ-specific lupus flares in relation to atmospheric variables and fine particulate matter pollution. Arthritis Rheumatol 72(7):1134-1142, 2020.

Bhondoekhan FRP, Searle KM, Hamapumbu H, Lubinda M, Matoba J, Musonda M, Katowa B, Shields TM, Kobayashi T, Norris DE, Curriero FC, Stevenson JC, Thuma PE, Moss WJ, Southern and Central Africa International Centers of Excellence for Malaria Research: Improving the efficiency of reactive case detection for malaria elimination in southern Zambia: a cross-sectional study. Malar J 19(1):175, 2020.

Nesoff ED, Milam AJ, Pollack KM, Curriero FC, Bowie JV, Knowlton AR, Gielen AC, Furr-Holden DM: Neighbourhood alcohol environment and injury risk: a spatial analysis of pedestrian injury in Baltimore City. Inj Prev 25(5):350-356, 2019.

Esquivel A, Freehill MT, Curriero FC, Rand KL, Conte S, Tedeschi T, Lemos SE: Analysis of non-game injuries in major league baseball. Orthop J Sports Med 7(12):2325967119888499, 2019.

Flynn A, Davis BJK, Atherly E, Olson G, Bowers JC, DePaola A, Curriero FC: Associations of environmental conditions and Vibrio parahaemolyticus genetic markers in Washington State Pacific oysters. Front Microbiol 10:2797, 2019.

Kvit A, Davis B, Jacobs J, Curriero FC: Adjusted, non-Euclidean cluster detection of Vibrio parahaemolyticus in the Chesapeake Bay, USA. Geospat Health 14(2):10.4081, 2019.

Davis BJK, Curriero FC: Development and evaluation of geostatistical methods for non-Euclidean-based spatial covariance matrices. Math Geosci 51(6):767-791, 2019.

DePriest K, Butz A, Curriero FC, Perrin N, Gross D: Associations among neighborhood greenspace, neighborhood violence, and children's asthma control in an urban city. Ann Allergy Asthma Immunol 123(6):608-610, 2019.

DePriest KN, Shields TM, Curriero FC: Returning to our roots: the use of geospatial data for nurse-led community research. Res Nurs Health 42(6):467-475, 2019.

Klassen AC, Hsieh S, Pankiewicz A, Kabbe A, Hayes J, Curriero F: The association of neighborhood-level social class and tobacco consumption with adverse lung cancer characteristics in Maryland. Tob Induc Dis 17:06, 2019.

Feingold BJ, Augustino KL, Curriero FC, Udani PC, Ramsey KM: Evaluation of methicillin-resistant Staphylococcus aureus carriage and high livestock production areas in North Carolina through active case finding at a tertiary care hospital. Int J Environ Res Public Health 16(18):E3418, 2019.

Davis BJK, Jacobs JM, Zaitchik B, DePaola A, Curriero FC: Vibrio parahaemolyticus in the Chesapeake Bay: Operational in situ prediction and forecast models can benefit from inclusion of lagged water quality measurements. Appl Environ Microbiol 85(17):e01007-19, 2019.

Trangenstein PJ, Curriero FC, Jennings JM, Webster D, Latkin C, Eck RH, Jernigan DH: Methods for evaluating the association between alcohol outlet density and violent crime. Alcohol Clin Exp Res 43(8):1714-1726, 2019.

Jarman MP, Pollack Porter K, Curriero FC, Castillo RC: Factors mediating demographic determinants of injury mortality. Ann Epidemiol 34:58-64, 2019.

Sapkota A, Murtugudde R, Curriero FC, Upperman CR, Ziska L, Jiang C: Associations between alteration in plant phenology and hay fever prevalence among US adults: Implication for changing climate. PLoS One 14(3):e0212010, 2019.

Fakunle DO, Thorpe RJ Jr, Furr-Holden CDM, Curriero FC, Leaf PJ: Does tobacco outlet inequality extend to high-white mid-Atlantic jurisdictions? A study of socioeconomic status and density. J Racial Ethn Health Disparities 6(2):409-418, 2019.

Hansel NN, Romero KM, Pollard SL, Bose S, Psoter KJ, J Underhill L, Johnson C, Williams D, Curriero FC, Breysse P, Koehler K, Checkley W, GASP Study Investigators: Ambient air pollution and variation in multiple domains of asthma morbidity among Peruvian children. Ann Am Thorac Soc 16(3):348-355, 2019.

Berman JD, Jin L, Bell ML, Curriero FC: Developing a geostatistical simulation method to inform the quantity and placement of new monitors for a follow-up air sampling campaign. J Expo Sci Environ Epidemiol 29(2):248-257, 2019.

Majd E, McCormack M, Davis M, Curriero F, Berman J, Connolly F, Leaf P, Rule A, Green T, Clemons-Erby D, Gummerson C, Koehler K: Indoor air quality in inner-city schools and its associations with building characteristics and environmental factors. Environ Res 170:83-91, 2019.

Trangenstein PJ, Curriero FC, Webster D, Jennings JM, Latkin C, Eck R, Jernigan DH: Outlet type, access to alcohol, and violent crime. Alcohol Clin Exp Res 42(11):2234-2245, 2018.

DeLuca NM, Zaitchik BF, Curriero FC: Can multispectral information improve remotely sensed estimates of total suspended solids? A statistical study in Chesapeake Bay. Remote Sens 10(9):1393, 2018.

Jarman MP, Haut ER, Curriero FC, Castillo RC: Mapping areas with concentrated risk of trauma mortality: a first step toward mitigating geographic and socioeconomic disparities in trauma. J Trauma Acute Care Surg 85(1):54-61, 2018.

Jarman MP, Curriero FC, Haut ER, Pollack Porter K, Castillo RC: Associations of distance to trauma care, community income, and neighborhood median age with rates of injury mortality. JAMA Surg 153(6):535-543, 2018.

Berman JD, McCormack MC, Koehler KA, Connolly F, Clemons-Erby D, Davis MF, Gummerson C, Leaf PJ, Jones TD, Curriero FC: School environmental conditions and links to academic performance and absenteeism in urban, mid-Atlantic public schools. Int J Hyg Environ Health 221(5):800-808, 2018.

Nesoff ED, Milam AJ, Pollack KM, Curriero FC, Bowie JV, Gielen AC, Furr-Holden DM: Novel methods for environmental assessment of pedestrian injury: creation and validation of the inventory for pedestrian safety infrastructure. J Urban Health 95(2):208-221, 2018.

Bose S, Romero K, Psoter KJ, Curriero FC, Chen C, Johnson CM, Kaji D, Breysse PN, Williams DL, Ramanathan M, Checkley W, Hansel NN: Association of traffic air pollution and rhinitis quality of life in Peruvian children with asthma. PLoS One 13(3):e0193910, 2018.

Soneja SI, Tielsch JM, Khatry SK, Zaitchik B, Curriero FC, Breysse PN: Characterizing particulate matter exfiltration estimates for alternative cookstoves in a village-like household in rural Nepal. Environ Manage 60(5):797-808, 2017.

Camp CL, Curriero FC, Pollack KM, Mayer SW, Spiker AM, D'Angelo J, Coleman SH: The epidemiology and effect of sliding injuries in major and minor league baseball players. Am J Sports Med 45(10):2372-2378, 2017.

Ciccotti MG, Pollack KM, Ciccotti MC, D'Angelo J, Ahmad CS, Altchek D, Andrews J, Curriero FC: Elbow injuries in professional baseball: epidemiological findings from the major league baseball injury surveillance system. Am J Sports Med 45(10):2319-2328, 2017.

Cely-Garcia MF, Curriero FC, Sanchez-Silva M, Breysse PN, Giraldo M, Mendez L, Torres-Duque C, Duran M, Gonzalez-Garcia M, Parada P, Ramos-Bonilla JP: Estimation of personal exposure to asbestos of brake repair workers. J Expo Sci Environ Epidemiol 27(4):417-426, 2017.

Wong MS, Peyton JM, Shields TM, Curriero FC, Gudzune KA: Comparing the accuracy of food outlet datasets in an urban environment. Geospat Health 12(1):546, 2017.

Searle KM, Lubinda J, Hamapumbu H, Shields TM, Curriero FC, et al: Characterizing and quantifying human movement patterns using GPS data loggers in an area approaching malaria elimination in rural southern Zambia. R Soc Open Sci 4(5):1-12, 2017.

Upperman CR, Parker JD, Akinbami LJ, Jiang C, He X, Murtugudde R, Curriero FC, Ziska L, Sapkota A: Exposure to extreme heat events is associated with increased hay fever prevalence among nationally representative sample of US adults: 1997-2013. J Allergy Clin Immunol Pract 5(2):435-441.e2, 2017.

Cely-Garcia MF, Curriero FC, Giraldo M, Mendez L, Breysse PN, Duran M, Torres-Duque CA, Gonzalez-Garcia M, Perez C, Parada P, Ramos-Bonilla JP: Factors associated with non-compliance of asbestos occupational standards in brake repair workers. Ann Occup Hyg 60(8):1020-35, 2016.

Stevenson JC, Pinchoff J, Muleba M, Lupiya J, Chilusu H, Mwelwa I, Mbewe D, Simubali L, Jones CM, Chaponda M, Coetzee M, Mulenga M, Pringle JC, Shields T, Curriero FC, Norris DE, Southern Africa International Centers of Excellence in Malaria Research: Spatio-temporal heterogeneity of malaria vectors in northern Zambia: implications for vector control. Parasit Vectors 9(1):510, 2016.

Kanyangarara M, Mamini E, Mharakurwa S, Munyati S, Gwanzura L, Kobayashi T, Shields T, Mullany LC, Mutambu S, Mason PR, Curriero FC, Moss WJ, Southern Africa International Centers of Excellence for Malaria Research: Individual- and household-level risk factors associated with malaria in Mutasa District, Zimbabwe: a serial cross-sectional study. Am J Trop Med Hyg 95(1):133-40, 2016.

Kanyangarara M, Mamini E, Mharakurwa S, Munyati S, Gwanzura L, Kobayashi T, Shields T, Mullany LC, Mutambu S, Mason PR, Curriero FC, Moss WJ, Southern Africa International Centers of Excellence for Malaria Research: High-resolution plasmodium falciparum malaria risk mapping in Mutasa District, Zimbabwe: Implications for regaining control. Am J Trop Med Hyg 95(1):141-7, 2016.

Chen C, Zeger S, Breysse P, Katz J, Checkley W, Curriero FC, Tielsch JM: Estimating indoor PM2.5 and CO concentrations in households in southern Nepal: The Nepal Cookstove Intervention Trials. PLoS One 11(7):e0157984, 2016.

Pinchoff J, Chaponda M, Shields TM, Sichivula J, Muleba M, Mulenga M, Kobayashi T, Curriero FC, Moss WJ, Southern Africa International Centers of Excellence for Malaria Research: Individual and household level risk factors associated with malaria in Nchelenge District, a region with perennial transmission: a serial cross-sectional study from 2012 to 2015. PLoS One 11(6):e0156717, 2016.

Shields T, Pinchoff J, Lubinda J, Hamapumbu H, Searle K, Kobayashi T, Thuma PE, Moss WJ, Curriero FC: Spatial and temporal changes in household structure locations using high-resolution satellite imagery for population assessment: an analysis in southern Zambia, 2006-2011. Geospat Health 11(2):410, 2016.

Kanyangarara M, Mamini E, Mharakurwa S, Munyati S, Gwanzura L, Kobayashi T, Shields T, Mullany LC, Mutambu S, Mason PR, Curriero FC, Moss WJ, Southern Africa International Centers of Excellence for Malaria Research: Reduction in malaria incidence following indoor residual spraying with Actellic 300 CS in a setting with pyrethroid resistance: Mutasa District, Zimbabwe. PLoS One 11(3):e0151971, 2016.

Dahm DL, Curriero FC, Camp CL, Brophy RH, Leo T, Meister K, Paletta GA, Steubs JA, Mandelbaum BR, Pollack KM: Epidemiology and impact of knee injuries in major and minor league baseball players. Am J Orthop 45(3):E54-62, 2016.

Coleman SH, Mayer SW, Tyson JJ, Pollack KM, Curriero FC: The epidemiology of hip and groin injuries in professional baseball players. Am J Orthop 45(3):168-75, 2016.

Tobin KE, Yang C, King K, Latkin CA, Curriero FC: Associations between drug and alcohol use patterns and sexual risk in a sample of African American men who have sex with men. AIDS Behav 20(3):590-9, 2016.

Soneja SI, Tielsch JM, Khatry SK, Curriero FC, Breysse PN: Highlighting uncertainty and recommendations for improvement of black carbon biomass fuel-based emission inventories in the Indo-Gangetic Plain region. Curr Environ Health Rep 3(1):73-80, 2016.

Pollack KM, D'Angelo J, Green G, Conte S, Fealy S, Marinak C, McFarland E, Curriero FC: Developing and implementing major league baseball's health and injury tracking system. Am J Epidemiol 183(5):490-6, 2016.

Rebeiro PF, Gange SJ, Horberg MA, Abraham AG, Napravnik S, Samji H, Yehia BR, Althoff KN, Moore RD, Kitahata MM, Sterling TR, Curriero FC, North American AIDS Cohort Collaboration on Research and Design (NA-ACCORD): Geographic variations in retention in care among HIV-infected adults in the United States. PLoS One 11(1):e0146119, 2016.

Pinchoff J, Chaponda M, Shields T, Lupiya J, Kobayashi T, Mulenga M, Moss WJ, Curriero FC, Southern Africa International Centers of Excellence for Malaria Research: Predictive malaria risk and uncertainty mapping in Nchelenge District, Zambia: Evidence of widespread, persistent risk and implications for targeted interventions. Am J Trop Med Hyg 93(6):1260-7, 2015.

Berman JD, Breysse PN, White RH, Waugh DW, Curriero FC: Evaluating methods for spatial mapping: applications for estimating ozone concentrations across the contiguous United States. Environmental Technology & Innovation 3:1-10, 2015.

Murphy R, Perlman E, Ball W, Curriero FC: Water-distance-based kriging in Chesapeake Bay. J Hydrol Eng 20(9):05014034, 2015.

Pinchoff J, Henostroza G, Carter BS, Roberts ST, Hatwiinda S, Hamainza B, Hawela M, Curriero FC: Spatial patterns of incident malaria cases and their household contacts in a single clinic catchment area of Chongwe District, Zambia. Malar J 14(1):305, 2015.

Hsieh S, Klassen AC, Curriero FC, Caulfield LE, Cheskin LJ, Davis JN, Goran MI, Weigensberg MJ, Spruijt-Metz D: Built environment associations with adiposity parameters among overweight and obese Hispanic youth. Prev Med Rep 2:406-412, 2015.

Soneja SI, Tielsch JM, Curriero FC, Zaitchik B, Khatry SK, Yan B, Chillrud SN, Breysse PN: Determining particulate matter and black carbon exfiltration estimates for traditional cookstove use in rural Nepalese village households. Environ Sci Technol 49(9):5555-62, 2015.

Green GA, Pollack KM, D'Angelo J, Schickendantz MS, Caplinger R, Weber K, Valadka A, McAllister TW, Dick RW, Mandelbaum B, Curriero FC: Mild traumatic brain injury in major and minor league baseball players. Am J Sports Med 43(5):1118-26, 2015.

Klassen AC, Pankiewicz A, Hsieh S, Ward A, Curriero FC: The association of area-level social class and tobacco use with adverse breast cancer characteristics among white and black women: evidence from Maryland, 1992-2003. Int J Health Geogr 14(1):13, 2015.

Pinchoff J, Chipeta J, Banda GC, Miti S, Shields T, Curriero F, Moss WJ: Spatial clustering of measles cases during endemic (1998-2002) and epidemic (2010) periods in Lusaka, Zambia. BMC Infect Dis 15(1):121, 2015.

 

 

Abhirup Datta   (go to top of document)

 

Datta A, Pita A, Rao A, Sithole B, Mnisi Z, Baral S: Size estimation of key populations in the HIV epidemic in eSwatini using incomplete and misaligned capture-recapture data. Ann Appl Stat 14(3):1207-1241, 2020.

Datta A, Saha A, Zamora ML, Buehler C, Hao L, Xiong F, Gentner DR, Koehler K: Statistical field calibration of a low-cost PM 2.5 monitoring network in Baltimore. Atmos Environ 242:117761, 2020.

Datta A. Banerjee S, Hodges JS, Gao L: Spatial disease mapping using Directed Acyclic Graph Auto-Regressive (DAGAR) models. Bayesian Anal 14(4):1221-1244, 2019.

Heaton MJ, Datta A, Finley AO, Furrer R, Guinness J, Guhaniyogi R, Gerber F, Gramacy RB, Hammerling D, Katzfuss M, Lindgren F, Nychka DW, Sun F, Zammit-Mangion: A case study competition among methods for analyzing large spatial data. J Agric Biol Environ Stat 24(3):398-425, 2019.

Finley AO, Datta A, Cook BD, Morton DC, Andersen HE, Banerjee S: Efficient algorithms for Bayesian nearest neighbor Gaussian processes. J Comp Graph Stat 28(2):401-414, 2019.

Datta A, Lin W, Rao A, Diouf D, Kouame A, Edwards JK, Bao L, Louis TA, Baral S: Bayesian estimation of MSM population size in Cote d'Ivoire. Stat Public Policy 6(1):1-13, 2019.

Datta A, Zou H, Banerjee S: Bayesian high-dimensional regression for change point analysis. Statistics and Its Interface 12(2):253-264, 2019.

Datta A, Lin W, Rao A, Diouf D, Kouame A, Edwards JF, Bao L, Louis TA, Baral A: Bayesian estimation of MSM population size in Cote d'Ivoire. Statistics and Public Policy 6(1):1-13, 2019.

Edwards JK, Hileman S, Donastorg Y, Zadrozny S, Baral S, Hargreaves JR, Fearon E, Zhao J, Datta A, Weir SS: Estimating sizes of key populations at the national level: considerations for study design and analysis. Epidemiology 29(6):795-803, 2018.

Saha A, Datta A: BRISC: bootstrap for rapid inference on spatial covariances. Stat 7(1):e184, 2018.

Butler EE, Datta A, Flores-Moreno H, et al: Mapping local and global variability in plant trait distributions. Proc Natl Acad Sci U S A 114(51):E10937-E10946, 2017.

Datta A, Zou H: CoCoLasso for high-dimensional error-in-variables regression. Ann Stat 45(6):2400-2426, 2017.

Datta A, Banerjee S, Finley AO, Gelfand AE: On nearestneighbor Gaussian process models for massive spatial data. WIREs Comp Stat 8(5):162-171, 2016.

Datta A, Banerjee S, Finley AO, Hamm NAS, Schaap M: Nonseparable dynamic nearest neighbor Gaussian process models for large spatio-temporal data with an application to particulate matter analysis. Ann Appl Stat 10(3):1286-1316, 2016.

Datta A, Banerjee S, Finley AO, Gelfand AE: Hierarchical nearest-neighbor Gaussian process models for large geostatistical datasets. JASA 111(514):800-812, 2016.

 

 

Marie Diener-West   (go to top of document)

 

McAdams-DeMarco MA, Chu NM, Steckel M, Kunwar S, Gonzalez Fernandez M, Carlson MC, Fine DM, Appel LJ, Diener-West M, Segev DL: Interventions Made to Preserve Cognitive Function Trial (IMPCT) study protocol: a multi-dialysis center 2x2 factorial randomized controlled trial of intradialytic cognitive and exercise training to preserve cognitive function. BMC Nephrol 21(1):383, 2020.

Zia N, Loeb M, Kajungu D, Galiwango E, Diener-West M, Wegener S, Pariyo G, Hyder AA, Bachani AM: Adaptation and validation of UNICEF/Washington group child functioning module at the Iganga-Mayuge health and demographic surveillance site in Uganda. BMC Public Health 20(1):1334, 2020.

Dezube R, Jennings MT, Rykiel M, Diener-West M, Boyle MP, Chmiel JF, Dasenbrook EC: Eradication of persistent methicillin-resistant Staphylococcus aureus infection in cystic fibrosis. J Cyst Fibros 18(3):357-363, 2019.

Kubiak RW, Zelnick LR, Hoofnagle AN, Alpers CE, Terry CM, Shiu YT, Cheung AK, de Boer IH, Robinson-Cohen C, Allon M, Dember LM, Feldman HI, Himmelfarb J, Huber TS, Roy-Chaudhury P, Vazquez MA, Kusek JW, Beck GJ, Imrey PB, Kestenbaum B, Hemodialysis Fistula Maturation Study Group (includes Diener-West M): Mineral metabolism disturbances and arteriovenous fistula maturation. Eur J Vasc Endovasc Surg 57(5):719-728, 2019.

Varadaraj V, Ranjit A, Nwadiuko J, Canner J, Diener-West M, Schneider EB, Thyagarajan SP, Shrestha R, Nagarajan N: Towards diaspora-driven research capacity strengthening in low- and middle-income countries: results from India and Nepal. Int Health 11(3):221-228, 2019.

Resnick BA, Morlock L, Diener-West M, Stuart EA, Spencer M, Sharfstein JM: PH WINS and the future of public health education. J Public Health Manag Pract 25(Suppl 2):S10-S12, 2019.

Nelson CS, Vera Cruz D, Su M, Xie G, Vandergrift N, Pass RF, Forman M, Diener-West M, Koelle K, Arav-Boger R, Permar SR: Intrahost dynamics of human cytomegalovirus variants acquired by seronegative glycoprotein B vaccinees. J Virol 93(5):e01695-18, 2019.

Robbin ML, Greene T, Allon M, Dember LM, Imrey PB, Cheung AK, Himmelfarb J, Huber TS, Kaufman JS, Radeva MK, Roy-Chaudhury P, Shiu YT, Vazquez MA, Umphrey HR, Alexander L, Abts C, Beck GJ, Kusek JW, Feldman HI, Hemodialysis Fistula Maturation Study Group (includes Diener-West M): Prediction of arteriovenous fistula clinical maturation from postoperative ultrasound measurements: findings from the Hemodialysis Fistula Maturation Study. J Am Soc Nephrol 29(11):2735-2744, 2018.

Straatsma BR, Diener-West M, Caldwell R, Engstrom RE, Collaborative Ocular Melanoma Study Group: Mortality after deferral of treatment or no treatment for choroidal melanoma. Indian J Ophthalmol 66(10):1395-1400, 2018.

Duval-Arnould JM, Newton HM, McNamara L, Engorn BM, Jones K, Bernier M, Dodge P, Salamone C, Bhalala U, Jeffers JM, Engineer L, Diener-West M, Hunt EA: Design and deployment of a pediatric cardiac arrest surveillance system. Crit Care Res Pract 2018:9187962, 2018.

Wang W, Alonso A, Soliman EZ, O'Neal WT, Calkins H, Chen LY, Diener-West M, Szklo M: Relation of resting heart rate to incident atrial fibrillation (from ARIC [Atherosclerosis Risk in Communities] Study). Am J Cardiol 121(10):1169-1176, 2018.

Allon M, Imrey PB, Cheung AK, Radeva M, Alpers CE, Beck GJ, Dember LM, Farber A, Greene T, Himmelfarb J, Huber TS, Kaufman JS, Kusek JW, Roy-Chaudhury P, Robbin ML, Vazquez MA, Feldman HI, Hemodialysis Fistula Maturation (HFM) Study Group (includes Diener-West M): Relationships between clinical processes and arteriovenous fistula cannulation and maturation: a multicenter prospective cohort study. Am J Kidney Dis 71(5):677-689, 2018.

Berhanu D, Diener-West M, Ruff A, Davis WW, Celentano DD, Go VF: Associations between khat use and HIV risk and status among voluntary counseling and testing center clients in Addis Ababa, Ethiopia. J Addict Med 11(4):320-327, 2017.

Forman MS, Vaidya D, Bolorunduro O, Diener-West M, Pass RF, Arav-Boger R: Cytomegalovirus kinetics following primary infection in healthy women. J Infect Dis 215(10):1523-1526, 2017.

Grover S, Nurkic S, Diener-West M, Showalter SL: Survival after breast-conserving surgery with whole breast or partial breast irradiation in women with early stage breast cancer: a SEER data-base analysis. Breast J 23(3):292-298, 2017.

Smart BJ, Haring RS, Zogg CK, Diener-West M, Schneider EB, Haider AH, Haut ER: A faculty-student mentoring program to enhance collaboration in public health research in surgery. JAMA Surg 152(3):306-308, 2017.

Moradi A, Kanagalingam S, Diener-West M, Miller NR: Post-cataract surgery optic neuropathy: prevalence, incidence, temporal relationship, and fellow eye involvement. Am J Ophthalmol 175:183-193, 2017.

Hanley DF, Lane K, McBee N..., Diener-West M, Muschelli J, Betz JF, Thompson CB, Sugar EA, Yenokyan G, ..., Rosenblum M, Thompson RE, et al: Thrombolytic removal of intraventricular haemorrhage in treatment of severe stroke: results of the randomised, multicentre, multiregion, placebo-controlled CLEAR III trial. Lancet 389(10069):603-611, 2017.

Bediako SM, Lanzkron S, Diener-West M, Onojobi G, Beach MC, Haywood C Jr.: The measure of sickle cell stigma: Initial findings from the Improving Patient Outcomes through Respect and Trust Study. J Health Psychol 21(5):808-20, 2016.

Zeitlin PL, Diener-West M, Callahan KA, Lee S, Talbot CC Jr, Pollard B, Boyle MP, Lechtzin N: Digitoxin for airway inflammation in cystic fibrosis: preliminary assessment of safety, pharmacokinetics, and dose finding. Ann Am Thorac Soc 14(2):220-229, 2017.

Dember LM, Imrey PB, Duess MA, Hamburg NM, Larive B, Radeva M, Himmelfarb J, Kraiss LW, Kusek JW, Roy-Chaudhury P, Terry CM, Vazquez MA, Vongpatanasin W, Beck GJ, Vita JA, Hemodialysis Fistula Maturation Study (includes Diener-West M): Vascular function at baseline in the Hemodialysis Fistula Maturation Study. J Am Heart Assoc 5(7). pii: e003227, 2016.

Robbin ML, Greene T, Cheung AK, Allon M, Berceli SA, Kaufman JS, Allen M, Imrey PB, Radeva MK, Shiu YT, Umphrey HR, Young CJ, Hemodialysis Fistula Maturation Study Group (includes Diener-West M): Arteriovenous fistula development in the first 6 weeks after creation. Radiology 279(2):620-9, 2016.

Jonassaint CR, Beach MC, Haythornthwaite JA, Bediako SM, Diener-West M, Strouse JJ, Lanzkron S, Onojobi G, Carroll CP, Haywood C Jr: The association between educational attainment and patterns of emergency department utilization among adults with sickle cell disease. Int J Behav Med 23(3):300-9, 2016.

Devonshire AL, Hager ER, Black MM, Diener-West M, Tilton N, Snitker S: Elevated blood pressure in adolescent girls: correlation to body size and composition. BMC Public Health 16(1):78, 2016.

Farber A, Imrey PB, Huber TS, Kaufman JM, Kraiss LW, Larive B, Li L, Feldman HI, HFM Study Group (includes Diener-West M): Multiple preoperative and intraoperative factors predict early fistula thrombosis in the Hemodialysis Fistula Maturation Study. J Vasc Surg 63(1):163-170, 2016.

Farber A, Tan TW, Hu B, Dember LM, Beck GJ, Dixon BS, Kusek JW, Feldman HI, Dialysis Access Consortium (DAC) Study Group, Dialysis Access Consortium DAC Study Group (includes Diener-West M): The effect of location and configuration on forearm and upper arm hemodialysis arteriovenous grafts. J Vasc Surg 62(5):1258-65, 2015.

Degnan LA, Milstone AM, Diener-West M, Lee CK: Extended-spectrum beta-lactamase bacteria from urine isolates in children. J Pediatr Pharmacol Ther 20(5):373-7, 2015.

Fowler SL, Platz EA, Diener-West M, Hokenmaier S, Truss M, Lewis C, Kanarek NF: Comparing the Maryland Comprehensive Cancer Control Plan with federal cancer prevention and control recommendations. Prev Chronic Dis 12:E163, 2015.

Wallace DK, Lazar EL, Crouch ER 3rd, Hoover DL, Kraker RT, Tamkins SM, Pediatric Eye Disease Investigator Group (includes Diener-West M): Time course and predictors of amblyopia improvement with 2 hours of daily patching. JAMA Ophthalmol 133(5):606-9, 2015.

Prasad V, Diener-West M: Primary chemoprevention of breast cancer: Are the adverse effects too burdensome? CMAJ 187(9):E276-8, 2015.

Pediatric Eye Disease Investigator Group (includes Diener-West M), Wallace DK, Lazar EL, Repka MX, Holmes JM, Kraker RT, Hoover DL, Weise KK, Waters AL, Rice ML, Peters RJ: A randomized trial of adding a plano lens to atropine for amblyopia. J AAPOS 19(1):42-8, 2015.

Oh J, Sotirchos ES, Saidha S, Whetstone A, Chen M, Newsome SD, Zackowski K, Balcer LJ, Frohman E, Prince J, Diener-West M, Reich DS, Calabresi PA: Relationships between quantitative spinal cord MRI and retinal layers in multiple sclerosis. Neurology 84(7):720-8, 2015.

 

 

Constantine Frangakis    (go to top of document)

 

Hershow RB, Reyes HLM, Ha TV, Chander G, Mai NVT, Sripaipan T, Frangakis C, Dowdy DW, Latkin C, Hutton HE, Pettifor A, Maman S, Go VF: Alcohol use, depressive symptoms, and intimate partner violence perpetration: a longitudinal analysis among men with HIV in northern Vietnam. PLoS One 15(10):e0240674, 2020.

Lancaster KE, Hetrick A, Sripaipan T, Ha TV, Hutton HE, Chander G, Latkin CA, Dowdy D, Frangakis C, Quynh BX, Go VF: Alcohol abstinence stigma and alcohol use among HIV patients in Thai Nguyen, Vietnam. PLoS One 15(9):e0239330, 2020.

Nguyen MX, Dowdy D, Latkin CA, Hutton HE, Chander G, Frangakis C, Lancaster KE, Sripaipan T, Bui QX, Tran HV, Go VF: Social support modifies the association between hazardous drinking and depression symptoms among ART clients in Vietnam. Drug Alcohol Depend 215:108249, 2020.

Go VF, Hutton HE, Ha TV, Chander G, Latkin CA, Mai NVT, Quynh BX, Nguyen V, Sripaipan T, Lancaster KE, Blackburn N, Hershow RB, Dowdy DW, Frangakis C: Effect of 2 integrated interventions on alcohol abstinence and viral suppression among Vietnamese adults with hazardous alcohol use and HIV: a randomized clinical trial. JAMA Netw Open 3(9):e2017115, 2020.

Blackburn NA, Go VF, Bui Q, Hutton H, Tampi RP, Sripaipan T, Ha TV, Latkin C, Golden S, Golin C, Chander G, Frangakis C, Gottfredson N, Dowdy DW: Implementation of two alcohol reduction interventions among persons with hazardous alcohol use who are living with HIV in Thai Nguyen, Vietnam: a micro-costing analysis. Glob Health Action 13(1):1814035, 2020.

Hershow RB, Ha TV, Sripaipan T, Latkin C, Hutton HE, Chander G, Bui Q, Nguyen VQ, Frangakis C, Go VF: Perpetration of intimate partner violence among men living with HIV in northern Vietnam. AIDS Behav 24(9):2555-2571, 2020.

Morkos J, Porosnicu Rodriguez KA, Zhou A, Kolarich AR, Frangakis C, Rodriguez R, Georgiades CS: Percutaneous cryoablation for Stage 1 renal cell carcinoma: outcomes from a 10-year prospective study and comparison with matched cohorts from the National Cancer Database. Radiology 296(2):452-459, 2020.

de Aguiar V, Zhao Y, Faria A, Ficek B, Webster KT, Wendt H, Wang Z, Hillis AE, Onyike CU, Frangakis C, Caffo B, Tsapkini K: Brain volumes as predictors of tDCS effects in primary progressive aphasia. Brain Lang 200:104707, 2020.

Werner JD, Frangakis C, Ruck JM, Hong K, Philosophe B, Cameron AM, Saberi B, Gurakar A, Georgiades C: Neoadjuvant transarterial chemoembolization improves survival after liver transplant in patients with hepatocellular carcinoma. Exp Clin Transplant 17(5):638-643, 2019.

de Aguiar V, Zhao Y, Ficek BN, Webster K, Rofes A, Wendt H, Frangakis C, Caffo B, Hillis AE, Rapp B, Tsapkini K: Cognitive and language performance predicts effects of spelling intervention and tDCS in Primary Progressive Aphasia. Cortex 124:66-84, 2019.

Ehrhardt S, Porsteinsson AP, Munro CA, Rosenberg PB, Pollock BG, Devanand DP, Mintzer J, Rajji TK, Ismail Z, Schneider LS, Baksh SN, Drye LT, Avramopoulos D, Shade DM, Lyketsos CG, S-CitAD Research Group (includes Frangakis C): Escitalopram for agitation in Alzheimer's disease (S-CitAD): Methods and design of an investigator-initiated, randomized, controlled, multicenter clinical trial. Alzheimers Dement 15(11):1427-1436, 2019.

Fenner AS, Webster KT, Ficek BN, Frangakis CE, Tsapkini K: Written verb naming improves after tDCS over the left IFG in primary progressive aphasia. Front Psychol 10:1396, 2019.

Chockalingam L, Pence B, Frangakis CE, Ha TV, Latkin CA, Sripaipan T, Quan VM, Go VF: The relationship between health-related variables and increases in smoking among recently diagnosed HIV+ people who inject drugs in Vietnam. Addict Behav 95:118-124, 2019.

Levintow SN, Pence BW, Ha TV, Le Minh N, Sripaipan T, Latkin CA, Vu PT, Quan VM, Frangakis C, Go VF: Depressive symptoms at HIV testing and two-year all-cause mortality among men who inject drugs in Vietnam. AIDS Behav 23(3):609-616, 2019.

Riello M, Faria AV, Ficek B, Webster K, Onyike CU, Desmond J, Frangakis C, Tsapkini K: The role of language severity and education in explaining performance on object and action naming in primary progressive aphasia. Front Aging Neurosci 10:346, 2018.

Tsapkini K, Webster KT, Ficek BN, Desmond JE, Onyike CU, Rapp B, Frangakis CE, Hillis AE: Electrical brain stimulation in different variants of primary progressive aphasia: A randomized clinical trial. Alzheimers Dement 4:461-472, 2018.

Ficek BN, Wang Z, Zhao Y, Webster KT, Desmond JE, Hillis AE, Frangakis C, Vasconcellos Faria A, Caffo B, Tsapkini K: The effect of tDCS on functional connectivity in primary progressive aphasia. Neuroimage Clin 19:703-715, 2018.

Werner JD, Tregnago AC, Netto GJ, Frangakis C, Georgiades CS: Single 15-min protocol yields the same cryoablation size and margin as the conventional 10-8-10-min protocol: results of kidney and liver swine experiment. Cardiovasc Intervent Radiol 41(7):1089-1094, 2018.

Brock M, Frangakis C, Georgiades CS: CT-guided, percutaneous ethanol sympatholysis for primary hyperhidrosis. Cardiovasc Intervent Radiol 41(3):477-482, 2018.

Levintow SN, Pence BW, Ha TV, Minh NL, Sripaipan T, Latkin CA, Vu PT, Quan VM, Frangakis C, Go VF: Prevalence and predictors of depressive symptoms among HIV-positive men who inject drugs in Vietnam. PLoS One 13(1):e0191548, 2018.

Blackburn NA, Lancaster KE, Ha TV, Latkin CA, Miller WC, Frangakis C, Chu VA, Sripaipan T, Quan VM, Minh NL, Vu PT, Go VF: Characteristics of persons who inject drugs and who witness opioid overdoses in Vietnam: a cross-sectional analysis to inform future overdose prevention programs. Harm Reduct J 14(1):62, 2017.

Charu V, Rosenberg PB, Schneider LS, Drye LT, Rein L, Shade D, Lyketsos CG, Frangakis CE: Characterizing highly benefited patients in randomized clinical trials. Int J Biostat 13(1):art. no. 20160045, 2017.

Sohn JH, Duran R, Zhao Y, Fleckenstein F, Chapiro J, Sahu S, Schernthaner RE, Qian T, Lee H, Zhao L, Hamilton J, Frangakis C, Lin M, Salem R, Geschwind JF: Validation of the Hong Kong Liver Cancer staging system in determining prognosis of the North American patients following intra-arterial therapy. Clin Gastroenterol Hepatol 15(5):746-755, 2017.

Duran R, Mirpour S, Pekurovsky V, Ganapathy-Kanniappan S, Brayton CF, Cornish TC, Gorodetski B, Reyes J, Chapiro J, Schernthaner RE, Frangakis C, Lin M, Sun JD, Hart CP, Geschwind JF: Preclinical benefit of hypoxia-activated intra-arterial therapy with evofosfamide in liver cancer. Clin Cancer Res 23(2):536-548, 2017.

Go VF, Frangakis C, Le Minh N, Ha TV, Latkin CA, Sripaipan T, Zelaya CE, Davis WW, Celentano DD, Quan VM: Increased survival among HIV-infected PWID receiving a multi-level HIV risk and stigma reduction intervention: results from a randomized controlled trial. J Acquir Immune Defic Syndr 74(2):166-174, 2017.

Narayan A, Hong K, Streiff M, Shinohara R, Frangakis C, Coresh J, Kim HS: The impact of cancer on the clinical outcome of patients after inferior vena cava filter placement: a retrospective cohort study. Am J Clin Oncol 39(3):294-301, 2016.

Kakarala B, Frangakis CE, Rodriguez R, Georgiades CS: Hemorrhagic complications of percutaneous cryoablation for renal tumors: results from a 7-year prospective study. Cardiovasc Intervent Radiol 39(11):1604-1610, 2016.

Zelaya CE, Le Minh N, Lau B, Latkin CA, Viet Ha T, Minh Quan V, Mo TT, Sripaipan T, Davis WW, Celentano DD, Frangakis C, Go VF: The effect of a multi-level intervention on the initiation of antiretroviral therapy (ART) among HIV-infected men who inject drugs and were diagnosed late in Thai Nguyen, Vietnam. PLoS One 11(8):e0161718, 2016.

Leonpacher AK, Peters ME, Drye LT, Makino KM, Newell JA, Devanand DP, Frangakis C, Munro CA, Mintzer JE, Pollock BG, Rosenberg PB, Schneider LS, Shade DM, Weintraub D, Yesavage J, Lyketsos CG, Porsteinsson AP, CitAD Research Group: Effects of citalopram on neuropsychiatric symptoms in Alzheimer's dementia: evidence from the CitAD Study. Am J Psychiatry 173(5):473-80, 2016.

Schneider LS, Frangakis C, Drye LT, Devanand DP, Marano CM, Mintzer J, Mulsant BH, Munro CA, Newell JA, Pawluczyk S, Pelton G, Pollock BG, Porsteinsson AP, Rabins PV, Rein L, Rosenberg PB, Shade D, Weintraub D, Yesavage J, Lyketsos CG, CitAD Research Group: Heterogeneity of treatment response to citalopram for patients with Alzheimer's disease with aggression or agitation: the CitAD Randomized Clinical Trial. Am J Psychiatry 173(5):465-72, 2016.

Go VF, Latkin C, Le Minh N, Frangakis C, Ha TV, Sripaipan T, Mo TT, Davis WW, Vu PT, Quan VM: Variations in the role of social support on disclosure among newly diagnosed HIV-infected people who inject drugs in Vietnam. AIDS Behav 20(1):155-64, 2016.

Tacher V, Lin M, Duran R, Yarmohammadi H, Lee H, Chapiro J, Chao M, Wang Z, Frangakis C, Sohn JH, Maltenfort MG, Pawlik T, Geschwind JF: Comparison of existing response criteria in patients with hepatocellular carcinoma treated with transarterial chemoembolization using a 3D quantitative approach. Radiology 278(1):275-84, 2016.

Frangakis CE, Qian T, Wu Z, Diaz I: Deductive derivation and turing-computerization of semiparametric efficient estimation. Biometrics 71(4):867-74, 2015.

Weintraub D, Drye LT, Porsteinsson AP, Rosenberg PB, Pollock BG, Devanand DP, Frangakis C, Ismail Z, Marano C, Meinert CL, Mintzer JE, Munro CA, Pelton G, Rabins PV, Schneider LS, Shade DM, Yesavage J, Lyketsos CG, CitAD Research Group: Time to response to citalopram treatment for agitation in Alzheimer disease. Am J Geriatr Psychiatry 23(11):1127-33, 2015.

Rosenberg PB, Drye LT, Porsteinsson AP, Pollock BG, Devanand DP, Frangakis C, Ismail Z, Marano C, Meinert CL, Mintzer JE, Munro CA, Pelton G, Rabins PV, Schneider LS, Shade DM, Weintraub D, Newell J, Yesavage J, Lyketsos CG, CitAD Research Group: Change in agitation in Alzheimer's disease in the placebo arm of a nine-week controlled trial. Int Psychogeriatr 27(12):2059-67, 2015.

Daniels M, Frangakis C, Charu V, Ghosh D: University of Pennsylvania 7th annual conference on statistical issues in clinical trials: Current issues regarding the use of biomarkers and surrogate endpoints in clinical trials (morning panel discussion). Clin Trials 12(4):323-32, 2015.

Go VF, Frangakis C, Minh NL, Latkin C, Ha TV, Mo TT, Sripaipan T, Davis WW, Zelaya C, Vu PT, Celentano DD, Quan VM: Efficacy of a multi-level intervention to reduce injecting and sexual risk behaviors among HIV-infected people Who inject drugs in Vietnam: a four-arm randomized controlled trial. PLoS One 10(5):e0125909, 2015.

Zhang L, Celentano DD, Le Minh N, Latkin CA, Mehta SH, Frangakis C, Ha TV, Mo TT, Sripaipan T, Davis WW, Quan VM, Go VF: Prevalence and correlates of HCV monoinfection and HIV and HCV coinfection among persons who inject drugs in Vietnam. Eur J Gastroenterol Hepatol 27(5):550-556, 2015.

 

 

Adrian Gherman   (go to top of document)

 

Carass A, Roy S, Gherman A, Reinhold JC, Jesson A, Arbel T, Maier O, Handels H, Ghafoorian M, Platel B, Birenbaum A, Greenspan H, Pham DL, Crainiceanu CM, Calabresi PA, Prince JL, Roncal WRG, Shinohara RT, Oguz I: Evaluating white matter lesion segmentations with refined Sorensen-Dice analysis. Sci Rep 10(1):8242, 2020.

Muschelli J, Gherman A, Fortin JP, Avants B, Whitcher B, Clayden JD, Caffo BS, Crainiceanu CM: Neuroconductor: an R platform for medical imaging analysis. Biostatistics 20(2):218-239, 2019.

Carass A, Roy S, Jog A, Cuzzocreo JL, Magrath E, Gherman A, Button J, Nguyen J, Bazin PL, Calabresi PA, Crainiceanu CM, Ellingsen LM, Reich DS, Prince JL, Pham DL: Longitudinal multiple sclerosis lesion segmentation data resource. Data Brief 12:346-350, 2017.

Carass A, Roy S, Jog A, Cuzzocreo JL, Magrath E, Gherman A, ..., Crainiceanu CM, et al: Longitudinal multiple sclerosis lesion segmentation: Resource and challenge. Neuroimage 148:77-102, 2017.

 

 

Andre Hackman   (go to top of document)

 

OʼToole RV, Joshi M, Carlini AR, Sikorski RA, Dagal A, Murray CK, Weaver MJ, Paryavi E, Stall AC, Scharfstein DO, Agel J, Zadnik M, Bosse MJ, Castillo RC, METRC (includes Hackman A): Supplemental perioperative oxygen to reduce surgical site infection after high-energy fracture surgery (OXYGEN Study). J Orthop Trauma 31(Suppl 1):S25-S31, 2017.

 

 

Kasper Hansen   (go to top of document)

 

Rajagopalan S, Park B, Palanivel R, Vinayachandran V, Deiuliis JA, Gangwar RS, Das L, Yin J, Choi Y, Al-Kindi S, Jain MK, Hansen KD, Biswal S: Metabolic effects of air pollution exposure and reversibility. J Clin Invest 130(11):6034-6040, 2020.

Boukas L, Bjornsson HT, Hansen KD: Promoter CpG density predicts downstream gene loss-of-function intolerance. Am J Hum Genet 107(3):487-498, 2020.

Myint L, Wang R, Boukas L, Hansen KD, Goff LA, Avramopoulos D: A screen of 1,049 schizophrenia and 30 Alzheimer's-associated variants for regulatory potential. Am J Med Genet B Neuropsychiatr Genet 183(1):61-73, 2020.

Gorkin DU, Qiu Y, Hu M, Fletez-Brant K, Liu T, Schmitt AD, Noor A, Chiou J, Gaulton KJ, Sebat J, Li Y, Hansen KD, Ren B: Common DNA sequence variation influences 3-dimensional conformation of the human genome. Genome Biol 20(1):255, 2019.

Wulfridge P, Langmead B, Feinberg AP, Hansen KD: Analyzing whole genome bisulfite sequencing data from highly divergent genotypes. Nucleic Acids Res 47(19):e117, 2019.

Carosso GA, Boukas L, Augustin JJ, Nguyen HN, Winer BL, Cannon GH, Robertson JD, Zhang L, Hansen KD, Goff LA, Bjornsson HT: Precocious neuronal differentiation and disrupted oxygen responses in Kabuki syndrome. JCI Insight 4(20):129375, 2019.

Fahrner JA, Lin WY, Riddle RC, Boukas L, DeLeon VB, Chopra S, Lad SE, Luperchio TR, Hansen KD, Bjornsson HT: Precocious chondrocyte differentiation disrupts skeletal growth in Kabuki syndrome mice. JCI Insight 4(20):129380, 2019.

Boukas L, Havrilla JM, Hickey PF, Quinlan AR, Bjornsson HT, Hansen KD. Coexpression patterns define epigenetic regulators associated with neurological dysfunction. Genome Res 29(4):532-542, 2019.

Myint L, Avramopoulos DG, Goff LA, Hansen KD: Linear models enable powerful differential activity analysis in massively parallel reporter assays. BMC Genomics 20(1):209, 2019.

Rizzardi LF, Hickey PF, Rodriguez DiBlasi V, Tryggvadottir R, Callahan CM, Idrizi A, Hansen KD, Feinberg AP: Neuronal brain-region-specific DNA methylation and chromatin accessibility are associated with neuropsychiatric trait heritability. Nat Neurosci 22(2):307-316, 2019.

Barbeira AN, Dickinson SP, Bonazzola R, Zheng J, Wheeler HE, Torres JM, Torstenson ES, Shah KP, Garcia T, Edwards TL, Stahl EA, Huckins LM, GTEx Consortium (includes Hansen KD), Nicolae DL, Cox NJ, Im HK: Exploring the phenotypic consequences of tissue specific gene expression variation inferred from GWAS summary statistics. Nat Commun 9(1):1825, 2018.

Gaysinskaya V, Miller BF, De Luca C, van der Heijden GW, Hansen KD, Bortvin A: Transient reduction of DNA methylation at the onset of meiosis in male mice. Epigenetics Chromatin 11(1):15, 2018.

Barrington WT, Wulfridge P, Wells AE, Rojas CM, Howe SYF, Perry A, Hua K, Pellizzon MA, Hansen KD, Voy BH, Bennett BJ, Pomp D, Feinberg AP, Threadgill DW: Improving metabolic health through precision dietetics in mice. Genetics 208(1):399-417, 2018.

Saha A, Kim Y, Gewirtz ADH, Jo B, Gao C, McDowell IC, GTEx Consortium (includes Hansen K), Engelhardt BE, Battle A: Co-expression networks reveal the tissue-specific regulation of transcription and splicing. Genome Res 27(11):1843-1858, 2017.

Yang F, Wang J, GTEx Consortium (includes Hansen K), Pierce BL, Chen LS: Identifying cis-mediators for trans-eQTLs across many human tissues using genomic mediation analysis. Genome Res 27(11):1859-1871, 2017.

Tukiainen T, Villani AC, Yen A, Rivas MA, et al (includes Hansen K): Landscape of X chromosome inactivation across human tissues. Nature 550(7675):244-248, 2017.

eGTEx Project (includes Hansen KD): Enhancing GTEx by bridging the gaps between genotype, gene expression, and disease. Nat Genet 49(12):1664-1670, 2017.

Ramos M, Schiffer L, Re A, Azhar R, Basunia A, Rodriguez C, Chan T, Chapman P, Davis SR, Gomez-Cabrero D, Culhane AC, Haibe-Kains B, Hansen KD, Kodali H, Louis MS, Mer AS, Riester M, Morgan M, Carey V, Waldron L: Software for the integration of multiomics experiments in Bioconductor. Cancer Res 77(21):e39-e42, 2017.

Li X, Kim Y, Tsang EK, Davis JR, ..., et al (includes Hansen KD): The impact of rare variation on gene expression across tissues. Nature 550(7675):239-243, 2017.

Tan MH, Li Q, Shanmugam R, ..., et al (includes Hansen KD): Dynamic landscape and regulation of RNA editing in mammals. Nature 550(7675):249-254, 2017.

GTEx Consortium, Laboratory, Data Analysis & Coordinating Center (LDACC)-Analysis Working Group, ..., et al (includes Hansen KD): Genetic effects on gene expression across human tissues. Nature 550(7675):204-213, 2017.

Tukiainen T, Villani AC, Yen A, Rivas MA, ..., et al (includes Hansen KD): Landscape of X chromosome inactivation across human tissues. Nature 550(7675):244-248, 2017.

Cummings BB, Marshall JL, Tukiainen T, ..., Hansen KD, Hickey P, et al: Improving genetic diagnosis in Mendelian disease with transcriptome sequencing. Sci Transl Med 9(386):eaal5209, 2017.

Collado-Torres L, Nellore A, Kammers K, Ellis SE, Taub MA, Hansen KD, Jaffe AE, Langmead B, Leek JT: Reproducible RNA-seq analysis using recount2. Nat Biotechnol 35(4):319-321, 2017.

Fortin JP, Triche TJ Jr, Hansen KD: Preprocessing, normalization and integration of the Illumina HumanMethylationEPIC array with minfi. Bioinformatics 33(4):558-560, 2017.

Myint L, Kleensang A, Zhao L, Hartung T, Hansen KD: Joint bounding of peaks across samples improves differential analysis in mass spectrometry-based metabolomics. Anal Chem 89(6):3517-3523, 2017.

Zheng SC, Beck S, Jaffe AE, Koestler DC, Hansen KD, Houseman AE, Irizarry RA, Teschendorff AE: Correcting for cell-type heterogeneity in epigenome-wide association studies: revisiting previous analyses. Nat Methods 14(3):216-217, 2017.

Benjamin JS, Pilarowski GO, Carosso GA, Zhang L, Huso DL, Goff LA, Vernon HJ, Hansen KD, Bjornsson HT: A ketogenic diet rescues hippocampal memory defects in a mouse model of Kabuki syndrome. Proc Natl Acad Sci USA 114(1):125-130, 2017.

Nellore A, Jaffe AE, Fortin JP, Alquicira-Hernandez J, Collado-Torres L, Wang S, Phillips III RA, Karbhari N, Hansen KD, Langmead B, Leek JT: Human splicing diversity and the extent of unannotated splice junctions across human RNA-seq samples on the Sequence Read Archive. Genome Biol 17(1):266, 2016.

Andrews SV, Ladd-Acosta C, Feinberg AP, Hansen KD, Fallin MD: "Gap hunting" to characterize clustered probe signals in Illumina methylation array data. Epigenetics Chromatin 9:56, 2016.

Li X, Liu Y, Salz T, Hansen KD, Feinberg A: Whole-genome analysis of the methylome and hydroxymethylome in normal and malignant lung and liver. Genome Res 26(12):1730-1741, 2016.

Kannan L, Ramos M, Re A, El-Hachem N, Safikhani Z, Gendoo DM, Davis S, Gomez-Cabrero D, Castelo R, Hansen KD, Carey VJ, Morgan M, Culhane AC, Haibe-Kains B, Waldron L: Public data and open source tools for multi-assay genomic investigation of disease. Brief Bioinform 17(4):603-15, 2016.

Nellore A, Wilks C, Hansen KD, Leek JT, Langmead B: Rail-dbGaP: analyzing dbGaP-protected data in the cloud with Amazon Elastic MapReduce. Bioinformatics 32(16):2551-3, 2016.

Huber W, Carey V, Davis S, Hansen KD, Morgan M: The Bioconductor channel in F1000Research. F1000Research 4:217, 2016.

Gatto L, Hansen KD, Hoopmann MR, Hermjakob H, Kohlbacher O, Beyer A: Testing and validation of computational methods for mass spectrometry. J Proteome Res 15(3):809-14, 2016.

Vandiver AR, Idrizi A, Rizzardi L, Feinberg AP, Hansen KD: DNA methylation is stable during replication and cell cycle arrest. Sci Rep 5:17911, 2015.

Pacis A, Tailleux L, Morin AM, Lambourne J, MacIsaac JL, Yotova V, Dumaine A, Danckaert A, Luca F, Grenier JC, Hansen KD, Gicquel B, Yu M, Pai A, He C, Tung J, Pastinen T, Kobor MS, Pique-Regi R, Gilad Y, Barreiro LB: Bacterial infection remodels the DNA methylation landscape of human dendritic cells. Genome Res 25(12):1801-11, 2015.

Fortin JP, Hansen KD: Reconstructing A/B compartments as revealed by Hi-C using long-range correlations in epigenetic data. Genome Biol 16(1):180, 2015.

Vandiver AR, Irizarry RA, Hansen KD, Garza LA, Runarsson A, Li X, Chien AL, Wang TS, Leung SG, Kang S, Feinberg AP: Age and sun exposure-related widespread genomic blocks of hypomethylation in nonmalignant skin. Genome Biol 16(1):80, 2015.

Ziller MJ, Hansen KD, Meissner A, Aryee MJ: Coverage recommendations for methylation analysis by whole-genome bisulfite sequencing. Nat Methods 12(3):230-2, 2015.

Hong X, Hao K, Ladd-Acosta C, Hansen KD, Tsai HJ, Liu X, Xu X, Thornton TA, Caruso D, Keet CA, Sun Y, Wang G, Luo W, Kumar R, Fuleihan R, Singh AM, Kim JS, Story RE, Gupta RS, Gao P, Chen Z, Walker SO, Bartell TR, Beaty TH, Fallin MD, Schleimer R, Holt PG, Nadeau KC, Wood RA, Pongracic JA, Weeks DE, Wang X: Genome-wide association study identifies peanut allergy-specific loci and evidence of epigenetic mediation in US children. Nat Commun 6:6304, 2015.

Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oles AK, Pages H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M: Orchestrating high-throughput genomic analysis with Bioconductor. Nat Methods 12(2):115-21, 2015.

 

 

Benjamin Harvey (go to top of document)

 

Harvey BS, Ji SY: Cloud-scale genomic signals processing for robust large-scale cancer genomic microarray data analysis. IEEE J Biomed Health Inform 21(1):238-245, 2020.

 

 

Stephanie Hicks (go to top of document)

 

Hou W, Ji Z, Ji H, Hicks SC: A systematic evaluation of single-cell RNA-sequencing imputation methods. Genome Biol 21(1):218, 2020.

Lahnemann D, Koster J, Szczurek E, McCarthy DJ, Hicks SC, et al: Eleven grand challenges in single-cell data science. Genome Biol 21(1):31, 2020.

Amezquita RA, Lun ATL, Becht E, Carey VJ, Carpp LN, Geistlinger L, Marini F, Rue-Albrecht K, Risso D, Soneson C, Waldron L, Pages H, Smith ML, Huber W, Morgan M, Gottardo R, Hicks SC: Orchestrating single-cell analysis with Bioconductor. Nat Methods 17(2):137-145, 2020.

Townes FW, Hicks SC, Aryee MJ, Irizarry RA: Feature selection and dimension reduction for single-cell RNA-Seq based on a multinomial model. Genome Biol 20(1):295, 2019.

Hicks SC, Irizarry RA: methylCC: technology-independent estimation of cell type composition using differentially methylated regions. Genome Biol 20(1):261, 2019.

Korthauer K, Kimes PK, Duvallet C, Reyes A, Subramanian A, Teng M, Shukla C, Alm EJ, Hicks SC: A practical guide to methods controlling false discoveries in computational biology. Genome Biol 20(1):118, 2019.

Hicks SC, Irizarry RA: A guide to teaching data science. The American Statistician 72(4):382-391, 2018.

Kumar MS, Slud EV, Okrah K, Hicks SC, Hannenhalli S, Corrada Bravo H: Analysis and correction of compositional bias in sparse sequencing count data. BMC Genomics 19(1):799, 2018.

Hicks SC, Townes FW, Teng M, Irizarry RA: Missing data and technical variability in single-cell RNA-sequencing experiments. Biostatistics 19(4):562-578, 2018.

Hicks SC, Okrah K, Paulson JN, Quackenbush J, Irizarry RA, Bravo HC: Smooth quantile normalization. Biostatistics 19(2):185-198, 2018.

Saliba J, Zabriskie R, Ghosh R, Powell BC, Hicks S, Kimmel M, Meng Q, Ritter DI, Wheeler DA, Gibbs RA, Tsai FT, Plon SE: Pharmacogenetic characterization of naturally occurring germline NT5C1A variants to chemotherapeutic nucleoside analogs. Pharmacogenet Genomics 26(6):271-9, 2016.

Hicks SC, Irizarry RA: quantro: a data-driven approach to guide the choice of an appropriate normalization method. Genome Biol 16:117, 2015.

Osman AA, Neskey DM, Katsonis P, Patel AA, Ward AM, Hsu TK, Hicks SC, McDonald TO, Ow TJ, Alves MO, Pickering CR, Skinner HD, Zhao M, Sturgis EM, Kies MS, El-Naggar A, Perrone F, Licitra L, Bossi P, Kimmel M, Frederick MJ, Lichtarge O, Myers JN: Evolutionary action score of TP53 coding variants is predictive of platinum response in head and neck cancer patients. Cancer Res 75(7):1205-15, 2015.

Neskey DM, Osman AA, Ow TJ, Katsonis P, McDonald T, Hicks SC, Hsu TK, Pickering CR, Ward A, Patel A, Yordy JS, Skinner HD, Giri U, Sano D, Story MD, Beadle BM, El-Naggar AK, Kies MS, William WN, Caulin C, Frederick M, Kimmel M, Myers JN, Lichtarge O: Evolutionary action score of TP53 identifies high-risk mutations associated with decreased survival and increased distant metastases in head and neck cancer. Cancer Res 75(7):1527-36, 2015.

 

 

Leah Jager (go to top of document)

 

Aboumatar H, Naqibuddin M, Neiman J, Saunders J, Kim S, Chaudhry H, Garcia-Morales E, Robinson N, McBurney M, Jager L, Ajayi T, Bone L, Chung S, Farrell B, Joo Jin H, Linnell J, Pirfo M, Rand C, Riley P, Salvaterra C, Shea K, Singh J, Wise R: Methodology and baseline characteristics of a randomized controlled trial testing a health care professional and peer-support program for patients with chronic obstructive pulmonary disease: The BREATHE2 study. Contemp Clin Trials 94:106023, 2020.

Beavis AL, Yen TT, Stone RL, Wethington SL, Carr C, Son J, Chambers L, Michener CM, Ricci S, Burkett WC, Richardson DL, Staley AS, Ahn S, Gehrig PA, Torres D, Dowdy SC, Sullivan MW, Modesitt SC, Watson C, Veade A, Ehrisman J, Havrilesky L, Secord AA, Loreen A, Griffin K, Jackson A, Viswanathan AN, Jager LR, Fader AN: Adjuvant therapy for early stage, endometrial cancer with lymphovascular space invasion: Is there a role for chemotherapy? Gynecol Oncol 156(3):568-574, 2020.

Thomaier L, Jager L, Stone R, Wethington S, Fader A, Tanner EJ: Risk of empty lymph node packets in sentinel lymph node mapping for endometrial cancer using indocyanine green. Int J Gynecol Cancer 29(3):513-517, 2019.

Myint L, Leek JT, Jager LR: Explanation of observational data engenders a causal belief about smoking and cancer. PeerJ 6:e5597, 2018.

Leek JT, Jager LR: Is most published research really false? Annu Rev Stat Appl 4:109-122, 2017.

Phillips DJ, McGlaughlin A, Ruth D, Jager LR, Soldan A, Alzheimer's Disease Neuroimaging Initiative: Graph theoretic analysis of structural connectivity across the spectrum of Alzheimer's disease: The importance of graph creation methods. Neuroimage Clin 7:377-90, 2015.

 

 

Hongkai Ji   (go to top of document)

 

Hong X, Zhang B, Liang L, Zhang Y, Ji Y, Wang G, Ji H, Clish CB, Burd I, Pearson C, Zuckerman B, Hu FB, Wang X: Postpartum plasma metabolomic profile among women with preeclampsia and preterm delivery: implications for long-term health. BMC Med 18(1):277, 2020.

Qiu X, Ma F, Zhao M, Cao Y, Shipp L, Liu A, Dutta A, Singh A, Braikia FZ, De S, Wood WH 3rd, Becker KG, Zhou W, Ji H, Zhao K, Atchison ML, Sen R: Altered 3D chromatin structure permits inversional recombination at the IgH locus. Sci Adv 6(33):eaaz8850, 2020.

Hou W, Ji Z, Ji H, Hicks SC: A systematic evaluation of single-cell RNA-sequencing imputation methods. Genome Biol 21(1):218, 2020.

Surkan PJ, Hong X, Zhang B, Nawa N, Ji H, Tang WY, Ji Y, Kimmel MC, Wang G, Pearson C, Wang X: Can social support during pregnancy affect maternal DNA methylation? Findings from a cohort of African-Americans. Pediatr Res 88(1):131-138, 2020.

Ji Z, Zhou W, Hou W, Ji H: Single-cell ATAC-seq signal extraction and enhancement with SCATE. Genome Biol 21(1):161, 2020.

Zhang J, Ji Z, Caushi JX, El Asmar M, Anagnostou V, Cottrell TR, Chan HY, Suri P, Guo H, Merghoub T, Chaft JE, Reuss JE, Tam AJ, Blosser RL, Abu-Akeel M, Sidhom JW, Zhao N, Ha JS, Jones DR, Marrone KA, Naidoo J, Gabrielson E, Taube JM, Velculescu VE, Brahmer JR, Housseau F, Hellmann MD, Forde PM, Pardoll DM, Ji H, Smith KN: Compartmental analysis of T-cell clonal dynamics as a function of pathologic response to neoadjuvant PD-1 blockade in resectable non-small cell lung cancer. Clin Cancer Res 26(6):1327-1337, 2020.

Lex RK, Ji Z, Falkenstein KN, Zhou W, Henry JL, Ji H, Vokes SA: GLI transcriptional repression regulates tissue-specific enhancer activity in response to Hedgehog signaling. Elife 9:e50670, 2020.

Surkan PJ, Dong L, Ji Y, Hong X, Ji H, Kimmel M, Tang WY, Wang X: Paternal involvement and support and risk of preterm birth: findings from the Boston birth cohort. J Psychosom Obstet Gynaecol 40(1):48-56, 2019.

Chen Z, Ji Z, Ngiow SF, Manne S, Cai Z, Huang AC, Johnson J, Staupe RP, Bengsch B, Xu C, Yu S, Kurachi M, Herati RS, Vella LA, Baxter AE, Wu JE, Khan O, Beltra JC, Giles JR, Stelekati E, McLane LM, Lau CW, Yang X, Berger SL, Vahedi G, Ji H, Wherry EJ: TCF-1-centered transcriptional network drives an effector versus exhausted CD8 T cell-fate decision. Immunity 51(5):840-855, 2019.

Zhou W, Ji Z, Fang W, Ji H: Global prediction of chromatin accessibility using small-cell-number and single-cell RNA-seq. Nucleic Acids Res 47(19):e121, 2019.

Wang G, DiBari J, Bind E, Steffens AM, Mukherjee J, Azuine RE, Singh GK, Hong X, Ji Y, Ji H, Pearson C, Zuckerman BS, Cheng TL, Wang X: Association between maternal exposure to lead, maternal folate status, and intergenerational risk of childhood overweight and obesity. JAMA Netw Open 2(10):e1912343, 2019.

Hong X, Liang L, Sun Q, Keet CA, Tsai HJ, Ji Y, Wang G, Ji H, Clish C, Pearson C, Wang Y, Wood RA, Hu FB, Wang X: Maternal triacylglycerol signature and risk of food allergy in offspring. J Allergy Clin Immunol 144(3):729-737, 2019.

Azuine RE, Ji Y, Chang HY, Kim Y, Ji H, DiBari J, Hong X, Wang G, Singh GK, Pearson C, Zuckerman B, Surkan PJ, Wang X: Prenatal risk factors and perinatal and postnatal outcomes associated with maternal opioid exposure in an urban, low-income, multiethnic US population. JAMA Netw Open 2(6):e196405, 2019.

Olapeju B, Saifuddin A, Wang G, Ji Y, Hong X, Raghavan R, Summers A, Keiser A, Ji H, Zuckerman B, Yarrington C, Hao L, Surkan PJ, Cheng TL, Wang X: Maternal postpartum plasma folate status and preterm birth in a high-risk US population. Public Health Nutr 22(7):1281-1291, 2019.

Stephens KE, Zhou W, Ji Z, Chen Z, He S, Ji H, Guan Y, Taverna SD: Sex differences in gene regulation in the dorsal root ganglion after nerve injury. BMC Genomics 20(1):147, 2019.

Ji Z, Ji H: Pseudotime reconstruction using TSCAN. Methods Mol Biol 1935:115-124, 2019.

Hong X, Sherwood B, Ladd-Acosta C, Peng S, Ji H, Hao K, Burd I, Bartell TR, Wang G, Tsai HJ, Liu X, Ji Y, Wahl A, Caruso D, Lee-Parritz A, Zuckerman B, Wang X: Genome-wide DNA methylation associations with spontaneous preterm birth in US blacks: findings in maternal and cord blood samples. Epigenetics 13(2):163-172, 2018.

Tsai HJ, Wang G, Hong X, Yao TC, Ji Y, Radovick S, Ji H, Cheng TL, Wang X: Early life weight gain and development of childhood asthma in a prospective birth cohort. Ann Am Thorac Soc 15(10):1197-1204, 2018.

Zhao M, Joy J, Zhou W, De S, Wood WH 3rd, Becker KG, Ji H, Sen R: Transcriptional outcomes and kinetic patterning of gene expression in response to NF-κB activation. PLoS Biol 16(9):e2006347, 2018.

Zhang B, Hong X, Ji H, Tang WY, Kimmel M, Ji Y, Pearson C, Zuckerman B, Surkan PJ, Wang X: Maternal smoking during pregnancy and cord blood DNA methylation: new insight on sex differences and effect modification by maternal folate levels. Epigenetics 13(5):505-518, 2018.

Ji Y, Riley AW, Lee LC, Hong X, Wang G, Tsai HJ, Mueller NT, Pearson C, Thermitus J, Panjwani A, Ji H, Bartell TR, Burd I, Fallin MD, Wang X: Maternal biomarkers of acetaminophen use and offspring attention deficit hyperactivity disorder. Brain Sci 8(7):127, 2018.

Kuang Z, Ji H, Boeke JD: Stress response factors drive regrowth of quiescent cells. Curr Genet 64(4):807-810, 2018.

Wang J, Zibetti C, Shang P, Sripathi SR, Zhang P, Cano M, Hoang T, Xia S, Ji H, Merbs SL, Zack DJ, Handa JT, Sinha D, Blackshaw S, Qian J: ATAC-Seq analysis reveals a widespread decrease of chromatin accessibility in age-related macular degeneration. Nat Commun 9(1):1364, 2018.

Qiu X, Kumari G, Gerasimova T, Du H, Labaran L, Singh A, De S, Wood WH 3rd, Becker KG, Zhou W, Ji H, Sen R: Sequential enhancer sequestration dysregulates recombination center formation at the IgH locus. Mol Cell 70(1):21-33, 2018.

Kuang Z, Ji Z, Boeke JD, Ji H: Dynamic motif occupancy (DynaMO) analysis identifies transcription factors and their binding sites driving dynamic biological processes. Nucleic Acids Res 46(1):e2, 2018.

Ji Y, Riley AW, Lee LC, Volk H, Hong X, Wang G, Angomas R, Stivers T, Wahl A, Ji H, Bartell TR, Burd I, Paige D, Fallin MD, Zuckerman B, Wang X: A prospective birth cohort study on maternal cholesterol levels and offspring attention deficit hyperactivity disorder: new insight on sex differences. Brain Sci 8(1):3, 2017.

Han F, Ji H, Ji Z, Wang H: A provable smoothing approach for high dimensional generalized regression with applications in genomics. Electron J Statist 11(2):4347-4403, 2017.

Martos SN, Li T, Ramos RB, Lou D, Dai H, Xu JC, Gao G, Gao Y, Wang Q, An C, Zhang X, Jia Y, Dawson VL, Dawson TM, Ji H, Wang Z: Two approaches reveal a new paradigm of 'switchable or genetics-influenced allele-specific DNA methylation' with potential in human disease. Cell Discov 3:17038, 2017.

Kuang Z, Pinglay S, Ji H, Boeke JD: Msn2/4 regulate expression of glycolytic enzymes and control transition from quiescence to growth. Elife 6:e29938, 2017.

Zhou W, Sherwood B, Ji Z, Xue Y, Du F, Bai J, Ying M, Ji H: Genome-wide prediction of DNase I hypersensitivity using gene expression. Nat Commun 8(1):1038, 2017.

Ji Z, Zhou W, Ji H: Single-cell regulome data analysis by SCRAT. Bioinformatics 33(18):2930-2932, 2017.

Mao G, Nachman RM, Sun Q, Zhang X, Koehler K, Chen Z, Hong X, Wang G, Caruso D, Zong G, Pearson C, Ji H, Biswal S, Zuckerman B, Wills-Karp M, Wang X: Individual and joint effects of early-life ambient exposure and maternal prepregnancy obesity on childhood overweight or obesity. Environ Health Perspect 125(6):067005, 2017.

Hong X, Hao K, Ji H, Peng S, Sherwood B, Di Narzo A, Tsai HJ, Liu X, Burd I, Wang G, Ji Y, Caruso D, Mao G, Bartell TR, Zhang Z, Pearson C, Heffner L, Cerda S, Beaty TH, Fallin MD, Lee-Parritz A, Zuckerman B, Weeks DE, Wang X: Genome-wide approach identifies a novel gene-maternal pre-pregnancy BMI interaction on preterm birth. Nat Commun 8:15608, 2017.

White DT, Sengupta S, Saxena MT, Xu Q, Hanes J, Ding D, Ji H, Mumm JS: Immunomodulation-accelerated neuronal regeneration following selective rod photoreceptor cell ablation in the zebrafish retina. Proc Natl Acad Sci 114(18):E3719-E3728, 2017.

Zhou W, Sherwood B, Ji H: Computational prediction of the global functional genomic landscape: applications, methods, and challenges. Hum Hered 81(2):88-105, 2016.

Norrie JL, Li Q, Co S, Huang BL, Ding D, Uy JC, Ji Z, Mackem S, Bedford MT, Galli A, Ji H, Vokes SA: PRMT5 is essential for the maintenance of chondrogenic progenitor cells in the limb bud. Development 143(24):4608-4619, 2016.

White DT, Eroglu AU, Wang G, Zhang L, Sengupta S, Ding D, Rajpurohit SK, Walker SL, Ji H, Qian J, Mumm JS: ARQiv-HTS, a versatile whole-organism screening platform enabling in vivo drug discovery at high-throughput rates. Nat Protoc 11(12):2432-2453, 2016.

Hong X, Ladd-Acosta C, Hao K, Sherwood B, Ji H, et al: Epigenome-wide association study links site-specific DNA methylation changes with cow's milk allergy. J Allergy Clin Immunol 138(3):908-911, 2016.

Wang G, Hu FB, Mistry KB, Zhang C, Ren F, Huo Y, Paige D, Bartell T, Hong X, Caruso D, Ji Z, Chen Z, Ji Y, Pearson C, Ji H, Zuckerman B, Cheng TL, Wang X: Association between maternal prepregnancy body mass index and plasma folate concentrations with child metabolic health. JAMA Pediatr 170(8):e160845, 2016.

Ji Z, Ji H: TSCAN: Pseudo-time reconstruction and evaluation in single-cell RNA-seq analysis. Nucleic Acids Res 44(13):e117, 2016.

Wang J, Xia S, Arand B, Zhu H, Machiraju R, Huang K, Ji H, Qian J: Single-cell co-expression analysis reveals distinct functional modules, co-regulation mechanisms and clinical outcomes. PLoS Comput Biol 12(4):e1004892, 2016.

Li Q, Lex RK, Chung H, Giovanetti SM, Ji Z, Ji H, Person MD, Kim J, Vokes SA: The pluripotency factor NANOG binds to GLI proteins and represses Hedgehog-mediated transcription. J Biol Chem 291(13):7171-82, 2016.

Ji Z, Vokes SA, Dang CV, Ji H: Turning publicly available gene expression data into discoveries using gene set context analysis. Nucleic Acids Res 44(1):e8, 2016.

Lewandowski JP, Du F, Zhang S, Powell MB, Falkenstein KN, Ji H, Vokes SA: Spatiotemporal regulation of GLI target genes in the mammalian limb bud. Dev Biol 406(1):92-103, 2015.

Jin K, Park S, Teo WW, Korangath P, Cho SS, Yoshida T, Gyorffy B, Goswami CP, Nakshatri H, Cruz LA, Zhou W, Ji H, Su Y, Ekram M, Wu Z, Zhu T, Polyak K, Sukumar S: HOXB7 is an ERα cofactor in the activation of HER2 and multiple ER target genes leading to endocrine resistance. Cancer Discov 5(9):944-59, 2015.

Wamaitha SE, Del Valle I, Cho LT, Wei Y, Fogarty NM, Blakeley P, Sherwood RI, Ji H, Niakan KK: Gata6 potently initiates reprograming of pluripotent and differentiated cells to extraembryonic endoderm stem cells. Genes Dev 29(12):1239-55, 2015.

Zhang S, Du F, Ji H: A novel DNA sequence motif in human and mouse genomes. Sci Rep 5:10444, 2015.

Wei Y, Tenzen T, Ji H: Joint analysis of differential gene expression in multiple studies using correlation motifs. Biostatistics 16(1):31-46, 2015.

 

 

Jeffrey Leek   (go to top of document)

 

Haibe-Kains B, Adam GA, Hosny A, Khodakarami F, ..., Leek JT, et al: Transparency and reproducibility in artificial intelligence. Nature 586(7829):E14-E16, 2020.

Imada EL, Sanchez DF, Collado-Torres L, ..., Jaffe AE, Leek JT, et al:Recounting the FANTOM CAGE-Associated Transcriptome. Genome Res 30(7):1073-1081, 2020.

Ramilowski JA, Yip CW, Agrawal S, ..., Leek J, et al: Functional annotation of human long noncoding RNAs via molecular phenotyping. Genome Res 30(7):1060-1072, 2020.

Patil P, Peng RD, Leek JT: A visual tool for defining reproducibility and replicability. Nat Hum Behav 3(7):650-652, 2019.

Parsana P, Ruberman C, Jaffe AE, Schatz MC, Battle A, Leek JT: Addressing confounding artifacts in reconstruction of gene co-expression networks. Genome Biol 20(1):94, 2019.

Boca SM, Leek JT: A direct approach to estimating false discovery rates conditional on covariates. PeerJ 6:e6035, 2018.

Ellis SE, Leek JT: How to share data for collaboration. TAS 72(1):53-57, 2018.

Myint L, Leek JT, Jager LR: Explanation of observational data engenders a causal belief about smoking and cancer. PeerJ 6:e5597, 2018.

Jaffe AE, Straub RE, Shin JH, Tao R, Gao Y, Collado-Torres L, Kam-Thong T, Xi HS, Quan J, Chen Q, Colantuoni C, Ulrich WS, Maher BJ, Deep-Soboslay A, BrainSeq Consortium, Cross AJ, Brandon NJ, Leek JT, Hyde TM, Kleinman JE, Weinberger DR: Developmental and genetic regulation of the human cortex transcriptome illuminate schizophrenia pathogenesis. Nat Neurosci 21(8):1117-1125, 2018.

Ellis SE, Collado-Torres L, Jaffe A, Leek JT: Improving the value of public RNA-seq expression data by phenotype prediction. Nucleic Acids Res 46(9):e54, 2018.

Jaffe AE, Tao R, Norris AL, Kealhofer M, Nellore A, Shin JH, Kim D, Jia Y, Hyde TM, Kleinman JE, Straub RE, Leek JT, Weinberger DR: qSVA framework for RNA quality correction in differential expression analysis. Proc Natl Acad Sci U S A 114(27):7130-7135, 2017.

Collado-Torres L, Nellore A, Kammers K, Ellis SE, Taub MA, Hansen KD, Jaffe AE, Langmead B, Leek JT: Reproducible RNA-seq analysis using recount2. Nat Biotechnol 35(4):319-321, 2017.

Leek JT, Jager LR: Is most published research really false? Annu Rev Stat Appl 4:109-122, 2017.

Collado-Torres L, Nellore A, Frazee AC, Wilks C, Love MI, Langmead B, Irizarry RA, Leek JT, Jaffe AE: Flexible expressed region analysis for RNA-seq with derfinder. Nucleic Acids Res 45(2):e9, 2017.

Kammers K, Taub MA, Ruczinski I, Martin J, Yanek LR, Frazee A, Gao Y, Hoyle D, Faraday N, Becker DM, Cheng L, Wang ZZ, Leek JT, Becker LC, Mathias RA: Integrity of induced pluripotent stem cell (iPSC) derived megakaryocytes as assessed by genetic and transcriptomic analysis. PLoS One 12(1):e0167794, 2017.

Patil P, Colantuoni E, Leek JT, Rosenblum M: Genomic and clinical predictors for improving estimator precision in randomized trials of breast cancer treatments. Contemp Clin Trials Commun 3:48-54, 2016.

Darby MM, Leek JT, Langmead B, Yolken RH, Sabunciyan S: Widespread splicing of repetitive element loci into coding regions of gene transcripts. Hum Mol Genet 25(22):4962-4982, 2016.

Nellore A, Jaffe AE, Fortin JP, Alquicira-Hernandez J, Collado-Torres L, Wang S, Phillips III RA, Karbhari N, Hansen KD, Langmead B, Leek JT: Human splicing diversity and the extent of unannotated splice junctions across human RNA-seq samples on the Sequence Read Archive. Genome Biol 17(1):266, 2016.

Manimaran S, Selby HM, Okrah K, Ruberman C, Leek JT, Quackenbush J, Haibe-Kains B, Bravo HC, Johnson WE: BatchQC: interactive software for evaluating sample and batch effects in genomic data. Bioinformatics 32(24):3836-3838, 2016.

Pertea M, Kim D, Pertea GM, Leek JT, Salzberg SL: Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown. Nat Protoc 11(9):1650-67, 2016.

Nellore A, Wilks C, Hansen KD, Leek JT, Langmead B: Rail-dbGaP: analyzing dbGaP-protected data in the cloud with Amazon Elastic MapReduce. Bioinformatics 32(16):2551-3, 2016.

Patil P, Peng RD, Leek JT: What should researchers expect when they replicate studies? A statistical view of replicability in psychological science. Perspect Psychol Sci 11(4):539-44, 2016.

Wu PH, Phillip JM, Khatau SB, Chen WC, Stirman J, Rosseel S, Tschudi K, Van Patten J, Wong M, Gupta S, Baras AS, Leek JT, Maitra A, Wirtz D: Evolution of cellular morpho-phenotypes in cancer metastasis. Sci Rep 5:18437, 2015.

Jaffe AE, Hyde T, Kleinman J, Weinbergern DR, Chenoweth JG, McKay RD, Leek JT, Colantuoni C: Practical impacts of genomic data "cleaning" on biological discovery using surrogate variable analysis. BMC Bioinformatics 16:372, 2015.

Frazee AC, Jaffe AE, Langmead B, Leek JT: Polyester: simulating RNA-seq datasets with differential transcript expression. Bioinformatics 31(17):2778-84, 2015.

Patil P, Bachant-Winner PO, Haibe-Kains B, Leek JT: Test set bias affects reproducibility of gene signatures. Bioinformatics 31(14):2318-23, 2015.

Leek JT, Peng RD: Statistics: P values are just the tip of the iceberg. Nature 520(7549):612, 2015.

Leek JT, Peng RD: What is the question? Science 347(6228):1314-1315, 2015.

Frazee AC, Pertea G, Jaffe AE, Langmead B, Salzberg SL, Leek JT: Ballgown bridges the gap between transcriptome assembly and expression analysis. Nat Biotechnol 33(3):243-6, 2015.

Leek JT, Peng RD: Opinion: Reproducible research can still be wrong: Adopting a prevention approach. Proc Natl Acad Sci 112(6):1645-6, 2015.

Jaffe AE, Shin J, Collado-Torres L, Leek JT, Tao R, Li C, Gao Y, Jia Y, Maher BJ, Hyde TM, Kleinman JE, Weinberger DR: Developmental regulation of human cortex transcription and its clinical relevance at single base resolution. Nat Neurosci 18(1):154-61, 2015.

 

 

Ximin Li   (go to top of document)

 

Ong SS, Linz MO, Li X, Liu TYA, Han IC, Scott AW: Retinal thickness and microvascular changes in children with sickle cell disease evaluated by optical coherence tomography (OCT) and OCT angiography. Am J Ophthalmol 209:88-98, 2020.

McCarthy ML, Haynes S, Li X, Mann NC, Newgard CD, Lewis JF, Simon AE, Wood SF, Zeger SL: "Make the Call, Don't Miss a Beat" campaign: effect on emergency medical services use in women with heart attack signs. Womens Health Issues 29(5):392-399, 2019.

Hosey MM, Leoutsakos JS, Li X, Dinglas VD, Bienvenu OJ, Parker AM, Hopkins RO, Needham DM, Neufeld KJ: Screening for posttraumatic stress disorder in ARDS survivors: validation of the Impact of Event Scale-6 (IES-6). Crit Care 23(1):276, 2019.

Hutton HE, Lesko CR, Li X, Thompson CB, Lau B, Napravnik S, Mayer KH, Mathews WC, McCaul ME, Crane HM, Fredericksen RJ, Cropsey KL, Saag M, Christopoulos K, Chander G: Alcohol use patterns and subsequent sexual behaviors among women, men who have sex with men and men who have sex with women engaged in routine HIV care in the United States. AIDS Behav 23(6):1634-1646, 2019.

Lewis JF, Zeger SL, Li X, Mann NC, Newgard CD, Haynes S, Wood SF, Dai M, Simon AE, McCarthy ML: Gender differences in the quality of EMS care nationwide for chest pain and out-of-hospital cardiac arrest. Womens Health Issues 29(2):116-124, 2019.

Ellenbogen MI, Brotman DJ, Prichett L, Li X, Feldman LS: Contemporary rates of preoperative cardiac testing prior to inpatient hip fracture surgery. J Hosp Med 14(4):224-228, 2019.

Ambinder EB, Harvey SC, Panigrahi B, Li X, Woods RW: Synthesized mammography: the new standard of care when screening for breast cancer with digital breast tomosynthesis? Acad Radiol 25(8):973-976, 2018.

Commodore-Mensah Y, Selvin E, Aboagye J, Turkson-Ocran RA, Li X, Himmelfarb CD, Ahima RS, Cooper LA: Hypertension, overweight/obesity, and diabetes among immigrants in the United States: an analysis of the 2010-2016 National Health Interview Survey. BMC Public Health 18(1):773, 2018.

Semba RD, Trehan I, Li X, Salem N Jr, Moaddel R, Ordiz MI, Maleta KM, Kraemer K, Manary MJ: Low serum ω-3 and ω-6 polyunsaturated fatty acids and other metabolites are associated with poor linear growth in young children from rural Malawi. Am J Clin Nutr 106(6):1490-1499, 2017.

Semba RD, Trehan I, Li X, Moaddel R, Ordiz MI, Maleta KM, Kraemer K, Shardell M, Ferrucci L, Manary M: Environmental enteric dysfunction is associated with carnitine deficiency and altered fatty acid oxidation. EBioMedicine 17:57-66, 2017.

McCarthy ML, Shokoohi H, Boniface KS, Eggelton R, Lowey A, Lim K, Shesser R, Li X, Zeger SL: Ultrasonography versus landmark for peripheral intravenous cannulation: a randomized controlled trial. Ann Emerg Med 68(1):10-8, 2016.

Orman G, Wang KY, Li X, Thompson C, Huisman TA, Izbudak I: Diffusion tensor imaging of the cervical spinal cord in children. Childs Nerv Syst 31(8):1239-45, 2015. 

 

Martin Lindquist   (go to top of document)

 

Mejia AF, Yue YR, Bolin D, Lindgren F, Lindquist MA: A Bayesian general linear modeling approach to cortical surface fMRI data analysis. JASA 115(530):501-520, 2020.

Lindquist M: Neuroimaging results altered by varying analysis pipelines. Nature 582(7810):36-37, 2020.

Geuter S, Reynolds Losin EA, Roy M, Atlas LY, Schmidt L, Krishnan A, Koban L, Wager TD, Lindquist MA: Multiple brain networks mediating stimulus-pain relationships in humans. Cereb Cortex 30(7):4204-4219, 2020.

Zhao Y, Lindquist MA, Caffo BS: Sparse principal component based high-dimensional mediation analysis. Comput Stat Data Anal 142: 106835, 2020.

Sobel ME, Lindquist MA: Estimating causal effects in studies of human brain function: New models, methods and estimands. Ann Appl Stat 14(1): 452-472, 2020.

Lurie DJ, Kessler D, Bassett DS, Betzel RF, Breakspear M, Kheilholz S, Kucyi A, Liegeois R, Lindquist MA, McIntosh AR, Poldrack RA, Shine JM, Thompson WH, Bielczyk NZ, Douw L, Kraft D, Miller RL, Muthuraman M, Pasquini L, Razi A, Vidaurre D, Xie H, Calhoun VD: Questions and controversies in the study of time-varying functional connectivity in resting fMRI. Netw Neurosci 4(1):30-69, 2020.

van der Miesen MM, Lindquist MA, Wager TD: Neuroimaging-based biomarkers for pain: state of the field and current directions. Pain Rep 4(4):e751, 2019.

Schambra HM, Xu J, Branscheidt M, Lindquist M, Uddin J, Steiner L, Hertler B, Kim N, Berard J, Harran MD, Cortes JC, Kitago T, Luft A, Krakauer JW, Celnik PA: Differential poststroke motor recovery in an arm versus hand muscle in the absence of motor evoked potentials. Neurorehabil Neural Repair 33(7):568-580, 2019.

Lindquist MA, Geuter S, Wager TD, Caffo BS: Modular preprocessing pipelines can reintroduce artifacts into fMRI data. Hum Brain Mapp 40(8):2358-2376, 2019.

Honari H, Choe AS, Pekar JJ, Lindquist MA: Investigating the impact of autocorrelation on time-varying connectivity. Neuroimage 197:37-48, 2019.

Seminowicz DA, Remeniuk B, Krimmel SR, Smith MT, Barrett FS, Wulff AB, Furman AJ, Geuter S, Lindquist MA, Irwin MR, Finan PH: Pain-related nucleus accumbens function: modulation by reward and sleep disruption. Pain 160(5):1196-1207, 2019.

Branscheidt M, Kassavetis P, Anaya M, Rogers D, Huang HD, Lindquist MA, Celnik P: Fatigue induces long-lasting detrimental changes in motor-skill learning. Elife 8:e40578, 2019.

Xu J, Branscheidt M, Schambra H, Steiner L, Widmer M, Diedrichsen J, Goldsmith J, Lindquist M, Kitago T, Luft AR, Krakauer JW, Celnik PA, SMARTS Study Group: Rethinking interhemispheric imbalance as a target for stroke neurorehabilitation. Ann Neurol 85(4):502-513, 2019.

Krause AJ, Prather AA, Wager TD, Lindquist MA, Walker MP: The pain of sleep loss: a brain characterization in humans. J Neurosci 39(12):2291-2300, 2019.

Shappell H, Caffo BS, Pekar JJ, Lindquist MA: Improved state change estimation in dynamic functional connectivity using hidden semi-Markov models. Neuroimage 191:243-257, 2019.

Zhu X, Suarez-Jimenez B, Lazarov A, Helpman L, Papini S, Lowell A, Durosky A, Lindquist MA, Markowitz JC, Schneier F, Wager TD, Neria Y: Exposure-based therapy changes amygdala and hippocampus resting-state functional connectivity in patients with posttraumatic stress disorder. Depress Anxiety 35(10):974-984, 2018.

Cheng JC, Rogachov A, Hemington KS, Kucyi A, Bosma RL, Lindquist MA, Inman RD, Davis KD: Multivariate machine learning distinguishes cross-network dynamic functional connectivity patterns in state and trait neuropathic pain. Pain 159(9):1764-1776, 2018.

Solo V, Poline JB, Lindquist MA, Simpson SL, Bowman FD, Chung MK, Cassidy B: Connectivity in fMRI: blind spots and breakthroughs. IEEE Trans Med Imaging 37(7):1537-1550, 2018.

Barber AD, Lindquist MA, DeRosse P, Karlsgodt KH: Dynamic functional connectivity states reflecting psychotic-like experiences. Biol Psychiatry Cogn Neurosci Neuroimaging 3(5):443-453, 2018.

Chen OY, Crainiceanu C, Ogburn EL, Caffo BS, Wager TD, Lindquist MA: High-dimensional multivariate mediation with application to neuroimaging data. Biostatistics 19(2):121-136, 2018.

Mejia AF, Nebel MB, Barber AD, Choe AS, Pekar JJ, Caffo BS, Lindquist MA: Improved estimation of subject-level functional connectivity using full and partial correlation with empirical Bayes shrinkage. Neuroimage 172:478-491, 2018.

Webb-Vargas Y, Chen S, Fisher A, Mejia A, Xu Y, Crainiceanu C, Caffo B, Lindquist MA: Big data and neuroimaging. Stat Biosci 9(2):543-558, 2017.

Syed MF, Lindquist MA, Pillai JJ, Agarwal S, Gujar SK, Choe AS, Caffo B, Sair HI: Dynamic functional connectivity states between the dorsal and ventral sensorimotor networks revealed by dynamic conditional correlation analysis of resting-state functional magnetic resonance imaging. Brain Connect 7(10):635-642, 2017.

Mejia AF, Nebel MB, Eloyan A, Caffo B, Lindquist MA: PCA leverage: outlier detection for high-dimensional functional magnetic resonance imaging data. Biostatistics 18(3):521-536, 2017.

Yoshimura A, Goodson C, Johns JT, Towe MM, Irvine ES, Rendradjaja NA, Max LK, LaFlam A, Ledford EC, Probert J, Tieges Z, Edwin DH, MacLullich AMJ, Hogue CW, Lindquist MA, Gurakar A, Neufeld KJ, Kamiya A: Altered cortical brain activity in end stage liver disease assessed by multi-channel near-infrared spectroscopy: associations with delirium. Sci Rep 7(1):9258, 2017.

Zhu X, Helpman L, Papini S, Schneier F, Markowitz JC, Van Meter PE, Lindquist MA, Wager TD, Neria Y: Altered resting state functional connectivity of fear and reward circuitry in comorbid PTSD and major depression. Depress Anxiety 34(7):641-650, 2017.

Choe AS, Nebel MB, Barber AD, Cohen JR, Xu Y, Pekar JJ, Caffo B, Lindquist MA: Comparing test-retest reliability of dynamic functional connectivity methods. Neuroimage 158:155-175, 2017.

Ammann C, Lindquist MA, Celnik PA: Response variability of different anodal transcranial direct current stimulation intensities across multiple sessions. Brain Stimul 10(4):757-763, 2017.

Eklund A, Lindquist MA, Villani M: A Bayesian heteroscedastic GLM with application to fMRI data with motion spikes. Neuroimage 155:354-369, 2017.

Yahyavi-Firouz-Abadi N, Pillai JJ, Lindquist MA, Calhoun VD, Agarwal S, Airan RD, Caffo B, Gujar SK, Sair HI: Presurgical brain mapping of the ventral somatomotor network in patients with brain tumors using testing-state fMRI. AJNR Am J Neuroradiol 38(5):1006-1012, 2017.

Huang L, Reiss PT, Xiao L, Zipunnikov V, Lindquist MA, Crainiceanu CM: Two-way principal component analysis for matrix-variate data, with an application to functional magnetic resonance imaging data. Biostatistics 18(2):214-229, 2017.

Reddan MC, Lindquist MA, Wager TD: Effect size estimation in neuroimaging. JAMA Psychiatry 74(3):207-208, 2017.

Chen S, Huang L, Qiu H, Nebel MB, Mostofsky SH, Pekar JJ, Lindquist MA, Eloyan A, Caffo BS: Parallel group independent component analysis for massive fMRI data sets. PLoS One 12(3):e0173496, 2017.

Woo CW, Chang LJ, Lindquist MA, Wager TD: Building better biomarkers: brain models in translational neuroimaging. Nat Neurosci 20(3):365-377, 2017.

Woo CW, Schmidt L, Krishnan A5, Jepma M, Roy M, Lindquist MA, Atlas LY, Wager TD: Quantifying cerebral contributions to pain beyond nociception. Nat Commun 8:14211, 2017.

Kudela M, Harezlak J, Lindquist MA: Assessing uncertainty in dynamic functional connectivity. Neuroimage 149:165-177, 2017.

Chen S, Liu K, Yang Y, Lee S, Lindquist M, Caffo BS, Vogelstein J: An M-estimator for reduced-rank system identification. Pattern Recogn Lett 86:76-81, 2017.

Lindquist MA, Krishnan A, Lopez-Sola M, Jepma M, Woo CW, Koban L, Roy M, Atlas LY, Schmidt L, Chang LJ, Reynolds Losin EA, Eisenbarth H, Ashar YK, Delk E, Wager TD: Group-regularized individual prediction: theory and application to pain. Neuroimage 145(Pt B):274-287, 2017.

Blanco C, Wall MM, Lindquist MA, Rodriguez-Fernandez JM, Franco S, Wang S, Olfson M: Generalizability of neuroimaging studies in 5 common psychiatric disorders based on the National Epidemiologic Survey on Alcohol and Related Conditions (NESARC). J Clin Psychiatry 77(12):e1618-e1625, 2016.

Helpman L, Marin MF, Papini S, Zhu X, Sullivan GM, Schneier F, Neria M, Shvil E, Malaga Aragon MJ, Markowitz JC, Lindquist MA, Wager T, Milad M, Neria Y: Neural changes in extinction recall following prolonged exposure treatment for PTSD: A longitudinal fMRI study. Neuroimage Clin 12:715-723, 2016.

Sebastian R, Long C, Purcell JJ, Faria AV, Lindquist M, Jarso S, Race D, Davis C, Posner J, Wright A, Hillis AE: Imaging network level language recovery after left PCA stroke. Restor Neurol Neurosci 34(4):473-489, 2016.

Lindquist MA: From CT to fMRI: Larry Shepp's impact on medical imaging. Annu Rev Stat Appl 3:1-19, 2016.

Agarwal S, Sair HI, Airan R, Hua J, Jones CK, Heo HY, Olivi A, Lindquist MA, Pekar JJ, Pillai JJ: Demonstration of brain tumor-induced neurovascular uncoupling in resting-state fMRI at ultrahigh field. Brain Connect 6(4):267-72, 2016.

Sair HI, Yahyavi-Firouz-Abadi N, Calhoun VD, Airan RD, Agarwal S, Intrapiromkul J, Choe AS, Gujar SK, Caffo B, Lindquist MA, Pillai JJ: Presurgical brain mapping of the language network in patients with brain tumors using resting-state fMRI: Comparison with task fMRI. Hum Brain Mapp 37(3):913-923, 2016.

Choe AS, Jones CK, Joel SE, Muschelli J, Belegu V, Caffo BS, Lindquist MA, van Zijl PC, Pekar JJ: Reproducibility and temporal structure in weekly resting-state fMRI over a period of 3.5 years. PLoS One 10(10):e0140134, 2015.

Bedi G, Lindquist MA, Haney M: An fMRI-based neural signature of decisions to smoke cannabis. Neuropsychopharmacology 40(12):2657-65, 2015.

Lindquist MA, Wager TD: Meta-analyses in functional neuroimaging. Brain Mapping 1:661-665, 2015.

Xu Y, Lindquist MA: Dynamic connectivity detection: an algorithm for determining functional connectivity change points in fMRI data. Front Neurosci 9:285, 2015.

Muschelli J, Sweeney E, Lindquist M, Crainiceanu C: fslr: connecting the FSL software with R. R Journal 7(1):163-175, 2015.

Wong AL, Lindquist MA, Haith AM, Krakauer JW: Explicit knowledge enhances motor vigor and performance: motivation versus practice in sequence tasks. J Neurophysiol 114(1):219-32, 2015.

Hannawi Y, Lindquist MA, Caffo BS, Sair HI, Stevens RD: Resting brain activity in disorders of consciousness: A systematic review and meta-analysis. Neurology 84(12):1272-1280, 2015.

Mejia AF, Nebel MB, Shou H, Crainiceanu CM, Pekar JJ, Mostofsky S, Caffo B, Lindquist MA: Improving reliability of subject-level resting-state fMRI parcellation with shrinkage estimators. Neuroimage 112:14-29, 2015.

Lindquist MA, Mejia A: Zen and the art of multiple comparisons. Psychosom Med 77(2):114-25, 2015.

 

 

Thomas Louis   (go to top of document)

 

Henderson NC, Louis TA, Rosner GL, Varadhan R: Individualized treatment effects with censored data via fully nonparametric Bayesian accelerated failure time models. Biostatistics 21(1):50-68, 2020.

Daumit GL, Janssen EM, Jerome GJ, Dalcin AT, Charleston J, Clark JM, Coughlin JW, Yeh HC, Miller ER, Durkin N, Louis TA, Frick KD, Wang NY, Appel LJ: Cost of behavioral weight loss programs implemented in clinical practice: The POWER trial at Johns Hopkins. Transl Behav Med 10(1):103-113, 2020.

Franco C, Little RJA, Louis TA, Slud EV: Comparative study of confidence intervals for proportions in complex sample surveys. J Surv Stat Methodol 7(3):334-364, 2019.

Datta A, Lin W, Rao A, Diouf D, Kouame A, Edwards JK, Bao L, Louis TA, Baral S: Bayesian estimation of MSM population size in Cote d'Ivoire. Stat Public Policy 6(1):1-13, 2019.

Rosenblum MA, Miller P, Reist B, Stuart EA, Thieme M, Louis TA: Adaptive design in surveys and clinical trials: similarities, differences and opportunities for crossfertilization. JRSS-A 182(3):963-982, 2019.

Datta A, Lin W, Rao A, Diouf D, Kouame A, Edwards JF, Bao L, Louis TA, Baral A: Bayesian estimation of MSM population size in Cote d'Ivoire. Statistics and Public Policy 6(1):1-13, 2019.

Brownstein NC, Louis TA, O'Hagan A, Pendergast J: The role of expert judgment in statistical inference and evidence-based decision-making. The American Statistician 73(S1):56-68, 2019.

Li Q, Louis TA, Liu L, Wang C, Tsui AO: Subnational estimation of modern contraceptive prevalence in five sub-Saharan African countries: a Bayesian hierarchical approach. BMC Public Health 19(1):216, 2019.

Wang C, Louis TA, Henderson NC, Weiss CO, Varadhan R: beanz: An R package for Bayesian analysis of heterogeneous treatment effects with a graphical user interface. J Stat Software 85(7):JSSv085i07, 2018.

Hemorrhagic Stroke Academia Industry (HEADS) Roundtable Participants (includes Louis T): Basic and translational research in intracerebral hemorrhage: limitations, priorities, and recommendations. Stroke 49(5):1308-1314, 2018.

Hemorrhagic Stroke Academia Industry (HEADS) Roundtable Participants (includes Louis T): Unmet needs and challenges in clinical research of intracerebral hemorrhage. Stroke 49(5):1299-1307, 2018.

Allon M, Imrey PB, Cheung AK, Radeva M, Alpers CE, Beck GJ, Dember LM, Farber A, Greene T, Himmelfarb J, Huber TS, Kaufman JS, Kusek JW, Roy-Chaudhury P, Robbin ML, Vazquez MA, Feldman HI, Hemodialysis Fistula Maturation (HFM) Study Group (includes Louis T): Relationships between clinical processes and arteriovenous fistula cannulation and maturation: a multicenter prospective cohort study. Am J Kidney Dis 71(5):677-689, 2018.

Keiding N, Louis TA: Web-based enrollment and other types of self-selection in surveys and studies: consequences for generalizability. Annu Rev Stat Appl 5:25-47, 2018.

Fojo AT, Kendall EA, Kasaie P, Shrestha S, Louis TA, Dowdy DW: Mathematical modeling of "chronic" infectious diseases: unpacking the black box. Open Forum Infect Dis 4(4):ofx172, 2017.

Lum KJ, Sundaram R, Barr DB, Louis TA, Buck Louis GM: Perfluoroalkyl chemicals, menstrual cycle length, and fecundity: findings from a prospective pregnancy study. Epidemiology 28(1):90-98, 2017.

Normand SLT, Ash AS, Fienberg SE, Stukel TA, Utts J, Louis TA: League tables for hospital comparisons. Annu Rev Stat Appl 3:21-50, 2016.

Henderson NC, Louis TA, Wang C, Varadhan R: Bayesian analysis of heterogeneous treatment effects for patient-centered outcomes research. Health Serv Outcomes Res Methodol 16(4):213-233, 2016.

Lum KJ, Sundaram R, Buck Louis GM, Louis TA: A Bayesian joint model of menstrual cycle length and fecundity. Biometrics 72(1):193-203, 2016.

Holbrook JT, Sugar EA, Burke AE, Vitale AT, Thorne JE, Davis JL, Jabs DA, Multicenter Uveitis Steroid Treatment (MUST) Trial Research Group (includes Louis T): Dissociations of the fluocinolone acetonide implant: the Multicenter Uveitis Steroid Treatment (MUST) Trial and follow-up study. Am J Ophthalmol 164:29-36, 2016.

Keiding N, Louis TA: Perils and potentials of self-selected entry to epidemiological studies and surveys. JRSS-A 179(2):319-376, 2016.

Sen HN, Abreu FM, Louis TA, Sugar EA, Altaweel MM, Elner SG, Holbrook JT, Jabs DA, Kim RY, Kempen JH, Multicenter Uveitis Steroid Treatment (MUST) Trial and Follow-up Study Research Group: Cataract surgery outcomes in uveitis: the Multicenter Uveitis Steroid Treatment Trial. Ophthalmology 123(1):183-90, 2016.

Tomkins-Netzer O, Lightman S, Drye L, Kempen J, Holland GN, Rao NA, Stawell RJ, Vitale A, Jabs DA, Multicenter Uveitis Steroid Treatment Trial Research Group (includes Louis T): Outcome of treatment of uveitic macular edema: The Multicenter Uveitis Steroid Treatment Trial 2-year results. Ophthalmology 122(11):2351-9, 2015.

Multicenter Uveitis Steroid Treatment (MUST) Trial Research Group (includes Louis T), Kempen JH, Altaweel MM, Drye LT, Holbrook JT, Jabs DA, Sugar EA, Thorne JE: Benefits of systemic anti-inflammatory therapy versus fluocinolone acetonide intraocular implant for intermediate uveitis, posterior uveitis, and panuveitis: Fifty-four-month results of the Multicenter Uveitis Steroid Treatment (MUST) Trial and Follow-up Study. Ophthalmology 122(10):1967-75, 2015.

Multicenter Uveitis Steroid Treatment (MUST) Trial Follow-up Study Research Group (includes Louis T): Quality of life and risks associated with systemic anti-inflammatory therapy versus fluocinolone acetonide intraocular implant for intermediate uveitis, posterior uveitis, or panuveitis: Fifty-four-month results of the Multicenter Uveitis Steroid Treatment Trial and Follow-up Study. Ophthalmology 122(10):1976-86, 2015.

Kempen JH, Van Natta ML, Altaweel MM, Dunn JP, Jabs DA, Lightman SL, Thorne JE, Holbrook JT, Multicenter Uveitis Steroid Treatment (MUST) Trial Research Group (includes Louis T), Multicenter Uveitis Steroid Treatment MUST Trial Research Group: Factors predicting visual acuity outcome in intermediate, posterior, and panuveitis: the Multicenter Uveitis Steroid Treatment (MUST) Trial. Am J Ophthalmol 160(6):1133-1141.e9, 2015.

Farber A, Tan TW, Hu B, Dember LM, Beck GJ, Dixon BS, Kusek JW, Feldman HI, Dialysis Access Consortium (DAC) Study Group, Dialysis Access Consortium DAC Study Group (includes Louis T): The effect of location and configuration on forearm and upper arm hemodialysis arteriovenous grafts. J Vasc Surg 62(5):1258-65, 2015.

Louis TA: Expand the toolkit! Am J Bioeth 15(4):40-2, 2015.

Lum KJ, Sundaram R, Louis TA: Accounting for length-bias and selection effects in estimating the distribution of menstrual cycle length. Biostatistics 16(1):113-28, 2015.

Jerome GJ, Alavi R, Daumit GL, Wang NY, Durkin N, Yeh HC, Clark JM, Dalcin A, Coughlin JW, Charleston J, Louis TA, Appel LJ: Willingness to pay for continued delivery of a lifestyle-based weight loss program: The Hopkins POWER trial. Obesity 23(2):282-5, 2015.

 

 

Aidan McDermott  (go to top of document)

 

Duan R, Cao M, Ning Y, Zhu M, Zhang B, McDermott A, Chu H, Zhou X, Moore JH, Ibrahim JG, Scharfstein DO, Chen Y: Global identifiability of latent class models with applications to diagnostic test accuracy studies: A Grobner basis approach. Biometrics 76(1):98-108, 2020.

Scharfstein DO, McDermott A: Global sensitivity analysis of clinical trials with missing patient-reported outcomes. Stat Methods Med Res 28(5):1439-1456, 2019.

Scharfstein D, McDermott A, Diaz I, Carone M, Lunardon N, Turkoz I: Global sensitivity analysis for repeated measures studies with informative drop-out: A semi-parametric approach. Biometrics 74(1):207-219, 2018.

Shafi T, Sozio SM, Luly J, Bandeen-Roche KJ, St Peter WL, Ephraim PL, McDermott A, Herzog CA, Crews DC, Scialla JJ, Tangri N, Miskulin DC, Michels WM, Jaar BG, Zager PG, Meyer KB, Wu AW, Boulware LE, DEcIDE Network Patient Outcomes in End Stage Renal Disease Study Investigators: Antihypertensive medications and risk of death and hospitalizations in US hemodialysis patients: Evidence from a cohort study to inform hypertension treatment practices. Medicine 96(5):e5924, 2017.

Scharfstein D, Rotnitzky A, Abraham M, McDermott A, Chaisson R, Geiter L: On the analysis of tuberculosis studies with intermittent missing sputum data. Ann Appl Stat 9(4):2215-2236, 2015.

Tangri N, Miskulin DC, Zhou J, Bandeen-Roche K, Michels WM, Ephraim PL, McDermott A, Crews DC, Scialla JJ, Sozio SM, Shafi T, Jaar BG, Meyer K, Ebony Boulware L, DEcIDE Network Patient Outcomes in End-Stage Renal Disease Study Investigators: Effect of intravenous iron use on hospitalizations in patients undergoing hemodialysis: a comparative effectiveness analysis from the DEcIDE-ESRD study. Nephrol Dial Transplant 30(4):667-75, 2015.

Lee J, Ding R, Zeger SL, McDermott A, Habteh-Yimer G, Chin M, Balder RS, McCarthy ML: Impact of subsidized health insurance coverage on emergency department utilization by low-income adults in Massachusetts. Med Care 53(1):38-44, 2015.

 

 

John McGready   (go to top of document)

 

Merrill KG, Campbell JC, Decker MR, McGready J, Burke VM, Mwansa JK, Miti S, Frimpong C, Kennedy CE, Denison JA: Prevalence of physical and sexual violence and psychological abuse among adolescents and young adults living with HIV in Zambia. PLoS One 15(6):e0235203, 2020.

Beres LK, Merrill KG, McGready J, Denison JA, Schwartz S, Sikazwe I, Decker MR: Intimate partner violence polyvictimisation and HIV among coupled women in Zambia: Analysis of a population-based survey. Glob Public Health 15(4):558-570, 2020.

Hoover-Fong J, Alade AY, Ain M, Berkowitz I, Bober M, Carter E, Hecht J, Hoerschemeyer D, Krakow D, MacCarrick G, Mackenzie WG, Mendoza R, Okenfuss E, Popplewell D, Raggio C, Schulze K, McGready J: Blood pressure in adults with short stature skeletal dysplasias. Am J Med Genet A 182(1):150-161, 2020.

Collaco JM, Appel LJ, McGready J, Cutting GR: The relationship of lung function with ambient temperature. PLoS One 13(1):e0191409, 2018.

Mammen JS, McGready J, Ladenson PW, Simonsick EM: Unstable thyroid function in older adults is caused by alterations in both thyroid and pituitary physiology and is associated with increased mortality. Thyroid 27(11):1370-1377, 2017.

Pauls LA, Johnson-Paben R, McGready J, Murphy JD, Pronovost PJ, Wu CL: The weekend effect in hospitalized patients: a meta-analysis. J Hosp Med 12(9):760-766, 2017.

Hoover-Fong J, McGready J, Schulze K, Alade AY, Scott CI: A height-for-age growth reference for children with achondroplasia: expanded applications and comparison with original reference data. Am J Med Genet A 173(5):1226-1230, 2017.

Collaco JM, Blackman SM, Raraigh KS, Corvol H, Rommens JM, Pace RG, Boelle PY, McGready J, Sosnay PR, Strug LJ, Knowles MR, Cutting GR: Sources of variation in sweat chloride measurements in cystic fibrosis. Am J Respir Crit Care Med 194(11):1375-1382, 2016.

Kansal K, Mareddy M, Sloane KL, Minc AA, Rabins PV, McGready JB, Onyike CU: Survival in frontotemporal dementia phenotypes: a meta-analysis. Dement Geriatr Cogn Disord 41(1-2):109-22, 2016.

Gibbs KD Jr, McGready J, Griffin K: Career development among American biomedical postdocs. CBE Life Sci Educ 14(4). pii: ar44, 2015.

Tversky JR, Chelladurai Y, McGready J, Hamilton RG: Performance and pain tolerability of current diagnostic allergy skin prick test devices. J Allergy Clin Immunol Pract 3(6):888-93, 2015.

Mammen JS, McGready J, Oxman R, Chia CW, Ladenson PW, Simonsick EM: Thyroid hormone therapy and risk of thyrotoxicosis in community-resident older adults: findings from the Baltimore Longitudinal Study of Aging. Thyroid 25(9):979-986, 2015.

Zackowski KM, Wang JI, McGready J, Calabresi PA, Newsome SD: Quantitative sensory and motor measures detect change over time and correlate with walking speed in individuals with multiple sclerosis. Mult Scler Relat Disord 4(1):67-74, 2015.

 

 

 

John Muschelli   (go to top of document)

 

Hansen BM, Ullman N, Muschelli J, Norrving B, Dlugash R, Avadhani R, Awad I, Zuccarello M, Ziai WC, Hanley DF, Thompson RE, Lindgren A, MISTIE and CLEAR Investigators: Relationship of white matter lesions with intracerebral hemorrhage expansion and functional outcome: MISTIE II and CLEAR III. Neurocrit Care 33(2):516-524, 2020.

Hannawi Y, Muschelli J, Mulder M, Sharrock M, Storm C, Leithner C, Crainiceanu CM, Stevens RD: Postcardiac arrest neurological prognostication with quantitative regional cerebral densitometry. Resuscitation 154:101-109, 2020.

Ryan SM, Vestal B, Maier LA, Carlson NE, Muschelli J, 2020. Template creation for high-resolution computed tomography scans of the lung in R software. Acad Radiol 27(8):e204-e215.

Valcarcel AM, Muschelli J, Pham DL, Martin ML, Yushkevich P, Brandstadter R, Patterson KR, Schindler MK, Calabresi PA, Bakshi R, Shinohara RT: TAPAS: A Thresholding Approach for Probability Map Automatic Segmentation in Multiple Sclerosis. Neuroimage Clin 27:102256, 2020.

Rothstein JD, Caulfield LE, Broaddus-Shea ET, Muschelli J, Gilman RH, Winch PJ: "The doctor said formula would help me": Health sector influences on use of infant formula in peri-urban Lima, Peru. Soc Sci Med 244:112324, 2020.

Ding T, Cohen AD, O'Connor EE, Karim HT, Crainiceanu A, Muschelli J, Lopez O, Klunk WE, Aizenstein HJ, Krafty R, Crainiceanu CM, Tudorascu DL: An improved algorithm of white matter hyperintensity detection in elderly adults. Neuroimage Clin 25:102151, 2019.

Muschelli J: Recommendations for processing head CT data. Front Neuroinform 13:61, 2019.

Muschelli J, Gherman A, Fortin JP, Avants B, Whitcher B, Clayden JD, Caffo BS, Crainiceanu CM: Neuroconductor: an R platform for medical imaging analysis. Biostatistics 20(2):218-239, 2019.

Valcarcel AM, Linn KA, Khalid F, Vandekar SN, Tauhid S, Satterthwaite TD, Muschelli J, Martin ML, Bakshi R, Shinohara RT: A dual modeling approach to automatic segmentation of cerebral T2 hyperintensities and T1 black holes in multiple sclerosis. Neuroimage Clin 20:1211-1221, 2018.

Commowick O, Istace A, Kain M, Laurent B, Leray F, Simon M, Pop SC, Girard P, Ameli R, Ferre JC, Kerbrat A, Tourdias T, Cervenansky F, Glatard T, Beaumont J, Doyle S, Forbes F, Knight J, Khademi A, Mahbod A, Wang C, McKinley R, Wagner F, Muschelli J, Sweeney E, et al: Objective evaluation of multiple sclerosis lesion segmentation using a data management and processing infrastructure. Sci Rep 8(1):13650, 2018.

Muschelli J, Sweeney E, Crainiceanu CM: freesurfer: Connecting the Freesurfer software with R. F1000Res 7:599, 2018.

Valcarcel AM, Linn KA, Vandekar SN, Satterthwaite TD, Muschelli J, Calabresi PA, Pham DL, Martin ML, Shinohara RT: MIMoSA: an automated method for intermodal segmentation analysis of multiple sclerosis brain lesions. J Neuroimaging 28(4):389-398, 2018.

Kickingereder P, Neuberger U, Bonekamp D, Piechotta PL, Gotz M, Wick A, Sill M, Kratz A, Shinohara RT, Jones DTW, Radbruch A, Muschelli J, Unterberg A, Debus J, Schlemmer HP, Herold-Mende C, Pfister S, von Deimling A, Wick W, Capper D, Maier-Hein KH, Bendszus M: Radiomic subtyping improves disease stratification beyond key molecular, clinical, and standard imaging characteristics in patients with glioblastoma. Neuro Oncol 20(6):848-857, 2018.

Haakonsen Smith C, Turbitt E, Muschelli J, Leonard L, Lewis KL, Freedman B, Muratori M, Biesecker BB: Feasibility of coping effectiveness training for caregivers of children with autism spectrum disorder: a genetic counseling intervention. J Genet Couns 27(1):252-262, 2018.

Muschelli J, Sweeney EM, Ullman NL, Vespa P, Hanley DF, Crainiceanu CM: PItcHPERFeCT: Primary Intracranial Hemorrhage Probability Estimation using Random Forests on CT. Neuroimage Clin 14:379-390, 2017.

Hanley DF, Lane K, McBee N..., Diener-West M, Muschelli J, Betz JF, Thompson CB, Sugar EA, Yenokyan G, ..., Rosenblum M, Thompson RE, et al: Thrombolytic removal of intraventricular haemorrhage in treatment of severe stroke: results of the randomised, multicentre, multiregion, placebo-controlled CLEAR III trial. Lancet 389(10069):603-611, 2017.

Kickingereder P, Gotz M, Muschelli J, Wick A, Neuberger U, Shinohara RT, Sill M, Nowosielski M, Schlemmer HP, Radbruch A, Wick W, Bendszus M, Maier-Hein KH, Bonekamp D: Large-scale radiomic profiling of recurrent glioblastoma identifies an imaging predictor for stratifying anti-angiogenic treatment response. Clin Cancer Res 22(23):5765-5771, 2016.

Tudorascu DL, Karim HT, Maronge JM, Alhilali L, Fakhran S, Aizenstein HJ, Muschelli J, Crainiceanu CM: Reproducibility and bias in healthy brain segmentation: comparison of two popular neuroimaging platforms. Front Neurosci 10:503, 2016.

Maier O, Menze BH, ..., Muschelli J, et al: ISLES 2015 - A public evaluation benchmark for ischemic stroke lesion segmentation from multispectral MRI. Med Image Anal 35:250-269, 2017.

Hanley DF, Thompson RE, Muschelli J, Rosenblum M, ..., Thompson CB, Yenokyan G, Huang E, et al: Safety and efficacy of minimally invasive surgery plus alteplase in intracerebral haemorrhage evacuation (MISTIE): a randomised, controlled, open-label, phase 2 trial. Lancet Neurol 15(12):1228-1237, 2016.

Fortin JP, Sweeney EM, Muschelli J, Crainiceanu CM, Shinohara RT, Alzheimer's Disease Neuroimaging Initiative: Removing inter-subject technical variability in magnetic resonance imaging studies. Neuroimage 132:198-212, 2016.

Bundy DG, Muschelli J, Clemens GD, Strouse JJ, Thompson RE, Casella JF, Miller MR: Preventive care delivery to young children with sickle cell disease. J Pediatr Hematol Oncol 38(4):294-300, 2016.

Webb AJ, Ullman NL, Morgan TC, Muschelli J, Kornbluth J, Awad IA, Mayo S, Rosenblum M, Ziai W, Zuccarrello M, Aldrich F, John S, Harnof S, Lopez G, Broaddus WC, Wijman C, Vespa P, Bullock R, Haines SJ, Cruz-Flores S, Tuhrim S, Hill MD, Narayan R, Hanley DF, MISTIE and CLEAR Investigators: Accuracy of the ABC/2 score for intracerebral hemorrhage: systematic review and analysis of MISTIE, CLEAR-IVH, and CLEAR III. Stroke 46(9):2470-6, 2015.

Sweeney EM, Shinohara RT, Dewey BE, Schindler MK, Muschelli J, Reich DS, Crainiceanu CM, Eloyan A: Relating multi-sequence longitudinal intensity profiles and clinical covariates in incident multiple sclerosis lesions. Neuroimage Clin 10:1-17, 2015.

Muschelli J, Ullman NL, Sweeney EM, Eloyan A, Martin N, Vespa P, Hanley DF, Crainiceanu CM: Quantitative intracerebral hemorrhage localization. Stroke 46(11):3270-3, 2015.

Muschelli J, Sweeney E, Lindquist M, Crainiceanu C: fslr: connecting the FSL software with R. R Journal 7(1):163-175, 2015.

Muschelli J, Ullman NL, Mould WA, Vespa P, Hanley DF, Crainiceanu CM: Validated automatic brain extraction of head CT images. Neuroimage 114:379-85, 2015.

Sharer E, Crocetti D, Muschelli J, Barber AD, Nebel MB, Caffo BS, Pekar JJ, Mostofsky SH: Neural correlates of visuomotor learning in autism. J Child Neurol 30(14):1877-86, 2015.

Choe AS, Jones CK, Joel SE, Muschelli J, Belegu V, Caffo BS, Lindquist MA, van Zijl PC, Pekar JJ: Reproducibility and temporal structure in weekly resting-state fMRI over a period of 3.5 years. PLoS One 10(10):e0140134, 2015.

Gaddis A, Rosch KS, Dirlikov B, Crocetti D, MacNeil L, Barber AD, Muschelli J, Caffo B, Pekar JJ, Mostofsky SH: Motor overflow in children with attention-deficit/hyperactivity disorder is associated with decreased extent of neural activation in the motor cortex. Psychiatry Res 233(3):488-95, 2015.

 

 

 

Akihiko Nishimura (go to top of document)

 

Ji X, Zhang Z, Holbrook A, Nishimura A, Baele G, Rambaut A, Lemey P, Suchard MA: Gradients do grow on trees: a linear-time O(N)-dimensional gradient for statistical phylogenetics. Mol Biol Evol 37(10):3047-3060, 2020.

Duan LL, Young AL, Nishimura A, Dunson DB: Bayesian constraint relaxation. Biometrika 107(1):191-204, 2020.

 

 

Elizabeth Ogburn  (go to top of document)

 

Kimmel SE, Califf RM, Dean NE, Goodman SN, Ogburn EL: Editorial: COVID-19 clinical trials: a teachable moment for improving our research infrastructure and relevance. Ann Intern Med 173(8):652-653, 2020.

Ogburn EL, Shpitser I, Lee Y: Causal inference, social networks and chain graphs. JRSS-A 183(4):1659-1676, 2020.

Ogburn EL, Bierer BE, Brookmeyer R, Choirat C, Dean NE, De Gruttola V, Ellenberg SS, Halloran ME, Hanley DF Jr, Lee JK, Wang R, Scharfstein DO: Comment: Aggregating data from COVID-19 trials. Science 368(6496):1198-1199, 2020.

Wang B, Ogburn EL, Rosenblum M: Analysis of covariance in randomized trials: More precision and valid confidence intervals, without model assumptions. Biometrics 75(4):1391-1400, 2019.

Solomon SS, Solomon S, McFall AM, Srikrishnan AK, Anand S, Verma V, Vasudevan CK, Balakrishnan P, Ogburn EL, Moulton LH, Kumar MS, Sachdeva KS, Laeyendecker O, Celentano DD, Lucas GM, Mehta SH, Indian National Collaboration on AIDS Study: Integrated HIV testing, prevention, and treatment intervention for key populations in India: a cluster-randomised trial. Lancet HIV 6(5):e283-e296, 2019.

Casey JA, Karasek D, Ogburn EL, Goin DE, Dang K, Braveman PA, Morello-Frosch R: Retirements of coal and oil power plants in California: association with reduced preterm birth among populations nearby. Am J Epidemiol 187(8):1586-1594, 2018.

Casey JA, Gemmill A, Karasek D, Ogburn EL, Goin DE, Morello-Frosch R: Increase in fertility following coal and oil power plant retirements in California. Environ Health 17(1):44, 2018.

Chen OY, Crainiceanu C, Ogburn EL, Caffo BS, Wager TD, Lindquist MA: High-dimensional multivariate mediation with application to neuroimaging data. Biostatistics 19(2):121-136, 2018.

Casey JA, Morello-Frosch R, Mennitt DJ, Fristrup K, Ogburn EL, James P: Race/ethnicity, socioeconomic status, residential segregation, and spatial variation in noise exposure in the contiguous United States. Environ Health Perspect 125(7):077017, 2017.

Ogburn EL, VanderWeele TJ: Vaccines, contagion, and social networks. Ann Appl Stat 11(2):919-948, 2017.

Tsai AC, Kakuhikire B, Perkins JM, Vorechovska D, McDonough AQ, Ogburn EL, Downey JM, Bangsberg DR: Measuring personal beliefs and perceived norms about intimate partner violence: Population-based survey experiment in rural Uganda. PLoS Med 14(5):e1002303, 2017.

Gittelsohn J, Jock B, Redmond L, Fleischhacker S, Eckmann T, Bleich SN, Loh H, Ogburn E, Gadhoke P, Swartz J, Pardilla M, Caballero B: OPREVENT2: Design of a multi-institutional intervention for obesity control and prevention for American Indian adults. BMC Public Health 17(1):105, 2017.

Solomon SS, Lucas GM, Celentano DD, McFall AM, Ogburn E, Moulton LH, Srikrishnan AK, Kumar MS, Anand S, Solomon S, Mehta SH: Design of the Indian NCA study (Indian national collaboration on AIDS): a cluster randomized trial to evaluate the effectiveness of integrated care centers to improve HIV outcomes among men who have sex with men and persons who inject drugs in India. BMC Health Serv Res 16(1):652, 2016.

Rasmussen SG, Ogburn EL, McCormack M, Casey JA, Bandeen-Roche K, Mercer DG, Schwartz BS: Association between unconventional natural gas development in the Marcellus shale and asthma exacerbations. JAMA Intern Med 176(9):1334-43, 2016.

Ogburn EL, Zeger SL: Statistical reasoning and methods in epidemiology to promote individualized health: in celebration of the 100th anniversary of the Johns Hopkins Bloomberg School of Public Health. Am J Epidemiol 183(5):427-34, 2016.

Casey JA, Savitz DA, Rasmussen SG, Ogburn EL, Pollak J, Mercer DG, Schwartz BS: Unconventional natural gas development and birth outcomes in Pennsylvania, USA. Epidemiology 27(2):163-72, 2016.

Staples PC, Ogburn EL, Onnela JP: Incorporating contact network structure in cluster randomized trials. Sci Rep 5:17581, 2015.

Casey JA, Ogburn EL, Rasmussen SG, Irving JK, Pollak J, Locke PA, Schwartz BS: Predictors of indoor radon concentrations in Pennsylvania, 1989-2013. Environ Health Perspect 123(11):1130-7, 2015.

Solomon SS, Mehta SH, Srikrishnan AK, Vasudevan CK, Mcfall AM, Balakrishnan P, Anand S, Nandagopal P, Ogburn EL, Laeyendecker O, Lucas GM, Solomon S, Celentano DD: High HIV prevalence and incidence among MSM across 12 cities in India. AIDS 29(6):723-31, 2015.

Lucas GM, Solomon SS, Srikrishnan AK, Agrawal A, Iqbal S, Laeyendecker O, McFall AM, Kumar MS, Ogburn EL, Celentano DD, Solomon S, Mehta SH: High HIV burden among people who inject drugs in 15 Indian cities. AIDS 29(5):619-28, 2015.

Ogburn EL, Rotnitzky A, Robins JM: Doubly robust estimation of the local average treatment effect curve. JRSS-B 77(2):373-396, 2015.

 

 

Roger Peng   (go to top of document)

Anderson GB, Ferreri J, Al-Hamdan M, Crosson W, Schumacher A, Guikema S, Quiring S, Eddelbuettel D, Yan M, Peng RD: Assessing United States county-level exposure for research on tropical cyclones and human health. Environ Health Perspect 128(10):107009, 2020.

McGowan EC, Keller JP, Dellon ES, Peng R, Keet CA: Prevalence and geographic distribution of pediatric eosinophilic esophagitis in the 2012 US Medicaid population. J Allergy Clin Immunol Pract 8(8):2796-2798, 2020.

Jabre NA, Keet CA, McCormack M, Peng R, Balcer-Whaley S, Matsui EC: Material hardship and indoor allergen exposure among low-income, urban, minority children with persistent asthma. J Community Health 45(5):1017-1026, 2020.

Dunlop JH, Keller JP, Peng RD, Keet CA: The effect of season of birth on atopic dermatitis and food allergy. Ann Allergy Asthma Immunol 125(2):221-223, 2020.

Ahmed A, Sadreameli SC, Curtin-Brosnan J, Grant T, Phipatanakul W, Perzanowski M, Balcer-Whaley S, Peng R, Newman M, Cunningham A, Divjan A, Bollinger ME, Wise RA, Miller R, Chew G, Matsui EC: Do baseline asthma and allergic sensitization characteristics predict responsiveness to mouse allergen reduction? J Allergy Clin Immunol Pract 8(2):596-602, 2020.

Grant T, Phipatanakul W, Perzanowski M, Balcer-Whaley S, Peng RD, Curtin-Brosnan J, Newman M, Cunningham A, Divjan A, Bollinger ME, Wise RA, Matsui EC: Reduction in mouse allergen exposure is associated with greater lung function growth. J Allergy Clin Immunol 145(2):646-653, 2020.

Tsou PY, McCormack MC, Matsui EC, Peng RD, Diette GB, Hansel NN, Davis MF: The effect of dog allergen exposure on asthma morbidity among inner-city children with asthma. Pediatr Allergy Immunol 31(2):210-213, 2020.

Liu JC, Peng RD: The impact of wildfire smoke on compositions of fine particulate matter by ecoregion in the Western US. J Expo Sci Environ Epidemiol 29(6):765-776, 2019.

Nori-Sarma A, Anderson GB, Rajiva A, ShahAzhar G, Gupta P, Pednekar MS, Son JY, Peng RD, Bell ML: The impact of heat waves on mortality in Northwest India. Environ Res 176:108546, 2019.

Patil P, Peng RD, Leek JT: A visual tool for defining reproducibility and replicability. Nat Hum Behav 3(7):650-652, 2019.

Colston JM, Zaitchik B, Kang G, Penataro Yori P, Ahmed T, Lima A, Turab A, Mduma E, Sunder Shrestha P, Bessong P, Peng RD, Black RE, Moulton LH, Kosek MN: Use of earth observation-derived hydrometeorological variables to model and predict rotavirus infection (MAL-ED): a multisite cohort study. Lancet Planet Health 3(6):e248-e258, 2019. 

Matsui EC, Pollack CE, Peng RD, Keet CA: Closing the door on social determinants of health and asthma disparities: Not so fast. J Allergy Clin Immunol Pract 7(6):2101-2102, 2019.

Yan M, Wilson A, Bell ML, Peng RD, Sun Q, Pu W, Yin X, Li T, Anderson GB: The shape of the concentration-response association between fine particulate matter pollution and human mortality in Beijing, China, and its implications for health impact assessment. Environ Health Perspect 127(6):67007, 2019.

Matsui EC, Adamson AS, Peng RD: Time's up to adopt a biopsychosocial model to address racial and ethnic disparities in asthma outcomes. J Allergy Clin Immunol 143(6):2024-2025, 2019.

McGowan EC, Peng R, Salo PM, Zeldin DC, Keet CA: Cockroach, dust mite, and shrimp sensitization correlations in the National Health and Nutrition Examination Survey. Ann Allergy Asthma Immunol 122(5):536-538, 2019.

Raju S, Keet CA, Paulin LM, Matsui EC, Peng RD, Hansel NN, McCormack MC: Rural residence and poverty are independent risk factors for chronic obstructive pulmonary disease in the United States. Am J Respir Crit Care Med 199(8):961-969, 2019.

Wu TD, Perzanowski M, Peng RD, Wise RA, Balcer-Whaley S, Newman M, Cunningham A, Phipatanakul W, Matsui EC, McCormack MC: Validation of the maximum symptom day among children with asthma. J Allergy Clin Immunol 143(2):803-805, 2019.

Wu TD, Brigham EP, Peng R, Koehler K, Rand C, Matsui EC, Diette GB, Hansel NN, McCormack MC: Overweight/obesity enhances associations between secondhand smoke exposure and asthma morbidity in children. J Allergy Clin Immunol Pract 6(6):2157-2159, 2018.

Liu JC, Peng RD: Health effect of mixtures of ozone, nitrogen dioxide, and fine particulates in 85 US counties. Air Qual Atmos Health 11(3):311-324, 2018.

Ferreri JM, Peng RD, Bell ML, Liu Y, Li T, Anderson GB: The January 2013 Beijing "Airpocalypse" and its acute effects on emergency and outpatient visits at a Beijing hospital. Air Qual Atmos Health 11(3):301-309, 2018.

Grant T, Dantzer J, Keet C, Peng R, Paigen BJ, Krevans M, Hagberg K, Curtin-Brosnan J, Shreffler W, Matsui EC: Physician-diagnosed eczema is an independent risk factor for incident mouse skin test sensitization in adults. Allergy Asthma Proc 39(4):311-315, 2018.

Anderson GB, Oleson KW, Jones B, Peng RD: Classifying heatwaves: Developing health-based models to predict high-mortality versus moderate United States heatwaves. Clim Change 146(3-4):439-453, 2018.

Anderson GB, Oleson KW, Jones B, Peng RD: Projected trends in high-mortality heatwaves under different scenarios of climate, population, and adaptation in 82 US communities. Clim Change 146(3-4):455-470, 2018.

Keet CA, Keller JP, Peng RD: Long-term coarse particulate matter exposure is associated with asthma among children in Medicaid. Am J Respir Crit Care Med 197(6):737-746, 2018.

McCormack MC, Paulin LM, Gummerson CE, Peng RD, Diette GB, Hansel NN: Colder temperature is associated with increased COPD morbidity. Eur Respir J 49(6):1601501, 2017.

Berman JD, Ebisu K, Peng RD, Dominici F, Bell ML: Drought and the risk of hospital admissions and mortality in older adults in western USA from 2000 to 2013: a retrospective study. Lancet Planet Health 1(1):e17-e25, 2017.

Liu JC, Wilson A, Mickley LJ, Ebisu K, Sulprizio MP, Wang Y, Peng RD, Yue X, Dominici F, Bell ML: Who among the elderly is most vulnerable to exposure to and health risks of fine particulate matter from wildfire smoke? Am J Epidemiol 186(6):730-735, 2017.

Keet CA, Matsui EC, McCormack MC, Peng RD: Urban residence, neighborhood poverty, race/ethnicity, and asthma morbidity among children on Medicaid. J Allergy Clin Immunol 140(3):822-827, 2017.

Paulin LM, Williams D'L, Peng R, Diette GB, McCormack MC, Breysse P, Hansel NN: 24-h nitrogen dioxide concentration is associated with cooking behaviors and an increase in rescue medication use in children with asthma. Environ Res 159:118-123, 2017.

Hansel NN, Paulin LM, Gassett AJ, Peng RD, et al: Design of the subpopulations and intermediate outcome measures in COPD (SPIROMICS) AIR Study. BMJ Open Respiratory Research 4(1):e000186, 2017.

Peters KO, Williams AL, Abubaker S, Curtin-Brosnan J, McCormack MC, Peng R, Breysse PN, Matsui EC, Hansel NN, Diette GB, Strickland PT: Predictors of polycyclic aromatic hydrocarbon exposure and internal dose in inner city Baltimore children. J Expo Sci Environ Epidemiol 27(3):290-298, 2017.

Bravo MA, Ebisu K, Dominici F, Wang Y, Peng RD, Bell ML: Airborne fine particles and risk of hospital admissions for understudied populations: effects by urbanicity and short-term cumulative exposures in 708 U.S. counties. Environ Health Perspect 125(4):594-601, 2017.

Krall JR, Hackstadt AJ, Peng RD: A hierarchical modeling approach to estimate regional acute health effects of particulate matter sources. Stat Med 36(9):1461-1475, 2017.

Matsui EC, Perzanowski M, Peng RD, Wise RA, Balcer-Whaley S, Newman M, Cunningham A, Divjan A, Bollinger ME, Zhai S, Chew G, Miller RL, Phipatanakul W: Effect of an integrated pest management intervention on asthma symptoms among mouse-sensitized children and adolescents with asthma: a randomized clinical trial. JAMA 317(10):1027-1036, 2017.

Liu JC, Wilson A, Mickley LJ, Dominici F, Ebisu K, Wang Y, Sulprizio MP, Peng RD, Yue X, Son JY, Anderson GB, Bell ML: Wildfire-specific fine particulate matter and risk of hospital admissions in urban and rural counties. Epidemiology 28(1):77-85, 2017.

Liu JC, Mickley LJ, Sulprizio MP, Yue X, Peng RD, Dominici F, Bell ML: Future respiratory hospital admissions from wildfire smoke under climate change in the Western US. Environ Res Lett 11(12):124018, 2016.

McCormack MC, Belli AJ, Waugh D, Matsui EC, Peng RD, Williams DL, Paulin L, Saha A, Aloe CM, Diette GB, Breysse PN, Hansel NN: Respiratory effects of indoor heat and the interaction with air pollution in chronic obstructive pulmonary disease. Ann Am Thorac Soc 13(12):2125-2131, 2016.

McGowan EC, Matsui EC, Peng R, Salo PM, Zeldin DC, Keet CA: Racial/ethnic and socioeconomic differences in self-reported food allergy among food-sensitized children in National Health and Nutrition Examination Survey III. Ann Allergy Asthma Immunol 117(5):570-572, 2016.

Sudini K, Diette GB, Breysse PN, McCormack MC, Bull D, Biswal S, Zhai S, Brereton N, Peng RD, Matsui EC: A randomized controlled trial of the effect of broccoli sprouts on antioxidant gene expression and airway inflammation in asthmatics. J Allergy Clin Immunol Pract 4(5):932-40, 2016.

Patil P, Peng RD, Leek JT: What should researchers expect when they replicate studies? A statistical view of replicability in psychological science. Perspect Psychol Sci 11(4):539-44, 2016.

McGowan EC, Peng RD, Salo PM, Zeldin DC, Keet CA: Changes in food-specific IgE over time in the National Health and Nutrition Examination Survey (NHANES). J Allergy Clin Immunol Pract 4(4):713-20, 2016.

Pang Y, Peng RD, Jones MR, Francesconi KA, Goessler W, Howard BV, Umans JG, Best LG, Guallar E, Post WS, Kaufman JD, Vaidya D, Navas-Acien A: Metal mixtures in urban and rural populations in the US: The Multi-Ethnic Study of Atherosclerosis and the Strong Heart Study. Environ Res 147:356-364, 2016.

Hardin J, Hoerl R, Horton NJ, Nolan D, Baumer B, Hall-Holt O, Murrell P, Peng R, Roback P, Temple Lang D, Ward MD: Data science in statistics curricula: preparing students to "think with data." The American Statistician 69(4):343-353, 2015.

Krall JR, Simpson CH, Peng RD: A model-based approach for imputing censored data in source apportionment studies. Environ Ecol Stat 22(4):779-800, 2015.

Powell H, Krall JR, Wang Y, Bell ML, Peng RD: Ambient coarse particulate matter and hospital admissions in the Medicare Cohort Air Pollution Study, 1999-2010. Environ Health Perspect 123(11):1152-8, 2015.

Krall JR, Chang HH, Sarnat SE, Peng RD, Waller LA: Current methods and challenges for epidemiological studies of the associations between chemical constituents of particulate matter and health. Curr Environ Health Rep 2(4):388-98, 2015.

McGowan EC, Matsui EC, McCormack MC, Pollack CE, Peng R, Keet CA: Effect of poverty, urbanization, and race/ethnicity on perceived food allergy in the United States. Ann Allergy Asthma Immunol 115(1):85-86.e2, 2015.

Bell ML, Son JY, Peng RD, Wang Y, Dominici F: Brief report: Ambient PM2.5 and risk of hospital admissions: do risks differ for men and women? Epidemiology 26(4):575-9, 2015.

McCormack MC, Belli AJ, Kaji DA, Matsui EC, Brigham EP, Peng RD, Sellers C, Williams DL, Diette GB, Breysse PN, Hansel NN: Obesity as a susceptibility factor to indoor particulate matter health effects in COPD. Eur Respir J 45(5):1248-57, 2015.

Leek JT, Peng RD: Statistics: P values are just the tip of the iceberg. Nature 520(7549):612, 2015.

Leek JT, Peng RD: What is the question? Science 347(6228):1314-1315, 2015.

Davis MF, Peng RD, McCormack MC, Matsui EC: Staphylococcus aureus colonization is associated with wheeze and asthma among US children and young adults. J Allergy Clin Immunol 135(3):811-813, 2015.

Keet CA, McCormack MC, Pollack CE, Peng RD, McGowan E, Matsui EC: Neighborhood poverty, urban residence, race/ethnicity, and asthma: rethinking the inner-city asthma epidemic. J Allergy Clin Immunol 135(3):655-62, 2015.

Leek JT, Peng RD: Opinion: Reproducible research can still be wrong: Adopting a prevention approach. Proc Natl Acad Sci 112(6):1645-6, 2015.

Peng RD, Butz AM, Hackstadt AJ, Williams DL, Diette GB, Breysse PN, Matsui EC: Estimating the health benefit of reducing indoor air pollution in a randomized environmental intervention. JRSS-A 178(2):425-443, 2015.

 

 

Charles Rohde  (go to top of document)

 

Schubert MC, Gimmon Y, Millar J, Brewer KJ, Roberts D, Shelhamer M, Rohde C, Serrador JM: Veterans have greater variability in their perception of binocular alignment. PLoS One 13(12):e0209622, 2018.

Usher T, Gaskin DJ, Bower K, Rohde C, Thorpe RJ Jr.: Residential segregation and hypertension prevalence in black and white older adults. J Appl Gerontol 37(2):177-202, 2018.

O'Daly A, Rohde C, Brushart T: The topographic specificity of muscle reinnervation predicts function. Eur J Neurosci 43(3):443-50, 2016.

 

 

Michael Rosenblum   (go to top of document)

 

McGinty EE, Stone EM, Kennedy-Hendricks A, Bandara S, Murphy KA, Stuart EA, Rosenblum MA, Daumit GL: Effects of Maryland's Affordable Care Act Medicaid health home waiver on quality of cardiovascular care among people with serious mental illness. J Gen Intern Med 35(11):3148-3158, 2020.

Canto MI, Trindade AJ, Abrams J, Rosenblum M, Dumot J, Chak A, Iyer P, Diehl D, Khara HS, Corbett FS, McKinley M, Shin EJ, Waxman I, Infantolino A, Tofani C, Samarasena J, Chang K, Wang B, Goldblum J, Voltaggio L, Montgomery E, Lightdale CJ, Shaheen NJ: Multifocal cryoballoon ablation for eradication of Barrett's esophagus-related neoplasia: a prospective multicenter clinical trial. Am J Gastroenterol 115(11):1879-1890, 2020.

Rosenblum M, Fang EX, Liu H: Optimal, twostage, adaptive enrichment designs for randomized trials, using sparse linear programming. JRSS-B 82(3):749-772, 2020.

Huang EJ, Fang EX, Hanley DF, Rosenblum M: Constructing a confidence interval for the fraction who benefit from treatment, using randomized trial data. Biometrics 75(4):1228-1239, 2019.

Wang B, Ogburn EL, Rosenblum M: Analysis of covariance in randomized trials: More precision and valid confidence intervals, without model assumptions. Biometrics 75(4):1391-1400, 2019.

Diaz I, Colantuoni E, Hanley DF, Rosenblum M: Improved precision in the analysis of randomized trials with survival outcomes, without assuming proportional hazards. Lifetime Data Anal 25(3):439-468, 2019.

Wu AW, Weston CM, Ibe CA, Ruberman CF, Bone L, Boonyasai RT, Hwang S, Gentry J, Purnell L, Lu Y, Liang S, Rosenblum M: The Baltimore Community-based Organizations Neighborhood Network: Enhancing Capacity Together (CONNECT) cluster RCT. Am J Prev Med 57(2):e31-e41, 2019.

Rosenblum MA, Miller P, Reist B, Stuart EA, Thieme M, Louis TA: Adaptive design in surveys and clinical trials: similarities, differences and opportunities for crossfertilization. JRSS-A 182(3):963-982, 2019.

Rosenblum M, Wang B: The critical role of statistical analyses in maximizing power gains from covariate-adaptive trial designs. JAMA Nets Open 2(4):e190789, 2019.

Hanley DF, Thompson RE, Rosenblum M, Yenokyan G, ..., Betz JF, Sugar EA, et al: Efficacy and safety of minimally invasive surgery with thrombolysis in intracerebral haemorrhage evacuation (MISTIE III): a randomised, controlled, open-label, blinded endpoint phase 3 trial. Lancet 393(10175):1021-1032, 2019.

Wu AW, Hwang S, Weston CM, Ibe C, Boonyasai RT, Bone L, Basu L, Lief I, Gentry J, Purnell L, Rosenblum M, Baltimore CONNECT Study Team: Baltimore CONNECT: A randomized trial to build partnership between community organizations and a local health system. Prog Community Health Partnersh 12(3):297-306, 2018.

Hemorrhagic Stroke Academia Industry (HEADS) Roundtable Participants (includes Rosenblum M): Basic and translational research in intracerebral hemorrhage: limitations, priorities, and recommendations. Stroke 49(5):1308-1314, 2018.

Hemorrhagic Stroke Academia Industry (HEADS) Roundtable Participants (includes Rosenblum M): Unmet needs and challenges in clinical research of intracerebral hemorrhage. Stroke 49(5):1299-1307, 2018.

Fisher A, Rosenblum M, Alzheimer's Disease Neuroimaging Initiative: Stochastic optimization of adaptive enrichment designs for two subpopulations. J Biopharm Stat 28(5):966-982, 2018.

Qian T, Colantuoni E, Fisher A, Rosenblum M, Alzheimer's Disease Neuroimaging Initiative: Sensitivity of adaptive enrichment trial designs to accrual rates, time to outcome measurement, and prognostic variables. Contemp Clin Trials Commun 8:39-48, 2017.

Rosenblum M, Hanley DF: Adaptive enrichment designs for stroke clinical trials. Stroke 48(7):2021-2025, 2017.

Huang EJ, Fang EX, Hanley DF, Rosenblum M: Inequality in treatment benefits: Can we determine if a new treatment benefits the many or the few? Biostatistics 18(2):308-324, 2017.

Hanley DF, Lane K, McBee N..., Diener-West M, Muschelli J, Betz JF, Thompson CB, Sugar EA, Yenokyan G, ..., Rosenblum M, Thompson RE, et al: Thrombolytic removal of intraventricular haemorrhage in treatment of severe stroke: results of the randomised, multicentre, multiregion, placebo-controlled CLEAR III trial. Lancet 389(10069):603-611, 2017.

Steingrimsson JA, Hanley DF, Rosenblum M: Improving precision by adjusting for prognostic baseline variables in randomized trials with binary outcomes, without regression model assumptions. Contemp Clin Trials 54:18-24, 2017.

Patil P, Colantuoni E, Leek JT, Rosenblum M: Genomic and clinical predictors for improving estimator precision in randomized trials of breast cancer treatments. Contemp Clin Trials Commun 3:48-54, 2016.

Hanley DF, Thompson RE, Muschelli J, Rosenblum M, ..., Thompson CB, Yenokyan G, Huang E, et al: Safety and efficacy of minimally invasive surgery plus alteplase in intracerebral haemorrhage evacuation (MISTIE): a randomised, controlled, open-label, phase 2 trial. Lancet Neurol 15(12):1228-1237, 2016.

Rosenblum M, Qian T, Du Y, Qiu H, Fisher A: Multiple testing procedures for adaptive enrichment designs: combining group sequential and reallocation approaches. Biostatistics 17(4):650-62, 2016.

Rosenblum M, Luber B, Thompson RE, Hanley D: Group sequential designs with prospectively planned rules for subpopulation enrichment. Stat Med 35(21):3776-91, 2016.

Diaz I, Colantuoni E, Rosenblum M: Enhanced precision in the analysis of randomized trials with ordinal outcomes. Biometrics 72(2):422-31, 2016.

Diaz I, Rosenblum M: Targeted maximum likelihood estimation using exponential families. Int J Biostat 11(2):233-51, 2015.

Webb AJ, Ullman NL, Morgan TC, Muschelli J, Kornbluth J, Awad IA, Mayo S, Rosenblum M, Ziai W, Zuccarrello M, Aldrich F, John S, Harnof S, Lopez G, Broaddus WC, Wijman C, Vespa P, Bullock R, Haines SJ, Cruz-Flores S, Tuhrim S, Hill MD, Narayan R, Hanley DF, MISTIE and CLEAR Investigators: Accuracy of the ABC/2 score for intracerebral hemorrhage: systematic review and analysis of MISTIE, CLEAR-IVH, and CLEAR III. Stroke 46(9):2470-6, 2015.

Colantuoni E, Rosenblum M: Leveraging prognostic baseline variables to gain precision in randomized trials. Stat Med 34(18):2602-17, 2015.

Rosenblum M: Adaptive randomized trial designs that cannot be dominated by any standard design at the same total sample size. Biometrika 102(1):191-202, 2015.

 

 

Ingo Ruczinski  (go to top of document)

 

Strand M, Austin E, Moll M, ..., Ruczinski I, et al: A risk prediction model for mortality among smokers in the COPDGene study. Chronic Obstr Pulm Dis 7(4):346-361, 2020.

Bick AG, Weinstock JS, Nandakumar SK, ..., NHLBI Trans-Omics for Precision Medicine Consortium (includes Ruczinski I), et al: Inherited causes of clonal haematopoiesis in 97,691 whole genomes. Nature 586(7831):763-768, 2020.

Milne S, Li X, Hernandez Cordero AI, Yang CX, Cho MH, Beaty TH, Ruczinski I, Hansel NN, Bosse Y, Brandsma CA, Sin DD, Obeidat M: Protective effect of club cell secretory protein (CC-16) on COPD risk and progression: a Mendelian randomisation study. Thorax 75(11):934-943, 2020.

Zhao X, Qiao D, Yang C, Kasela S, ..., Ruczinski I, et al: Whole genome sequence analysis of pulmonary function and COPD in 19,996 multi-ethnic participants. Nat Commun 11(1):5182, 2020.

Cristiano S, McKean D, Carey J, Bracci P, Brennan P, Chou M, Du M, Gallinger S, Goggins MG, Hassan MM, Hung RJ, Kurtz RC, Li D, Lu L, Neale R, Olson S, Petersen G, Rabe KG, Fu J, Risch H, Rosner GL, Ruczinski I, Klein AP, Scharpf RB: Bayesian copy number detection and association in large-scale studies. BMC Cancer 20(1):856, 2020.

Li X, Li Z, Zhou H, Gaynor SM, Liu Y, ..., NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium (includes Ruczinski I), et al: Dynamic incorporation of multiple in silico functional annotations empowers rare variant association analysis of large whole-genome sequencing studies at scale. Nat Genet 52(9):969-983, 2020.

Kanchan K, Iyer K, Yanek LR, Carcamo-Orive I, Taub MA, ..., Ruczinski I, et al: Genomic integrity of human induced pluripotent stem cells across nine studies in the NHLBI NextGen program. Stem Cell Res 46:101803, 2020.

Bishop MR, Diaz Perez KK, Sun M, Ho S, Chopra P, Mukhopadhyay N, Hetmanski JB, Taub MA, ..., Ruczinski I, et al: Genome-wide enrichment of de novo coding mutations in orofacial cleft trios. Am J Hum Genet 107(1):124-136, 2020.

Vince N, Limou S, Daya M, ..., Ruczinski I, ..., Taub M, et al: Association of HLA-DRB109:01 with tIgE levels among African-ancestry individuals with asthma. J Allergy Clin Immunol 146(1):147-155, 2020.

Sergeant S, Hallmark B, Mathias RA, Mustin TL, Ivester P, Bohannon ML, Ruczinski I, Johnstone L, Seeds MC, Chilton FH: Prospective clinical trial examining the impact of genetic variation in FADS1 on the metabolism of linoleic acid- and ɣ-linolenic acid-containing botanical oils. Am J Clin Nutr 111(5):1068-1078, 2020.

Hecker J, Ruczinski I, Cho MH, Silverman EK, Coull B, Lange C: A flexible and nearly optimal sequential testing approach to randomized testing: QUICK-STOP. Genet Epidemiol 44(2):139-147, 2020.

Kessler MD, Loesch DP, Perry JA, ..., TOPMed Population Genetics Working Group (includes Ruczinski I), et al: De novo mutations across 1,465 diverse genomes reveal mutational insights and reductions in the Amish founder population. Proc Natl Acad Sci U S A 117(5):2560-2569, 2020.

Obeidat M, Faiz A, Li X, van den Berge M, Hansel NN, Joubert P, Hao K, Brandsma CA, Rafaels N, Mathias R, Ruczinski I, Beaty TH, Barnes KC, Man SFP, Pare PD, Sin DD: The pharmacogenomics of inhaled corticosteroids and lung function decline in COPD. Eur Respir J 54(6):1900521, 2019.

Kachroo P, Hecker J, Chawes BL, Ahluwalia TS, ..., National Heart, Lung, and Blood Institute Trans-Omics for Precision Medicine (TOPMed) Consortium (includes Ruczinski I): Whole genome sequencing identifies CRISPLD2 as a lung function gene in children with asthma. Chest 156(6):1068-1079, 2019.

Lowe KE, Regan EA, Anzueto A, ..., Ruczinski I, et al: COPDGene 2019: Redefining the diagnosis of chronic obstructive pulmonary disease. Chronic Obstr Pulm Dis 6(5):384-399, 2019.

Sherman T, Fu J, Scharpf RB, Bureau A, Ruczinski I: Detection of rare disease variants in extended pedigrees using RVS. Bioinformatics 35(14):2509-2511, 2019.

Boorgula MP, Taub MA, Rafaels N, Daya M, Campbell M, Chavan S, Shetty A, Cheadle C, Barkataki S, Fan J, David G, Beaty TH, Ruczinski I, Hanifin J, Schneider LC, Gallo RL, Paller AS, Beck LA, Leung DY, Mathias RA, Barnes KC: Replicated methylation changes associated with eczema herpeticum and allergic response. Clin Epigenetics 11(1):122, 2019.

Winters A, Bahnson HT, Ruczinski I, Boorgula MP, Malley C, Keramati AR, Chavan S, Larson D, Cerosaletti K, Sayre PH, Plaut M, Du Toit G, Lack G, Barnes KC, Nepom GT, Mathias RA, Immune Tolerance Network LEAP Study Team: The MALT1 locus and peanut avoidance in the risk for peanut allergy. J Allergy Clin Immunol 143(6):2326-2329, 2019.

Harris DN, Ruczinski I, Yanek LR, Becker LC, Becker DM, Guio H, Cui T, Chilton FH, Mathias RA, O'Connor TD: Evolution of hominin polyunsaturated fatty acid metabolism: from Africa to the New World. Genome Biol Evol 11(5):1417-1430, 2019.

Eshleman SH, Laeyendecker O, Kammers K, Chen A, Sivay MV, Kottapalli S, Sie BM, Yuan T, Monaco DR, Mohan D, Wansley D, Kula T, Morrison C, Elledge SJ, Brookmeyer R, Ruczinski I, Larman HB: Comprehensive profiling of HIV antibody evolution. Cell Rep 27(5):1422-1433, 2019.

Keramati AR, Yanek LR, Iyer K, Taub MA, Ruczinski I, Becker DM, Becker LC, Faraday N, Mathias RA: Targeted deep sequencing of the PEAR1 locus for platelet aggregation in European and African American families. Platelets 30(3):380-386, 2019.

Tietz T, Selinski S, Golka K, Hengstler JG, Gripp S, Ickstadt K, Ruczinski I, Schwender H: Identification of interactions of binary variables associated with survival time using survivalFS. Arch Toxicol 93(3):585-602, 2019.

Fu JM, Leslie EJ, Scott AF, Murray JC, Marazita ML, Beaty TH, Scharpf RB, Ruczinski I: Detection of de novo copy number deletions from targeted sequencing of trios. Bioinformatics 35(4):571-578, 2019.

Daya M, Rafaels N, Brunetti TM, ..., Ruczinski I, et al: Association study in African-admixed populations across the Americas recapitulates asthma risk loci in non-African populations. Nat Commun 10(1):880, 2019.

Wang AW, Avramopoulos D, Lori A, Mulle J, Conneely K, Powers A, Duncan E, Almli L, Massa N, McGrath J, Schwartz AC, Goes FS, Weng L, Wang R, Yolken R, Ruczinski I, Gillespie CF, Jovanovic T, Ressler K, Pulver AE, Pearce BD: Genome-wide association study in two populations to determine genetic variants associated with Toxoplasma gondii infection and relationship to schizophrenia risk. Prog Neuropsychopharmacol Biol Psychiatry 92:133-147, 2019.

Bureau A, Begum F, Taub MA, Hetmanski JB, Parker MM, Albacha-Hejazi H, Scott AF, Murray JC, Marazita ML, Bailey-Wilson JE, Beaty TH, Ruczinski I: Inferring disease risk genes from sequencing data in multiplex pedigrees through sharing of rare variants. Genet Epidemiol 43(1):37-49, 2019.

Sherman RM, Forman J, Antonescu V, Puiu D, ..., Ruczinski I, et al: Assembly of a pan-genome from deep sequencing of 910 humans of African descent. Nat Genet 51(1):30-35, 2019.

Qiao D, Ameli A, Prokopenko D, Chen H, Kho AT, Parker MM, Morrow J, Hobbs BD, Liu Y, Beaty TH, Crapo JD, Barnes KC, Nickerson DA, Bamshad M, Hersh CP, Lomas DA, Agusti A, Make BJ, Calverley PMA, Donner CF, Wouters EF, Vestbo J, Pare PD, Levy RD, Rennard SI, Tal-Singer R, Spitz MR, Sharma A, Ruczinski I, Lange C, Silverman EK, Cho MH: Whole exome sequencing analysis in severe chronic obstructive pulmonary disease. Hum Mol Genet 27(21):3801-3812, 2018.

Rosenthal EA, Shirts BH, Amendola LM, Horike-Pyne M, Robertson PD, Hisama FM, Bennett RL, Dorschner MO, Nickerson DA, Stanaway IB, Nassir R, Vickers KT, Li C, Grady WM, Peters U, Jarvik GP, NHLBI GO Exome Sequencing Project (includes Ruczinski I): Rare loss of function variants in candidate genes and risk of colorectal cancer. Hum Genet 137(10):795-806, 2018.

Natarajan P, Peloso GM, Zekavat SM, Montasser M, Ganna A, Chaffin M, Khera AV, Zhou W, Bloom JM, Engreitz JM, Ernst J, O'Connell JR, Ruotsalainen SE, Alver M, Manichaikul A, ..., NHLBI TOPMed Lipids Working Group (includes Ruczinski I): Deep-coverage whole genome sequences and blood lipids among 16,324 individuals. Nat Commun 9(1):3391, 2018.

Sun X, Gao J, Jin P, Eng C, Burchard EG, Beaty TH, Ruczinski I, Mathias RA, Barnes K, Wang F, Qin ZS, CAAPA Consortium: Optimized distributed systems achieve significant performance improvement on sorted merging of massive VCF files. Gigascience 7(6):giy052, 2018.

Zekavat SM, Ruotsalainen S, Handsaker RE, Alver M, Bloom J, Poterba T, Seed C, Ernst J, Chaffin M, Engreitz J, Peloso GM, Manichaikul A, Yang C, Ryan KA, Fu M, Johnson WC, Tsai M, Budoff M, Ramachandran VS, Cupples LA, Rotter JI, Rich SS, Post W, Mitchell BD, Correa A, Metspalu A, Wilson JG, Salomaa V, Kellis M, Daly MJ, Neale BM, McCarroll S, Surakka I, Esko T, Ganna A, Ripatti S, Kathiresan S, Natarajan P, NHLBI TOPMed Lipids Working Group (includes Ruczinski I): Deep coverage whole genome sequences and plasma lipoprotein(a) in individuals of European and African ancestries. Nat Commun 9(1):2606, 2018.

Parks S, Avramopoulos D, Mulle J, McGrath J, Wang R, Goes FS, Conneely K, Ruczinski I, Yolken R, Pulver AE, Pearce BD: HLA typing using genome wide data reveals susceptibility types for infections in a psychiatric disease enriched sample. Brain Behav Immun 70:203-213, 2018.

Obeidat M, Zhou G, Li X, Hansel NN, Rafaels N, Mathias R, Ruczinski I, Beaty TH, Barnes KC, Pare PD, Sin DD: The genetics of smoking in individuals with chronic obstructive pulmonary disease. Respir Res 19(1):59, 2018.

Reynolds LM, Howard TD, Ruczinski I, Kanchan K, Seeds MC, Mathias RA, Chilton FH: Tissue-specific impact of FADS cluster variants on FADS1 and FADS2 gene expression. PLoS One 13(3):e0194610, 2018.

Long X, Daya M, Zhao J, Rafaels N, Liang H, Potee J, Campbell M, Zhang B, Araujo MI, Oliveira RR, Mathias RA, Gao L, Ruczinski I, Georas SN, Vercelli D, Beaty TH, Barnes KC, Chen X, Chen Q: The role of ST2 and ST2 genetic variants in schistosomiasis. J Allergy Clin Immunol 140(5):1416-1422, 2017.

Rahbar E, Ainsworth HC, Howard TD, Hawkins GA, Ruczinski I, Mathias R, Seeds MC, Sergeant S, Hixson JE, Herrington DM, Langefeld CD, Chilton FH: Uncovering the DNA methylation landscape in key regulatory regions within the FADS cluster. PLoS One 12(9):e0180903, 2017.

Qiao D, Lange C, Laird NM, Won S, Hersh CP, Morrow J, Hobbs BD, Lutz SM, Ruczinski I, Beaty TH, Silverman EK, Cho MH: Gene-based segregation method for identifying rare variants in family-based sequencing studies. Genet Epidemiol 41(4):309-319, 2017.

Johnston HR, Hu YJ, Gao J, O'Connor TD, Abecasis GR, Wojcik GL, Gignoux CR, Gourraud PA, Lizee A, Hansen M, Genuario R, Bullis D, Lawley C, Kenny EE, Bustamante C, Beaty TH, Mathias RA, Barnes KC, Qin ZS, CAAPA Consortium (includes Ruczinski I): Identifying tagging SNPs for African specific genetic variation from the African Diaspora Genome. Sci Rep 7:46398, 2017.

Wain LV, Shrine N, Artigas MS, ..., Ruczinski I, et al: Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets. Nat Genet 49(3):416-425, 2017.

Xiao Y, Taub MA, Ruczinski I, Begum F, Hetmanski JB, Schwender H, Leslie EJ, Koboldt DC, Murray JC, Marazita ML, Beaty TH: Evidence for SNP-SNP interaction identified through targeted sequencing of cleft case-parent trios. Genet Epidemiol 41(3):244-250, 2017.

Yu Y, Zuo X, He M, Gao J, Fu Y, Qin C, Meng L, Wang W, Song Y, Cheng Y, Zhou F, Chen G, Zheng X, Wang X, Liang B, Zhu Z, Fu X, Sheng Y, Hao J, Liu Z, Yan H, Mangold E, Ruczinski I, Liu J, Marazita ML, Ludwig KU, Beaty TH, Zhang X, Sun L, Bian Z: Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity. Nat Commun 8:14364, 2017.

Kammers K, Taub MA, Ruczinski I, Martin J, Yanek LR, Frazee A, Gao Y, Hoyle D, Faraday N, Becker DM, Cheng L, Wang ZZ, Leek JT, Becker LC, Mathias RA: Integrity of induced pluripotent stem cell (iPSC) derived megakaryocytes as assessed by genetic and transcriptomic analysis. PLoS One 12(1):e0167794, 2017.

Fu J, Beaty TH, Scott AF, Hetmanski J, Parker MM, Wilson JE, Marazita ML, Mangold E, Albacha-Hejazi H, Murray JC, Bureau A, Carey J, Cristiano S, Ruczinski I, Scharpf RB: Whole exome association of rare deletions in multiplex oral cleft families. Genet Epidemiol 41(1):61-69, 2017.

Kessler MD, Yerges-Armstrong L, Taub MA, Shetty AC, Maloney K, Jeng LJ, Ruczinski I, et al: Challenges and disparities in the application of personalized genomic medicine to populations with African ancestry. Nat Commun 7:12521, 2016.

Mathias RA, Taub MA, Gignoux CR, ..., Ruczinski I, et al: A continuum of admixture in the Western Hemisphere revealed by the African Diaspora genome. Nat Commun 7:12522, 2016.

Begum F, Ruczinski I, Hokanson JE, Lutz SM, Parker MM, Cho MH, Hetmanski JB, Scharpf RB, Crapo JD, Silverman EK, Beaty TH: Hemizygous deletion on chromosome 3p26.1 is associated with heavy smoking among African American subjects in the COPDGene study. PLoS One 11(10):e0164134, 2016.

Gao L, Emond MJ, Louie T, Cheadle C, Berger AE, Rafaels N, Vergara C, Kim Y, Taub MA, Ruczinski I, Mathai SC, Rich SS, Nickerson DA, Hummers LK, Bamshad MJ, Hassoun PM, Mathias RA, National Heart, Lung, and Blood Institute GO Exome Sequencing Project, Barnes KC: Identification of rare variants in ATP8B4 as a risk factor for systemic sclerosis by whole-exome sequencing. Arthritis Rheumatol 68(1):191-200, 2016.

Begum F, Ruczinski I, Li S, Silverman EK, Cho MH, Lynch DA, Curran-Everett D, Crapo J, Scharpf RB, Parker MM, Hetmanski JB, Beaty TH: Identifying a deletion affecting total lung capacity among subjects in the COPDGene Study Cohort. Genet Epidemiol 40(1):81-8, 2016.

Sergeant S, Ruczinski I, Ivester P, Lee TC, Morgan TM, Nicklas BJ, Mathias RA, Chilton FH: Impact of methods used to express levels of circulating fatty acids on the degree and direction of associations with blood lipids in humans. Br J Nutr 115(2):251-61, 2016.

Gao L, Bin L, Rafaels NM, Huang L, Potee J, Ruczinski I, Beaty TH, Paller AS, Schneider LC, Gallo R, Hanifin JM, Beck LA, Geha RS, Mathias RA, Barnes KC, Leung DY: Targeted deep sequencing identifies rare loss-of-function variants in IFNGR1 for risk of atopic dermatitis complicated by eczema herpeticum. J Allergy Clin Immunol 136(6):1591-600, 2015.

Lee SE, West KP Jr, Cole RN, Schulze KJ, Christian P, Wu LS, Yager JD, Groopman J, Ruczinski I: Plasma proteome biomarkers of inflammation in school aged children in Nepal. PLoS One 10(12):e0144279, 2015.

Goes FS, McGrath J, Avramopoulos D, Wolyniec P, Pirooznia M, Ruczinski I, Nestadt G, Kenny EE, Vacic V, Peters I, Lencz T, Darvasi A, Mulle JG, Warren ST, Pulver AE: Genome-wide association study of schizophrenia in Ashkenazi Jews. Am J Med Genet B Neuropsychiatr Genet 168(8):649-59, 2015.

Auer PL, Nalls M, ..., Chen WM, ..., Manichaikul A, ..., National Heart, Lung, and Blood Institute Exome Sequencing Project (includes Ruczinski I): Rare and coding region genetic variants associated with risk of ischemic stroke: The NHLBI Exome Sequence Project. JAMA Neurol 72(7):781-8, 2015.

Hansel NN, Pare PD, Rafaels N, Sin DD, Sandford A, Daley D, Vergara C, Huang L, Elliott WM, Pascoe CD, Arsenault BA, Postma DS, Boezen HM, Bossé Y, van den Berge M, Hiemstra PS, Cho MH, Litonjua AA, Sparrow D, Ober C, Wise RA, Connett J, Neptune ER, Beaty TH, Ruczinski I, Mathias RA, Barnes KC, Lung Health Study: Genome-wide association study identification of novel loci associated with airway responsiveness in chronic obstructive pulmonary disease. Am J Respir Cell Mol Biol 53(2):226-34, 2015.

Long X, Chen Q, Zhao J, Rafaels N, Mathias P, Liang H, Potee J, Campbell M, Zhang B, Gao L, Georas SN, Vercelli D, Beaty TH, Ruczinski I, Mathias R, Barnes KC, Chen X: An IL-13 promoter polymorphism associated with liver fibrosis in patients with Schistosoma japonicum. PLoS One 10(8):e0135360, 2015.

Younkin SG, Scharpf RB, Schwender H, Parker MM, Scott AF, Marazita ML, Beaty TH, Ruczinski I: A genome-wide study of inherited deletions identified two regions associated with nonsyndromic isolated oral clefts. Birth Defects Res A Clin Mol Teratol 103(4):276-83, 2015.

Kammers K, Cole RN, Tiengwe C, Ruczinski I: Detecting significant changes in protein abundance. EuPA Open Proteom 7:11-19, 2015.