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SELECTED RECENT ARTICLES BY:

Karen Bandeen-Roche | Joshua Betz | Brian Caffo | Gwendolyn Clemens | Elizabeth Colantuoni (Johnson) | Ciprian Crainiceanu| Frank Curriero | Marie Diener-West | Ani Eloyan | Constantine Frangakis | Andre Hackman | Kasper Hansen | Harris Jaffee | Leah Jager | Hongkai Ji | Jeff Leek | Martin Lindquist | Thomas Louis | Aidan McDermott |John McGready | Lucy Meoni | Elizabeth Ogburn | Roger Peng | Charles Rohde | Michael Rosenblum | Ingo Ruczinski | Daniel Scharfstein | Elizabeth Stuart | Elizabeth Sugar | Margaret Taub| Carol Thompson | Richard Thompson | Jing Tian | Cristian Tomasetti | James Tonascia | Jiangxia Wang | Mei-Cheng Wang | Sarah Wheelan | Amy Wozniak | Gayane Yenokyan | Scott Zeger | Vadim Zipunnikov

Karen Bandeen-Roche Description: C:\Users\margo\my_doc\My Web Sites\Publication\UP_AR~11.gif(go to top of document)

Swenor BK, Bandeen-Roche K, Muñoz B, West SK: Does walking speed mediate the association between visual impairment and self-report of mobility disability? The Salisbury Eye Evaluation Study. J Am Geriatr Soc 62(8):1540-5, 2014.

Crews DC, Scialla JJ, Boulware LE, Navaneethan SD, Nally JV Jr, Liu X, Arrigain S, Schold JD, Ephraim PL, Jolly SE, Sozio SM, Michels WM, Miskulin DC, Tangri N, Shafi T, Wu AW, Bandeen-Roche K, DEcIDE Network Patient Outcomes in End Stage Renal Disease Study Investigators: Comparative effectiveness of early versus conventional timing of dialysis initiation in advanced CKD. Am J Kidney Dis 63(5):806-15, 2014.

Schrack JA, Zipunnikov V, Goldsmith J, Bandeen-Roche K, Crainiceanu CM, Ferrucci L: Estimating energy expenditure from heart rate in older adults: a case for calibration. PLoS One 9(4):e93520, 2014.

Schwartz BS, Bailey-Davis L, Bandeen-Roche K, Pollak J, Hirsch AG, Nau C, Liu AY, Glass TA: Attention deficit disorder, stimulant use, and childhood body mass index trajectory. Pediatrics 133(4):668-76, 2014.

Shafi T, Sozio SM, Bandeen-Roche KJ, Ephraim PL, Luly JR, St Peter WL, McDermott A, Scialla JJ, Crews DC, Tangri N, Miskulin DC, Michels WM, Jaar BG, Herzog CA, Zager PG, Meyer KB, Wu AW, Boulware LE, DEcIDE Network Patient Outcomes in End Stage Renal Disease Study Investigators: Predialysis systolic BP variability and outcomes in hemodialysis patients. J Am Soc Nephrol 25(4):799-809, 2014.

Gottesman RF, Rawlings AM, Sharrett AR, Albert M, Alonso A, Bandeen-Roche K, Coker LH, Coresh J, Couper DJ, Griswold ME, Heiss G, Knopman DS, Patel MD, Penman AD, Power MC, Selnes OA, Schneider AL, Wagenknecht LE, Windham BG, Wruck LM, Mosley TH: Impact of differential attrition on the association of education with cognitive change over 20 years of follow-up: The ARIC Neurocognitive Study. Am J Epidemiol 179(8):956-66, 2014.

Weiss CO, Varadhan R, Puhan MA, Vickers A, Bandeen-Roche K, Boyd CM, Kent DM: Multimorbidity and evidence generation. J Gen Intern Med 29(4):653-60, 2014.

Fitzpatrick SL, Bandeen-Roche K, Stevens VJ, Coughlin JW, Rubin RR, Brantley PJ, Funk KL, Svetkey LP, Jerome GJ, Dalcin A, Charleston J, Appel LJ: Examining behavioral processes through which lifestyle interventions promote weight loss: Results from PREMIER. Obesity (Silver Spring) 22(4):1002-7, 2014.

Ning J, Bandeen-Roche K: Estimation of time-dependent association for bivariate failure times in the presence of a competing risk. Biometrics 70(1):10-20, 2014.

Gross AL, Brandt J, Bandeen-Roche K, Carlson MC, Stuart EA, Marsiske M, Rebok GW: Do older adults use the method of loci? Results from the ACTIVE Study. Exp Aging Res 40(2):140-63, 2014.

Varadhan R, Yao W, Matteini A, Beamer BA, Xue QL, Yang H, Manwani B, Reiner A, Jenny N, Parekh N, Fallin MD, Newman A, Bandeen-Roche K, Tracy R, Ferrucci L, Walston J: Simple biologically informed inflammatory index of two serum cytokines predicts 10 year all-cause mortality in older adults. J Gerontol A Biol Sci Med Sci 69(2):165-73, 2014.

Crews DC, Scialla JJ, Liu J, Guo H, Bandeen-Roche K, Ephraim PL, Jaar BG, Sozio SM, Miskulin DC, Tangri N, Shafi T, Meyer KB, Wu AW, Powe NR, Boulware LE, Developing Evidence to Inform Decisions about Effectiveness (DEcIDE) Patient Outcomes in End Stage Renal Disease Study Investigators: Predialysis health, dialysis timing, and outcomes among older United States adults. J Am Soc Nephrol 25(2):370-9, 2014.

St Peter WL, Sozio SM, Shafi T, Ephraim PL, Luly J, McDermott A, Bandeen-Roche K, Meyer KB, Crews DC, Scialla JJ, Miskulin DC, Tangri N, Jaar BG, Michels WM, Wu AW, Boulware LE, DEcIDE Network Patient Outcomes in End-Stage Renal Disease Study Investigators: Patterns in blood pressure medication use in US incident dialysis patients over the first 6 months. BMC Nephrol 14:249, 2013.

Miskulin DC, Zhou J, Tangri N, Bandeen-Roche K, Cook C, Ephraim PL, Crews DC, Scialla JJ, Sozio SM, Shafi T, Jaar BG, Boulware LE, DEcIDE Network Patient Outcomes in End Stage Renal Disease Study Investigators: Trends in anemia management in US hemodialysis patients 2004-2010. BMC Nephrol 14:264, 2013.

Keay L, Munoz B, Duncan DD, Hahn D, Baldwin K, Turano KA, Munro CA, Bandeen-Roche K, West SK: Older drivers and rapid deceleration events: Salisbury Eye Evaluation Driving Study. Accid Anal Prev 58:279-85, 2013.

Cohen AA, Milot E, Yong J, Seplaki CL, Fulop T, Bandeen-Roche K, Fried LP: A novel statistical approach shows evidence for multi-system physiological dysregulation during aging. Mech Ageing Dev 134(3-4):110-7, 2013.

Petersen J, Bandeen-Roche K, Budtz-Jorgensen E, Larsen KG: Predicting latent class scores for subsequent analysis. Psychometrika 77(2):244-262, 2012.

Talegawkar SA, Bandinelli S, Bandeen-Roche K, Chen P, Milaneschi Y, Tanaka T, Semba RD, Guralnik JM, Ferrucci L: A higher adherence to a Mediterranean-style diet is inversely associated with the development of frailty in community-dwelling elderly men and women. J Nutr 142(12):2161-6, 2012.

Boulware EL, Tangri N, Ephraim PL, Scialla JJ, Sozio SM, Crews DC, Shafi T, Miskulin DC, Liu J, St Peter W, Jaar BG, Wu AW, Powe NR, Navaneethan SD, Bandeen-Roche K: Comparative effectiveness studies to improve clinical outcomes in end stage renal disease: the DEcIDE patient outcomes in end stage renal disease study. BMC Nephrol 13(1):167, 2012.

Munro CA, Winicki JM, Schretlen DJ, Gower EW, Turano KA, Munoz B, Keay L, Bandeen-Roche K, West SK: Sex differences in cognition in healthy elderly individuals. Neuropsychol Dev Cogn B Aging Neuropsychol Cogn 19(6):759-68, 2012.

Xue QL, Bandeen-Roche K, Mielenz TJ, Seplaki CL, Szanton SL, Thorpe RJ, Kalyani RR, Chaves PH, Dam TT, Ornstein K, Roychoudhury A, Varadhan R, Yao W, Fried LP: Patterns of 12-year change in physical activity levels in community-dwelling older women: can modest levels of physical activity help older women live longer? American Journal of Epidemiology 176(6):534-43, 2012.

Gross AL, Inouye SK, Rebok GW, Brandt J, Crane PK, Parisi JM, Tommet D, Bandeen-Roche K, Carlson MC, Jones RN: Parallel but not equivalent: challenges and solutions for repeated assessment of cognition over time. Journal of Clinical & Experimental Neuropsychology 34(7):758-72, 2012.

Mielke MM, Bandaru VV, Haughey NJ, Xia J, Fried LP, Yasar S, Albert M, Varma V, Harris G, Schneider EB, Rabins PV, Bandeen-Roche K, Lyketsos CG, Carlson MC: Serum ceramides increase the risk of Alzheimer disease: The Women's Health and Aging Study II. Neurology 79(7):633-41, 2012.

Nicklett EJ, Semba RD, Simonsick EM, Szanton S, Bandeen-Roche K, Ferrucci L, Guralnik JM, Fried LP: Diet quality and social support: factors associated with serum carotenoid concentrations among older disabled women (the Women's Health and Aging Study). Journal of Nutrition, Health & Aging 16(6):511-8, 2012.

Nestadt G, Di C, Samuels JF, Cheng YJ, Bienvenu OJ, Reti IM, Costa P, Eaton WW, Bandeen-Roche K: Concordance between personality disorder assessment methods. Psychological Medicine 42(3):657-67, 2012.

Carlson MC, Parisi JM, Xia J, Xue QL, Rebok GW, Bandeen-Roche K, Fried LP: Lifestyle activities and memory: variety may be the spice of life. The Women's Health and Aging Study II. Journal of the International Neuropsychological Society 18(2):286-94, 2012.

Eckel SP, Bandeen-Roche K, Chaves PH, Fried LP, Louis TA: Surrogate screening models for the low physical activity criterion of frailty. Aging Clinical and Experimental Research 23(3):209-16, 2011.

Freedman VA, Kasper JD, Cornman JC, Agree EM, Bandeen-Roche K, Mor V, Spillman BC, Wallace R, Wolf DA: Validation of new measures of disability and functioning in the national health and aging trends study. Journals of Gerontology Series A 66(9):1013-21, 2011.

Nestadt G, Di C, Samuels JF, Cheng YJ, Bienvenu OJ, Reti IM, Costa P, Eaton WW, Bandeen-Roche K: Concordance between personality disorder assessment methods. Psychological Medicine Aug 24:1-11, 2011.

Di CZ, Bandeen-Roche K: Multilevel latent class models with dirichlet mixing distribution. Biometrics 67(1):86-96, 2011.

Reti IM, Xu JZ, Yanofski J, McKibben J, Uhart M, Cheng YJ, Zandi P, Bienvenu OJ, Samuels J, Willour V, Kasch-Semenza L, Costa P, Bandeen-Roche K, Eaton WW, Nestadt G: Monoamine oxidase A regulates antisocial personality in whites with no history of physical abuse. Comprehensive Psychiatry 52(2):188-94, 2011.

Lee BK, Glass TA, James BD, Bandeen-Roche K, Schwartz BS: Neighborhood psychosocial environment, apolipoprotein e genotype, and cognitive function in older adults. Archives of General Psychiatry 68(3):314-21, 2011.

Leoutsakos JM, Bandeen-Roche K, Garrett-Mayer E, Zandi PP: Incorporating scientific knowledge into phenotype development: Penalized latent class regression. Statistics in Medicine 30(7):784-98, 2011.

Lee HB, Bienvenu OJ, Cho SJ, Ramsey CM, Bandeen-Roche K, Eaton WW, Nestadt G: Personality disorders and traits as predictors of incident cardiovascular disease: findings from the 23-year follow-up of the Baltimore ECA study. Psychosomatics 51(4):289-96, 2010.

Makary MA, Segev DL, Pronovost PJ, Syin D, Bandeen-Roche K, Patel P, Takenaga R, Devgan L, Holzmueller CG, Tian J, Fried LP: Frailty as a predictor of surgical outcomes in older patients. Journal of the American College of Surgeons 210(6):901-8, 2010.

Leoutsakos JM, Zandi PP, Bandeen-Roche K, Lyketsos CG: Searching for valid psychiatric phenotypes: discrete latent variable models. International Journal of Methods in Psychiatric Research 19(2):63-73, 2010.

Sourial N, Wolfson C, Zhu B, Quail J, Fletcher J, Karunananthan S, Bandeen-Roche K, Beland F, Bergman H: Correspondence analysis is a useful tool to uncover the relationships among categorical variables. Journal of Clinical Epidemiology 63(6):638-46, 2010.

Sourial N, Wolfson C, Bergman H, Zhu B, Karunananthan S, Quail J, Fletcher J, Weiss D, Bandeen-Roche K, Beland F: A correspondence analysis revealed frailty deficits aggregate and are multidimensional. Journal of Clinical Epidemiology 63(6):647-54, 2010.

Munro CA, Jefferys J, Gower EW, Munoz BE, Lyketsos CG, Keay L, Turano KA, Bandeen-Roche K, West SK: Predictors of lane-change errors in older drivers. Journal of the American Geriatrics Society 58(3):457-64, 2010.

Weisfeldt ML, Sugarman J, Bandeen-Roche K: Toward definitive trials and improved outcomes of cardiac arrest. Circulation 121(14):1586-8, 2010.

Nestadt G, Di C, Samuels JF, Bienvenu OJ, Reti IM, Costa P, Eaton WW, Bandeen-Roche K: The stability of DSM personality disorders over twelve to eighteen years. Journal of Psychiatric Research 44(1):1-7, 2010.

Cheng Y, Fine JP, Bandeen-Roche K: Association analyses of clustered competing risks data via cross hazard ratio. Biostatistics 11(1):82-92, 2010.

West SK, Hahn DV, Baldwin KC, Duncan DD, Munoz BE, Turano KA, Hassan SE, Munro CA, Bandeen-Roche K: Older drivers and failure to stop at red lights. Journals of Gerontology Series A 65(2):179-83, 2010.

Matteini AM, Walston JD, Bandeen-Roche K, Arking DE, Allen RH, Fried LP, Chakravarti A, Stabler SP, Fallin MD: Transcobalamin-II variants, decreased vitamin B12 availability and increased risk of frailty. Journal of Nutrition, Health and Aging 14(1):73-7, 2010.

Bandeen-Roche K, Walston JD, Huang Y, Semba RD, Ferrucci L: Measuring systemic inflammatory regulation in older adults: evidence and utility. Rejuvenation Research 12(6):403-10, 2009.

Boyd CM, Ricks M, Fried LP, Guralnik JM, Xue QL, Xia J, Bandeen-Roche K: Functional decline and recovery of activities of daily living in hospitalized, disabled older women: the Women's Health and Aging Study I. Journal of the American Geriatrics Society 57(10):1757-66, 2009.

Bandeen-Roche K, Glass TA, Bolla KI, Todd AC, Schwartz BS: Cumulative lead dose and cognitive function in older adults. Epidemiology 20(6):831-9, 2009.

Nestadt G, Di CZ, Riddle MA, Grados MA, Greenberg BD, Fyer AJ, McCracken JT, Rauch SL, Murphy DL, Rasmussen SA, Cullen B, Pinto A, Knowles JA, Piacentini J, Pauls DL, Bienvenu OJ, Wang Y, Liang KY, Samuels JF, Roche KB: Obsessive-compulsive disorder: subclassification based on co-morbidity. Psychological Medicine 39(9):1491-501, 2009.

Fried LP, Xue QL, Cappola AR, Ferrucci L, Chaves P, Varadhan R, Guralnik JM, Leng SX, Semba RD, Walston JD, Blaum CS, Bandeen-Roche K: Nonlinear multisystem physiological dysregulation associated with frailty in older women: implications for etiology and treatment. Journals of Gerontology Series A 64(10):1049-57, 2009.

Brandt J, Aretouli E, Neijstrom E, Samek J, Manning K, Albert MS, Bandeen-Roche K: Selectivity of executive function deficits in mild cognitive impairment. Neuropsychology 23(5):607-18, 2009.

Keay L, Jasti S, Munoz B, Turano KA, Munro CA, Duncan DD, Baldwin K, Bandeen-Roche KJ, Gower EW, West SK: Urban and rural differences in older drivers' failure to stop at stop signs. Accident; Analysis and Prevention 41(5):995-1000, 2009.

Sherrill JT, Sommers DI, Nierenberg AA, Leon AC, Arndt S, Bandeen-Roche K, Greenhouse J, Guthrie D, Normand SL, Phillips KA, Shear MK, Woolson R: Integrating statistical and clinical research elements in intervention-related grant applications: summary from an NIMH workshop. Academic Psychiatry 33(3):221-8, 2009.

Mielke MM, Kozauer NA, Chan KC, George M, Toroney J, Zerrate M, Bandeen-Roche K, Wang MC, Vanzijl P, Pekar JJ, Mori S, Lyketsos CG, Albert M: Regionally-specific diffusion tensor imaging in mild cognitive impairment and Alzheimer's disease. NeuroImage 46(1):47-55, 2009.

Riley AW, Coiro MJ, Broitman M, Colantuoni E, Hurley KM, Bandeen-Roche K, Miranda J: Mental health of children of low-income depressed mothers: influences of parenting, family environment, and raters. Psychiatric Services 60(3):329-36, 2009.

Langbaum JB, Rebok GW, Bandeen-Roche K, Carlson MC: Predicting memory training response patterns: results from ACTIVE. Journals of Gerontology Series B 64(1):14-23, 2009.

Glass TA, Bandeen-Roche K, McAtee M, Bolla K, Todd AC, Schwartz BS: Neighborhood psychosocial hazards and the association of cumulative lead dose with cognitive function in older adults. American Journal of Epidemiology 169(6):683-92, 2009.

Szanton SL, Allen JK, Seplaki CL, Bandeen-Roche K, Fried LP: Allostatic load and frailty in the Women's Health and Aging Studies. Biological Research for Nursing 10(3):248-56, 2009.

 

 

 

 

Joshua Betz Description: C:\Users\margo\my_doc\My Web Sites\Publication\UP_AR~11.gif(go to top of document)

Chen DS, Genther DJ, Betz J, Lin FR: Association between hearing impairment and self-reported difficulty in physical functioning. J Am Geriatr Soc 62(5):850-6, 2014.

Choi JS, Contrera KJ, Betz JF, Blake CR, Niparko JK, Lin FR: Long-term use of cochlear implants in older adults: results from a large consecutive case series. Otol Neurotol 35(5):815-20, 2014.

Contrera KJ, Choi JS, Blake CR, Betz JF, Niparko JK, Lin FR: Rates of long-term cochlear implant use in children. Otol Neurotol 35(3):426-30, 2014.

Tchopev Z, Hiller M, Zhuo J, Betz J, Gullapalli R, Sheth KN: Prediction of poor outcome in cerebellar infarction by diffusion MRI. Neurocrit Care 19(3):276-82, 2013.

Mener DJ, Betz J, Genther DJ, Chen D, Lin FR: Hearing loss and depression in older adults. J Am Geriatr Soc 61(9):1627-9, 2013.

Genther DJ, Frick KD, Chen D, Betz J, Lin FR: Association of hearing loss with hospitalization and burden of disease in older adults. JAMA 309(22):2322-4, 2013.

Betz J, Zhuo J, Roy A, Shanmuganathan K, Gullapalli RP: Prognostic value of diffusion tensor imaging parameters in severe traumatic brain injury. Journal of Neurotrauma 29(7):1292-305, 2012.

 

 

Brian Caffo Description: C:\Users\margo\my_doc\My Web Sites\Publication\UP_AR~11.gif(go to top of document)

Shmuelof L, Yang J, Caffo B, Mazzoni P, Krakauer JW: The neural correlates of learned motor acuity. J Neurophysiol 112(4):971-80, 2014.

Schreiber JM, Lanham DC, Trescher WH, Sparks SE, Wassif CA, Caffo BS, Porter FD, Tierney E, Gropman AL, Ewen JB: Variations in EEG discharges predict ADHD severity within individual Smith-Lemli-Opitz patients. Neurology 83(2):151-9, 2014.

Sidhu G, Caffo B: MONEYBaRL: Exploiting pitcher decision-making using Reinforcement Learning. Ann Appl Stat 8(2):926-955, 2014.

Coughlin JM, Wang Y, Ma S, Yue C, Kim PK, Adams AV, Roosa HV, Gage KL, Stathis M, Rais R, Rojas C, McGlothan JL, Watkins CC, Sacktor N, Guilarte TR, Zhou Y, Sawa A, Slusher BS, Caffo B, Kassiou M, Endres CJ, Pomper MG: Regional brain distribution of translocator protein using [(11)C]DPA-713 PET in individuals infected with HIV. J Neurovirol 20(3):219-32, 2014.

Muschelli J, Nebel MB, Caffo BS, Barber AD, Pekar JJ, Mostofsky SH: Reduction of motion-related artifacts in resting state fMRI using aCompCor. Neuroimage 96C:22-35, 2014.

Risk BB, Matteson DS, Ruppert D, Eloyan A, Caffo BS: An evaluation of independent component analyses with an application to resting-state fMRI. Biometrics 70(1):224-36, 2014.

Eloyan A, Li S, Muschelli J, Pekar JJ, Mostofsky SH, Caffo BS: Analytic programming with FMRI data: a quick-start guide for statisticians using R. PLoS One 9(2):e89470, 2014.

Thom KA, Li S, Custer M, Preas MA, Rew CD, Cafeo C, Leekha S, Caffo BS, Scalea TM, Lissauer ME: Successful implementation of a unit-based quality nurse to reduce central line-associated bloodstream infections. Am J Infect Control 42(2):139-43, 2014.

Nebel MB, Joel SE, Muschelli J, Barber AD, Caffo BS, Pekar JJ, Mostofsky SH: Disruption of functional organization within the primary motor cortex in children with autism. Hum Brain Mapp 35(2):567-80, 2014.

Bobb JF, Schwartz BS, Davatzikos C, Caffo B: Cross-sectional and longitudinal association of body mass index and brain volume. Hum Brain Mapp 35(1):75-88, 2014.

Choi L, Crainiceanu CM, Caffo BS: Practical recommendations for population PK studies with sampling time errors. Eur J Clin Pharmacol 69(12):2055-64, 2013.

Shou H, Eloyan A, Lee S, Zipunnikov V, Crainiceanu AN, Nebel MB, Caffo B, Lindquist MA, Crainiceanu CM: Quantifying the reliability of image replication studies: The image intraclass correlation coefficient (I2C2). Cogn Affect Behav Neurosci 13(4):714-724, 2013.

Leyva FJ, Bakshi RP, Fuchs EJ, Li L, Caffo BS, Goldsmith AJ, Ventuneac A, Carballo-Diguez A, Du Y, Leal JP, Lee LA, Torbenson MS, Hendrix CW: Isoosmolar enemas demonstrate preferential gastrointestinal distribution, safety, and acceptability compared with hyperosmolar and hypoosmolar enemas as a potential delivery vehicle for rectal microbicides. AIDS Res Hum Retroviruses 29(11):1487-95, 2013.

Boca S, Corrada Bravo H, Caffo B, Leek JT, Parmigiani G: A decision-theory approach to interpretable set analysis for high-dimensional data. Biometrics 69(3):614-623, 2013.

Griswold ME, Swihart BJ, Caffo BS, Zeger SL: Practical marginalized multilevel models. Stat 2(1):129-142, 2013.

Leekha S, Li S, Thom KA, Preas MA, Caffo BS, Morgan DJ, Harris AD: Comparison of total hospital-acquired bloodstream infections to central line-associated bloodstream infections and implications for outcome measures in infection control. Infect Control Hosp Epidemiol 34(9):984-6, 2013.

Lindquist MA, Caffo B, Crainiceanu C: Ironing out the statistical wrinkles in "ten ironic rules." Neuroimage 81:499-502, 2013.

Langrock R, Swihart BJ, Caffo BS, Punjabi NM, Crainiceanu CM: Combining hidden Markov models for comparing the dynamics of multiple sleep electroencephalograms. Stat Med 32(19):3342-56, 2013.

Barber AD, Caffo BS, Pekar JJ, Mostofsky SH: Effects of working memory demand on neural mechanisms of motor response selection and control. J Cogn Neurosci 25(8):1235-1248, 2013.

Eloyan A, Crainiceanu CM, Caffo BS: Likelihood-based population independent component analysis. Biostatistics 14(3):514-27, 2013.

Ozturk A, Aygun N, Smith SA, Caffo B, Calabresi PA, Reich DS: Axial 3D gradient-echo imaging for improved multiple sclerosis lesion detection in the cervical spinal cord at 3T. Neuroradiology 55(4):431-9, 2013.

Lauzon CB, Crainiceanu C, Caffo BC, Landman BA: Assessment of bias in experimentally measured diffusion tensor imaging parameters using SIMEX. Magn Reson Med 69(3):891-902, 2013.

Cervenka MC, Franaszczuk PJ, Crone NE, Hong B, Caffo BS, Bhatt P, Lenz FA, Boatman-Reich D: Reliability of early cortical auditory gamma-band responses. Clin Neurophysiol 124(1):70-82, 2013.

Barber AD, Caffo BS, Pekar JJ, Mostofsky SH: Developmental changes in within- and between-network connectivity between late childhood and adulthood. Neuropsychologia 51(1):156-167, 2013.

Cao YJ, Caffo BS, Fuchs EJ, Lee LA, Du Y, Li L, Bakshi RP, Macura K, Khan WA, Wahl RL, Grohskopf LA, Hendrix CW: Quantification of the spatial distribution of rectally applied surrogates for microbicide and semen in colon with SPECT and magnetic resonance imaging. Br J Clin Pharmacol 74(6):1013-22, 2012.

Sasaki T, Miller CF, Hansford R, Yang J, Caffo BS, Zviman MM, Henrikson CA, Marine JE, Spragg D, Cheng A, Tandri H, Sinha S, Kolandaivelu A, Zimmerman SL, Bluemke DA, Tomaselli GF, Berger RD, Calkins H, Halperin HR, Nazarian S: Myocardial structural associations with local electrograms: a study of postinfarct ventricular tachycardia pathophysiology and magnetic resonance-based noninvasive mapping. Circ Arrhythm Electrophysiol 5(6):1081-90, 2012.

Tighe SK, Reading SA, Rivkin P, Caffo B, Schweizer B, Pearlson G, Potash JB, Depaulo JR, Bassett SS: Total white matter hyperintensity volume in bipolar disorder patients and their healthy relatives. Bipolar Disord 14(8):888-93, 2012.

Bai J, Goldsmith J, Caffo B, Glass TA, Crainiceanu CM: Movelets: a dictionary of movement. Electron J Stat 6:559-578, 2012.

Aurora RN, Crainiceanu C, Caffo B, Punjabi NM: Sleep-disordered breathing and caffeine consumption: results of a community-based study. Chest 142(3):631-8, 2012.

Li S, Eloyan A, Joel S, Mostofsky S, Pekar J, Bassett SS, Caffo B: Analysis of group ICA-based connectivity measures from fMRI: application to Alzheimer's disease. PLoS One 7(11):e49340, 2012.

Jedynak BM, Lang A, Liu B, Katz E, Zhang Y, Wyman BT, Raunig D, Jedynak CP, Caffo B, Prince JL for the Alzheimer's Disease Neuroimaging Initiative: A computational neurodegenerative disease progression score: Method and results with the Alzheimer's disease neuroimaging initiative cohort. Neuroimage 63(3):1478-1486, 2012.

Eloyan A, Muschelli J, Nebel MB, Liu H, Han F, Zhao T, Barber AD, Joel S, Pekar JJ, Mostofsky SH, Caffo B: Automated diagnoses of attention deficit hyperactive disorder using magnetic resonance imaging. Frontiers in Systems Neuroscience 6:61, 2012.

Swihart BJ, Caffo BS, Crainiceanu CM, Punjabi NM: Mixed effect Poisson log-linear models for clinical and epidemiological sleep hypnogram data. Statistics in Medicine 31(9):855-70, 2012.

Thom KA, Howard T, Sembajwe S, Harris AD, Strassle P, Caffo BS, Carroll KC, Johnson JK: Comparison of swab and sponge methodologies for identification of Acinetobacter baumannii from the hospital environment. Journal of Clinical Microbiology 50(6):2140-1, 2012.

Yang X, Lauzon CB, Crainiceanu C, Caffo B, Resnick SM, Landman BA: Biological parametric mapping accounting for random regressors with regression calibration and model II regression. Neuroimage 62(3):1761-1768, 2012.

Shiee N, Bazin PL, Zackowski KM, Farrell SK, Harrison DM, Newsome SD, Ratchford JN, Caffo BS, Calabresi PA, Pham DL, Reich DS: Revisiting brain atrophy and its relationship to disability in multiple sclerosis. PLoS One 7(5):e37049, 2012.

Barber AD, Srinivasan P, Joel SE, Caffo BS, Pekar JJ, Mostofsky SH: Motor "dexterity"?: Evidence that left hemisphere lateralization of motor circuit connectivity is associated with better motor performance in children. Cerebral Cortex 22(1):51-9, 2012.

Lauzon CB, Caffo BC, Landman BA: Towards automatic quantitative quality control for MRI. Proc Soc Photo Opt Instrum Eng 8314, 2012.

Goldsmith J, Crainiceanu CM, Caffo B, Reich D: Longitudinal penalized functional regression for cognitive outcomes on neuronal tract measurements. Applied Statistics 61(3):453-469, 2012.

Louissaint NA, Fuchs EJ, Bakshi RP, Nimmagadda S, Du Y, Macura KJ, King KE, Wahl R, Goldsmith AJ, Caffo B, Cao YJ, Anderson J, Hendrix CW: Distribution of cell-free and cell-associated HIV surrogates in the female genital tract after simulated vaginal intercourse. Journal of Infectious Diseases 205(5):725-32, 2012.

Ellington LE, Gilman RH, Tielsch JM, Steinhoff M, Figueroa D, Rodriguez S, Caffo B, Tracey B, Elhilali M, West J, Checkley W: Computerised lung sound analysis to improve the specificity of paediatric pneumonia diagnosis in resource-poor settings: protocol and methods for an observational study. BMJ Open 2(1):e000506, 2012.

Louissaint NA, Nimmagadda S, Fuchs EJ, Bakshi RP, Cao YJ, Lee LA, Goldsmith J, Caffo BS, Du Y, King KE, Menendez FA, Torbenson MS, Hendrix CW: Distribution of cell-free and cell-associated HIV surrogates in the colon after simulated receptive anal intercourse in men who have sex with men. Journal of Acquired Immune Deficiency Syndromes 59(1):10-7, 2012.

Zipunnikov V, Caffo B, Yousem DM, Davatzikos C, Schwartz BS, Crainiceanu C: Multilevel functional principal component analysis for high-dimensional data. Journal of Computational and Graphical Statistics 20(4):852-873, 2011.

Massie AB, Caffo B, Gentry SE, Hall EC, Axelrod DA, Lentine KL, Schnitzler MA, Gheorghian A, Salvalaggio PR, Segev DL: MELD exceptions and rates of waiting list outcomes. American Journal of Transplantation 11(11):2362-71, 2011.

Goldsmith J, Bobb J, Crainiceanu CM, Caffo B, Reich D: Penalized functional regression. Journal of Computational and Graphical Statistics 20(4):830-851, 2011.

Aurora RN, Caffo B, Crainiceanu C, Punjabi NM: Correlating subjective and objective sleepiness: revisiting the association using survival analysis. Sleep 34(12):1707-14, 2011.

Crainiceanu CM, Caffo BS, Luo S, Zipunnikov V, Punjabi NM: Population value decomposition, a framework for the analysis of image populations. Journal of the American Statistical Association 106(495): 775-790, 2011.

James BD, Caffo B, Stewart WF, Yousem D, Davatzikos C, Schwartz BS: Genetic risk factors for longitudinal changes in structural MRI in former organolead workers. Journal of Aging Research 2011:362189, 2011.

Lauzon CB, Asman AJ, Crainiceanu C, Caffo BC, Landman BA: Assessment of bias for MRI diffusion tensor imaging using SIMEX. Medical Image Computing and Computer-Assisted Intervention 14(Pt 2):107-15, 2011.

Nazarian S, Hansford R, Roguin A, Goldsher D, Zviman MM, Lardo AC, Caffo BS, Frick KD, Kraut MA, Kamel IR, Calkins H, Berger RD, Bluemke DA, Halperin HR: A prospective evaluation of a protocol for magnetic resonance imaging of patients with implanted cardiac devices. Annals of Internal Medicine 155(7):415-24, 2011.

Choi L, Caffo BS, Kohli U, Pandharipande P, Kurnik D, Ely EW, Stein CM: A Bayesian hierarchical nonlinear mixture model in the presence of artifactual outliers in a population pharmacokinetic study. Journal of Pharmacokinetics and Pharmacodynamics 38(5):613-36, 2011.

Zipunnikov V, Caffo B, Yousem DM, Davatzikos C, Schwartz BS, Crainiceanu C: Functional principal component model for high-dimensional brain imaging. Neuroimage 58(3):772-84, 2011.

Krauss GL, Caffo B, Chang YT, Hendrix CW, Chuang K: Assessing bioequivalence of generic antiepilepsy drugs. Annals of Neurology 70(2):221-8, 2011.

Goldsmith J, Caffo B, Crainiceanu C, Reich D, Du Y, Hendrix C: Nonlinear tube-fitting for the analysis of anatomical and functional structures. Annals of Applied Statistics 5(1):337-363, 2011.

Shinohara RT, Crainiceanu CM, Caffo BS, Gaitan MI, Reich DS: Population-wide principal component-based quantification of blood-brain-barrier dynamics in multiple sclerosis. Neuroimage 57(4):1430-46, 2011.

Goldsmith J, Crainiceanu CM, Caffo BS, Reich DS: Penalized functional regression analysis of white-matter tract profiles in multiple sclerosis. Neuroimage 57(2):431-9, 2011.

Joel SE, Caffo BS, van Zijl PC, Pekar JJ: On the relationship between seed-based and ICA-based measures of functional connectivity. Magnetic Resonance in Medicine 66(3):644-57, 2011.

Mondul AM, Caffo B, Platz EA: Minimal detection bias in the inverse association between statin drug use and advanced prostate cancer risk: a simulation study. Cancer Epidemiology 35(4):e6-11, 2011.

Nazarian S, Wagner KR, Caffo BS, Tomaselli GF: Clinical predictors of conduction disease progression in type I myotonic muscular dystrophy. Pacing & Clinical Electrophysiology 34(2):171-6, 2011.

Harrison DM, Caffo BS, Shiee N, Farrell JA, Bazin PL, Farrell SK, Ratchford JN, Calabresi PA, Reich DS: Longitudinal changes in diffusion tensor-based quantitative MRI in multiple sclerosis. Neurology 76(2):179-86, 2011.

Li X, Caffo BS: Comparison of proportions for composite endpoints with missing components. Journal of Biopharmaceutical Statistics 21(2):271-81, 2011.

Hedlin H, Caffo B, Mahfoud Z, Bassett SS: Covariate-adjusted nonparametric analysis of magnetic resonance images using Markov chain Monte Carlo. Statistics & Its Interface 3(1):113-123, 2010.

Caffo B, Diener-West M, Punjabi NM, Samet J: A novel approach to prediction of mild obstructive sleep disordered breathing in a population-based sample: the Sleep Heart Health Study. Sleep 33(12):1641-8, 2010.

Laffan A, Caffo B, Swihart BJ, Punjabi NM: Utility of sleep stage transitions in assessing sleep continuity. Sleep 33(12):1681-6, 2010.

Wu H, Caffo B, Jaffee HA, Irizarry RA, Feinberg AP: Redefining CpG islands using hidden Markov models. Biostatistics 11(3):499-514, 2010.

Swihart BJ, Caffo B, James BD, Strand M, Schwartz BS, Punjabi NM: Lasagna plots: a saucy alternative to spaghetti plots. Epidemiology 21(5):621-5, 2010.

Nazarian S, Bluemke DA, Wagner KR, Zviman MM, Turkbey E, Caffo BS, Shehata M, Edwards D, Butcher B, Calkins H, Berger RD, Halperin HR, Tomaselli GF: QRS prolongation in myotonic muscular dystrophy and diffuse fibrosis on cardiac magnetic resonance. Magnetic Resonance in Medicine 64(1):107-114, 2010.

Caffo BS, Crainiceanu CM, Verduzco G, Joel S, Mostofsky SH, Bassett SS, Pekar JJ: Two-stage decompositions for the analysis of functional connectivity for fMRI with application to Alzheimer's disease risk. Neuroimage 51(3):1140-9, 2010.

Boatman-Reich D, Franaszczuk PJ, Korzeniewska A, Caffo B, Ritzl EK, Colwell S, Crone NE: Quantifying auditory event-related responses in multichannel human intracranial recordings. Frontiers in Computational Neuroscience 19;4:4, 2010.

Schwartz BS, Caffo B, Stewart WF, Hedlin H, James BD, Yousem D, Davatzikos C: Evaluation of cumulative lead dose and longitudinal changes in structural magnetic resonance imaging in former organolead workers. Journal of Occupational and Environmental Medicine 52(4):407-14, 2010.

Segev DL, Muzaale AD, Caffo BS, Mehta SH, Singer AL, Taranto SE, McBride MA, Montgomery RA: Perioperative mortality and long-term survival following live kidney donation. Journal of the American Medical Association 303(10):959-66, 2010.

Ozturk A, Smith SA, Gordon-Lipkin EM, Harrison DM, Shiee N, Pham DL, Caffo BS, Calabresi PA, Reich DS: MRI of the corpus callosum in multiple sclerosis: association with disability. Multiple Sclerosis 16(2):166-77, 2010.

Caffo B, Swihart B, Laffan A, Crainiceanu C, Punjabi N: An overview of observational sleep research with application to sleep stage transitioning. Chance 22(1):10-15, 2009.

Lauzon C, Caffo B: Easy multiplicity control in equivalence testing using two one-sided tests. The American Statistician 63(2):147-154, 2009.

Crainiceanu CM, Caffo BS, Di CZ, Punjabi NM: Nonparametric signal extraction and measurement error in the analysis of electroencephalographic activity during sleep. Journal of the American Statistical Association 104(486):541-555, 2009.

Yousem DM, Yassa MA, Cristinzio C, Kusevic I, Mohamed M, Caffo BS, Bassett SS: Intelligence and medial temporal lobe function in older adults: a functional MR imaging-based investigation. American Journal of Neuroradiology 30(8):1477-81, 2009.

Mostofsky SH, Powell SK, Simmonds DJ, Goldberg MC, Caffo B, Pekar JJ: Decreased connectivity and cerebellar activity in autism during motor task performance. Brain 132(Pt 9):2413-25, 2009.

Punjabi NM, Caffo BS, Goodwin JL, Gottlieb DJ, Newman AB, O'Connor GT, Rapoport DM, Redline S, Resnick HE, Robbins JA, Shahar E, Unruh ML, Samet JM: Sleep-disordered breathing and mortality: a prospective cohort study. PLoS Medicine 6(8):e1000132, 2009.

Reich DS, Smith SA, Gordon-Lipkin EM, Ozturk A, Caffo BS, Balcer LJ, Calabresi PA: Damage to the optic radiation in multiple sclerosis is associated with retinal injury and visual disability. Archives of Neurology 66(8):998-1006, 2009.

O'Connor GT, Caffo B, Newman AB, Quan SF, Rapoport DM, Redline S, Resnick HE, Samet J, Shahar E: Prospective study of sleep-disordered breathing and hypertension: the Sleep Heart Health Study. American Journal of Respiratory and Critical Care Medicine 179(12):1159-64, 2009.

Chen S, Wang C, Eberly LE, Caffo BS, Schwartz BS: Adaptive control of the false discovery rate in voxel-based morphometry. Human Brain Mapping 30(7):2304-11, 2009.

Caffo BS, Liu D, Scharpf RB, Parmigiani G: Likelihood estimation of conjugacy relationships in linear models with applications to high-throughput genomics. International Journal of Biostatistics 5(1):Article 18, 2009.

Di C, Crainiceanu CM, Caffo BS, Punjabi NM: Multilevel functional principal component analysis. Annals of Applied Statistics 3(1): 458-488, 2009.

Su SC, Caffo B, Garrett-Mayer E, Bassett SS: Modified test statistics by inter-voxel variance shrinkage with an application to fMRI. Biostatistics 10(2):219-27, 2009.

Caffo B, Crainiceanu CM, Deng L, Hendrix CW: A case study in pharmacologic colon imaging using principal curves in single-photon emission computed tomography. Journal of the American Statistical Association 103(484): 1470-1480, 2008.

He X, Caffo BS, Frey EC: Toward realistic and practical ideal observer (IO) estimation for the optimization of medical imaging systems. IEEE Transactions on Medical Imaging 27(10):1535-43, 2008.

Swihart BJ, Caffo B, Bandeen-Roche K, Punjabi NM: Characterizing sleep structure using the hypnogram. Journal of Clinical Sleep Medicine 4(4):349-55, 2008.

Stamatakis K, Sanders MH, Caffo B, Resnick HE, Gottlieb DJ, Mehra R, Punjabi NM: Fasting glycemia in sleep disordered breathing: lowering the threshold on oxyhemoglobin desaturation. Sleep 31(7):1018-24, 2008.

Redgrave GW, Bakker A, Bello NT, Caffo BS, Coughlin JW, Guarda AS, McEntee JE, Pekar JJ, Reinblatt SP, Verduzco G, Moran TH: Differential brain activation in anorexia nervosa to Fat and Thin words during a Stroop task. Neuroreport 19(12):1181-1185, 2008.

Choi L, Caffo B, Rohde C: A survey of the likelihood approach to bioequivalence trials. Statistics in Medicine 27(24):4874-4894, 2008.

Cao YJ, Ndovi TT, Parsons TL, Guidos AM, Caffo B, Hendrix CW: Effect of semen sampling frequency on seminal antiretroviral drug concentration. Clinical Pharmacology and Therapeutics 83(6):848-56, 2008.

Scharfstein DO, Ryea JL, Caffo B: Accounting for within-patient correlation in assessing relative sensitivity of an adjunctive diagnostic test: application to lung cancer. Statistics in Medicine 27(12):2110-26, 2008.

Guilarte TR, Hammoud DA, McGlothan JL, Caffo BS, Foss CA, Kozikowski AP, Pomper MG: Dysregulation of glutamate carboxypeptidase II in psychiatric disease. Schizophrenia Research 99(1-3):324-32, 2008.

Cao YJ, Caffo B, Choi L, Radebaugh CL, Fuchs EJ, Hendrix CW: Noninvasive quantitation of drug concentration in prostate and seminal vesicles: improvement and validation with desipramine and aspirin. Journal of Clinical Pharmacology 48(2):176-83, 2008.

Caffo B, Chen S, Stewart W, Bolla K, Yousem D, Davatzikos C, Schwartz BS: Are brain volumes based on magnetic resonance imaging mediators of the associations of cumulative lead dose with cognitive function? American Journal of Epidemiology 167(4):429-37, 2008.

Zhang L, Samet J, Caffo B, Bankman I, Punjabi NM: Power spectral analysis of EEG activity during sleep in cigarette smokers. Chest 133(2):427-32, 2008.

Bowman FD, Caffo B, Bassett SS, Kilts C: A Bayesian hierarchical framework for spatial modeling of fMRI data. Neuroimage 39(1):146-56, 2008.

 

 

 

Gwendolyn Clemens   Description: C:\Users\margo\my_doc\My Web Sites\Publication\UP_AR~11.gif(go to top of document)

Bundy DG, Muschelli J, Clemens GD, Strouse JJ, Thompson RE, Casella JF, Miller MR: Ambulatory care connections of Medicaid-insured children with sickle cell disease. Pediatric Blood & Cancer 59(5):888-94, 2012.

 

 

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Brodsky MB, Gellar JE, Dinglas VD, Colantuoni E, Mendez-Tellez PA, Shanholtz C, Palmer JB, Needham DM: Duration of oral endotracheal intubation is associated with dysphagia symptoms in acute lung injury patients. J Crit Care 29(4):574-9, 2014.

Brown CH 4th, Savage WJ, Masear CG, Walston JD, Tian J, Colantuoni E, Hogue CW, Frank SM: Odds of transfusion for older adults compared to younger adults undergoing surgery. Anesth Analg 118(6):1168-78, 2014.

Schreiber MP, Colantuoni E, Bienvenu OJ, Neufeld KJ, Chen KF, Shanholtz C, Mendez-Tellez PA, Needham DM: Corticosteroids and transition to delirium in patients with acute lung injury. Crit Care Med 42(6):1480-6, 2014.

Needham DM, Wozniak AW, Hough CL, Morris PE, Dinglas VD, Jackson JC, Mendez-Tellez PA, Shanholtz C, Ely EW, Colantuoni E, Hopkins RO: Risk factors for physical impairment after acute lung injury in a national, multicenter study. Am J Respir Crit Care Med 189(10):1214-24, 2014.

Fan E, Dowdy DW, Colantuoni E, Mendez-Tellez PA, Sevransky JE, Shanholtz C, Himmelfarb CR, Desai SV, Ciesla N, Herridge MS, Pronovost PJ, Needham DM: Physical complications in acute lung injury survivors: a two-year longitudinal prospective study. Crit Care Med 42(4):849-59, 2014.

Kozlowski LJ, Kost-Byerly S, Colantuoni E, Thompson CB, Vasquenza KJ, Rothman SK, Billett C, White ED, Yaster M, Monitto CL: Pain prevalence, intensity, assessment and management in a hospitalized pediatric population. Pain Manag Nurs 15(1):22-35, 2014.

Bienvenu OJ, Gellar J, Althouse BM, Colantuoni E, Sricharoenchai T, Mendez-Tellez PA, Shanholtz C, Dennison CR, Pronovost PJ, Needham DM: Post-traumatic stress disorder symptoms after acute lung injury: a 2-year prospective longitudinal study. Psychol Med 43(12):2657-71, 2013.

Netzer G, Dowdy DW, Harrington T, Chandolu S, Dinglas VD, Shah NG, Colantuoni E, Mendez-Tellez PA, Shanholtz C, Hasday JD, Needham DM: Fever is associated with delayed ventilator liberation in acute lung injury. Ann Am Thorac Soc 10(6):608-15, 2013.

Mendez-Tellez PA, Dinglas VD, Colantuoni E, Ciesla N, Sevransky JE, Shanholtz C, Pronovost PJ, Needham DM: Factors associated with timing of initiation of physical therapy in patients with acute lung injury. J Crit Care 28(6):980-4, 2013.

Akshintala VS, Hutfless SM, Colantuoni E, Kim KJ, Khashab MA, Li T, Elmunzer BJ, Puhan MA, Sinha A, Kamal A, Lennon AM, Okolo PI, Palakurthy MK, Kalloo AN, Singh VK: Systematic review with network meta-analysis: pharmacological prophylaxis against post-ERCP pancreatitis. Aliment Pharmacol Ther 38(11-12):1325-37, 2013.

Rinke ML, Bundy DG, Chen AR, Milstone AM, Colantuoni E, Pehar M, Herpst C, Fratino L, Miller MR: Central line maintenance bundles and CLABSIs in ambulatory oncology patients. Pediatrics 132(5):e1403-12, 2013.

Park S, Choi BY, Wang Y, Colantuoni E, Gittelsohn J: School and neighborhood nutrition environment and their association with students' nutrition behaviors and weight status in Seoul, South Korea. J Adolesc Health 53(5):655-662.e12, 2013.

Murphy DJ, Needham DM, Netzer G, Zeger SL, Colantuoni E, Ness P, Pronovost PJ, Berenholtz SM: RBC transfusion practices among critically ill patients: has evidence changed practice? Crit Care Med 41(10):2344-2353, 2013.

Rinke ML, Milstone AM, Chen AR, Mirski K, Bundy DG, Colantuoni E, Pehar M, Herpst C, Miller MR: Ambulatory pediatric oncology CLABSIs: Epidemiology and risk factors. Pediatr Blood Cancer 60(11):1882-9, 2013.

Needham DM, Dinglas VD, Morris PE, Jackson JC, Hough CL, Mendez-Tellez PA, Wozniak AW, Colantuoni E, Ely EW, Rice TW, Hopkins RO, NIH NHLBI ARDS Network: Physical and cognitive performance of patients with acute lung injury 1 year after initial trophic versus full enteral feeding. EDEN Trial Follow-up. Am J Respir Crit Care Med 188(5):567-76, 2013.

Stevenson JE, Colantuoni E, Bienvenu OJ, Sricharoenchai T, Wozniak A, Shanholtz C, Mendez-Tellez PA, Needham DM: General anxiety symptoms after acute lung injury: predictors and correlates. J Psychosom Res 75(3):287-93, 2013.

Rinke ML, Bundy DG, Milstone AM, Deuber K, Chen AR, Colantuoni E, Miller MR: Bringing central line-associated bloodstream infection prevention home: CLABSI definitions and prevention policies in home health care agencies. Jt Comm J Qual Patient Saf 39(8):361-370, 2013.

Tin A, Colantuoni E, Boerwinkle E, Kottgen A, Franceschini N, Astor BC, Coresh J, Kao WH: Using multiple measures for quantitative trait association analyses: application to estimated glomerular filtration rate. J Hum Genet 58(7):461-6, 2013.

Damluji A, Zanni JM, Mantheiy E, Colantuoni E, Kho ME, Needham DM: Safety and feasibility of femoral catheters during physical rehabilitation in the intensive care unit. J Crit Care 28(4):535.e9-535.e15, 2013.

Hager DN, Dinglas VD, Subhas S, Rowden AM, Neufeld KJ, Bienvenu OJ, Touradji P, Colantuoni E, Reddy DR, Brower RG, Needham DM: Reducing deep sedation and delirium in acute lung injury patients: a quality improvement project. Crit Care Med 41(6):1435-1442, 2013.

Dinglas VD, Colantuoni E, Ciesla N, Mendez-Tellez PA, Shanholtz C, Needham DM: Occupational therapy for patients with acute lung injury: factors associated with time to first intervention in the intensive care unit. Am J Occup Ther 67(3):355-362, 2013.

Kamdar BB, King LM, Collop NA, Sakamuri S, Colantuoni E, Neufeld KJ, Bienvenu OJ, Rowden AM, Touradji P, Brower RG, Needham DM: The effect of a quality improvement intervention on perceived sleep quality and cognition in a medical ICU. Crit Care Med 41(3):800-809, 2013.

Needham DM, Dinglas VD, Bienvenu OJ, Colantuoni E, Wozniak AW, Rice TW, Hopkins RO, NIH NHLBI ARDS Network: One year outcomes in patients with acute lung injury randomised to initial trophic or full enteral feeding: prospective follow-up of EDEN randomised trial. BMJ 346:f1532, 2013.

Dinglas VD, Gifford JM, Husain N, Colantuoni E, Needham DM: Quality of life before intensive care using EQ-5D: patient versus proxy responses. Crit Care Med 41(1):9-14, 2013.

Kowalski S, Colantuoni E, Lau B, Keruly J, McCaul ME, Hutton HE, Moore RD, Chander G: Alcohol consumption and CD4 T-cell count response among persons initiating antiretroviral therapy. J Acquir Immune Defic Syndr 61(4):455-61, 2012.

Winters B, Custer J, Galvagno SM Jr, Colantuoni E, Kapoor SG, Lee H, Goode V, Robinson K, Nakhasi A, Pronovost P, Newman-Toker D: Diagnostic errors in the intensive care unit: a systematic review of autopsy studies. BMJ Qual Saf 21(11):894-902, 2012.

Bembea MM, Schwartz JM, Shah N, Colantuoni E, Lehmann CU, Kickler T, Pronovost P, Strouse JJ: Anticoagulation monitoring during pediatric extracorporeal membrane oxygenation. ASIAO J 59(1):63-8, 2013.

Rinke ML, Chen AR, Bundy DG, Colantuoni E, Fratino L, Drucis KM, Panton SY, Kokoszka M, Budd AP, Milstone AM, Miller MR: Implementation of a central line maintenance care bundle in hospitalized pediatric oncology patients. Pediatrics 130(4):e996-e1004, 2012.

Fan E, Gifford JM, Chandolu S, Colantuoni E, Pronovost PJ, Needham DM: The functional comorbidity index had high inter-rater reliability in patients with acute lung injury. BMC Anesthesiology 12(1):21, 2012.

Kamdar BB, Shah PA, King LM, Kho ME, Zhou X, Colantuoni E, Collop NA, Needham DM: Patient-nurse interrater reliability and agreement of the Richards-Campbell sleep questionnaire. American Journal of Critical Care 21(4):261-9, 2012.

Needham DM, Colantuoni E, Mendez-Tellez PA, Dinglas VD, Sevransky JE, Dennison Himmelfarb CR, Desai SV, Shanholtz C, Brower RG, Pronovost PJ: Lung protective mechanical ventilation and two year survival in patients with acute lung injury: prospective cohort study. BMJ 344:e2124, 2012.

Duval-Arnould J, Mathews SC, Weeks K, Colantuoni E, Mukherjee A, Nundy S, Watson SR, Holzmueller CG, Lubomski LH, Goeschel CA, Pronovost PJ, Pham JC, Berenholtz SM: Using the Opportunity Estimator tool to improve engagement in a quality and safety intervention. Joint Communication Journal on Quality & Patient Safety 38(1):41-7, 2012.

Sepah YJ, Hatef E, Colantuoni E, Wang J, Shulman M, Adhi FI, Akhtar A, Ibrahim M, Khwaja A, Channa R, Sophie R, Bittencourt M, Heo J, Do DV, Nguyen QD: Macular sensitivity and fixation patterns in normal eyes and eyes with uveitis with and without macular edema. Journal of Ophthalmic Inflammation & Infection 2(2):65-73, 2012.

Bienvenu OJ, Colantuoni E, Mendez-Tellez PA, Dinglas VD, Shanholtz C, Husain N, Dennison CR, Herridge MS, Pronovost PJ, Needham DM: Depressive symptoms and impaired physical function after acute lung injury: a 2-year longitudinal study. American Journal of Respiratory and Critical Care Medicine 185(5):517-24, 2012.

Loyo M, Schussel J, Colantuoni E, Califano J, Brait M, Kang S, Koch WM, Sidransky D, Westra WH, Taube JM: Detection of Merkel cell virus and correlation with histologic presence of Merkel cell carcinoma in sentinel lymph nodes. British Journal of Cancer 106(7):1314-1319, 2012.

Niedner MF, Huskins WC, Colantuoni E, Muschelli J, Ii JM, Rice TB, Brilli RJ, Miller MR: Epidemiology of central line-associated bloodstream infections in the pediatric intensive care unit. Infection Control and Hospital Epidemiology 32(12):1200-8, 2011.

Colantuoni C, Lipska BK, Ye T, Hyde TM, Tao R, Leek JT, Colantuoni EA, Elkahloun AG, Herman MM, Weinberger DR, Kleinman JE: Temporal dynamics and genetic control of transcription in the human prefrontal cortex. Nature 478(7370):519-23, 2011.

Hatef E, Colantuoni E, Wang J, Ibrahim M, Shulman M, Adhi F, Sepah YJ, Channa R, Khwaja A, Nguyen QD, Do DV: The relationship between macular sensitivity and retinal thickness in eyes with diabetic macular edema. American Journal of Ophthalmology 152(3):400-405.e2, 2011.

Damluji A, Colantuoni E, Mendez-Tellez PA, Sevransky JE, Fan E, Shanholtz C, Wojnar M, Pronovost PJ, Needham DM: Short-term mortality prediction for acute lung injury patients: external validation of the Acute Respiratory Distress Syndrome Network prediction model. Critical Care Medicine 39(5):1023-8, 2011.

Waters HR, Korn R Jr, Colantuoni E, Berenholtz SM, Goeschel CA, Needham DM, Pham JC, Lipitz-Snyderman A, Watson SR, Posa P, Pronovost PJ: The business case for quality: economic analysis of the Michigan Keystone Patient Safety Program in ICUs. American Journal of Medical Quality 26(5):333-9, 2011.

Lipitz-Snyderman A, Needham DM, Colantuoni E, Goeschel CA, Marsteller JA, Thompson DA, Berenholtz SM, Lubomski LH, Watson S, Pronovost PJ: The ability of intensive care units to maintain zero central line-associated bloodstream infections. Archives of Internal Medicine 171(9):856-8, 2011.

Berenholtz SM, Pham JC, Thompson DA, Needham DM, Lubomski LH, Hyzy RC, Welsh R, Cosgrove SE, Sexton JB, Colantuoni E, Watson SR, Goeschel CA, Pronovost PJ: Collaborative cohort study of an intervention to reduce ventilator-associated pneumonia in the intensive care unit. Infection Control & Hospital Epidemiology 32(4):305-14, 2011.

Aslakson RA, Romig M, Galvagno SM, Colantuoni E, Cosgrove SE, Perl TM, Pronovost PJ: Effect of accounting for multiple concurrent catheters on central line-associated bloodstream infection rates: practical data supporting a theoretical concern. Infection Control & Hospital Epidemiology 32(4):121-4, 2011.

Martinez EA, Shore A, Colantuoni E, Herzer K, Thompson DA, Gurses AP, Marsteller JA, Bauer L, Goeschel CA, Cleary K, Pronovost PJ, Pham JC: Cardiac surgery errors: results from the UK National Reporting and Learning System. International Journal for Quality in Health Care 23(2):151-8, 2011.

Pham JC, Colantuoni E, Dominici F, Shore A, Macrae C, Scobie S, Fletcher M, Cleary K, Goeschel CA, Pronovost PJ: The harm susceptibility model: a method to prioritise risks identified in patient safety reporting systems. Quality & Safety in Health Care 19(5):440-5, 2010.

Colantuoni E, Surplus G, Hackman A, Arrighi HM, Brookmeyer R: Web-based application to project the burden of Alzheimer's disease. Alzheimer's & Dementia 6(5):425-8, 2010.

Sawyer M, Weeks K, Goeschel CA, Thompson DA, Berenholtz SM, Marsteller JA, Lubomski LH, Cosgrove SE, Winters BD, Murphy DJ, Bauer LC, Duval-Arnould J, Pham JC, Colantuoni E, Pronovost PJ: Using evidence, rigorous measurement, and collaboration to eliminate central catheter-associated bloodstream infections. Critical Care Medicine 38(8 Suppl):S292-8, 2010.

Mendez-Tellez PA, Damluji A, Ammerman D, Colantuoni E, Fan E, Sevransky JE, Shanholtz C, Gallant JE, Pronovost PJ, Needham DM: Human immunodeficiency virus infection and hospital mortality in acute lung injury patients. Critical Care Medicine 38(7):1530-5, 2010.

Needham DM, Korupolu R, Zanni JM, Pradhan P, Colantuoni E, Palmer JB, Brower RG, Fan E: Early physical medicine and rehabilitation for patients with acute respiratory failure: a quality improvement project. Archives of Physical Medicine and Rehabilitation 91(4):536-42, 2010.

Pronovost PJ, Goeschel CA, Colantuoni E, Watson S, Lubomski LH, Berenholtz SM, Thompson DA, Sinopoli DJ, Cosgrove S, Sexton JB, Marsteller JA, Hyzy RC, Welsh R, Posa P, Schumacher K, Needham D: Sustaining reductions in catheter related bloodstream infections in Michigan intensive care units: observational study. BMJ 340:c309, 2010.

Rinke ML, Bundy DG, Shore AD, Colantuoni E, Morlock LL, Miller MR: Pediatric antidepressant medication errors in a national error reporting database. Journal of Developmental and Behavioral Pediatrics 31(2):129-36, 2010.

Gifford JM, Husain N, Dinglas VD, Colantuoni E, Needham DM: Baseline quality of life before intensive care: a comparison of patient versus proxy responses. Critical Care Medicine 38(3):855-60, 2010.

Hodgkinson SC, Colantuoni E, Roberts D, Berg-Cross L, Belcher HM: Depressive symptoms and birth outcomes among pregnant teenagers. Journal of Pediatric and Adolescent Gynecology 23(1):16-22, 2010.

Berkow LC, Greenberg RS, Kan KH, Colantuoni E, Mark LJ, Flint PW, Corridore M, Bhatti N, Heitmiller ES: Need for emergency surgical airway reduced by a comprehensive difficult airway program. Anesthesia and Analgesia 109(6):1860-9, 2009.

Boin F, Franchini S, Colantuoni E, Rosen A, Wigley FM, Casciola-Rosen L: Independent association of anti-beta(2)-glycoprotein I antibodies with macrovascular disease and mortality in scleroderma patients. Arthritis and Rheumatism 60(8):2480-89, 2009.

Easley RB, Mulreany DG, Lancaster CT, Custer JW, Fernandez-Bustamante A, Colantuoni E, Simon BA: Redistribution of pulmonary blood flow impacts thermodilution-based extravascular lung water measurements in a model of acute lung injury. Anesthesiology 111(5):1065-74, 2009.

Joffe A, McNeely C, Colantuoni E, An MW, Wang W, Scharfstein D: Evaluation of school-based smoking-cessation interventions for self-described adolescent smokers. Pediatrics 124(2):e187-94, 2009.

Haut ER, Chang DC, Pierce CA, Colantuoni E, Efron DT, Haider AH, Cornwell EE 3rd, Pronovost PJ: Predictors of posttraumatic deep vein thrombosis (DVT): hospital practice versus patient factors-an analysis of the National Trauma Data Bank (NTDB). Journal of Trauma 66(4):994-9, 2009.

Newhouse RP, Morlock L, Pronovost P, Colantuoni E, Johantgen M: Rural hospital nursing: Better environments = shared vision and quality/safety engagement. Journal of Nursing Administration 39(4):189-95, 2009.

Pronovost PJ, Colantuoni E: Measuring preventable harm: helping science keep pace with policy. Journal of the American Medical Association 301(12):1273-5, 2009.

Magill SS, Swoboda SM, Shields CE, Colantuoni EA, Fothergill AW, Merz WG, Lipsett PA, Hendrix CW: The epidemiology of Candida colonization and invasive candidiasis in a surgical intensive care unit where fluconazole prophylaxis is utilized: follow-up to a randomized clinical trial. Annals of Surgery 249(4):657-65, 2009.

Riley AW, Coiro MJ, Broitman M, Colantuoni E, Hurley KM, Bandeen-Roche K, Miranda J: Mental health of children of low-income depressed mothers: influences of parenting, family environment, and raters. Psychiatric Services 60(3):329-36, 2009.

 

 

 

Ciprian Crainiceanu  Description: C:\Users\margo\my_doc\My Web Sites\Publication\UP_AR~11.gif(go to top of document)

He B, Bai J, Zipunnikov VV, Koster A, Caserotti P, Lange-Maia B, Glynn NW, Harris TB, Crainiceanu CM: Predicting human movement with multiple accelerometers using movelets. Med Sci Sports Exerc 46(9):1859-66, 2014.

Schrack JA, Zipunnikov V, Goldsmith J, Bai J, Simonsick EM, Crainiceanu C, Ferrucci L: Assessing the "physical cliff": detailed quantification of age-related differences in daily patterns of physical activity. J Gerontol A Biol Sci Med Sci 69(8):973-9, 2014.

Sweeney EM, Vogelstein JT, Cuzzocreo JL, Calabresi PA, Reich DS, Crainiceanu CM, Shinohara RT: A comparison of supervised machine learning algorithms and feature vectors for MS lesion segmentation using multimodal structural MRI. PLoS One 9(4):e95753, 2014.

Di C, Crainiceanu CM, Jank WS: Multilevel sparse functional principal component analysis. Stat 3(1):126-143, 2014.

Schrack JA, Zipunnikov V, Goldsmith J, Bandeen-Roche K, Crainiceanu CM, Ferrucci L: Estimating energy expenditure from heart rate in older adults: a case for calibration. PLoS One 9(4):e93520, 2014.

Scialla JJ, Kao WH, Crainiceanu C, Sozio SM, Oberai PC, Shafi T, Coresh J, Powe NR, Plantinga LC, Jaar BG, Parekh RS: Biomarkers of vascular calcification and mortality in patients with ESRD. Clin J Am Soc Nephrol 9(4):745-55, 2014.

Goldsmith J, Huang L, Crainiceanu CM: Smooth scalar-on-image regression via spatial Bayesian variable selection. J Comp Graph Stat 23(1):46-64, 2014.

Bai J, He B, Shou H, Zipunnikov V, Glass TA, Crainiceanu CM: Normalization and extraction of interpretable metrics from raw accelerometry data. Biostatistics 15(1):102-16, 2014.

Choi L, Crainiceanu CM, Caffo BS: Practical recommendations for population PK studies with sampling time errors. Eur J Clin Pharmacol 69(12):2055-64, 2013.

Shou H, Eloyan A, Lee S, Zipunnikov V, Crainiceanu AN, Nebel MB, Caffo B, Lindquist MA, Crainiceanu CM: Quantifying the reliability of image replication studies: The image intraclass correlation coefficient (I2C2). Cogn Affect Behav Neurosci 13(4):714-724, 2013.

Gribble MO, Crainiceanu CM, Howard BV, Umans JG, Francesconi KA, Goessler W, Zhang Y, Silbergeld EK, Guallar E, Navas-Acien A: Body composition and arsenic metabolism: a cross-sectional analysis in the Strong Heart Study. Environ Health 12(1):107, 2013.

Woodard DB, Crainiceanu C, Ruppert D: Hierarchical adaptive regression kernels for regression with functional predictors. J Comp Graph Stat 22(4):777-800, 2013.

Greven S, Crainiceanu C: On likelihood ratio testing for penalized splines. AStA Advances in Statistical Analysis 97(4):387-402, 2013.

Jones BC, Nair G, Shea CD, Crainiceanu CM, Cortese ICM, Reich DS: Quantification of multiple-sclerosis-related brain atrophy in two heterogeneous MRI datasets using mixed-effects modeling. NeuroImage: Clinical 3:171-179, 2013.

Huang L, Goldsmith J, Reiss PT, Reich DS, Crainiceanu CM: Bayesian scalar-on-image regression with application to association between intracranial DTI and cognitive outcomes. Neuroimage 83C:210-223, 2013.

Altman NS, Balco G, Crainiceanu C, Gehrels WR, Qiu J, Staudenmayer J, Sullivan P: Statistical modeling of changes in relative sea level in Maine during the Holocene Era. Environmetrics 24(5):298-305, 2013.

Lindquist MA, Caffo B, Crainiceanu C: Ironing out the statistical wrinkles in "ten ironic rules." Neuroimage 81:499-502, 2013.

Leigh R, Oishi K, Hsu J, Lindquist M, Gottesman RF, Jarso S, Crainiceanu C, Mori S, Hillis AE: Acute lesions that impair affective empathy. Brain 136(Pt 8):2539-49, 2013.

Langrock R, Swihart BJ, Caffo BS, Punjabi NM, Crainiceanu CM: Combining hidden Markov models for comparing the dynamics of multiple sleep electroencephalograms. Stat Med 32(19):3342-56, 2013.

Gertheiss J, Goldsmith J, Crainiceanu C, Greven S: Longitudinal scalar-on-functions regression with application to tractography data. Biostatistics 14(3):447-61, 2013.

Eloyan A, Crainiceanu CM, Caffo BS: Likelihood-based population independent component analysis. Biostatistics 14(3):514-27, 2013.

Goldsmith J, Greven S, Crainiceanu C: Corrected confidence bands for functional data using principal components. Biometrics 69(1):41-51, 2013.

Sotirchos ES, Saidha S, Byraiah G, Mealy MA, Ibrahim MA, Sepah YJ, Newsome SD, Ratchford JN, Frohman EM, Balcer LJ, Crainiceanu CM, Nguyen QD, Levy M, Calabresi PA: In vivo identification of morphologic retinal abnormalities in neuromyelitis optica. Neurology 80(15):1406-1414, 2013.

Sweeney EM, Shinohara RT, Shiee N, Mateen FJ, Chudgar AA, Cuzzocreo JL, Calabresi PA, Pham DL, Reich DS, Crainiceanu CM: OASIS is Automated Statistical Inference for Segmentation, with applications to multiple sclerosis lesion segmentation in MRI. Neuroimage: Clinical 2(1):402-413, 2013.

Lauzon CB, Crainiceanu C, Caffo BC, Landman BA: Assessment of bias in experimentally measured diffusion tensor imaging parameters using SIMEX. Magn Reson Med 69(3):891-902, 2013.

Sweeney EM, Shinohara RT, Shea CD, Reich DS, Crainiceanu CM: Automatic lesion incidence estimation and detection in multiple sclerosis using multisequence longitudinal MRI. AJNR Am J Neuroradiol 34(1):68-73, 2013.

Saidha S, Sotirchos ES, Oh J, Syc SB, Seigo MA, Shiee N, Eckstein C, Durbin MK, Oakley JD, Meyer SA, Frohman TC, Newsome S, Ratchford JN, Balcer LJ, Pham DL, Crainiceanu CM, Frohman EM, Reich DS, Calabresi PA: Relationships between retinal axonal and neuronal measures and global central nervous system pathology in multiple sclerosis. JAMA Neurol 70(1):34-43, 2013.

Crainiceanu CM, Staicu AM, Ray S, Punjabi N: Bootstrap-based inference on the difference in the means of two correlated functional processes. Stat Med 31(26):3223-40, 2012.

Bai J, Goldsmith J, Caffo B, Glass TA, Crainiceanu CM: Movelets: a dictionary of movement. Electron J Stat 6:559-578, 2012.

Aurora RN, Crainiceanu C, Caffo B, Punjabi NM: Sleep-disordered breathing and caffeine consumption: results of a community-based study. Chest 142(3):631-8, 2012.

Gribble MO, Howard BV, Umans JG, Shara NM, Francesconi KA, Goessler W, Crainiceanu CM, Silbergeld EK, Guallar E, Navas-Acien A: Arsenic exposure, diabetes prevalence, and diabetes control in the strong heart study. Am J Epidemiol 176(10):865-74, 2012.

Shinohara RT, Goldsmith J, Mateen FJ, Crainiceanu C, Reich DS: Predicting breakdown of the blood-brain barrier in multiple sclerosis without contrast agents. AJNR Am J Neuroradiol 33(8):1586-90, 2012.

Saidha S, Sotirchos ES, Ibrahim MA, Crainiceanu CM, Gelfand JM, Sepah YJ, Ratchford JN, Oh J, Seigo MA, Newsome SD, Balcer LJ, Frohman EM, Green AJ, Nguyen QD, Calabresi PA: Microcystic macular oedema, thickness of the inner nuclear layer of the retina, and disease characteristics in multiple sclerosis: a retrospective study. Lancet Neurol 11(11):963-72, 2012.

De Beuf K, Pipelers P, Andriankaja M, Thas O, Inze D, Crainiceanu C, Clement L: Analysis of tiling array expression studies with flexible designs in Bioconductor (waveTiling). BMC Bioinformatics 13(1):234, 2012.

Staicu AM, Crainiceanu CM, Reich DS, Ruppert D: Modeling functional data with spatially heterogeneous shape characteristics. Biometrics 68(2):331-343, 2012.

Tellez-Plaza M, Navas-Acien A, Menke A, Crainiceanu CM, Pastor-Barriuso R, Guallar E: Cadmium exposure and all-cause and cardiovascular mortality in the US general population. Environmental Health Perspectives 120(7):1017-22, 2012.

Swihart BJ, Caffo BS, Crainiceanu CM, Punjabi NM: Mixed effect Poisson log-linear models for clinical and epidemiological sleep hypnogram data. Statistics in Medicine 31(9):855-70, 2012.

Yang X, Lauzon CB, Crainiceanu C, Caffo B, Resnick SM, Landman BA: Biological parametric mapping accounting for random regressors with regression calibration and model II regression. Neuroimage 62(3):1761-1768, 2012.

Paynter NP, Crainiceanu CM, Sharrett AR, Chambless LE, Coresh J: Effect of correcting for long-term variation in major coronary heart disease risk factors: relative hazard estimation and risk prediction in the Atherosclerosis Risk in Communities Study. Annals of Epidemiology 22(3):191-7, 2012.

Syc SB, Saidha S, Newsome SD, Ratchford JN, Levy M, Ford E, Crainiceanu CM, Durbin MK, Oakley JD, Meyer SA, Frohman EM, Calabresi PA: Optical coherence tomography segmentation reveals ganglion cell layer pathology after optic neuritis. Brain 135(Pt 2):521-33, 2012.

Clement L, De Beuf K, Thas O, Vuylsteke M, Irizarry RA, Crainiceanu CM: Fast wavelet based functional models for transcriptome analysis with tiling arrays. Statistical Applications in Genetics and Molecular Biology 11(1):1-36, 2012.

Goldsmith J, Crainiceanu CM, Caffo B, Reich D: Longitudinal penalized functional regression for cognitive outcomes on neuronal tract measurements. Applied Statistics 61(3):453-469, 2012.

Zipunnikov V, Caffo B, Yousem DM, Davatzikos C, Schwartz BS, Crainiceanu C: Multilevel functional principal component analysis for high-dimensional data. Journal of Computational and Graphical Statistics 20(4):852-873, 2011.

Goldsmith J, Bobb J, Crainiceanu CM, Caffo B, Reich D: Penalized functional regression. Journal of Computational and Graphical Statistics 20(4):830-851, 2011.

Aurora RN, Caffo B, Crainiceanu C, Punjabi NM: Correlating subjective and objective sleepiness: revisiting the association using survival analysis. Sleep 34(12):1707-14, 2011.

Crainiceanu CM, Caffo BS, Luo S, Zipunnikov V, Punjabi NM: Population value decomposition, a framework for the analysis of image populations. Journal of the American Statistical Association 106(495): 775-790, 2011.

Korzeniewska A, Franaszczuk PJ, Crainiceanu CM, Kus R, Crone NE: Dynamics of large-scale cortical interactions at high gamma frequencies during word production: event related causality (ERC) analysis of human electrocorticography (ECoG). Neuroimage 56(4):2218-37, 2011.

Lauzon CB, Asman AJ, Crainiceanu C, Caffo BC, Landman BA: Assessment of bias for MRI diffusion tensor imaging using SIMEX. Medical Image Computing and Computer-Assisted Intervention 14(Pt 2):107-15, 2011.

Goldsmith, Wand MP, Crainiceanu C: Functional regression via variational Bayes. Electronic J Statistics 5: 572–602, 2011.

Zipunnikov V, Caffo B, Yousem DM, Davatzikos C, Schwartz BS, Crainiceanu C: Functional principal component model for high-dimensional brain imaging. Neuroimage 58(3):772-84, 2011.

Shinohara RT, Crainiceanu CM, Caffo BS, Gaitan MI, Reich DS: Population-wide principal component-based quantification of blood-brain-barrier dynamics in multiple sclerosis. Neuroimage 57(4):1430-46, 2011.

Goldsmith J, Crainiceanu CM, Caffo BS, Reich DS: Penalized functional regression analysis of white-matter tract profiles in multiple sclerosis. Neuroimage 57(2):431-9, 2011.

Warner CV, Syc SB, Stankiewicz AM, Hiremath G, Farrell SK, Crainiceanu CM, Conger A, Frohman TC, Bisker ER, Balcer LJ, Frohman EM, Calabresi PA, Saidha S: The impact of utilizing different optical coherence tomography devices for clinical purposes and in multiple sclerosis trials. PLoS One 6(8):e22947, 2011.

Goldsmith J, Caffo B, Crainiceanu C, Reich D, Du Y, Hendrix C: Nonlinear tube-fitting for the analysis of anatomical and functional structures. Annals of Applied Statistics 5(1):337-363, 2011.

Tellez-Plaza M, Navas-Acien A, Crainiceanu CM, Sharrett AR, Guallar E: Cadmium and peripheral arterial disease: gender differences in the 1999-2004 US National Health and Nutrition Examination Survey. American Journal of Epidemiology 172(6):671-81, 2010.

Caffo BS, Crainiceanu CM, Verduzco G, Joel S, Mostofsky SH, Bassett SS, Pekar JJ: Two-stage decompositions for the analysis of functional connectivity for fMRI with application to Alzheimer's disease risk. Neuroimage 51(3):1140-9, 2010.

Staicu AM, Crainiceanu CM, Carroll RJ: Fast methods for spatially correlated multilevel functional data. Biostatistics 11(2):177-94, 2010.

Crainiceanu CM, Staicu AM, Di CZ: Generalized multilevel functional regression. Journal of the American Statistical Association 104(488):1550-1561, 2009.

Gardner RM, Nyland JF, Evans SL, Wang SB, Doyle KM, Crainiceanu CM, Silbergeld EK: Mercury induces an unopposed inflammatory response in human peripheral blood mononuclear cells in vitro. Environmental Health Perspectives 117(12):1932-8, 2009.

Caffo B, Swihart B, Laffan A, Crainiceanu C, Punjabi N: An overview of observational sleep research with application to sleep stage transitioning. Chance 22(1):10-15, 2009.

Crainiceanu CM, Caffo BS, Di CZ, Punjabi NM: Nonparametric signal extraction and measurement error in the analysis of electroencephalographic activity during sleep. Journal of the American Statistical Association 104(486):541-555, 2009.

Luo S, Crainiceanu CM, Louis TA, Chatterjee N: Bayesian inference for smoking cessation with a latent cure state. Biometrics 65(3):970-8, 2009.

Cheng YJ, Crainiceanu CM: Cox models with smooth functional effect of covariates measured with error. Journal of the American Statistical Association 104(487):1144-1154, 2009.

Navas-Acien A, Umans JG, Howard BV, Goessler W, Francesconi KA, Crainiceanu CM, Silbergeld EK, Guallar E: Urine arsenic concentrations and species excretion patterns in American Indian communities over a 10-year period: the Strong Heart Study. Environmental Health Perspectives 117(9):1428-33, 2009.

Di C, Crainiceanu CM, Caffo BS, Punjabi NM: Multilevel functional principal component analysis. Annals of Applied Statistics 3(1): 458-488, 2009.

 

 

Frank Curriero Description: C:\Users\margo\my_doc\My Web Sites\Publication\UP_AR~11.gif(go to top of document)

Tobin KE, Latkin CA, Curriero FC: An examination of places where African American men who have sex with men (MSM) use drugs/drink alcohol: A focus on social and spatial characteristics. Int J Drug Policy 25(3):591-7, 2014.

Soneja S, Chen C, Tielsch JM, Katz J, Zeger SL, Checkley W, Curriero FC, Breysse PN: Humidity and gravimetric equivalency adjustments for nephelometer-based particulate matter measurements of emissions from solid biomass fuel use in cookstoves. Int J Environ Res Public Health 11(6):6400-16, 2014.

Ahmad CS, Dick RW, Snell E, Kenney ND, Curriero FC, Pollack K, Albright JP, Mandelbaum BR: Major and minor league baseball hamstring injuries: epidemiologic findings from the Major League Baseball Injury Surveillance System. Am J Sports Med 42(6):1464-1470, 2014.

Casey JA, Shopsin B, Cosgrove SE, Nachman KE, Curriero FC, Rose HR, Schwartz BS: High-density livestock production and molecularly characterized MRSA infections in Pennsylvania. Environ Health Perspect 122(5):464-70, 2014.

Hsieh S, Klassen AC, Curriero FC, Caulfield LE, Cheskin LJ, Davis JN, Goran MI, Weigensberg MJ, Spruijt-Metz D: Fast-food restaurants, park access, and insulin resistance among Hispanic youth. Am J Prev Med 46(4):378-87, 2014.

Jennings JM, Milam AJ, Greiner A, Furr-Holden CD, Curriero FC, Thornton RJ: Neighborhood alcohol outlets and the association with violent crime in one Mid-Atlantic city: the implications for zoning policy. J Urban Health 91(1):62-71, 2014.

Casey JA, Curriero FC, Cosgrove SE, Nachman KE, Schwartz BS: High-density livestock operations, crop field application of manure, and risk of community-associated methicillin-resistant Staphylococcus aureus infection in Pennsylvania. JAMA Intern Med 173(21):1980-90, 2013.

Curriero FC, Pinchoff J, van Landingham SW, Ferrucci L, Friedman DS, Ramulu PY: Alteration of travel patterns with vision loss from glaucoma and macular degeneration. JAMA Ophthalmol 131(11):1420-6, 2013.

Rossen LM, Curriero FC, Cooley-Strickland M, Pollack KM: Food availability en route to school and anthropometric change in urban children. J Urban Health 90(4):653-66, 2013.

Webster DW, Whitehill JM, Vernick JS, Curriero FC: Effects of Baltimore's Safe Streets Program on gun violence: a replication of Chicago's CeaseFire Program. J Urban Health 90(1):27-40, 2013.

Jennings JM, Woods SE, Curriero FC: The spatial and temporal association of neighborhood drug markets and rates of sexually transmitted infections in an urban setting. Health Place 23C:128-137, 2013.

Liu AY, Curriero FC, Glass TA, Stewart WF, Schwartz BS: The contextual influence of coal abandoned mine lands in communities and type 2 diabetes in Pennsylvania. Health Place 22C:115-122, 2013.

Curriero FC, James NT, Shields TM, Gouvis Roman C, Furr-Holden C DM, Cooley-Strickland M, Pollack KM: Exploring walking path quality as a factor for urban elementary school children's active transport to school. J Phys Act Health 10(3):323-34, 2013.

Feingold BJ, Silbergeld EK, Curriero FC, van Cleef BA, Heck ME, Kluytmans JA: Livestock density as risk factor for livestock-associated methicillin-resistant Staphylococcus aureus, the Netherlands. Emerg Infect Dis 18(11):1841-9, 2012.

Berman JD, Fann N, Hollingsworth JW, Pinkerton KE, Rom WN, Szema AM, Breysse PN, White RH, Curriero FC: Health benefits from large-scale ozone reduction in the United States. Environ Health Perspect 120(10):1404-10, 2012.

Rossen LM, Pollack KM, Curriero FC: Verification of retail food outlet location data from a local health department using ground-truthing and remote-sensing technology: Assessing differences by neighborhood characteristics. Health & Place 18(5):956-62, 2012.

Young GS, Fox MA, Trush M, Kanarek N, Glass TA, Curriero FC: Differential exposure to hazardous air pollution in the United States: a multilevel analysis of urbanization and neighborhood socioeconomic deprivation. International Journal of Environmental Research and Public Health 9(6):2204-25, 2012.

Salje H, Lessler J, Endy TP, Curriero FC, Gibbons RV, Nisalak A, Nimmannitya S, Kalayanarooj S, Jarman RG, Thomas SJ, Burke DS, Cummings DA: Revealing the microscale spatial signature of dengue transmission and immunity in an urban population. Proceedings of the National Academy of Sciences 109(24):9535-8, 2012.

Choi M, Curriero FC, Johantgen M, Mills ME, Sattler B, Lipscomb J: Association between ozone and emergency department visits: an ecological study. International Journal of Environmental Health Research 21(3):201-21, 2011.

Rossen LM, Pollack KM, Curriero FC, Shields TM, Smart MJ, Furr-Holden C DM, Cooley-Strickland M: Neighborhood incivilities, perceived neighborhood safety, and walking to school among urban-dwelling children. Journal of Physical Activity & Health 8(2):262-71, 2011.

DeLisle S, South B, Anthony JA, Kalp E, Gundlapallli A, Curriero FC, Glass GE, Samore M, Perl TM: Combining free text and structured electronic medical record entries to detect acute respiratory infections. PLoS One 5(10):e13377, 2010.

Feng J, Glass TA, Curriero FC, Stewart WF, Schwartz BS: The built environment and obesity: a systematic review of the epidemiologic evidence. Health and Place 16(2):175-90, 2010.

Fox M, Curriero F, Kulbicki K, Resnick B, Burke T: Evaluating the community health legacy of WWI chemical weapons testing. Journal of Community Health 35(1):93-103, 2010.

Curriero FC, Kulldorff M, Boscoe FP, Klassen AC: Using imputation to provide location information for nongeocoded addresses. PLoS One 5(2):e8998, 2010.

Torio CM, Klassen AC, Curriero FC, Caballero B, Helzlsouer K: The modifying effect of social class on the relationship between body mass index and breast cancer incidence. American Journal of Public Health 100(1):146-51, 2010.

Uscher-Pines L, Vernick JS, Curriero F, Lieberman R, Burke TA: Disaster-related injuries in the period of recovery: the effect of prolonged displacement on risk of injury in older adults. Journal of Trauma 67(4):834-40, 2009.

Lowther SA, Curriero FC, Kalish BT, Shields TM, Monze M, Moss WJ: Population immunity to measles virus and the effect of HIV-1 infection after a mass measles vaccination campaign in Lusaka, Zambia: a cross-sectional survey. Lancet 373(9668):1025-32, 2009.

Lowther SA, Curriero FC, Shields T, Ahmed S, Monze M, Moss WJ: Feasibility of satellite image-based sampling for a health survey among urban townships of Lusaka, Zambia. Tropical Medicine and International Health 14(1):70-8, 2009.

 

 

Marie Diener-West   Description: C:\Users\margo\my_doc\My Web Sites\Publication\UP_AR~11.gif(go to top of document)

Repka MX, Kraker RT, Holmes JM, Summers AI, Glaser SR, Barnhardt CN, Tien DR, Pediatric Eye Disease Investigator Group (includes Diener-West M): Atropine vs patching for treatment of moderate amblyopia: follow-up at 15 years of age of a randomized clinical trial. JAMA Ophthalmol 132(7):799-805, 2014.

Haywood C Jr, Bediako S, Lanzkron S, Diener-West M, Strouse J, Haythornthwaite J, Onojobi G, Beach MC, IMPORT Investigators: An unequal burden: poor patient-provider communication and sickle cell disease. Patient Educ Couns 96(2):159-64, 2014.

Hunt EA, Duval-Arnould JM, Nelson-McMillan KL, Bradshaw JH, Diener-West M, Perretta JS, Shilkofski NA: Pediatric resident resuscitation skills improve after "Rapid Cycle Deliberate Practice" training. Resuscitation 85(7):945-951, 2014.

Haywood C Jr, Lanzkron S, Diener-West M, Haythornthwaite J, Strouse JJ, Bediako S, Onojobi G, Beach MC, for the IMPORT Investigators: Attitudes toward clinical trials among patients with sickle cell disease. Clin Trials 11(3):275-283, 2014.

Miller AM, Chandler DL, Repka MX, Hoover DL, Lee KA, Melia M, Rychwalski PJ, Silbert DI, Pediatric Eye Disease Investigator Group (includes Diener-West M), Beck RW, Crouch ER 3rd, Donahue S, Holmes JM, Quinn GE, Sala NA, Schloff S, Wallace DK, Foster NC, Frick KD, Golden RP, Lambert SR, Tien DR, Weakley DR Jr: Office probing for treatment of nasolacrimal duct obstruction in infants. J AAPOS 18(1):26-30, 2014.

Dember LM, Imrey PB, Beck GJ, Cheung AK, Himmelfarb J, Huber TS, Kusek JW, Roy-Chaudhury P, Vazquez MA, Alpers CE, Robbin ML, Vita JA, Greene T, Gassman JJ, Feldman HI, Hemodialysis Fistula Maturation Study Group (includes Diener-West M): Objectives and design of the hemodialysis fistula maturation study. Am J Kidney Dis 63(1):104-12, 2014.

Park SH, Milstone AM, Diener-West M, Nussenblatt V, Cosgrove SE, Tamma PD: Short versus prolonged courses of antibiotic therapy for children with uncomplicated Gram-negative bacteraemia. J Antimicrob Chemother 69(3):779-85, 2014.

Pursnani S, Diener-West M, Sharrett AR: The effect of aging on the association between coronary heart disease risk factors and carotid intima media thickness: An analysis of the Atherosclerosis Risk in Communities (ARIC) cohort. Atherosclerosis 233(2):441-446, 2014.

Venugopal V, Lehmann CU, Diener-West M, Agwu AL: Longitudinal evaluation of a World Wide Web-based antimicrobial stewardship program: Assessing factors associated with approval patterns and trends over time. Am J Infect Control 42(2):100-5, 2014.

Bade A, Boas M, Gallaway M, Mitchell GL, Scheiman M, Kulp MT, Cotter SA, Rouse M, CITT Study Group (includes Diener-West M): Relationship between clinical signs and symptoms of convergence insufficiency. Optom Vis Sci 90(9):988-95, 2013.

McLaine P, Navas-Acien A, Lee R, Simon P, Diener-West M, Agnew J: Elevated blood lead levels and reading readiness at the start of kindergarten. Pediatrics 131(6):1081-9, 2013.

Oh J, Zackowski K, Chen M, Newsome S, Saidha S, Smith SA, Diener-West M, Prince J, Jones CK, Van Zijl PC, Calabresi PA, Reich DS: Multiparametric MRI correlates of sensorimotor function in the spinal cord in multiple sclerosis. Mult Scler 19(4):427-35, 2013.

Morgan TC, Dawson J, Spengler D, Lees KR, Aldrich C, Mishra NK, Lane K, Quinn TJ, Diener-West M, Weir CJ, Higgins P, Rafferty M, Kinsley K, Ziai W, Awad I, Walters MR, Hanley D, CLEAR and VISTA Investigators: The Modified Graeb Score: an enhanced tool for intraventricular hemorrhage measurement and prediction of functional outcome. Stroke 44(3):635-41, 2013.

Mehtsun WT, Ibrahim AM, Diener-West M, Pronovost PJ, Makary MA: Surgical never events in the United States. Surgery 153(4):465-72, 2013.

Bittner AK, Haythornthwaite JA, Diener-West M, Dagnelie G: Worse-than-usual visual fields measured in retinitis pigmentosa related to episodically decreased general health. Br J Ophthalmol 97(2):145-8, 2013.

Oh J, Saidha S, Chen M, Smith SA, Prince J, Jones C, Diener-West M, van Zijl PC, Reich DS, Calabresi PA: Spinal cord quantitative MRI discriminates between disability levels in multiple sclerosis. Neurology 80(6):540-547, 2013.

Barnhardt C, Cotter SA, Mitchell GL, Scheiman M, Kulp MT, CITT Study Group (includes Diener-West M): Symptoms in children with convergence insufficiency: before and after treatment. Optom Vis Sci 89(10):1512-20, 2012.

Parmalee NL, Schubert C, Figueroa M, Bird AC, Peto T, Gillies MC, Bernstein PS, Kiryluk K, Terwilliger JD, Allikmets R, MacTel Project (includes Diener-West M): Identification of a potential susceptibility locus for macular telangiectasia type 2. PLoS One 7(8):e24268, 2012.

Schaeffer AJ, Yenokyan G, Alcorn K, Furth SL, Diener-West M, Wu AW, Gearhart JP, Dodson JL: Health related quality of life in adolescents with bladder exstrophy-epispadias as measured by the child health questionnaire-child form 87. J Urol 188(5):1924-9, 2012.

Claassen CW, Diener-West M, Mehta SH, Thomas DL, Kirk GD: Discordance between CD4+ T-lymphocyte counts and percentages in HIV-infected persons with liver fibrosis. Clinical Infectious Diseases 54(12):1806-13, 2012.

Allon M, Zhang L, Maya ID, Bray MS, Fernandez JR, Dialysis Access Consortium (DAC) Study Investigators (includes Diener-West M): Association of factor V gene polymorphism with arteriovenous graft failure. American Journal of Kidney Diseases 59(5):682-8, 2012.

Bittner AK, Haythornthwaite JA, Diener-West M, Dagnelie G: Photopsias are related in part to perceived stress and positive mood in retinitis pigmentosa. Eye 26(1):101-8, 2012.

Borsting E, Mitchell GL, Kulp MT, Scheiman M, Amster DM, Cotter S, Coulter RA, Fecho G, Gallaway MF, Granet D, Hertle R, Rodena J, Yamada T, CITT Study Group (includes Diener-West M): Improvement in academic behaviors after successful treatment of convergence insufficiency. Optometry and Vision Science 89(1):12-8, 2012.

Bittner AK, Ibrahim MA, Haythornthwaite JA, Diener-West M, Dagnelie G: Vision test variability in retinitis pigmentosa and psychosocial factors. Optometry and Vision Science 88(12):1496-506, 2011.

Scheiman M, Cotter S, Kulp MT, Mitchell GL, Cooper J, Gallaway M, Hopkins KB, Bartuccio M, Chung I, Convergence Insufficiency Treatment Trial Study Group (includes Diener-West M): Treatment of accommodative dysfunction in children: results from a randomized clinical trial. Optometry and Vision Science 88(11):1343-52, 2011.

Bittner AK, Diener-West M, Dagnelie G: Characteristics and possible visual consequences of photopsias as vision measures are reduced in retinitis pigmentosa. Investigative Ophthalmology and Visual Science 52(9):6370-6, 2011.

Pediatric Eye Disease Investigator Group (PEDIG) Writing Committee (includes Diener-West M), Wallace DK, Kraker RT, Beck RW, Cotter SA, Davis PL, Holmes JM, Repka MX, Suh DW: Randomized trial to evaluate combined patching and atropine for residual amblyopia. Archives of Ophthalmology 129(7):960-2, 2011.

Correction of Myopia Evaluation Trial 2 Study Group for the Pediatric Eye Disease Investigator Group (includes Diener-West M): Progressive-addition lenses versus single-vision lenses for slowing progression of myopia in children with high accommodative lag and near esophoria. Investigative Ophthalmology and Visual Science 52(5):2749-57, 2011.

Dixon BS, Beck GJ, Dember LM, Vazquez MA, Greenberg A, Delmez JA, Allon M, Himmelfarb J, Hu B, Greene T, Radeva MK, Davidson IJ, Ikizler TA, Braden GL, Lawson JH, Cotton JR Jr, Kusek JW, Feldman HI, Dialysis Access Consortium (DAC) Study Group (includes Diener-West M): Use of aspirin associates with longer primary patency of hemodialysis grafts. Journal of the American Society of Nephrology 22(4):773-81, 2011.

Chen AE, Carroll KC, Diener-West M, Ross T, Ordun J, Goldstein MA, Kulkarni G, Cantey JB, Siberry GK: Randomized controlled trial of cephalexin versus clindamycin for uncomplicated pediatric skin infections. Pediatrics 127(3):e573-80, 2011.

Ybarra ML, Mitchell KJ, Hamburger M, Diener-West M, Leaf PJ: X-rated material and perpetration of sexually aggressive behavior among children and adolescents: is there a link? Aggressive Behavior 37(1):1-18, 2011.

Bembea MM, Nadkarni VM, Diener-West M, Venugopal V, Carey SM, Berg RA, Hunt EA, American Heart Association National Registry of Cardiopulmonary Resuscitation Investigators: Temperature patterns in the early postresuscitation period after pediatric inhospital cardiac arrest. Pediatric Critical Care Medicine 11(6):723-30, 2010.

Caffo B, Diener-West M, Punjabi NM, Samet J: A novel approach to prediction of mild obstructive sleep disordered breathing in a population-based sample: the Sleep Heart Health Study. Sleep 33(12):1641-8, 2010.

Scheiman M, Kulp MT, Cotter S, Mitchell GL, Gallaway M, Boas M, Coulter R, Hopkins K, Tamkins S, Convergence Insufficiency Treatment Trial Study Group (includes Diener-West M): Vision therapy/orthoptics for symptomatic convergence insufficiency in children: treatment kinetics. Optometry and Vision Science 87(8):593-603, 2010.

Sangweme DT, Midzi N, Zinyowera-Mutapuri S, Mduluza T, Diener-West M, Kumar N: Impact of schistosome infection on plasmodium falciparum malariometric indices and immune correlates in school age children in Burma Valley, Zimbabwe. PLoS Neglected Tropical Diseases 4(11):e882, 2010.

Dodson JL, Furth SL, Yenokyan G, Alcorn K, Diener-West M, Wu AW, Gearhart JP: Parent perspectives of health related quality of life for adolescents with bladder exstrophy-epispadias as measured by the child health questionnaire-parent form 50. Journal of Urology 184(4 Suppl):1656-61, 2010.

Repka MX, Kraker RT, Beck RW, Atkinson CS, Bacal DA, Bremer DL, Davis PL, Gearinger MD, Glaser SR, Hoover DL, Laby DM, Morrison DG, Rogers DL, Sala NA, Suh DW, Wheeler MB, Pediatric Eye Disease Investigator Group (includes Diener-West M): Pilot study of levodopa dose as treatment for residual amblyopia in children aged 8 years to younger than 18 years. Archives of Ophthalmology 128(9):1215-7, 2010.

Scheiman M, Kulp MT, Cotter S, Mitchell GL, Gallaway M, Boas M, Coulter R, Hopkins K, Tamkins S, Convergence Insufficiency Treatment Trial Study Group (includes Diener-West M): Vision therapy/orthoptics for symptomatic convergence insufficiency in children: treatment kinetics. Optometry and Vision Science 87(8):593-603, 2010.

Gottlieb DJ, Yenokyan G, Newman AB, O'Connor GT, Punjabi NM, Quan SF, Redline S, Resnick HE, Tong EK, Diener-West M, Shahar E: Prospective study of obstructive sleep apnea and incident coronary heart disease and heart failure: the sleep heart health study. Circulation 122(4):352-60, 2010.

Redline S, Yenokyan G, Gottlieb DJ, Shahar E, O'Connor GT, Resnick HE, Diener-West M, Sanders MH, Wolf PA, Geraghty EM, Ali T, Lebowitz M, Punjabi NM: Obstructive sleep apnea-hypopnea and incident stroke: the sleep heart health study. American Journal of Respiratory and Critical Care Medicine 182(2):269-77, 2010.

Sengupta A, Lehmann C, Diener-West M, Perl TM, Milstone AM: Catheter duration and risk of CLA-BSI in neonates with PICCs. Pediatrics 125(4):648-53, 2010.

Convergence Insufficiency Treatment Trial Study Group (includes Diener-West M): Long-term effectiveness of treatments for symptomatic convergence insufficiency in children. Optometry and Vision Science 86(9):1096-103, 2009.

Bittner AK, Diener-West M, Dagnelie G: A survey of photopsias in self-reported retinitis pigmentosa: location of photopsias is related to disease severity. Retina 29(10):1513-21, 2009.

Ybarra ML, Langhinrichsen-Rohling J, Friend J, Diener-West M: Impact of asking sensitive questions about violence to children and adolescents. Journal of Adolescent Health 45(5):499-507, 2009.

Merlo CA, Weiss ES, Orens JB, Borja MC, Diener-West M, Conte JV, Shah AS: Impact of U.S. Lung Allocation Score on survival after lung transplantation. Journal of Heart and Lung Transplantation 28(8):769-75, 2009.

Dixon BS, Beck GJ, Vazquez MA, Greenberg A, Delmez JA, Allon M, Dember LM, Himmelfarb J, Gassman JJ, Greene T, Radeva MK, Davidson IJ, Ikizler TA, Braden GL, Fenves AZ, Kaufman JS, Cotton JR Jr, Martin KJ, McNeil JW, Rahman A, Lawson JH, Whiting JF, Hu B, Meyers CM, Kusek JW, Feldman HI, DAC Study Group (includes Diener-West M): Effect of dipyridamole plus aspirin on hemodialysis graft patency. New England Journal of Medicine 360(21):2191-201, 2009.

Repka MX, Chandler DL, Holmes JM, Hoover DL, Morse CL, Schloff S, Silbert DI, Tien DR, Pediatric Eye Disease Investigator Group (includes Diener-West M): Balloon catheter dilation and nasolacrimal duct intubation for treatment of nasolacrimal duct obstruction after failed probing. Archives of Ophthalmology 127(5):633-9, 2009.

Hunt EA, Vera K, Diener-West M, Haggerty JA, Nelson KL, Shaffner DH, Pronovost PJ: Delays and errors in cardiopulmonary resuscitation and defibrillation by pediatric residents during simulated cardiopulmonary arrests. Resuscitation 80(7):819-25, 2009.

Rouse M, Borsting E, Mitchell GL, Cotter SA, Kulp M, Scheiman M, Barnhardt C, Bade A, Yamada T, Convergence Insufficiency Treatment Trial (CITT) Investigator Group (includes Diener-West M): Validity of the convergence insufficiency symptom survey: a confirmatory study. Optometry and Vision Science 86(4):357-63, 2009.

Amarasingham R, Plantinga L, Diener-West M, Gaskin DJ, Powe NR: Clinical information technologies and inpatient outcomes: a multiple hospital study. Archives of Internal Medicine 169(2):108-14, 2009.

Pediatric Eye Disease Investigator Group (includes Diener-West M): Interobserver reliability of the prism and alternate cover test in children with esotropia. Archives of Ophthalmology 127(1):59-65, 2009.

 

 

Ani Eloyan  Description: C:\Users\margo\my_doc\My Web Sites\Publication\UP_AR~11.gif(go to top of document)

Nebel MB, Eloyan A, Barber AD, Mostofsky SH: Precentral gyrus functional connectivity signatures of autism. Front Syst Neurosci 8:80, 2014.

Risk BB, Matteson DS, Ruppert D, Eloyan A, Caffo BS: An evaluation of independent component analyses with an application to resting-state fMRI. Biometrics 70(1):224-36, 2014.

Eloyan A, Li S, Muschelli J, Pekar JJ, Mostofsky SH, Caffo BS: Analytic programming with FMRI data: a quick-start guide for statisticians using R. PLoS One 9(2):e89470, 2014.

Shou H, Eloyan A, Lee S, Zipunnikov V, Crainiceanu AN, Nebel MB, Caffo B, Lindquist MA, Crainiceanu CM: Quantifying the reliability of image replication studies: The image intraclass correlation coefficient (I2C2). Cogn Affect Behav Neurosci 13(4):714-724, 2013.

Cervenka MC, Corines J, Boatman-Reich DF, Eloyan A, Sheng X, Franaszczuk PJ, Crone NE: Electrocorticographic functional mapping identifies human cortex critical for auditory and visual naming. Neuroimage 69:267-76, 2013.

Eloyan A, Crainiceanu CM, Caffo BS: Likelihood-based population independent component analysis. Biostatistics 14(3):514-27, 2013.

Eloyan A, Ghosh SK: A semiparametric approach to source separation using independent component analysis. Comput Stat Data Anal 58:383-396, 2013.

Li S, Eloyan A, Joel S, Mostofsky S, Pekar J, Bassett SS, Caffo B: Analysis of group ICA-based connectivity measures from fMRI: application to Alzheimer's disease. PLoS One 7(11):e49340, 2012.

Eloyan A, Muschelli J, Nebel MB, Liu H, Han F, Zhao T, Barber AD, Joel S, Pekar JJ, Mostofsky SH, Caffo B: Automated diagnoses of attention deficit hyperactive disorder using magnetic resonance imaging. Frontiers in Systems Neuroscience 6:61, 2012.

Eloyan A, Ghosh SK: Smooth density estimation with moment constraints using mixture distributions. J Nonparametr Stat 23 (2):513-531, 2011.

 

 

Constantine Frangakis    Description: C:\Users\margo\my_doc\My Web Sites\Publication\UP_AR~11.gif(go to top of document)

Duran R, Chapiro J, Frangakis C, Lin M, Schlachter TR, Schernthaner RE, Wang Z, Savic LJ, Tacher V, Kamel IR, Geschwind JF: Uveal melanoma metastatic to the liver: the role of quantitative columetric contrast-enhanced MR imaging in the assessment of early tumor response after transarterial chemoembolization. Transl Oncol 7(4):447-55, 2014.

Tsapkini K, Frangakis C, Gomez Y, Davis C, Hillis AE: Augmentation of spelling therapy with transcranial direct current stimulation in primary progressive aphasia: preliminary results and challenges. Aphasiology 28(8-9):1112-1130, 2014.

Li F, Baccini M, Mealli F, Zell ER, Frangakis CE, Rubin DB: Multiple imputation by ordered monotone blocks With application to the anthrax vaccine research program. J Comp Graph Stat 23(3):877-892, 2014.

Drye LT, Spragg D, Devanand DP, Frangakis C, Marano C, Meinert CL, Mintzer JE, Munro CA, Pelton G, Pollock BG, Porsteinsson AP, Rabins PV, Rosenberg PB, Schneider LS, Shade DM, Weintraub D, Yesavage J, Lyketsos CG, for the CitAD Research Group: Changes in QTc interval in the Citalopram for Agitation in Alzheimer's Disease (CitAD) Randomized Trial. PLoS One 9(6):e98426, 2014.

An MW, Frangakis CE, Yiannoutsos CT: Choosing profile double-sampling designs for survival estimation with application to President's Emergency Plan for AIDS Relief evaluation. Stat Med 33(12):2017-29, 2014.

Lim TW, Frangakis C, Latkin C, Ha TV, Minh NL, Zelaya C, Quan VM, Go VF: Community-level income inequality and HIV prevalence among persons who inject drugs in Thai Nguyen, Vietnam. PLoS One 9(3):e90723, 2014.

Porsteinsson AP, Drye LT, Pollock BG, Devanand DP, Frangakis C, Ismail Z, Marano C, Meinert CL, Mintzer JE, Munro CA, Pelton G, Rabins PV, Rosenberg PB, Schneider LS, Shade DM, Weintraub D, Yesavage J, Lyketsos CG, CitAD Research Group: Effect of citalopram on agitation in Alzheimer disease: the CitAD randomized clinical trial. JAMA 311(7):682-91, 2014.

Flynn Longmire CV, Drye LT, Frangakis CE, Martin BK, Meinert CL, Mintzer JE, Munro CA, Porsteinsson AP, Rabins PV, Rosenberg PB, Schneider LS, Weintraub D, Lyketsos CG, DIADS-2 Research Group: Is sertraline treatment or depression remission in depressed Alzheimer patients associated with improved caregiver well being? Depression in Alzheimer's disease study 2. Am J Geriatr Psychiatry 22(1):14-24, 2014.

Lim T, Zelaya C, Latkin C, Quan VM, Frangakis C, Ha TV, Minh NL, Go V: Individual-level socioeconomic status and community-level inequality as determinants of stigma towards persons living with HIV who inject drugs in Thai Nguyen, Vietnam. J Int AIDS Soc 16(3 Suppl 2):18637, 2013.

Go VF, Frangakis C, Le Minh N, Latkin CA, Ha TV, Mo TT, Sripaipan T, Davis W, Zelaya C, Vu PT, Chen Y, Celentano DD, Quan VM: Effects of an HIV peer prevention intervention on sexual and injecting risk behaviors among injecting drug users and their risk partners in Thai Nguyen, Vietnam: A randomized controlled trial. Soc Sci Med 96:154-64, 2013.

Shinohara RT, Narayan AK, Hong K, Kim HS, Coresh J, Streiff MB, Frangakis CE: Estimating parsimonious models of longitudinal causal effects using regressions on propensity scores. Stat Med 32(22):3829-37, 2013.

Go VF, Minh NL, Frangakis C, Ha TV, Latkin CA, Sripaipan T, Davis W, Zelaya C, Ngoc NP, Quan VM: Decreased injecting is associated with increased alcohol consumption among injecting drug users in northern Vietnam. Int J Drug Policy 24(4):304-11, 2013.

Fried LP, Carlson MC, McGill S, Seeman T, Xue QL, Frick K, Tan E, Tanner EK, Barron J, Frangakis C, Piferi R, Martinez I, Gruenewald T, Martin BK, Berry-Vaughn L, Stewart J, Dickersin K, Willging PR, Rebok GW: Experience Corps: A dual trial to promote the health of older adults and children's academic success. Contemp Clin Trials 36(1):1-13, 2013.

Bhagat N, Reyes DK, Lin M, Kamel I, Pawlik TM, Frangakis C, Geschwind JF: Phase II study of chemoembolization with drug-eluting beads in patients with hepatic neuroendocrine metastases: high incidence of biliary injury. Cardiovasc Intervent Radiol 36(2):449-59, 2013.

Li CH, Pollock BG, Lyketsos CG, Vaidya V, Drye LT, Kirshner M, Sorisio D, Bies RR; DIADS-2 Research Group (includes Frangakis C): Population pharmacokinetic modeling of sertraline treatment in patients with Alzheimer disease: the DIADS-2 study. J Clin Pharmacol 53(2):234-9, 2013.

Makris GD, Reutfors J, Osby U, Isacsson G, Frangakis C, Ekbom A, Papadopoulos FC: Suicide seasonality and antidepressants: a register-based study in Sweden. Acta Psychiatr Scand 127(2):117-125, 2013.

Munro CA, Longmire CF, Drye LT, Martin BK, Frangakis CE, Meinert CL, Mintzer JE, Porsteinsson AP, Rabins PV, Rosenberg PB, Schneider LS, Weintraub D, Lyketsos CG, Depression in Alzheimer’s Disease Study–2 Research Group: Cognitive outcomes after sertaline treatment in patients with depression of Alzheimer disease. Am J Geriatr Psychiatry 20(12):1036-44, 2012.

Momin EN, Adams H, Shinohara RT, Frangakis C, Brem H, Quinones-Hinojosa A: Postoperative mortality after surgery for brain tumors by patient insurance status in the United States. Arch Surg 147(11):1017-24, 2012.

Little RJ, D'Agostino R, Cohen ML, Dickersin K, Emerson SS, Farrar JT, Frangakis C, Hogan JW, Molenberghs G, Murphy SA, Neaton JD, Rotnitzky A, Scharfstein D, Shih WJ, Siegel JP, Stern H: The prevention and treatment of missing data in clinical trials. New England Journal of Medicine 367(14):1355-60, 2012.

Georgiades C, Geschwind JF, Harrison N, Hines-Peralta A, Liapi E, Hong K, Wu Z, Kamel I, Frangakis C: Lack of response after initial chemoembolization for hepatocellular carcinoma: does it predict failure of subsequent treatment? Radiology 265(1):115-23, 2012.

Shinohara RT, Frangakis CE, Platz E, Tsilidis K: Designs combining instrumental variables with case-control: estimating principal strata causal effects. International Journal of Biostatistics 8(1):1-21, 2012.

Shinohara RT, Frangakis CE, Lyketsos CG: A broad symmetry criterion for nonparametric validity of parametrically based tests in randomized trials. Biometrics 68(1):85-91, 2012.

Drye LT, Ismail Z, Porsteinsson AP, Rosenberg PB, Weintraub D, Marano C, Pelton G, Frangakis C, Rabins PV, Munro CA, Meinert CL, Devanand DP, Yesavage J, Mintzer JE, Schneider LS, Pollock BG, Lyketsos CG, CitAD Research Group: Citalopram for agitation in Alzheimer's disease: design and methods. Alzheimers & Dementia 8(2):121-30, 2012.

Petridou ET, Sergentanis TN, Panagopoulou P, Moschovi M, Polychronopoulou S, Baka M, Pourtsidis A, Athanassiadou F, Kalmanti M, Sidi V, Dessypris N, Frangakis C, Matsoukis IL, Stefanadis C, Skalkidou A, Stephansson O, Adami HO, Kieler H: In vitro fertilization and risk of childhood leukemia in Greece and Sweden. Pediatric Blood & Cancer 58(6):930-6, 2012.

Frangakis C, Geschwind JF, Kim D, Chen Y, Koteish A, Hong K, Liapi E, Georgiades CS: Chemoembolization decreases drop-off risk of hepatocellular carcinoma patients on the liver transplant list. Cardiovascular and Interventional Radiology 34(6):1254-61, 2011.

Peters ME, Vaidya V, Drye LT, Rosenberg PB, Martin BK, Porsteinsson AP, Frangakis CE, Mintzer J, Weintraub D, Schneider LS, Rabins PV, Munro CA, Meinert CL, Lyketsos CG, Dimitri A, for the DIADS-2 Research Group: Sertraline for the treatment of depression in Alzheimer disease: genetic influences. Journal of Geriatric Psychology and Neurology 24(4):222-228, 2011.

Barth AS, Kumordzie A, Frangakis C, Margulies KB, Cappola TP, Tomaselli GF: Reciprocal transcriptional regulation of metabolic and signaling pathways correlates with disease severity in heart failure. Circulation. Cardiovascular Genetics 4(5):475-83, 2011.

Tsapkini K, Frangakis CE, Hillis AE: The function of the left anterior temporal pole: evidence from acute stroke and infarct volume. Brain 134(Pt 10):3094-105, 2011.

Koliatsos VE, Cernak I, Xu L, Song Y, Savonenko A, Crain BJ, Eberhart CG, Frangakis CE, Melnikova T, Kim H, Lee D: A mouse model of blast injury to brain: initial pathological, neuropathological, and behavioral characterization. Journal of Neuropathology and Experimental Neurology 70(5):399-416, 2011.

Azur MJ, Stuart EA, Frangakis C, Leaf PJ: Multiple imputation by chained equations: what is it and how does it work? International Journal of Methods in Psychiatric Research 20(1):40-49, 2011.

Drye LT, Martin BK, Frangakis CE, Meinert CL, Mintzer JE, Munro CA, Porsteinsson AP, Rabins PV, Rosenberg PB, Schneider LS, Weintraub D, Lyketsos CG; for the DIADS-2 Research Group: Do treatment effects vary among differing baseline depression criteria in depression in Alzheimer's disease study 2 (DIADS-2)? International Journal of Geriatric Psychiatry 26(6):573-583, 2011.

Go VF, Frangakis C, Van Nam L, Sripaipan T, Bergenstrom A, Li F, Latkin C, Celentano DD, Quan VM: Characteristics of high-risk HIV-positive IDUs in Vietnam: implications for future interventions. Substance Use & Misuse 46(4):381-9, 2011.

Georgiades CS, Rodriguez R, Littrup PJ, Frangakis CE, Leveille R, Ahrar K, Atwell TD, Cadeddu J, Trimmer C, Durack JC, Hammers HJ, Meng MV, Raman S, Solomon SB, Zagoria RJ, McLennan G, Laberge JM, Gervais DA, Kee ST: Development of a research agenda for percutaneous renal tumor ablation: proceedings from a multidisciplinary research consensus panel. Journal of Vascular and Interventional Radiology 21(12):1807-16, 2010.

Achy-Brou AC, Frangakis CE, Griswold M: Estimating treatment effects of longitudinal designs using regression models on propensity scores. Biometrics 66(3):824-33, 2010.

Wible BC, Rilling WS, Drescher P, Hieb RA, Saeian K, Frangakis C, Chen Y, Eastwood D, Kim HS: Longitudinal quality of life assessment of patients with hepatocellular carcinoma after primary transarterial chemoembolization. Journal of Vascular and Interventional Radiology 21(7):1024-30, 2010.

Weintraub D, Rosenberg PB, Drye LT, Martin BK, Frangakis C, Mintzer JE, Porsteinsson AP, Schneider LS, Rabins PV, Munro CA, Meinert CL, Lyketsos CG, DIADS-2 Research Group: Sertraline for the treatment of depression in Alzheimer disease: week-24 outcomes. American Journal of Geriatric Psychiatry 18(4):332-40, 2010.

Rosenberg PB, Drye LT, Martin BK, Frangakis C, Mintzer JE, Weintraub D, Porsteinsson AP, Schneider LS, Rabins PV, Munro CA, Meinert CL, Lyketsos CG, DIADS-2 Research Group: Sertraline for the treatment of depression in Alzheimer disease. American Journal of Geriatric Psychiatry 18(2):136-145, 2010.

Postolache TT, Mortensen PB, Tonelli LH, Jiao X, Frangakis C, Soriano JJ, Qin P: Seasonal spring peaks of suicide in victims with and without prior history of hospitalization for mood disorders. Journal of Affective Disorders 121(1-2):88-93, 2010.

An MW, Frangakis CE, Musick BS, Yiannoutsos CT: The need for double-sampling designs in survival studies: an application to monitor PEPFAR. Biometrics 65(1):301-6, 2009.

Stuart EA, Azur M, Frangakis C, Leaf P: Multiple imputation with large data sets: a case study of the Children's Mental Health Initiative. American Journal of Epidemiology 169(9):1133-9, 2009.

Frangakis C: The calibration of treatment effects from clinical trials to target populations. Clinical Trials 6(2):136-40, 2009.

Tan EJ, Rebok GW, Yu Q, Frangakis CE, Carlson MC, Wang T, Ricks M, Tanner EK, McGill S, Fried LP: The long-term relationship between high-intensity volunteering and physical activity in older African American women. Journals of Gerontology Series B 64(2):304-11, 2009.

Cole SR, Frangakis CE: The consistency statement in causal inference: a definition or an assumption? Epidemiology 20(1):3-5, 2009.

 

 

Andre Hackman  Description: C:\Users\margo\my_doc\My Web Sites\Publication\UP_AR~11.gif (go to top of document)

Moss WJ, Norris DE, Mharakurwa S, Scott A, Mulenga M, Mason PR, Chipeta J, Thuma PE, Southern Africa ICEMR Team (includes Hackman A): Challenges and prospects for malaria elimination in the Southern Africa region. Acta Tropica 121(3):207-11, 2012.

Mharakurwa S, Thuma PE, Norris DE, Mulenga M, Chalwe V, Chipeta J, Munyati S, Mutambu S, Mason PR, Southern Africa ICEMR Team (includes Hackman A): Malaria epidemiology and control in Southern Africa. Acta Tropica 121(3):202-6, 2012.

Moss WJ, Norris DE, Mharakurwa S, Scott A, Mulenga M, Mason PR, Chipeta J, Thuma PE, Southern Africa ICEMR Team (includes Hackman A): Challenges and prospects for malaria elimination in the Southern Africa region. Acta Tropica 121(3):207-11, 2012.

Labrique AB, Christian P, Klemm RD, Rashid M, Shamim AA, Massie A, Schulze K, Hackman A, West KP Jr.: A cluster-randomized, placebo-controlled, maternal vitamin A or beta-carotene supplementation trial in Bangladesh: design and methods. Trials 12(1):102, 2011.

Colantuoni E, Surplus G, Hackman A, Arrighi HM, Brookmeyer R: Web-based application to project the burden of Alzheimer's disease. Alzheimer's & Dementia 6(5):425-8, 2010.

 

 

Kasper Hansen  Description: C:\Users\margo\my_doc\My Web Sites\Publication\UP_AR~11.gif (go to top of document)

Fortin JP, Fertig E, Hansen K: shinyMethyl: interactive quality control of Illumina 450k DNA methylation arrays in R. F1000Research 3:175, 2014.

Ladd-Acosta C, Hansen KD, Briem E, Fallin MD, Kaufmann WE, Feinberg AP: Common DNA methylation alterations in multiple brain regions in autism. Mol Psychiatry 19(8):862-71, 2014.

Frazee AC, Sabunciyan S, Hansen KD, Irizarry RA, Leek JT: Differential expression analysis of RNA-seq data at single-base resolution. Biostatistics 15(3):413-26, 2014.

Aryee MJ, Jaffe AE, Corrada-Bravo H, Ladd-Acosta C, Feinberg AP, Hansen KD, Irizarry RA: Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays. Bioinformatics 30(10):1363-9, 2014.

Hansen KD, Sabunciyan S, Langmead B, Nagy N, Curley R, Klein G, Klein E, Salamon D, Feinberg AP: Large-scale hypomethylated blocks associated with Epstein-Barr virus-induced B-cell immortalization. Genome Res 24(2):177-84, 2014.

Smith ML, Baggerly KA, Bengtsson H, Ritchie ME, Hansen KD: An open source IDAT parsing tool for Illumina microarrays. F1000Research 2:264, 2013.

Hansen KD, Langmead B, Irizarry RA: BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regions. Genome Biology 13(10):R83, 2012.

Herb BR, Wolschin F, Hansen KD, Aryee MJ, Langmead B, Irizarry R, Amdam GV, Feinberg AP: Reversible switching between epigenetic states in honeybee behavioral subcastes. Nature Neuroscience 15(10):1371-3, 2012.

Tung J, Barreiro LB, Johnson ZP, Hansen KD, Michopoulos V, Toufexis D, Michelini K, Wilson ME, Gilad Y: Social environment is associated with gene regulatory variation in the rhesus macaque immune system. Proceedings of the National Academy of Sciences 109(17):6490-5, 2012.

Munshaw S, Hwang HS, Torbenson M, Quinn J, Hansen KD, Astemborski J, Mehta SH, Ray SC, Thomas DL, Balagopal A: Laser captured hepatocytes show association of butyrylcholinesterase gene loss and fibrosis progression in hepatitis C-infected drug users. Hepatology 56(2):544-54, 2012.

Hansen KD, Irizarry RA, Wu Z: Removing technical variability in RNA-seq data using conditional quantile normalization. Biostatistics 13(2):204-16, 2012.

Hansen KD, Wu Z, Irizarry RA, Leek JT: Sequencing technology does not eliminate biological variability. Nature Biotechnology 29(7):572-3, 2011.

Hansen KD, Timp W, Bravo HC, Sabunciyan S, Langmead B, McDonald OG, Wen B, Wu H, Liu Y, Diep D, Briem E, Zhang K, Irizarry RA, Feinberg AP: Increased methylation variation in epigenetic domains across cancer types. Nature Genetics 43(8):768-75, 2011.

Brooks AN, Yang L, Duff MO, Hansen KD, Park JW, Dudoit S, Brenner SE, Graveley BR: Conservation of an RNA regulatory map between Drosophila and mammals. Genome Research 21(2):193-202, 2011.

Hansen KD, Brenner SE, Dudoit S: Biases in Illumina transcriptome sequencing caused by random hexamer priming. Nucleic Acids Research 38(12):e131, 2010.

Langmead B, Hansen KD, Leek JT: Cloud-scale RNA-sequencing differential expression analysis with Myrna. Genome Biology 11(8):R83, 2010.

modENCODE Consortium (includes Hansen KD), et al: Identification of functional elements and regulatory circuits by Drosophila modENCODE. Science 330(6012):1787-97, 2010.

Bullard JH, Purdom E, Hansen KD, Dudoit S: Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments. BMC Bioinformatics 11:94, 2010.

Hansen KD, Lareau LF, Blanchette M, Green RE, Meng Q, Rehwinkel J, Gallusser FL, Izaurralde E, Rio DC, Dudoit S, Brenner SE: Genome-wide identification of alternative splice forms down-regulated by nonsense-mediated mRNA decay in Drosophila. PLoS Genetics 5(6):e1000525, 2009.


 

 

Harris Jaffee Description: C:\Users\margo\my_doc\My Web Sites\Publication\UP_AR~11.gif(go to top of document)

McCall MN, Jaffee HA, Zelisko SJ, Sinha N, Hooiveld G, Irizarry RA, Zilliox MJ: The Gene Expression Barcode 3.0: improved data processing and mining tools. Nucleic Acids Res 42(1):D938-43, 2014.

McCall MN, Jaffee HA, Irizarry RA: fRMA ST: Frozen robust multiarray analysis for Affymetrix Exon and Gene ST arrays. Bioinformatics 28(23):3153-4, 2012.

Konstas AG, Quaranta L, Mikropoulos DG, Nasr MB, Russo A, Jaffee HA, Stewart JA, Stewart WC: Peak intraocular pressure and glaucomatous progression in primary open-angle glaucoma. Journal of Ocular Pharmacology and Therapeutics 28(1):26-32, 2012.

McCall MN, Uppal K, Jaffee HA, Zilliox MJ, Irizarry RA: The Gene Expression Barcode: leveraging public data repositories to begin cataloging the human and murine transcriptomes. Nucleic Acids Research 39(Database issue):D1011-5, 2011.

Wu H, Caffo B, Jaffee HA, Irizarry RA, Feinberg AP: Redefining CpG islands using hidden Markov models. Biostatistics 11(3):499-514, 2010.

 

 

Leah Jager Description: C:\Users\margo\my_doc\My Web Sites\Publication\UP_AR~11.gif(go to top of document)

Jager LR, Leek JT: An estimate of the science-wise false discovery rate and application to the top medical literature. Biostatistics 15(1):1-12, 2014.

Caudle KA, Fowler GO, Jager LR, Ruth DR: Discounting older data. WIREs Comp Stat 3(1):30-33, 2011.

Raj R, Guerra D, Sehli S, Nipp R, Perdue N, Alalawi R, Jager L, Nugent K: One hundred-foot walk test for functional assessment of clinic patients. Am J Med Sci 338(5):361-7, 2009.

 

Hongkai Ji   Description: C:\Users\margo\my_doc\My Web Sites\Publication\UP_AR~11.gif(go to top of document)

Wu H, Ji H: PolyaPeak: Detecting transcription factor binding sites from ChIP-seq using peak shape information. PLoS One 9(3):e89694, 2014.

Jaffe AE, Storey JD, Ji H, Leek JT: Gene set bagging for estimating the probability a statistically significant result will replicate. BMC Bioinformatics 14:360, 2013.

Kano S, Colantuoni C, Han F, Zhou Z, Yuan Q, Wilson A, Takayanagi Y, Lee Y, Rapoport J, Eaton W, Cascella N, Ji H, Goldman D, Sawa A: Genome-wide profiling of multiple histone methylations in olfactory cells: further implications for cellular susceptibility to oxidative stress in schizophrenia. Mol Psychiatry 18(7):740-2, 2013.

Wang J, Park JS, Wei Y, Rajurkar M, Cotton JL, Fan Q, Lewis BC, Ji H, Mao J: TRIB2 acts downstream of Wnt/TCF in liver cancer cells to regulate YAP and C/EBPα function. Mol Cell 51(2):211-25, 2013.

Wu G, Ji H: ChIPXpress: using publicly available gene expression data to improve ChIP-seq and ChIP-chip target gene ranking. BMC Bioinformatics 14(1):188, 2013.

Wei Y, Wu G, Ji H: Global mapping of transcription factor binding sites by sequencing chromatin surrogates: a perspective on experimental design, data analysis, and open problems. Stat Biosci 5(1):156-178, 2013.

Wu G, Yustein JT, McCall MN, Zilliox M, Irizarry RA, Zeller K, Dang CV, Ji H: ChIP-PED enhances the analysis of ChIP-seq and ChIP-chip data. Bioinformatics 29(9):1182-1189, 2013.

Ji H, Li X, Wang QF, Ning Y: Differential principal component analysis of ChIP-seq. Proc Natl Acad Sci 110(17):6789-94, 2013.

Newman RH, Hu J, Rho HS, Xie Z, Woodard C, Neiswinger J, Cooper C, Shirley M, Clark HM, Hu S, Hwang W, Seop Jeong J, Wu G, Lin J, Gao X, Ni Q, Goel R, Xia S, Ji H, Dalby KN, Birnbaum MJ, Cole PA, Knapp S, Ryazanov AG, Zack DJ, Blackshaw S, Pawson T, Gingras AC, Desiderio S, Pandey A, Turk BE, Zhang J, Zhu H, Qian J: Construction of human activity-based phosphorylation networks. Mol Syst Biol 9:655, 2013.

Wei Y, Li X, Wang QF, Ji H: iASeq: integrative analysis of allele-specificity of protein-DNA interactions in multiple ChIP-seq datasets. BMC Genomics 13(1):681, 2012.

Hwang W, Hackler L Jr, Wu G, Ji H, Zack DJ, Qian J: Dynamics of regulatory networks in the developing mouse retina. PLoS One 7(10):e46521, 2012.

Wu H, Ji H: JAMIE: A software tool for jointly analyzing multiple ChIP-chip experiments. Methods in Molecular Biology 802:363-75, 2012.

Ji H, Wu G, Zhan X, Nolan A, Koh C, De Marzo A, Doan HM, Fan J, Cheadle C, Fallahi M, Cleveland JL, Dang CV, Zeller KI: Cell-type independent MYC target genes reveal a primordial signature involved in biomass accumulation. PLoS One 6(10):e26057, 2011.

Wang QF, Wu G, Mi S, He F, Wu J, Dong J, Luo RT, Mattison R, Kaberlein JJ, Prabhakar S, Ji H, Thirman MJ: MLL fusion proteins preferentially regulate a subset of wild-type MLL target genes in the leukemic genome. Blood 117(25):6895-905, 2011.

Chen L, Wu G, Ji H: hmChIP: a database and web server for exploring publicly available human and mouse ChIP-seq and ChIP-chip data. Bioinformatics 27(10):1447-8, 2011.

Ji H, Jiang H, Ma W, Wong WH: Using CisGenome to analyze ChIP-chip and ChIP-seq data. Current Protocols in Bioinformatics Chapter 2:Unit2.13, 2011.

Sun Y, Fan XY, Cao DM, Tang W, He K, Zhu JY, He JX, Bai MY, Zhu S, Oh E, Patil S, Kim TW, Ji H, Wong WH, Rhee SY, Wang ZY: Integration of brassinosteroid signal transduction with the transcription network for plant growth regulation in Arabidopsis. Developmental Cell 19(5):765-77, 2010.

Kim K, Doi A, Wen B, Ng K, Zhao R, Cahan P, Kim J, Aryee MJ, Ji H, Ehrlich LI, Yabuuchi A, Takeuchi A, Cunniff KC, Hongguang H, McKinney-Freeman S, Naveiras O, Yoon TJ, Irizarry RA, Jung N, Seita J, Hanna J, Murakami P, Jaenisch R, Weissleder R, Orkin SH, Weissman IL, Feinberg AP, Daley GQ: Epigenetic memory in induced pluripotent stem cells. Nature 467(7313):285-90, 2010.

Ji H: Computational analysis of ChIP-seq data. Methods in Molecular Biology 674:143-59, 2010.

Huang CR, Schneider AM, Lu Y, Niranjan T, Shen P, Robinson MA, Steranka JP, Valle D, Civin CI, Wang T, Wheelan SJ, Ji H, Boeke JD, Burns KH: Mobile interspersed repeats are major structural variants in the human genome. Cell 141(7):1171-82, 2010.

Wu H, Ji H: JAMIE: joint analysis of multiple ChIP-chip experiments. Bioinformatics 26(15):1864-70, 2010.

Lee EY, Ji H, Ouyang Z, Zhou B, Ma W, Vokes SA, McMahon AP, Wong WH, Scott MP: Hedgehog pathway-regulated gene networks in cerebellum development and tumorigenesis. Proceedings of the National Academy of Sciences 107(21):9736-41, 2010.

Ji H, Liu XS: Analyzing 'omics data using hierarchical models. Nature Biotechnology 28(4):337-40, 2010.

Niakan KK, Ji H, Maehr R, Vokes SA, Rodolfa KT, Sherwood RI, Yamaki M, Dimos JT, Chen AE, Melton DA, McMahon AP, Eggan K: Sox17 promotes differentiation in mouse embryonic stem cells by directly regulating extraembryonic gene expression and indirectly antagonizing self-renewal. Genes and Development 24(3):312-26, 2010.

Judy JT, Ji H: TileProbe: modeling tiling array probe effects using publicly available data. Bioinformatics 25(18):2369-75, 2009.

Nishi Y, Ji H, Wong WH, McMahon AP, Vokes SA: Modeling the spatio-temporal network that drives patterning in the vertebrate central nervous system. Biochimica et Biophysica Acta 1789(4):299-305, 2009.

 

 

 

Jeffrey Leek   Description: C:\Users\margo\my_doc\My Web Sites\Publication\UP_AR~11.gif(go to top of document)

Hayes LN, Severance EG, Leek JT, Gressitt KL, Rohleder C, Coughlin JM, Leweke FM, Yolken RH, Sawa A: Inflammatory molecular signature associated with infectious agents in psychosis. Schizophr Bull 40(5):963-72, 2014.

Frazee AC, Sabunciyan S, Hansen KD, Irizarry RA, Leek JT: Differential expression analysis of RNA-seq data at single-base resolution. Biostatistics 15(3):413-26, 2014.

Jaffe AE, Storey JD, Ji H, Leek JT: Gene set bagging for estimating the probability a statistically significant result will replicate. BMC Bioinformatics 14:360, 2013.

Jager LR, Leek JT: An estimate of the science-wise false discovery rate and application to the top medical literature. Biostatistics 15(1):1-12, 2014.

Boca S, Corrada Bravo H, Caffo B, Leek JT, Parmigiani G: A decision-theory approach to interpretable set analysis for high-dimensional data. Biometrics 69(3):614-623, 2013.

Marchionni L, Afsari B, Geman D, Leek JT: A simple and reproducible breast cancer prognostic test. BMC Genomics 14(1):336, 2013.

Leek JT, Salzberg SL: Sequestration: inadvertently killing biomedical research to score political points. Genome Biol 14(3):109, 2013.

Pirooznia M, Seifuddin F, Goes FS, Leek JT, Zandi PP: SVAw - a web-based application tool for automated surrogate variable analysis of gene expression studies. Source Code Biol Med 8(1):8, 2013.

Corrada Bravo H, Pihur V, McCall M, Irizarry RA, Leek JT: Gene expression anti-profiles as a basis for accurate universal cancer signatures. BMC Bioinformatics 13(1):272, 2012.

Leek JT, Johnson WE, Parker HS, Jaffe AE, Storey JD: The sva package for removing batch effects and other unwanted variation in high-throughput experiments. Bioinformatics 28(6):882-3, 2012.

Leek JT, Taub MA, Rasgon JL: A statistical approach to selecting and confirming validation targets in -omics experiments. BMC Bioinformatics 13(1):150, 2012.

Parker HS, Leek JT: The practical effect of batch on genomic prediction. Statistical Applications in Genetics and Molecular Biology 11(3):Article 10, 2012.

Jaffe AE, Feinberg AP, Irizarry RA, Leek JT: Significance analysis and statistical dissection of variably methylated regions. Biostatistics 13(1):166-78, 2012.

Leek JT, Peng RD, Anderson RR: Personalized medicine: Keep a way open for tailored treatments. Nature 484(7394):318, 2012.

Jaffe AE, Murakami P, Lee H, Leek JT, Fallin MD, Feinberg AP, Irizarry RA: Bump hunting to identify differentially methylated regions in epigenetic epidemiology studies. International Journal of Epidemiology 41(1):200-9, 2012.

Frazee AC, Langmead B, Leek JT: ReCount: A multi-experiment resource of analysis-ready RNA-seq gene count datasets. BMC Bioinformatics 12(1):449, 2011.

Leek JT, Taub MA, Pineda FJ: Cooperation between referees and authors increases peer review accuracy. PLoS One 6(11):e26895, 2011.

Hansen KD, Wu Z, Irizarry RA, Leek JT: Sequencing technology does not eliminate biological variability. Nature Biotechnology 29(7):572-3, 2011.

Leek JT: Asymptotic conditional singular value decomposition for high-dimensional genomic data. Biometrics 67(2):344-52, 2011.

Colantuoni C, Lipska BK, Ye T, Hyde TM, Tao R, Leek JT, Colantuoni EA, Elkahloun AG, Herman MM, Weinberger DR, Kleinman JE: Temporal dynamics and genetic control of transcription in the human prefrontal cortex. Nature 478(7370):519-23, 2011.

Desai KH, Tan CS, Leek JT, Maier RV, Tompkins RG, Storey JD, and the Inflammation and the Host Response to Injury Large-Scale Collaborative Research Program: Dissecting inflammatory complications in critically injured patients by within-patient gene expression changes: a longitudinal clinical genomics study. PLoS Medicine 8(9):e1001093, 2011.

Leek JT, Storey JD: The joint null criterion for multiple hypothesis tests. Statistical Applications in Genetics and Molecular Biology 10(1):Article 28, 2011.

Woo S, Leek JT, Storey JD: A computationally efficient modular optimal discovery procedure. Bioinformatics 27(4):509-15, 2011.

Leek JT, Scharpf RB, Bravo HC, Simcha D, Langmead B, Johnson WE, Geman D, Baggerly K, Irizarry RA: Tackling the widespread and critical impact of batch effects in high-throughput data. Nature Reviews Genetics 11(10):733-9, 2010.

Langmead B, Hansen KD, Leek JT: Cloud-scale RNA-sequencing differential expression analysis with Myrna. Genome Biology 11(8):R83, 2010.

Lu R, Markowetz F, Unwin RD, Leek JT, Airoldi EM, MacArthur BD, Lachmann A, Rozov R, Ma'ayan A, Boyer LA, Troyanskaya OG, Whetton AD, Lemischka IR: Systems-level dynamic analyses of fate change in murine embryonic stem cells. Nature 462(7271):358-62, 2009.

Leek JT: The tspair package for finding top scoring pair classifiers in R. Bioinformatics 25(9):1203-4, 2009.

 

 

 

Martin Lindquist   Description: C:\Users\margo\my_doc\My Web Sites\Publication\UP_AR~11.gif(go to top of document)

Munafò M, Noble S, Browne WJ, Brunner D, Button K, Ferreira J, Holmans P, Langbehn D, Lewis G, Lindquist M, Tilling K, Wagenmakers EJ, Blumenstein R: Scientific rigor and the art of motorcycle maintenance. Nat Biotechnol 32(9):871-3, 2014.

Atlas LY, Lindquist MA, Bolger N, Wager TD: Brain mediators of the effects of noxious heat on pain. Pain 155(8):1632-1648, 2014.

Degras D, Lindquist MA: A hierarchical model for simultaneous detection and estimation in multi-subject fMRI studie. Neuroimage 98C:61-72, 2014.

Shou H, Eloyan A, Lee S, Zipunnikov V, Crainiceanu AN, Nebel MB, Caffo B, Lindquist MA, Crainiceanu CM: Quantifying the reliability of image replication studies: The image intraclass correlation coefficient (I2C2). Cogn Affect Behav Neurosci 13(4):714-724, 2013.

Cribben I, Wager TD, Lindquist MA: Detecting functional connectivity change points for single-subject fMRI data. Front Comput Neurosci 7:143, 2013.

Lindquist MA, Caffo B, Crainiceanu C: Ironing out the statistical wrinkles in "ten ironic rules." Neuroimage 81:499-502, 2013.

Leigh R, Oishi K, Hsu J, Lindquist M, Gottesman RF, Jarso S, Crainiceanu C, Mori S, Hillis AE: Acute lesions that impair affective empathy. Brain 136(Pt 8):2539-49, 2013.

Wager TD, Atlas LY, Lindquist MA, Roy M, Woo CW, Kross E: An fMRI-based neurologic signature of physical pain. N Engl J Med 368(15):1388-97, 2013.

Lindquist MA: Functional causal mediation analysis with an application to brain connectivity. JASA 107(500):1297-1309, 2012.

Yue YR, Lindquist MA, Loh JM: Meta-analysis of functional neuroimaging data using Bayesian nonparametric binary regression. Annals of Applied Statistics 6(2):697-718, 2012.

Atlas LY, Whittington RA, Lindquist MA, Wielgosz J, Sonty N, Wager TD: Dissociable influences of opiates and expectations on pain. Journal of Neuroscience 32(23):8053-64, 2012.

Cribben I, Haraldsdottir R, Atlas LY, Wager TD, Lindquist MA: Dynamic connectivity regression: determining state-related changes in brain connectivity. Neuroimage 61(4):907-20, 2012.

Rao R, Jonsson NJ, Ventura C, Gelman R, Lindquist MA, Casper DS, Chiang MF: Plus disease in retinopathy of prematurity: diagnostic impact of field of view. Retina 32(6):1148-55, 2012.

Lindquist MA, Spicer J, Asllani I, Wager TD: Estimating and testing variance components in a multi-level GLM. Neuroimage 59(1):490-501, 2012.

Lindquist MA, Sobel ME: Graphical models, potential outcomes and causal inference: comment on Ramsey, Spirtes and Glymour. Neuroimage 57(2):334-6, 2011.

Yue YR, Loh JM, Lindquist MA: Adaptive spatial smoothing of fMRI images. Statistics & Its Interface 3(1):3-14, 2010.

Lindquist MA: The benefits of rapid 3D fMRI. International Journal of Imaging Systems & Technology 20(1):14-22, 2010.

Atlas LY, Bolger N, Lindquist MA, Wager TD: Brain mediators of predictive cue effects on perceived pain. Journal of Neuroscience 30(39):12964-77, 2010.

Kriegeskorte N, Lindquist MA, Nichols TE, Poldrack RA, Vul E: Everything you never wanted to know about circular analysis, but were afraid to ask. Journal of Cerebral Blood Flow & Metabolism 30(9):1551-7, 2010.

Ottowitz WE, Deckersbach T, Savage CR, Lindquist MA, Dougherty DD: Neural correlates of strategic processes underlying episodic memory in women with major depression: A 15O-PET study. Journal of Neuropsychiatry & Clinical Neurosciences 22(2):218-30, 2010.

Robinson LF, Wager TD, Lindquist MA: Change point estimation in multi-subject fMRI studies. Neuroimage 49(2):1581-92, 2010.

Lindquist MA, McKeague IW: Logistic regression with Brownian-like predictors. Journal of the American Statistical Association 104(488):1575-1585, 2009.

Lindquist MA, Gelman A: Correlations and multiple comparisons in functional imaging: a statistical perspective (commentary on Vul et al., 2009). Perspectives on Psychological Science 4(3):310-313, 2009.

Wager TD, Waugh CE, Lindquist M, Noll DC, Fredrickson BL, Taylor SF: Brain mediators of cardiovascular responses to social threat: part I: Reciprocal dorsal and ventral sub-regions of the medial prefrontal cortex and heart-rate reactivity. Neuroimage 47(3):821-35, 2009.

Wager TD, van Ast VA, Hughes BL, Davidson ML, Lindquist MA, Ochsner KN: Brain mediators of cardiovascular responses to social threat, part II: Prefrontal-subcortical pathways and relationship with anxiety. Neuroimage 47(3):836-51, 2009.

Lindquist MA, Meng Loh J, Atlas LY, Wager TD: Modeling the hemodynamic response function in fMRI: efficiency, bias and mis-modeling. Neuroimage 45(1 Suppl):S187-98, 2009.

 

 

 

Thomas Louis   Description: C:\Users\margo\my_doc\My Web Sites\Publication\UP_AR~11.gif(go to top of document)

Jerome GJ, Dalcin A, Coughlin JW, Fitzpatrick S, Wang NY, Durkin N, Yeh HC, Charleston J, Pozefsky T, Daumit GL, Clark JM, Louis TA, Appel LJ: Longitudinal accuracy of web-based self-reported weights: results from the Hopkins POWER trial. J Med Internet Res 16(7):e173, 2014.

Ricotta EE, Frese SA, Choobwe C, Louis TA, Shiff CJ: Evaluating local vegetation cover as a risk factor for malaria transmission: a new analytical approach using ImageJ. Malar J 13(1):94, 2014.

Berenholtz SM, Lubomski LH, Weeks K, Goeschel CA, Marsteller JA, Pham JC, Sawyer MD, Thompson DA, Winters BD, Cosgrove SE, Yang T, Louis TA, Meyer Lucas B, George CT, Watson SR, Albert-Lesher MI, St Andre JR, Combes JR, Bohr D, Hines SC, Battles JB, Pronovost PJ: Eliminating central line-associated bloodstream infections: a national patient safety imperative. Infect Control Hosp Epidemiol 35(1):56-62, 2014.

Taub MA, Schwender HR, Younkin SG, Louis TA, Ruczinski I: On multi-marker tests for association in case-control studies. Front Genet 4:252, 2013.

Kempen JH, Sugar EA, Jaffe GJ, Acharya NR, Dunn JP, Elner SG, Lightman SL, Thorne JE, Vitale AT, Altaweel MM, Multicenter Uveitis Steroid Treatment (MUST) Trial Research Group (includes Louis T): Fluorescein angiography versus optical coherence tomography for diagnosis of uveitic macular edema. Ophthalmology 120(9):1852-9, 2013.

Friedman DS, Holbrook JT, Ansari H, Alexander J, Burke A, Reed SB, Katz J, Thorne JE, Lightman SL, Kempen JH, MUST Research Group (includes Louis T): Risk of elevated intraocular pressure and glaucoma in patients with uveitis: results of the multicenter uveitis steroid treatment trial. Ophthalmology 120(8):1571-9, 2013.

Matar DS, Pham JC, Louis TA, Berenholtz SM: Achieving and sustaining ventilator-associated pneumonia-free time among intensive care units (ICUs): evidence from the Keystone ICU Quality Improvement Collaborative. Infect Control Hosp Epidemiol 34(7):740-3, 2013.

Li Q, Schwender H, Louis TA, Fallin MD, Ruczinski I: Efficient simulation of epistatic interactions in case-parent trio. Hum Hered 75(1):12-22, 2013.

Forrest CB, Bevans KB, Riley AW, Crespo R, Louis TA: Health and school outcomes during children's transition into adolescence. J Adolesc Health 52(2):186-94, 2013.

Jerome GJ, Rubin RR, Clark JM, Dalcin A, Coughlin JW, Yeh HC, Miller ER, Wang NY, Louis TA, Durkin N, Charleston J, Daumit GL, Appel LJ: From efficacy to effectiveness: lessons learned from the Practice-Based Opportunities for Weight Reduction (POWER) trial. J Comp Eff Res 1(3):213-6, 2012.

Eckel SP, Louis TA, Chaves PH, Fried LP, Margolis AH: Modification of the association between ambient air pollution and lung function by frailty status among older adults in the cardiovascular health study. American Journal of Epidemiology 176(3):214-23, 2012.

Sen HN, Drye LT, Goldstein DA, Larson TA, Merrill PT, Pavan PR, Sheppard JD, Burke A, Srivastava SK, Jabs DA, Multicenter Uveitis Steroid Treatment (MUST) Trial Research Group (includes Louis T): Hypotony in patients with uveitis: The Multicenter Uveitis Steroid Treatment (MUST) Trial. Ocular Immunology & Inflammation 20(2):104-12, 2012.

Mharakurwa S, Thuma PE, Norris DE, Mulenga M, Chalwe V, Chipeta J, Munyati S, Mutambu S, Mason PR, Southern Africa ICEMR Team (includes Louis TA): Malaria epidemiology and control in Southern Africa. Acta Tropica 121(3):202-6, 2012.

Moss WJ, Norris DE, Mharakurwa S, Scott A, Mulenga M, Mason PR, Chipeta J, Thuma PE, Southern Africa ICEMR Team (includes Louis TA): Challenges and prospects for malaria elimination in the Southern Africa region. Acta Tropica 121(3):207-11, 2012.

Allon M, Zhang L, Maya ID, Bray MS, Fernandez JR, Dialysis Access Consortium (DAC) Study Investigators (includes Louis T): Association of factor V gene polymorphism with arteriovenous graft failure. American Journal of Kidney Diseases 59(5):682-8, 2012.

Taub MA, Schwender H, Beaty TH, Louis TA, Ruczinski I: Incorporating genotype uncertainties into the genotypic TDT for main effects and gene-environment interactions. Genetic Epidemiology 36(3):244-52, 2012.

Frick KD, Drye LT, Kempen JH, Dunn JP, Holland GN, Latkany P, Rao NA, Sen HN, Sugar EA, Thorne JE, Wang RC, Holbrook JT, Multicenter Uveitis Steroid Treatment-MUST Trial Research Group (includes Louis TA): Associations among visual acuity and vision- and health-related quality of life among patients in the multicenter uveitis steroid treatment trial. Investigative Ophthalmology & Visual Science 53(3):1169-76, 2012.

Davidian M, Louis TA: Why statistics? Science 336(6077):12, 2012.

Sutcliffe CG, Kobayashi T, Hamapumbu H, Shields T, Mharakurwa S, Thuma PE, Louis TA, Glass G, Moss WJ: Reduced risk of malaria parasitemia following household screening and treatment: a cross-sectional and longitudinal cohort study. PLoS One 7(2):e31396, 2012.

Myers JA, Louis TA: Comparing treatments via the propensity score: stratification or modeling? Health Serv Outcomes Res Methodol 12(1):29-43, 2012.

Appel LJ, Clark JM, Yeh HC, Wang NY, Coughlin JW, Daumit G, Miller ER 3rd, Dalcin A, Jerome GJ, Geller S, Noronha G, Pozefsky T, Charleston J, Reynolds JB, Durkin N, Rubin RR, Louis TA, Brancati FL: Comparative effectiveness of weight-loss interventions in clinical practice. New England Journal of Medicine 365(21):1959-68, 2011.

Gangaputra SS, Altaweel MM, Peng Q, Friedman DS, Rao PK, Foster CS, Kim RY, Reed SB, Srivastava SK, Wong IG, Kempen JH, MUST Trial Research Group (includes Louis T): Morphologic assessment for glaucoma in the Multicenter Uveitis Steroid Treatment (MUST) trial. Ocular Immunology and Inflammation 19(4):267-74, 2011.

Louis TA, Paddock SM: Percentile-based empirical distribution function estimates for performance evaluation of healthcare providers. Applied Statistics 60(4):575-589, 2011.

Forrest CB, Bevans KB, Riley AW, Crespo R, Louis TA: School outcomes of children with special health care needs. Pediatrics 128(2):303-12, 2011.

Eckel SP, Bandeen-Roche K, Chaves PH, Fried LP, Louis TA: Surrogate screening models for the low physical activity criterion of frailty. Aging Clinical and Experimental Research 23(3):209-16, 2011.

The Multicenter Uveitis Steroid Treatment (MUST) Trial Research Group; Writing Committee, Kempen JH, Altaweel MM, Holbrook JT, Jabs DA, Louis TA, Sugar EA, Thorne JE: Randomized comparison of systemic anti-inflammatory therapy versus fluocinolone acetonide implant for intermediate, posterior, and panuveitis: The Multicenter Uveitis Steroid Treatment Trial. Ophthalmology 118(10):1916-1926, 2011.

An MW, Reich NG, Crawford SO, Brookmeyer R, Louis TA, Nelson KE: A stochastic simulator of a blood product donation environment with demand spikes and supply shock. PLoS One 6(7):e21752, 2011.

Dixon BS, Beck GJ, Dember LM, Vazquez MA, Greenberg A, Delmez JA, Allon M, Himmelfarb J, Hu B, Greene T, Radeva MK, Davidson IJ, Ikizler TA, Braden GL, Lawson JH, Cotton JR Jr, Kusek JW, Feldman HI, Dialysis Access Consortium (DAC) Study Group (includes Louis T): Use of aspirin associates with longer primary patency of hemodialysis grafts. Journal of the American Society of Nephrology 22(4):773-81, 2011.

Rosenheck RA, Krystal JH, Lew R, Barnett PG, Fiore L, Valley D, Thwin SS, Vertrees JE, Liang MH, CSP555 Research Group (includes Louis T): Long-acting risperidone and oral antipsychotics in unstable schizophrenia. New England Journal of Medicine 364(9):842-51, 2011.

Ho YY, Parmigiani G, Louis TA, Cope LM: Modeling liquid association. Biometrics 67(1):133-41, 2011.

Crump KS, Chen C, Louis TA: The future use of in vitro data in risk assessment to set human exposure standards: challenging problems and familiar solutions. Environmental Health Perspectives 118(10):1350-4, 2010.

Zhou Y, Dominici F, Louis TA: A smoothing approach for masking spatial data. Annals of Applied Statistics 4(3):1451-1475, 2010.

Cohen SA, Ahmed S, Klassen AC, Agree EM, Louis TA, Naumova EN: Childhood Hib vaccination and pneumonia and influenza burden in US seniors. Vaccine 28(28):4462-9, 2010.

Yeh HC, Clark JM, Emmons KE, Moore RH, Bennett GG, Warner ET, Sarwer DB, Jerome GJ, Miller ER, Volger S, Louis TA, Wells B, Wadden TA, Colditz GA, Appel LJ: Independent but coordinated trials: insights from the practice-based Opportunities for Weight Reduction Trials Collaborative Research Group. Clinical Trials 7(4):322-32, 2010.

Paynter NP, Sharrett AR, Louis TA, Rosamond W, Folsom AR, Coresh J: Paired comparison of observed and expected coronary heart disease rates over 12 years from the Atherosclerosis Risk In Communities Study. Annals of Epidemiology 20(9):683-690, 2010.

Cohen SA, Klassen AC, Ahmed S, Agree EM, Louis TA, Naumova EN: Trends for influenza and pneumonia hospitalization in the older population: age, period, and cohort effects. Epidemiology and Infection 138(8):1135-45, 2010.

Li Q, Fallin MD, Louis TA, Lasseter VK, McGrath JA, Avramopoulos D, Wolyniec PS, Valle D, Liang KY, Pulver AE, Ruczinski I: Detection of SNP-SNP interactions in trios of parents with schizophrenic children. Genetic Epidemiology 34(5):396-406, 2010.

Louis TA: Discussion of "conundrums with uncertainty factors." Risk Analysis 30(3):346-8, 2010.

Crump KS, Chen C, Chiu WA, Louis TA, Portier CJ, Subramaniam RP, White PD: What role for biologically based dose-response models in estimating low-dose risk? Environmental Health Perspectives 118(5):585-8, 2010.

Louis TA, Ruczinski I: Efficient evaluation of ranking procedures when the number of units is large, with application to SNP identification. Biometrical Journal 52(1):34-49, 2010.

Carvalho BS, Louis TA, Irizarry RA: Quantifying uncertainty in genotype calls. Bioinformatics 26(2):242-9, 2010.

Zhou Y, Dominici F, Louis TA: Racial disparities in risks of mortality in a sample of the US Medicare population. Applied Statistics 59(2):319-339, 2009.

D'Armiento JM, Scharf SM, Roth MD, Connett JE, Ghio A, Sternberg D, Goldin JG, Louis TA, Mao JT, O'Connor GT, Ramsdell JW, Ries AL, Schluger NW, Sciurba FC, Skeans MA, Voelker H, Walter RE, Wendt CH, Weinmann GG, Wise RA, Foronjy RF: Eosinophil and T cell markers predict functional decline in COPD patients. Respiratory Research 10:113, 2009.

Luo S, Crainiceanu CM, Louis TA, Chatterjee N: Bayesian inference for smoking cessation with a latent cure state. Biometrics 65(3):970-8, 2009.

Chu H, Chen S, Louis TA: Random effects models in a meta-analysis of the accuracy of two diagnostic tests without a gold standard. Journal of the American Statistical Association 104(486):512-523, 2009.

Dixon BS, Beck GJ, Vazquez MA, Greenberg A, Delmez JA, Allon M, Dember LM, Himmelfarb J, Gassman JJ, Greene T, Radeva MK, Davidson IJ, Ikizler TA, Braden GL, Fenves AZ, Kaufman JS, Cotton JR Jr, Martin KJ, McNeil JW, Rahman A, Lawson JH, Whiting JF, Hu B, Meyers CM, Kusek JW, Feldman HI, DAC Study Group (includes Louis T): Effect of dipyridamole plus aspirin on hemodialysis graft patency. New England Journal of Medicine 360(21):2191-201, 2009.

Lin R, Louis TA, Paddock SM, Ridgeway G: Ranking USRDS provider specific SMRs from 1998-2001. Health Services and Outcomes Research Methodology 9(1):22-38, 2009.

Louis TA, Zeger SL: Effective communication of standard errors and confidence intervals. Biostatistics 10(1):1-2, 2009..

 

 

Aidan McDermott  Description: C:\Users\margo\my_doc\My Web Sites\Publication\UP_AR~11.gif(go to top of document)

Shafi T, Sozio SM, Bandeen-Roche KJ, Ephraim PL, Luly JR, St Peter WL, McDermott A, Scialla JJ, Crews DC, Tangri N, Miskulin DC, Michels WM, Jaar BG, Herzog CA, Zager PG, Meyer KB, Wu AW, Boulware LE, DEcIDE Network Patient Outcomes in End Stage Renal Disease Study Investigators: Predialysis systolic BP variability and outcomes in hemodialysis patients. J Am Soc Nephrol 25(4):799-809, 2014.

Crews DC, Scialla JJ, Liu J, Guo H, Bandeen-Roche K, Ephraim PL, Jaar BG, Sozio SM, Miskulin DC, Tangri N, Shafi T, Meyer KB, Wu AW, Powe NR, Boulware LE, Developing Evidence to Inform Decisions about Effectiveness (DEcIDE) Patient Outcomes in End Stage Renal Disease Study Investigators (includes McDermott A): Predialysis health, dialysis timing, and outcomes among older United States adults. J Am Soc Nephrol 25(2):370-9, 2014.

Miskulin DC, Zhou J, Tangri N, Bandeen-Roche K, Cook C, Ephraim PL, Crews DC, Scialla JJ, Sozio SM, Shafi T, Jaar BG, Boulware LE, DEcIDE Network Patient Outcomes in End Stage Renal Disease Study Investigators (includes McDermott A): Trends in anemia management in US hemodialysis patients 2004-2010. BMC Nephrol 14:264, 2013.

St Peter WL, Sozio SM, Shafi T, Ephraim PL, Luly J, McDermott A, Bandeen-Roche K, Meyer KB, Crews DC, Scialla JJ, Miskulin DC, Tangri N, Jaar BG, Michels WM, Wu AW, Boulware LE, DEcIDE Network Patient Outcomes in End-Stage Renal Disease Study Investigators: Patterns in blood pressure medication use in US incident dialysis patients over the first 6 months. BMC Nephrol 14:249, 2013.

Cummings DA, Iamsirithaworn S, Lessler JT, McDermott A, Prasanthong R, Nisalak A, Jarman RG, Burke DS, Gibbons RV: The impact of the demographic transition on dengue in Thailand: insights from a statistical analysis and mathematical modeling. PLoS Medicine 6(9):e1000139, 2009.

Peng RD, Bell ML, Geyh AS, McDermott A, Zeger SL, Samet JM, Dominici F: Emergency admissions for cardiovascular and respiratory diseases and the chemical composition of fine particle air pollution. Environmental Health Perspectives 117(6):957-63, 2009.

 

 

 

John McGready   Description: C:\Users\margo\my_doc\My Web Sites\Publication\UP_AR~11.gif(go to top of document)

Sheehan MC, Burke TA, Navas-Acien A, Breysse PN, McGready J, Fox MA: Global methylmercury exposure from seafood consumption and risk of developmental neurotoxicity: a systematic review. Bull World Health Organ 92(4):254-269F, 2014.

Hummers LK, Dugowson CE, Dechow FJ, Wise RA, Gregory J, Michalek J, Yenokyan G, McGready J, Wigley FM: A multi-centre, blinded, randomised, placebo-controlled, laboratory-based study of MQX-503, a novel topical gel formulation of nitroglycerine, in patients with Raynaud phenomenon. Ann Rheum Dis 72(12):1962-7, 2013.

Alade Y, Tunkel D, Schulze K, McGready J, Jallo G, Ain M, Yost T, Hoover-Fong J: Cross-sectional assessment of pain and physical function in skeletal dysplasia patients. Clin Genet 84(3):237-43, 2013.

Schulze KJ, Alade YA, McGready J, Hoover-Fong JE: Body mass index (BMI): The case for condition-specific cut-offs for overweight and obesity in skeletal dysplasias. Am J Med Genet A 161(8):2110-2, 2013.

Murphy SM, McGready J, Griswold ME, Sylvia ML: A method for estimating cost savings for population health management program. Health Serv Res 48(2 Pt 1):582-602, 2013.

Cutler N, Balicki M, Finkelstein M, Wang J, Gehlbach P, McGready J, Iordachita I, Taylor R, Handa JT: Auditory force feedback substitution improves surgical precision during simulated ophthalmic surgery. Invest Ophthalmol Vis Sci 54(2):1316-24, 2013.

McGready J, Brookmeyer R: Evaluation of student outcomes in online vs. campus biostatistics education in a graduate school of public health. Preventive Medicine 56(2):142-4, 2013.

Cope JR, Doocy S, Frattaroli S, McGready J: Household expenditures as a measure of socioeconomic status among Iraqis displaced in Jordan and Syria. World Health Popul 14(1):19-30, 2012.

Lee RW, McGready J, Conley SK, Yanjanin NM, Nowaczyk MJ, Porter FD: Growth charts for individuals with Smith-Lemli-Opitz syndrome. Am J Med Genet A 158A(11):2707-13, 2012.

Sammon MR, Doyle D, Hopkins E, Sol-Church K, Stabley DL, McGready J, Schulze K, Alade Y, Hoover-Fong J, Gripp KW: Normative growth charts for individuals with Costello syndrome. Am J Med Genet A 158A(11):2692-9, 2012.

Sheehan MC, Burke TA, Breysse PN, Navas-Acien A, McGready J, Fox MA: Association of markers of chronic viral hepatitis and blood mercury levels in US reproductive-age women from NHANES 2001-2008: a cross-sectional study. Environmental Health 11(1):62, 2012.

Ratchford JN, Endres CJ, Hammoud DA, Pomper MG, Shiee N, McGready J, Pham DL, Calabresi PA: Decreased microglial activation in MS patients treated with glatiramer acetate. Journal of Neurology 259(6):1199-205, 2012.

Collaco JM, McGready J, Green DM, Naughton KM, Watson CP, Shields T, Bell SC, Wainwright CE; for the ACFBAL Study Group, Garry R. Cutting: Effect of temperature on cystic fibrosis lung disease and infections: a replicated cohort study. PLoS One 6(11):e27784, 2011.

Zablotsky Kufel JS, Resnick BA, Fox MA, McGready J, Yager JP, Burke TA: The impact of local environmental health capacity on foodborne illness morbidity in Maryland. American Journal of Public Health 101(8):1495-500, 2011.

Aggarwal R, Gupte N, Kass N, Taylor H, Ali J, Bhan A, Aggarwal A, Sisson SD, Kanchanaraksa S, McKenzie-White J, McGready J, Miotti P, Bollinger RC: A comparison of online versus on-site training in health research methodology: a randomized study. BMC Medical Education 11(1):37, 2011.

Stonemetz J, Pham JC, Necochea AJ, McGready J, Hody RE, Martinez EA: Reduction of regulated medical waste using lean sigma results in financial gains for hospital. Anesthesiology Clinics 29(1):145-52, 2011.

Collaco JM, Blackman SM, McGready J, Naughton KM, Cutting GR: Quantification of the relative contribution of environmental and genetic factors to variation in cystic fibrosis lung function. Journal of Pediatrics 157(5):802-7, 2010.

Cettomai D, Hiremath G, Ratchford J, Venkatesan A, Greenberg BM, McGready J, Pardo CA, Kerr DA, Frohman E, Balcer LJ, McArthur JC, Calabresi PA: Associations between retinal nerve fiber layer abnormalities and optic nerve examination. Neurology 75(15):1318-25, 2010.

Rosenberg RE, Law JK, Yenokyan G, McGready J, Kaufmann WE, Law PA: Characteristics and concordance of autism spectrum disorders among 277 twin pairs. Archives of Pediatrics and Adolescent Medicine 163(10):907-14, 2009.

 

 

Lucy Meoni  Description: C:\Users\margo\my_doc\My Web Sites\Publication\UP_AR~11.gif (go to top of document)

Jaar BG, Zhang L, Chembrovich SV, Sozio SM, Shafi T, Scialla JJ, Tomaselli GF, Lima JA, Kao WH, Parekh RS, Meoni LA: Incidental findings on cardiac computed tomography in incident hemodialysis patients: the predictors of arrhythmic and cardiovascular events in end-stage renal disease (PACE) study. BMC Nephrol 15(1):68, 2014.

Salter ML, McAdams-Demarco MA, Law A, Kamil RJ, Meoni LA, Jaar BG, Sozio SM, Linda Kao WH, Parekh RS, Segev DL: Age and sex disparities in discussions about kidney transplantation in adults undergoing dialysis. J Am Geriatr Soc 62(5):843-9, 2014.

Thameem F, Igo RP Jr, Freedman BI, Langefeld C, Hanson RL, Schelling JR, Elston RC, Duggirala R, Nicholas SB, Goddard KA, Divers J, Guo X, Ipp E, Kimmel PL, Meoni LA, Shah VO, Smith MW, Winkler CA, Zager PG, Knowler WC, Nelson RG, Pahl MV, Parekh RS, Kao WH, Rasooly RS, Adler SG, Abboud HE, Iyengar SK, Sedor JR, Family Investigation of Nephropathy and Diabetes Research Group: A genome-wide search for linkage of estimated glomerular filtration rate (eGFR) in the Family Investigation of Nephropathy and Diabetes (FIND). PLoS One 8(12):e81888, 2013.

Shihab HM, Meoni LA, Chu AY, Wang NY, Ford DE, Liang KY, Gallo JJ, Klag MJ: Body mass index and risk of incident hypertension over the life course: the Johns Hopkins Precursors Study. Circulation 126(25):2983-9, 2012.

Bostrom MA, Kao WH, Li M, Abboud HE, Adler SG, Iyengar SK, Kimmel PL, Hanson RL, Nicholas SB, Rasooly RS, Sedor JR, Coresh J, Kohn OF, Leehey DJ, Thornley-Brown D, Bottinger EP, Lipkowitz MS, Meoni LA, Klag MJ, Lu L, Hicks PJ, Langefeld CD, Parekh RS, Bowden DW, Freedman BI, Family Investigation of Nephropathy and Diabetes (FIND) Research Group: Genetic association and gene-gene interaction analyses in African American dialysis patients with nondiabetic nephropathy. American Journal of Kidney Diseases 59(2):210-21, 2012.

Gross AL, Rebok GW, Ford DE, Chu AY, Gallo JJ, Liang KY, Meoni LA, Shihab HM, Wang NY, Klag MJ: Alcohol consumption and domain-specific cognitive function in older adults: longitudinal data from the Johns Hopkins Precursors Study. Journals of Gerontology, Series B 66(1):39-47, 2011.

Igo RP Jr, Iyengar SK, Nicholas SB, Goddard KA, Langefeld CD, Hanson RL, Duggirala R, Divers J, Abboud H, Adler SG, Arar NH, Horvath A, Elston RC, Bowden DW, Guo X, Ipp E, Kao WH, Kimmel PL, Knowler WC, Meoni LA, Molineros J, Nelson RG, Pahl MV, Parekh RS, Rasooly RS, Schelling JR, Shah VO, Smith MW, Winkler CA, Zager PG, Sedor JR, Freedman BI: Genomewide linkage scan for diabetic renal failure and albuminuria: the FIND Study. American Journal of Nephrology 33(5):381-389, 2011.

Engelman M, Agree EM, Meoni LA, Klag MJ: Propositional density and cognitive function in later life: findings from the Precursors Study. Journals of Gerontology Series B 65(6):706-11, 2010.

Chu AY, Meoni LA, Wang NY, Liang KY, Ford DE, Klag MJ: Reliability of alcohol recall after 15 years and 23 years of follow-up in the Johns Hopkins Precursors Study. Journal of Studies on Alcohol and Drugs 71(1):143-9, 2010.

Malhotra A, Igo RP Jr, Thameem F, Kao WH, Abboud HE, Adler SG, Arar NH, Bowden DW, Duggirala R, Freedman BI, Goddard KA, Ipp E, Iyengar SK, Kimmel PL, Knowler WC, Kohn O, Leehey D, Meoni LA, Nelson RG, Nicholas SB, Parekh RS, Rich SS, Chen YD, Saad MF, Scavini M, Schelling JR, Sedor JR, Shah VO, Taylor KD, Thornley-Brown D, Zager PG, Horvath A, Hanson RL, Family Investigation of Nephropathy and Diabetes Research Group (includes Meoni L): Genome-wide linkage scans for type 2 diabetes mellitus in four ethnically diverse populations-significant evidence for linkage on chromosome 4q in African Americans: the family investigation of nephropathy and diabetes research group. Diabetes/Metabolism Research and Reviews 25(8):740-7, 2009.

Cheng CY, Kao WH, Patterson N, Tandon A, Haiman CA, Harris TB, Xing C, John EM, Ambrosone CB, Brancati FL, Coresh J, Press MF, Parekh RS, Klag MJ, Meoni LA, Hsueh WC, Fejerman L, Pawlikowska L, Freedman ML, Jandorf LH, Bandera EV, Ciupak GL, Nalls MA, Akylbekova EL, Orwoll ES, Leak TS, Miljkovic I, Li R, Ursin G, Bernstein L, Ardlie K, Taylor HA, Boerwinckle E, Zmuda JM, Henderson BE, Wilson JG, Reich D: Admixture mapping of 15,280 African Americans identifies obesity susceptibility Loci on chromosomes 5 and X. PLoS Genetics 5(5):e1000490, 2009.

 

 

 

Elizabeth Ogburn Description: C:\Users\margo\my_doc\My Web Sites\Publication\UP_AR~11.gif (go to top of document)

Ogburn EL, Vanderweele TJ: Bias attenuation results for nondifferentially mismeasured ordinal and coarsened confounders. Biometrika 100 (1): 241-248, 2013.

Cacioppo JT, Cacioppo S, Gonzaga GC, Ogburn EL, Vanderweele TJ: Marital satisfaction and break-ups differ across on-line and off-line meeting venues. Proc Natl Acad Sci 110(25):10135-40, 2013.

Ogburn EL, VanderWeele TJ: Analytic results on the bias due to nondifferential misclassification of a binary mediator. Am J Epidemiol 176(6):555-61, 2012.

VanderWeele TJ, Valeri L, Ogburn EL: The role of measurement error and misclassification in mediation analysis: mediation and measurement error. Epidemiology 23(4):561-4, 2012.

Ogburn EL, VanderWeele TJ: On the nondifferential misclassification of a binary confounder. Epidemiology 23(3):433-9, 2012.

VanderWeele TJ, Ogburn EL: Theorems, proofs, examples and rules in the practice of epidemiology. Epidemiology 23(3): 443-445, 2012.

VanderWeele TJ, Ogburn EL, Tchetgen Tchetgen EJ: Why and when "flawed" social network analyses still yield valid tests of no contagion. Statistics, Politics, and Policy 3(1):1-11. 2012.

 

Roger Peng  Description: C:\Users\margo\my_doc\My Web Sites\Publication\UP_AR~11.gif (go to top of document)

Kaji DA, Belli AJ, McCormack MC, Matsui EC, Williams DA, Paulin L, Putcha N, Peng RD, Diette GB, Breysse PN, Hansel NN: Indoor pollutant exposure is associated with heightened respiratory symptoms in atopic compared to non-atopic individuals with COPD. BMC Pulm Med 14(1):147, 2014.

Bobb JF, Peng RD, Bell ML, Dominici F: Heat-related mortality and adaptation to heat in the United States. Environ Health Perspect 122(8):811-6, 2014.

Keet CA, Shreffler WG, Peng RD, Matsui W, Matsui EC: Associations between serum folate and vitamin D levels and incident mouse sensitization in adults. J Allergy Clin Immunol 133(2):399-404, 2014.

Heaton MJ, Peng RD: Extending distributed lag models to higher degrees. Biostatistics 15(2):398-412, 2014.

Keet CA, Savage JH, Seopaul S, Peng RD, Wood RA, Matsui EC: Temporal trends and racial/ethnic disparity in self-reported pediatric food allergy in the United States. Ann Allergy Asthma Immunol 112(3):222-229.e3, 2014.

Bell ML, Ebisu K, Leaderer BP, Gent JF, Lee HJ, Koutrakis P, Wang Y, Dominici F, Peng RD: Associations of PM2.5 constituents and sources with hospital admissions: analysis of four counties in Connecticut and Massachusetts (USA) for persons ≥ 65 years of age. Environ Health Perspect 122(2):138-44, 2014.

Little FF, Delgado DM, Wexler PJ, Oppenheim FG, Mitchell P, Feldman JA, Walt DR, Peng RD, Matsui EC: Salivary inflammatory mediator profiling and correlation to clinical disease markers in asthma. PLoS One 9(1):e84449, 2014.

Matsui EC, Hansel NN, Aloe C, Schiltz AM, Peng RD, Rabinovitch N, Ong MJ, Williams DL, Breysse PN, Diette GB, Liu AH: Indoor pollutant exposures modify the effect of airborne endotoxin on asthma in urban children. Am J Respir Crit Care Med 188(10):1210-5, 2013.

Ahluwalia SK, Peng RD, Breysse PN, Diette GB, Curtin-Brosnan J, Aloe C, Matsui EC: Mouse allergen is the major allergen of public health relevance in Baltimore City. J Allergy Clin Immunol 132(4):830-835.e2, 2013.

Krall JR, Anderson GB, Dominici F, Bell ML, Peng RD: Short-term exposure to particulate matter constituents and mortality in a national study of U.S. urban communities. Environ Health Perspect 121(10):1148-1153, 2013.

Anderson GB, Bell ML, Peng RD: Methods to calculate the heat index as an exposure metric in environmental health research. Environ Health Perspect 121(10):1111-1119, 2013.

Bose S, Breysse PN, McCormack MC, Hansel NN, Rusher RR, Matsui E, Peng R, Curtin-Brosnan J, Diette GB: Outdoor exposure and vitamin D levels in urban children with asthma. Nutr J 12(1):81, 2013.

Peng RD, Samoli E, Pham L, Dominici F, Touloumi G, Ramsay T, Burnett RT, Krewski D, Le Tertre A, Cohen A, Atkinson RW, Anderson HR, Katsouyanni K, Samet JM: Acute effects of ambient ozone on mortality in Europe and North America: results from the APHENA study. Air Qual Atmos Health 6(2):445-453, 2013.

Hansel NN, McCormack MC, Belli AJ, Matsui EC, Peng RD, Aloe C, Paulin L, Williams DL, Diette GB, Breysse PN: In-home air pollution is linked to respiratory morbidity in former smokers with chronic obstructive pulmonary disease. Am J Respir Crit Care Med 187(10):1085-90, 2013.

Anderson GB, Dominici F, Wang Y, McCormack MC, Bell ML, Peng RD: Heat-related emergency hospitalizations for respiratory diseases in the Medicare population. Am J Respir Crit Care Med 187(10):1098-103, 2013.

Lin JH, Matsui W, Aloe C, Peng RD, Diette GB, Breysse PN, Matsui EC: Relationships between folate and inflammatory features of asthma. J Allergy Clin Immunol 131(3):918-20, 2013.

Lu KD, Breysse PN, Diette GB, Curtin-Brosnan J, Aloe C, Williams DL, Peng RD, McCormack MC, Matsui EC: Being overweight increases susceptibility to indoor pollutants among urban children with asthma. J Allergy Clin Immunol 131(4):1017-1023, 2013.

Bobb JF, Dominici F, Peng RD: Reduced hierarchical models with application to estimating health effects of simultaneous exposure to multiple pollutants. Applied Statistics 62(3):451-472, 2013.

Chen R, Peng RD, Meng X, Zhou Z, Chen B, Kan H: Seasonal variation in the acute effect of particulate air pollution on mortality in the China Air Pollution and Health Effects Study (CAPES). Sci Total Environ 450-451C:259-265, 2013.

Paulin LM, Williams DL, Oberweiser C, Diette GB, Breysse PN, McCormack MC, Matsui EC, Peng RD, Metts TA, Hansel NN: Indoor air quality in central Appalachia homes impacted by wood and coal use. J Environ Prot (Irvine, Calif) 4(1):67-71, 2013.

Keet CA, Matsui EC, Savage JH, Neuman-Sunshine DL, Skripak J, Peng RD, Wood RA: Potential mechanisms for the association between fall birth and food allergy. Allergy 67(6):775-82, 2012.

Heaton MJ, Peng RD: Flexible distributed lag models using random functions with application to estimating mortality displacement from heat-related deaths. J Agric Biol Environ Stat 17(3):313-331, 2012.

Anderson GB, Krall JR, Peng RD, Bell ML: Is the relation between ozone and mortality confounded by chemical components of particulate matter? Analysis of 7 components in 57 US communities. Am J Epidemiol 176(8):726-32, 2012.

Han I, Mihalic JN, Ramos-Bonilla JP, Rule AM, Polyak LM, Peng RD, Geyh AS, Breysse PN: Assessment of heterogeneity of metal composition of fine particulate matter collected from eight U.S. counties using principal component analysis. Journal of the Air & Waste Management Association 62(7):773-82, 2012.

Neuman-Sunshine DL, Eckman JA, Keet CA, Matsui EC, Peng RD, Lenehan PJ, Wood RA: The natural history of persistent peanut allergy. Annals of Allergy, Asthma & Immunology 108(5):326-331.e3, 2012.

Leek JT, Peng RD, Anderson RR: Personalized medicine: Keep a way open for tailored treatments. Nature 484(7394):318, 2012.

Bobb JF, Dominici F, Peng RD: A Bayesian model averaging approach for estimating the relative risk of mortality associated with heat waves in 105 U.S. cities. Biometrics 67(4):1605-16, 2011.

Chang HH, Peng RD, Dominici F: Estimating the acute health effects of coarse particulate matter accounting for exposure measurement error. Biostatistics 12(4):637-52, 2011.

Peng RD: Reproducible research in computational science. Science 334(6060):1226-7, 2011.

Peng RD, Paigen B, Eggleston PA, Hagberg KA, Krevans M, Curtin-Brosnan J, Benson C, Shreffler WG, Matsui EC: Both the variability and level of mouse allergen exposure influence the phenotype of the immune response in workers at a mouse facility. Journal of Allergy and Clinical Immunology 128(2):390-396, 2011.

Bell ML, Ebisu K, Peng RD: Community-level spatial heterogeneity of chemical constituent levels of fine particulates and implications for epidemiological research. Journal of Exposure Science and Environmental Epidemiology 21(4):372-84, 2011.

Hansel NN, Matsui EC, Rusher R, McCormack MC, Curtin-Brosnan J, Peng RD, Mazique D, Breysse PN, Diette GB: Predicting future asthma morbidity in preschool inner-city children.Journal of Asthma 48(8):797-803, 2011.

Keet CA, McCormack MC, Peng RD, Matsui EC: Age- and atopy-dependent effects of vitamin D on wheeze and asthma. Journal of Allergy and Clinical Immunology 128(2):414-416, 2011.

Peng RD, Bobb JF, Tebaldi C, McDaniel L, Bell ML, Dominici F: Toward a quantitative estimate of future heat wave mortality under global climate change. Environmental Health Perspectives 119(5):701-6, 2011.

McCormack MC, Breysse PN, Matsui EC, Hansel NN, Peng RD, Curtin-Brosnan J, Williams DL, Wills-Karp M, Diette GB, Center for Childhood Asthma in the Urban Environment: Indoor particulate matter increases asthma morbidity in children with non-atopic and atopic asthma. Annals of Allergy Asthma & Immunology 106(4):308-15, 2011.

Peng RD, Bell ML: Spatial misalignment in time series studies of air pollution and health data. Biostatistics 11(4):720-40, 2010.

Tankersley CG, Peng RD, Bedga D, Gabrielson K, Champion HC: Variation in echocardiographic and cardiac hemodynamic effects of PM and ozone inhalation exposure in strains related to Nppa and Npr1 gene knock-out mice. Inhalation Toxicology 22(8):695-707, 2010.

Dominici F, Peng RD, Barr CD, Bell ML: Protecting human health from air pollution: shifting from a single-pollutant to a multipollutant approach. Epidemiology 21(2):187-94, 2010.

Katsouyanni K, Samet JM, Anderson HR, Atkinson R, Le Tertre A, Medina S, Samoli E, Touloumi G, Burnett RT, Krewski D, Ramsay T, Dominici F, Peng RD, Schwartz J, Zanobetti A, HEI Health Review Committee: Air pollution and health: a European and North American approach (APHENA). Research Report (Health Effects Institute) 142:5-90, 2009.

Bell ML, Peng RD, Dominici F, Samet JM: Emergency hospital admissions for cardiovascular diseases and ambient levels of carbon monoxide: results for 126 United States urban counties, 1999-2005. Circulation 120(11):949-55, 2009.

Bell ML, Ebisu K, Peng RD, Dominici F: Adverse health effects of particulate air pollution: modification by air conditioning. Epidemiology 20(5):682-6, 2009.

Peng RD, Bell ML, Geyh AS, McDermott A, Zeger SL, Samet JM, Dominici F: Emergency admissions for cardiovascular and respiratory diseases and the chemical composition of fine particle air pollution. Environmental Health Perspectives 117(6):957-63, 2009.

Bell ML, Ebisu K, Peng RD, Samet JM, Dominici F: Hospital admissions and chemical composition of fine particle air pollution. American Journal of Respiratory and Critical Care Medicine 179(12):1115-20, 2009.

Peng RD: Reproducible research and Biostatistics. Biostatistics 10(3):405-8, 2009.

Welty LJ, Peng RD, Zeger SL, Dominici F: Bayesian distributed lag models: estimating effects of particulate matter air pollution on daily mortality. Biometrics 65(1):282-91, 2009.

Eckel SP, Peng RD: Interacting with local and remote data repositories using the stashR package. Computational Statistics 24(2):247-254, 2009.

Peng RD, Eckel SP: Distributed reproducible research using cached computations. Comput Sci Eng 11(1):28-34, 2009.

 

 

Charles Rohde  Description: C:\Users\margo\my_doc\My Web Sites\Publication\UP_AR~11.gif(go to top of document)

Bower KM, Thorpe RJ Jr, Rohde C, Gaskin DJ: The intersection of neighborhood racial segregation, poverty, and urbanicity and its impact on food store availability in the United States. Prev Med 58:33-9, 2014.

George S, Kadam SD, Irving ND, Markowitz GJ, Raja S, Kwan A, Tu Y, Chen H, Rohde C, Smith DR, Comi AM: Impact of trichostatin A and sodium valproate treatment on post-stroke neurogenesis and behavioral outcomes in immature mice. Front Cell Neurosci 7:123, 2013.

Wasserman EE, Pillion JP, Duggan A, Nelson K, Rohde C, Seaberg EC, Talor MV, Yolken RH, Rose NR: Childhood IQ, hearing loss, and maternal thyroid autoimmunity in the Baltimore Collaborative Perinatal Project. Pediatr Res 72(5):525-30, 2012.

Kaufmann WE, Tierney E, Rohde CA, Suarez-Pedraza MC, Clarke MA, Salorio CF, Bibat G, Bukelis I, Naram D, Lanham DC, Naidu S: Social impairments in Rett syndrome: characteristics and relationship with clinical severity. J Intellect Disabil Res 56(3):233-47, 2012.

Shapiro JR, Bibat G, Hiremath G, Blue ME, Hundalani S, Yablonski T, Kantipuly A, Rohde C, Johnston M, Naidu S: Bone mass in Rett syndrome: association with clinical parameters and MECP2 mutations. Pediatric Research 68(5):446-51, 2010.

Strug LJ, Hodge SE, Chiang T, Pal DK, Corey PN, Rohde C: A pure likelihood approach to the analysis of genetic association data: an alternative to Bayesian and frequentist analysis. European Journal of Human Genetics 18(8):933-41, 2010.

Vyas A, Li Z, Aspalter M, Feiner J, Hoke A, Zhou C, O'Daly A, Abdullah M, Rohde C, Brushart TM: An in vitro model of adult mammalian nerve repair. Experimental Neurology 223(1):112-8, 2010.

 

Michael Rosenblum  Description: C:\Users\margo\my_doc\My Web Sites\Publication\UP_AR~11.gif (go to top of document)

Rosenblum M: Confidence intervals for the selected population in randomized trials that adapt the population enrolled. Biom J 55(3):322-40, 2013.

Rosenblum M, van der Laan MJ: Optimizing randomized trial designs to distinguish which subpopulations benefit from treatment. Biometrika 98 (4): 845-860, 2011.

Shiboski S, Rosenblum M, Jewell NP: The impact of secondary condom interventions on the interpretation of results from HIV prevention trials. Statistical Communications in Infectious Diseases 2(1):Article 2, 2010.

Rosenblum M, van der Laan MJ: Simple, efficient estimators of treatment effects in randomized trials using generalized linear models to leverage baseline variables. International Journal of Biostatistics 6(1):Article 13, 2010.

Rosenblum M, van der Laan MJ: Targeted maximum likelihood estimation of the parameter of a marginal structural model. International Journal of Biostatistics 6(2):Article 19, 2010.

Rosenblum M, van der Laan MJ: Using regression models to analyze randomized trials: asymptotically valid hypothesis tests despite incorrectly specified models. Biometrics 65(3):937-45, 2009.

Rosenblum M, Deeks SG, van der Laan M, Bangsberg DR: The risk of virologic failure decreases with duration of HIV suppression, at greater than 50% adherence to antiretroviral therapy. PLoS One 4(9):e7196, 2009.

Rosenblum M, Jewell NP, van der Laan MJ, Shiboski S, van der Straten A, Padian N: Analyzing direct effects in randomized trials with secondary interventions: an application to HIV prevention trials. Journal of the Royal Statistical Society A 172(2):443-465, 2009.

Rosenblum M, van der Laan MJ: Confidence intervals for the population mean tailored to small sample sizes, with applications to survey sampling. International Journal of Biostatistics 5(1):Article 4, 2009.

 

 

Ingo Ruczinski  Description: C:\Users\margo\my_doc\My Web Sites\Publication\UP_AR~11.gif(go to top of document)


Schwender H, Li Q, Neumann C, Taub MA, Younkin SG, Berger P, Scharpf RB, Beaty TH, Ruczinski I: Detecting disease variants in case-parent trio studies using the Bioconductor software package trio. Genet Epidemiol 38(6):516-522, 2014.

Bureau A, Younkin SG, Parker MM, Bailey-Wilson JE, Marazita ML, Murray JC, Mangold E, Albacha-Hejazi H, Beaty TH, Ruczinski I: Inferring rare disease risk variants based on exact probabilities of sharing by multiple affected relatives. Bioinformatics 30(15):2189-96, 2014.

Bureau A, Parker MM, Ruczinski I, Taub MA, Marazita ML, Murray JC, Mangold E, Noethen MM, Ludwig KU, Hetmanski JB, Bailey-Wilson JE, Cropp CD, Li Q, Szymczak S, Albacha-Hejazi H, Alqosayer K, Field LL, Wu-Chou YH, Doheny KF, Ling H, Scott AF, Beaty TH: Whole exome sequencing of distant relatives in multiplex families implicates rare variants in candidate genes for oral clefts. Genetics 197(3):1039-1044, 2014.

Scharpf RB, Mireles L, Yang Q, Kottgen A, Ruczinski I, Susztak K, Halper-Stromberg E, Tin A, Cristiano S, Chakravarti A, Boerwinkle E, Fox CS, Coresh J, Kao WH: Copy number polymorphisms near SLC2A9 are associated with serum uric acid concentrations. BMC Genet 15(1):81, 2014.

Tang W, Kowgier M, Loth DW, Soler Artigas M, Joubert BR, Hodge E, Gharib SA, Smith AV, Ruczinski I, et al: Large-scale genome-wide association studies and meta-analyses of longitudinal change in adult lung function. PLoS One 9(7):e100776, 2014.

Gordon AS, Tabor HK, Johnson AD, Snively BM, Assimes TL, Auer PL, Ioannidis JP, Peters U, Robinson JG, Sucheston LE, Wang D, Sotoodehnia N, Rotter JI, Psaty BM, Jackson RD, Herrington DM, O'Donnell CJ, Reiner AP, Rich SS, Rieder MJ, Bamshad MJ, Nickerson DA, NHLBI GO Exome Sequencing Project (includes Ruczinski I): Quantifying rare, deleterious variation in 12 human cytochrome P450 drug-metabolism genes in a large-scale exome dataset. Hum Mol Genet 23(8):1957-63, 2014.

Younkin SG, Scharpf RB, Schwender H, Parker MM, Scott AF, Marazita ML, Beaty TH, Ruczinski I: A genome-wide study of de novo deletions identifies a candidate locus for non-syndromic isolated cleft lip/palate risk. BMC Genet 15(1):24, 2014.

Lange LA, Hu Y, Zhang H, Xue C, ..., NHLBI Grand Opportunity Exome Sequencing Project (includes Ruczinski I): Whole-exome sequencing identifies rare and low-frequency coding variants associated with LDL cholesterol. Am J Hum Genet 94(2):233-45, 2014.

Wu T, Schwender H, Ruczinski I, Murray JC, Marazita ML, Munger RG, Hetmanski JB, Parker MM, Wang P, Murray T, Taub M, Li S, Redett RJ, Fallin MD, Liang KY, Wu-Chou YH, Chong SS, Yeow V, Ye X, Wang H, Huang S, Jabs EW, Shi B, Wilcox AJ, Jee SH, Scott AF, Beaty TH: Evidence of gene-environment interaction for two genes on chromosome 4 and environmental tobacco smoke in controlling the risk of nonsyndromic cleft palate. PLoS One 9(2):e88088, 2014.

Rosenthal EA, Ranchalis J, Crosslin DR, Burt A, Brunzell JD, Motulsky AG, Nickerson DA, NHLBI GO Exome Sequencing Project (includes Ruczinski I), Wijsman EM, Jarvik GP: Joint linkage and association analysis with exome sequence data implicates SLC25A40 in hypertriglyceridemia. Am J Hum Genet 93(6):1035-45, 2013.

Taub MA, Schwender HR, Younkin SG, Louis TA, Ruczinski I: On multi-marker tests for association in case-control studies. Front Genet 4:252, 2013.

Guo DC, Regalado E, Casteel DE, Santos-Cortez RL, Gong L, Kim JJ, Dyack S, Horne SG, Chang G, Jondeau G, Boileau C, Coselli JS, Li Z, Leal SM, Shendure J, Rieder MJ, Bamshad MJ, Nickerson DA; GenTAC Registry Consortium, National Heart, Lung, and Blood Institute Grand Opportunity Exome Sequencing Project (includes Ruczinski I), Kim C, Milewicz DM: Recurrent gain-of-function mutation in PRKG1 causes thoracic aortic aneurysms and acute aortic dissections. Am J Hum Genet 93(2):398-404, 2013.

Omoumi A, Wang Z, Yeow V, Wu-Chou YH, Chen PK, Ruczinski I, Cheng J, Cheah FS, Lee CG, Beaty TH, Chong SS: Fetal polymorphisms at the ABCB1-transporter gene locus are associated with susceptibility to non-syndromic oral cleft malformations. Eur J Hum Genet 21(12):1436-41, 2013.

Stephens SH, Hartz SM, Hoft NR,..., Ruczinski I, et al: Distinct loci in the CHRNA5/CHRNA3/CHRNB4 gene cluster are associated with onset of regular smoking. Genet Epidemiol 37(8):846-59, 2013.

May DH, Navarro SL, Ruczinski I, Hogan J, Ogata Y, Schwarz Y, Levy L, Holzman T, McIntosh MW, Lampe JW: Metabolomic profiling of urine: response to a randomised, controlled feeding study of select fruits and vegetables, and application to an observational study. Br J Nutr 110(10):1760-70, 2013.

Cole RN, Ruczinski I, Schulze K, Christian P, Herbrich S, Wu L, Devine LR, O'Meally RN, Shrestha S, Boronina TN, Yager JD, Groopman J, West KP Jr: The plasma proteome identifies expected and novel proteins correlated with micronutrient status in undernourished Nepalese children. J Nutr 143(10):1540-8, 2013.

Johnsen JM, Auer PL, Morrison AC, Jiao S, Wei P, Haessler J, Fox K, McGee SR, Smith JD, Carlson CS, Smith N, Boerwinkle E, Kooperberg C, Nickerson DA, Rich SS, Green D, Peters U, Cushman M, Reiner AP, NHLBI Exome Sequencing Project (includes Ruczinski I): Common and rare von Willebrand factor (VWF) coding variants, VWF levels, and factor VIII levels in African Americans: the NHLBI Exome Sequencing Project. Blood 122(4):590-7, 2013.

O'Connor TD, Kiezun A, Bamshad M, Rich SS, Smith JD, Turner E, NHLBIGO Exome Sequencing Project (includes Ruczinski I), ESP Population Genetics, Statistical Analysis Working Group, Leal SM, Akey JM: Fine-scale patterns of population stratification confound rare variant association tests. PLoS One 8(7):e65834, 2013.

Beaty TH, Taub MA, Scott AF, Murray JC, Marazita ML, Schwender H, Parker MM, Hetmanski JB, Balakrishnan P, Mansilla MA, Mangold E, Ludwig KU, Noethen MM, Rubini M, Elcioglu N, Ruczinski I: Confirming genes influencing risk to cleft lip with/without cleft palate in a case-parent trio study. Hum Genet 132(7):771-81, 2013.

Norton N, Li D, Rampersaud E, Morales A, Martin ER, Zuchner S, Guo S, Gonzalez M, Hedges DJ, Robertson PD, Krumm N, Nickerson DA, Hershberger RE, National Heart, Lung, and Blood Institute GO Exome Sequencing Project and the Exome Sequencing Project Family Studies Project Team (includes Ruczinski I): Exome sequencing and genome-wide linkage analysis in 17 families illustrate the complex contribution of TTN truncating variants to dilated cardiomyopathy. Circ Cardiovasc Genet 6(2):144-53, 2013.

Vergara C, Murray T, Rafaels N, Lewis R, Campbell M, Foster C, Gao L, Faruque M, Oliveira RR, Carvalho E, Araujo MI, Cruz AA, Watson H, Mercado D, Knight-Madden J, Ruczinski I, Dunston G, Ford J, Caraballo L, Beaty TH, Mathias RA, Barnes KC: African ancestry is a risk factor for asthma and high total IgE levels in African admixed population. Genet Epidemiol 37(4):393-401, 2013.

Li Q, Schwender H, Louis TA, Fallin MD, Ruczinski I: Efficient simulation of epistatic interactions in case-parent trio. Hum Hered 75(1):12-22, 2013.

Patel PJ, Beaty TH, Ruczinski I, Murray JC, Marazita ML, Munger RG, Hetmanski JB, Wu T, Murray T, Rose M, Redett RJ, Jin SC, Lie RT, Wu-Chou YH, Wang H, Ye X, Yeow V, Chong S, Jee SH, Shi B, Scott AF: X-linked markers in the Duchenne muscular dystrophy gene associated with oral clefts. Eur J Oral Sci 121(2):63-68, 2013.

Fu W, O'Connor TD, Jun G, Kang HM, Abecasis G, Leal SM, Gabriel S, Altshuler D, Shendure J, Nickerson DA, Bamshad MJ, NHLBI Exome Sequencing Project (includes Ruczinski I), Akey JM: Analysis of 6,515 exomes reveals the recent origin of most human protein-coding variants. Nature 493(7431):216-20, 2013.

Herbrich SM, Cole RN, West KP Jr, Schulze K, Yager JD, Groopman JD, Christian P, Wu L, O'Meally RN, May DH, McIntosh MW, Ruczinski I: Statistical inference from multiple iTRAQ experiments without using common reference standards. J Proteome Res 12(2):594-604, 2013.

Hansel NN, Ruczinski I, Rafaels N, Sin DD, Daley D, Malinina A, Huang L, Sandford A, Murray T, Kim Y, Vergara C, Heckbert SR, Psaty BM, Li G, Elliott WM, Aminuddin F, Dupuis J, O'Connor GT, Doheny K, Scott AF, Boezen HM, Postma DS, Smolonska J, Zanen P, Mohamed Hoesein FA, de Koning HJ, Crystal RG, Tanaka T, Ferrucci L, Silverman E, Wan E, Vestbo J, Lomas DA, Connett J, Wise RA, Neptune ER, Mathias RA, Paré PD, Beaty TH, Barnes KC: Genome-wide study identifies two loci associated with lung function decline in mild to moderate COPD. Hum Genet 132(1):79-90, 2013.

Alberg AJ, Jorgensen TJ, Ruczinski I, Wheless L, Shugart YY, Berthier-Schaad Y, Kessing B, Hoffman-Bolton J, Helzlsouer KJ, Kao WH, Francis L, Alani RM, Smith MW, Strickland PT: DNA repair gene variants in relation to overall cancer risk: a population-based study. Carcinogenesis 34(1):86-92, 2013.

Scharpf RB, Beaty TH, Schwender H, Younkin SG, Scott AF, Ruczinski I: Fast detection of de novo copy number variants from SNP arrays for case-parent trios. BMC Bioinformatics 13(1):330, 2012.

Mathias RA, Fu W, Akey JM, Ainsworth HC, Torgerson DG, Ruczinski I, Sergeant S, Barnes KC, Chilton FH: Adaptive evolution of the FADS gene cluster within Africa. PLoS One 7(9):e44926, 2012.

Schwender H, Taub MA, Beaty TH, Marazita ML, Ruczinski I: Rapid testing of SNPs and gene-environment interactions in case-parent trio data based on exact analytic parameter estimation. Biometrics 68(3):766-73, 2012.

Jorgensen TJ, Ruczinski I, Yao Shugart Y, Wheless L, Berthier Schaad Y, Kessing B, Hoffman-Bolton J, Helzlsouer KJ, Kao WH, Francis L, Alani RM, Strickland PT, Smith MW, Alberg AJ: A population-based study of hedgehog pathway gene variants in relation to the dual risk of basal cell carcinoma plus another cancer. Cancer Epidemiology 36(5):e288-93, 2012.

Emond MJ, Louie T, ..., National Heart, Lung, and Blood Institute (NHLBI) GO Exome Sequencing Project (includes Ruczinski I), et al: Exome sequencing of extreme phenotypes identifies DCTN4 as a modifier of chronic Pseudomonas aeruginosa infection in cystic fibrosis. Nature Genetics 44(8):886-9, 2012.

Boileau C, Guo DC, ..., National Heart, Lung, and Blood Institute (NHLBI) Go Exome Sequencing Project (includes Ruczinski I), et al: TGFB2 mutations cause familial thoracic aortic aneurysms and dissections associated with mild systemic features of Marfan syndrome. Nature Genetics 44(8):916-21, 2012.

Ruczinski I, Jorgensen TJ, Shugart YY, Schaad YB, Kessing B, Hoffman-Bolton J, Helzlsouer KJ, Kao WH, Wheless L, Francis L, Alani RM, Strickland PT, Smith MW, Alberg AJ: A population-based study of DNA repair gene variants in relation to non-melanoma skin cancer as a marker of a cancer-prone phenotype. Carcinogenesis 33(9):1692-8, 2012.

Ludwig KU, Mangold E, ..., Ruczinski I, et al: Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci. Nature Genetics 968-71, 2012.

Chen Q, Wang H, Hetmanski JB, Zhang T, Ruczinski I, Schwender H, Liang KY, Fallin MD, Redett RJ, Raymond GV, Wu Chou YH, Chen PK, Yeow V, Chong SS, Cheah FS, Jabs EW, Scott AF, Beaty TH: BMP4 was associated with NSCL/P in an Asian population. PLoS One 7(4):e35347, 2012.

Zhang TX, Beaty TH, Ruczinski I: Candidate pathway based analysis for cleft lip with or without cleft palate. Statistical Applications in Genetics & Molecular Biology 11(2), 2012.

Hartz SM, Short SE, Saccone NL,..., Ruczinski I, et al: Increased genetic vulnerability to smoking at CHRNA5 in early-onset smokers. Archives of General Psychiatry 69(8):854-60, 2012.

Shi M, Murray JC, Marazita ML, Munger RG, Ruczinski I, Hetmanski JB, Wu T, Murray T, Redett RJ, Wilcox AJ, Lie RT, Jabs EW, Wu-Chou YH, Chen PK, Wang H, Ye X, Yeow V, Chong SS, Shi B, Christensen K, Scott AF, Patel P, Cheah F, Beaty TH: Genome wide study of maternal and parent-of-origin effects on the etiology of orofacial clefts. American Journal of Medical Genetics Part A 158A(4):784-94, 2012.

Laurie CC, Laurie CA, Rice K, Doheny KF, Zelnick LR, McHugh CP, Ling H, Hetrick KN, Pugh EW, Amos C, Wei Q, Wang LE, Lee JE, Barnes KC, Hansel NN, Mathias R, Daley D, Beaty TH, Scott AF, Ruczinski I, Scharpf RB, et al: Detectable clonal mosaicism from birth to old age and its relationship to cancer. Nature Genetics 44(6):642-50, 2012.

Murray T, Taub MA, Ruczinski I, Scott AF, Hetmanski JB, Schwender H, Patel P, Zhang TX, Munger RG, Wilcox AJ, Ye X, Wang H, Wu T, Wu-Chou YH, Shi B, Jee SH, Chong S, Yeow V, Murray JC, Marazita ML, Beaty TH: Examining markers in 8q24 to explain differences in evidence for association with cleft lip with/without cleft palate between Asians and Europeans. Genetic Epidemiology 36(4):392-9, 2012.

Laurie CC, Laurie CA, Rice K, ..., Ruczinski I, et al: Detectable clonal mosaicism from birth to old age and its relationship to cancer. Nature Genetics 44(6):642-50, 2012.

Saxena R, Elbers CC, Guo Y, Peter I, Gaunt TR, ..., Ruczinski I, et al: Large-scale gene-centric meta-analysis across 39 studies identifies type 2 diabetes loci. American Journal of Human Genetics 90(3):410-25, 2012.

Wheless L, Kistner-Griffin E, Jorgensen TJ, Ruczinski I, Berthier-Schaad Y, Kessing B, Hoffman-Bolton J, Francis L, Shugart YY, Strickland PT, Kao WH, Alani RM, Smith MW, Alberg AJ: A community-based study of nucleotide excision repair polymorphisms in relation to the risk of non-melanoma skin cancer. Journal of Investigative Dermatology 132(5):1354-62, 2012.

Wu T, Fallin MD, Shi M, Ruczinski I, Liang KY, Hetmanski JB, Wang H, Ingersoll RG, Huang S, Ye X, Wu-Chou YH, Chen PK, Jabs EW, Shi B, Redett R, Scott AF, Murray JC, Marazita ML, Munger RG, Beaty TH: Evidence of gene-environment interaction for the RUNX2 gene and environmental tobacco smoke in controlling the risk of cleft lip with/without cleft palate. Birth Defects Research Part A, Clinical & Molecular Teratology 94(2):76-83, 2012.

Taub MA, Schwender H, Beaty TH, Louis TA, Ruczinski I: Incorporating genotype uncertainties into the genotypic TDT for main effects and gene-environment interactions. Genetic Epidemiology 36(3):244-52, 2012.

Chen Q, Wang H, Hetmanski JB, Zhang T, Ruczinski I, Schwender H, Liang KY, Fallin MD, Redett RJ, Raymond GV, Wu Chou YH, Chen PK, Yeow V, Chong SS, Cheah FS, Jabs EW, Scott AF, Beaty TH: BMP4 was associated with NSCL/P in an Asian population. PLoS One 7(4):e35347, 2012.

Wang H, Hetmanski JB, Ruczinski I, Liang KY, Fallin MD, Redett RJ, Raymond GV, Chou YH, Chen PK, Yeow V, Chong SS, Cheah FSh, Jabs EW, Scott AF, Beaty TH: ROR2 gene is associated with risk of non-syndromic cleft palate in an Asian population. Chinese Medical Journal 125(3):476-80, 2012.

Scholl PF, Cole RN, Ruczinski I, Gucek M, Diez R, Rennie A, Nathasingh C, Schulze K, Christian P, Yager JD, Groopman JD, West KP Jr: Maternal serum proteome changes between the first and third trimester of pregnancy in rural southern Nepal. Placenta 33(5):424-32, 2012.

Scharpf RB, Irizarry RA, Ritchie ME, Carvalho B, Ruczinski I: Using the R package crlmm for genotyping and copy number estimation. Journal of Statistical Software 40(12):1-32, 2011.

Beaty TH, Ruczinski I, Murray JC, Marazita ML, Munger RG, Hetmanski JB, Murray T, Redett RJ, Fallin MD, Liang KY, Wu T, Patel PJ, Jin SC, Zhang TX, Schwender H, Wu-Chou YH, Chen PK, Chong SS, Cheah F, Yeow V, Ye X, Wang H, Huang S, Jabs EW, Shi B, Wilcox AJ, Lie RT, Jee SH, Christensen K, Doheny KF, Pugh EW, Ling H, Scott AF: Evidence for gene-environment interaction in a genome wide study of nonsyndromic cleft palate. Genetic Epidemiology 35(6):469-78, 2011.

Wegmann D, Kessner DE, Veeramah KR, Mathias RA, Nicolae DL, Yanek LR, Sun YV, Torgerson DG, Rafaels N, Mosley T, Becker LC, Ruczinski I, Beaty TH, Kardia SL, Meyers DA, Barnes KC, Becker DM, Freimer NB, Novembre J: Recombination rates in admixed individuals identified by ancestry-based inference. Nature Genetics 43(9):847-53, 2011.

Torgerson DG, Ampleford EJ, ..., Ruczinski I, et al: Meta-analysis of genome-wide association studies of asthma in ethnically diverse North American populations. Nature Genetics 43(9):887-92, 2011.

Bhatia G, Patterson N, Pasaniuc B, Zaitlen N, Genovese G, Pollack S, Mallick S, Myers S, Tandon A, Spencer C, Palmer CD, Adeyemo AA, Akylbekova EL, Cupples LA, Divers J, Fornage M, Kao WH, Lange L, Li M, Musani S, Mychaleckyj JC, Ogunniyi A, Papanicolaou G, Rotimi CN, Rotter JI, Ruczinski I, Salako B, Siscovick DS, Tayo BO, Yang Q, McCarroll S, Sabeti P, Lettre G, De Jager P, Hirschhorn J, Zhu X, Cooper R, Reich D, Wilson JG, Price AL: : Genome-wide comparison of African-ancestry populations from CARe and other cohorts reveals signals of natural selection. American Journal of Human Genetics 89(3):368-81, 2011.

Mathias RA, Sergeant S, Ruczinski I, Torgerson DG, Hugenschmidt CE, Kubala M, Vaidya D, Suktitipat B, Ziegler JT, Ivester P, Case D, Yanek LR, Freedman BI, Rudock ME, Barnes KC, Langefeld CD, Becker LC, Bowden DW, Becker DM, Chilton FH: The impact of FADS genetic variants on ω6 polyunsaturated fatty acid metabolism in African America. BMC Genetics 12:50, 2011.

Pasaniuc B, Zaitlen N, Lettre G, Chen GK, Tandon A, Kao WH, Ruczinski I, Fornage M, Siscovick DS, Zhu X, Larkin E, Lange LA, Cupples LA, Yang Q, Akylbekova EL, Musani SK, Divers J, Mychaleckyj J, Li M, Papanicolaou GJ, Millikan RC, Ambrosone CB, John EM, Bernstein L, Zheng W, Hu JJ, Ziegler RG, Nyante SJ, Bandera EV, Ingles SA, Press MF, Chanock SJ, Deming SL, Rodriguez-Gil JL, Palmer CD, Buxbaum S, Ekunwe L, Hirschhorn JN, Henderson BE, Myers S, Haiman CA, Reich D, Patterson N, Wilson JG, Price AL: Enhanced statistical tests for GWAS in admixed populations: assessment using African Americans from CARe and a breast cancer consortium. PLoS Genetics 7(4):e1001371, 2011.

Kral BG, Mathias RA, Suktitipat B, Ruczinski I, Vaidya D, Yanek LR, Quyyumi AA, Patel RS, Zafari AM, Vaccarino V, Hauser ER, Kraus WE, Becker LC, Becker DM: A common variant in the CDKN2B gene on chromosome 9p21 protects against coronary artery disease in Americans of African ancestry. Journal of Human Genetics 56(3):224-9, 2011.

Halper-Stromberg E, Frelin L, Ruczinski I, Scharpf R, Jie C, Carvalho B, Hao H, Hetrick K, Jedlicka A, Dziedzic A, Doheny K, Scott AF, Baylin S, Pevsner J, Spencer F, Irizarry RA: Performance assessment of copy number microarray platforms using a spike-in experiment. Bioinformatics 27(8):1052-1060, 2011.

Schwender H, Bowers K, Fallin MD, Ruczinski I: Importance measures for epistatic interactions in case-parent trios. Annals of Human Genetics 75(1):122-32, 2011.

Schwender H, Ruczinski I, Ickstadt K: Testing SNPs and sets of SNPs for importance in association studies. Biostatistics 12(1):18-32, 2011.

Scharpf RB, Ruczinski I, Carvalho B, Doan B, Chakravarti A, Irizarry RA: A multilevel model to address batch effects in copy number estimation using SNP arrays. Biostatistics 12(1):33-50, 2011.

Lam TK, Ruczinski I, Helzlsouer KJ, Shugart YY, Caulfield LE, Alberg AJ: Cruciferous vegetable intake and lung cancer risk: a nested case-control study matched on cigarette smoking. Cancer Epidemiology, Biomarkers & Prevention 19(10):2534-40, 2010.

Hunninghake GM, Soto-Quiros ME, Avila L, Kim HP, Lasky-Su J, Rafaels N, Ruczinski I, Beaty TH, Mathias RA, Barnes KC, Wilk JB, O'Connor GT, Gauderman WJ, Vora H, Baurley JW, Gilliland F, Liang C, Sylvia JS, Klanderman BJ, Sharma SS, Himes BE, Bossley CJ, Israel E, Raby BA, Bush A, Choi AM, Weiss ST, Celedon JC: TSLP polymorphisms are associated with asthma in a sex-specific fashion. Allergy 65(12):1566-75, 2010.

Assimes TL, Holm H, Kathiresan S, Reilly MP, Thorleifsson G, Voight BF, Erdmann J, Willenborg C, Vaidya D, Xie C, Patterson CC, Morgan TM, Burnett MS, Li M, Hlatky MA, Knowles JW, Thompson JR, Absher D, Iribarren C, Go A, Fortmann SP, Sidney S, Risch N, Tang H, Myers RM, Berger K, Stoll M, Shah SH, Thorgeirsson G, Andersen K, Havulinna AS, Herrera JE, Faraday N, Kim Y, Kral BG, Mathias RA, Ruczinski I, et al: Lack of association between the Trp719Arg polymorphism in kinesin-like protein-6 and coronary artery disease in 19 case-control studies. Journal of the American College of Cardiology 56(19):1552-63, 2010.

Scharpf RB, Iacobuzio-Donahue CA, Cope L, Ruczinski I, Garrett-Mayer E, Lakkur S, Campagna D, Parmigiani G: Cross-platform comparison of two pancreatic cancer phenotypes. Cancer Informatics 9:257-264, 2010.

Kottgen A, Glazer NL, Dehghan A, Hwang SJ, Katz R, Li M, Yang Q, Gudnason V, Launer LJ, Harris TB, Smith AV, Arking DE, Astor BC, Boerwinkle E, Ehret GB, Ruczinski I, Scharpf RB, Chen YD, de Boer IH, Haritunians T, Lumley T, Sarnak M, Siscovick D, Benjamin EJ, Levy D, Upadhyay A, Aulchenko YS, Hofman A, Rivadeneira F, Uitterlinden AG, van Duijn CM, Chasman DI, Pare G, Ridker PM, Kao WH, Witteman JC, Coresh J, Shlipak MG, Fox CS: Multiple loci associated with indices of renal function and chronic kidney disease. Nature Genetics 41(6):712-7, 2009.

Schwender H, Ruczinski I: Logic regression and its extensions. Advances in Genetics 72:25-45, 2010.

Wu T, Liang KY, Hetmanski JB, Ruczinski I, Fallin MD, Ingersoll RG, Wang H, Huang S, Ye X, Wu-Chou YH, Chen PK, Jabs EW, Shi B, Redett R, Scott AF, Beaty TH: Evidence of gene-environment interaction for the IRF6 gene and maternal multivitamin supplementation in controlling the risk of cleft lip with/without cleft palate. Human Genetics 128(4):401-10, 2010.

Murray T, Beaty TH, Mathias RA, Rafaels N, Grant AV, Faruque MU, Watson HR, Ruczinski I, Dunston GM, Barnes KC: African and non-African admixture components in African Americans and an African Caribbean population. Genetic Epidemiology 34(6):561-8, 2010.

Li Q, Fallin MD, Louis TA, Lasseter VK, McGrath JA, Avramopoulos D, Wolyniec PS, Valle D, Liang KY, Pulver AE, Ruczinski I: Detection of SNP-SNP interactions in trios of parents with schizophrenic children. Genetic Epidemiology 34(5):396-406, 2010.

Mathias RA, Kim Y, Sung H, Yanek LR, Mantese VJ, Hererra-Galeano E, Ruczinski I, Wilson AF, Faraday N, Becker LC, Becker DM: A combined genome-wide linkage and association approach to find susceptibility loci for platelet function phenotypes in European American and African American families with coronary artery disease. BMC Medical Genomics 3(1):22, 2010.

Beaty TH, Murray JC, Marazita ML, Munger RG, Ruczinski I, Hetmanski JB, Liang KY, Wu T, Murray T, Fallin MD, Redett RA, Raymond G, Schwender H, Jin SC, Cooper ME, Dunnwald M, Mansilla MA, Leslie E, Bullard S, Lidral AC, Moreno LM, Menezes R, Vieira AR, Petrin A, Wilcox AJ, Lie RT, Jabs EW, Wu-Chou YH, Chen PK, Wang H, Ye X, Huang S, Yeow V, Chong SS, Jee SH, Shi B, Christensen K, Melbye M, Doheny KF, Pugh EW, Ling H, Castilla EE, Czeizel AE, Ma L, Field LL, Brody L, Pangilinan F, Mills JL, Molloy AM, Kirke PN, Scott JM, Arcos-Burgos M, Scott AF: A genome-wide association study of cleft lip with and without cleft palate identifies risk variants near MAFB and ABCA4. Nature Genetics 42(6):525-9, 2010.

Mathias RA, Grant AV, Rafaels N, Hand T, Gao L, Vergara C, Tsai YJ, Yang M, Campbell M, Foster C, Gao P, Togias A, Hansel NN, Diette G, Adkinson NF, Liu MC, Faruque M, Dunston GM, Watson HR, Bracken MB, Hoh J, Maul P, Maul T, Jedlicka AE, Murray T, Hetmanski JB, Ashworth R, Ongaco CM, Hetrick KN, Doheny KF, Pugh EW, Rotimi CN, Ford J, Eng C, Burchard EG, Sleiman PM, Hakonarson H, Forno E, Raby BA, Weiss ST, Scott AF, Kabesch M, Liang L, Abecasis G, Moffatt MF, Cookson WO, Ruczinski I, Beaty TH, Barnes KC: A genome-wide association study on African-ancestry populations for asthma. Journal of Allergy and Clinical Immunology 125(2):336-346, 2010.

Louis TA, Ruczinski I: Efficient evaluation of ranking procedures when the number of units is large, with application to SNP identification. Biometrical Journal 52(1):34-49, 2010.

Sleiman PM, Flory J, Imielinski M, Bradfield JP, Annaiah K, Willis-Owen SA, Wang K, Rafaels NM, Michel S, Bonnelykke K, Zhang H, Kim CE, Frackelton EC, Glessner JT, Hou C, Otieno FG, Santa E, Thomas K, Smith RM, Glaberson WR, Garris M, Chiavacci RM, Beaty TH, Ruczinski I, Orange JM, Allen J, Spergel JM, Grundmeier R, Mathias RA, Christie JD, von Mutius E, Cookson WO, Kabesch M, Moffatt MF, Grunstein MM, Barnes KC, Devoto M, Magnusson M, Li H, Grant SF, Bisgaard H, Hakonarson H: Variants of DENND1B associated with asthma in children. New England Journal of Medicine 362(1):36-44, 2010.

Scharpf RB, Ruczinski I: R classes and methods for SNP array data. Methods in Molecular Biology 593:67-79, 2010.

Wheless L, Ruczinski I, Alani RM, Clipp S, Hoffman-Bolton J, Jorgensen TJ, Liegeois NJ, Strickland PT, Alberg AJ: The association between skin characteristics and skin cancer prevention behaviors. Cancer Epidemiology, Biomarkers and Prevention 18(10):2613-9, 2009.

Miller CL, Murakami P, Ruczinski I, Ross RG, Sinkus M, Sullivan B, Leonard S: Two complex genotypes relevant to the kynurenine pathway and melanotropin function show association with schizophrenia and bipolar disorder. Schizophrenia Research 113(2-3):259-67, 2009.

Jorgensen TJ, Ruczinski I, Kessing B, Smith MW, Shugart YY, Alberg AJ: Hypothesis-driven candidate gene association studies: practical design and analytical considerations. American Journal of Epidemiology 170(8):986-93, 2009.

Gallicchio L, Chang HH, Christo DK, Thuita L, Huang HY, Strickland P, Ruczinski I, Clipp S, Helzlsouer KJ: Single nucleotide polymorphisms in obesity-related genes and all-cause and cause-specific mortality: a prospective cohort study. BMC Medical Genetics 10(1):103, 2009.

Price AL, Tandon A, Patterson N, Barnes KC, Rafaels N, Ruczinski I, Beaty TH, Mathias R, Reich D, Myers S: Sensitive detection of chromosomal segments of distinct ancestry in admixed populations. PLoS Genetics 5(6):e1000519, 2009.

Himes BE, Hunninghake GM, Baurley JW, Rafaels NM, Sleiman P, Strachan DP, Wilk JB, Willis-Owen SA, Klanderman B, Lasky-Su J, Lazarus R, Murphy AJ, Soto-Quiros ME, Avila L, Beaty T, Mathias RA, Ruczinski I, Barnes KC, Celedon JC, Cookson WO, Gauderman WJ, Gilliland FD, Hakonarson H, Lange C, Moffatt MF, O'Connor GT, Raby BA, Silverman EK, Weiss ST: Genome-wide association analysis identifies PDE4D as an asthma-susceptibility gene. American Journal of Human Genetics 84(5):581-93, 2009.

Lam TK, Ruczinski I, Helzlsouer K, Shugart YY, Li KE, Clipp S, Strickland PT, Alberg AJ: Copy number variants of GSTM1 and GSTT1 in relation to lung cancer risk in a prospective cohort study. Annals of Epidemiology 19(8):546-52, 2009.

Ruczinski I, Plaxco KW: Some recommendations for the practitioner to improve the precision of experimentally determined protein folding rates and phi values. Proteins 74(2):461-74, 2009.

 

 

Daniel Scharfstein  Description: C:\Users\margo\my_doc\My Web Sites\Publication\UP_AR~11.gif(go to top of document)

Hauschild A, Chen SC, Weichenthal M, Blum A, King HC, Goldsmith J, Scharfstein D, Gutkowicz-Krusin D: To excise or not: impact of MelaFind on German dermatologists' decisions to biopsy atypical lesions. J Dtsch Dermatol Ges 12(7):606-14, 2014.

Nordell AD, McKenna M, Borges ÁH, Duprez D, Neuhaus J, Neaton JD, INSIGHT SMART (includes Scharfstein D), ESPRIT Study Groups, SILCAAT Scientific Committee: Severity of cardiovascular disease outcomes among patients with HIV is related to markers of inflammation and coagulation. J Am Heart Assoc 3(3):e000844, 2014.

Kharrazi H, Wang C, Scharfstein D: Prospective EHR-based clinical trials: the challenge of missing data. J Gen Intern Med 29(7):976-8, 2014.

Borges AH, O'Connor JL, Phillips AN, Baker JV, Vjecha MJ, Losso MH, Klinker H, Lopardo G, Williams I, Lundgren JD, INSIGHT SMART Study Group (includes Scharfstein D), ESPRIT Study Group, SILCAAT Scientific Committee: Factors associated with D-dimer levels in HIV-infected individuals. PLoS One 9(3):e90978, 2014.

Li T, Hutfless S, Scharfstein DO, Daniels MJ, Hogan JW, Little RJ, Roy JA, Law AH, Dickersin K: Standards should be applied in the prevention and handling of missing data for patient-centered outcomes research: a systematic review and expert consensus. J Clin Epidemiol 67(1):15-32, 2014.

Marsteller JA, Hsu YJ, Wen M, Wolff J, Frick K, Reider L, Scharfstein D, Boyd C, Leff B, Schwartz L, Karm L, Boult C: Effects of guided care on providers' satisfaction with care: a three-year matched-pair cluster-randomized trial. Popul Health Manag 16(5):317-25, 2013.

Paryavi E, Stall A, Gupta R, Scharfstein DO, Castillo RC, Zadnik M, Hui E, O'Toole RV: Predictive model for surgical site infection risk after surgery for high-energy lower-extremity fractures: development of the Risk of Infection in Orthopedic Trauma Surgery Score. J Trauma Acute Care Surg 74(6):1521-7, 2013.

Bjerk SM, Baker JV, Emery S, Neuhaus J, Angus B, Gordin FM, Pett SL, Stephan C, Kunisaki KM, INSIGHT SMART Study Group (includes Scharfstein D): Biomarkers and bacterial pneumonia risk in patients with treated HIV infection: a case-control study. PLoS One 8(2):e56249, 2013.

Zetterberg E, Neuhaus J, Baker JV, Somboonwit C, Llibre JM, Palfreeman A, Chini M, Lundgren JD, INSIGHT SMART Study Group (includes Scharfstein D): Platelet count kinetics following interruption of antiretroviral treatment. AIDS 27(1):59-68, 2013.

Boult C, Leff B, Boyd CM, Wolff JL, Marsteller JA, Frick KD, Wegener S, Reider L, Frey K, Mroz TM, Karm L, Scharfstein DO: A matched-pair cluster-randomized trial of guided care for high-risk older patients. J Gen Intern Med 28(5):612-21, 2013.

Hamlyn E, Ewings FM, Porter K, Cooper DA, Tambussi G, Schechter M, Pedersen C, Okulicz JF, McClure M, Babiker A, Weber J, Fidler S, INSIGHT SMART and SPARTAC Investigators (includes Scharfstein DO): Plasma HIV viral rebound following protocol-indicated cessation of ART commenced in primary and chronic HIV infection. PLoS One 7(8):e43754, 2012.

Dattalo M, Giovannetti ER, Scharfstein D, Boult C, Wegener S, Wolff JL, Leff B, Frick KD, Reider L, Frey K, Noronha G, Boyd C: Who participates in chronic disease self-management (CDSM) programs? differences between participants and nonparticipants in a population of multimorbid older adults. Med Care 50(12):1071-5, 2012.

Little RJ, D'Agostino R, Cohen ML, Dickersin K, Emerson SS, Farrar JT, Frangakis C, Hogan JW, Molenberghs G, Murphy SA, Neaton JD, Rotnitzky A, Scharfstein D, Shih WJ, Siegel JP, Stern H: The prevention and treatment of missing data in clinical trials. New England Journal of Medicine 367(14):1355-60, 2012.

Scharfstein DO, Hogan J, Herman A: On the prevention and analysis of missing data in randomized clinical trials: the state of the art. Journal of Bone & Joint Surgery 94 Suppl 1:80-4, 2012.

Castillo RC, Scharfstein DO, MacKenzie EJ: Observational studies in the era of randomized trials: finding the balance. Journal of Bone & Joint Surgery 94 Suppl 1:112-7, 2012.

Scharfstein D, Onicescu G, Goodman S, Whitaker R: Analysis of subgroup effects in randomized trials when subgroup membership is missing: application to the second Multicenter Automatic Defibrillator Intervention Trial. Applied Statistics 60(4):607-617, 2011.

Wang W, Scharfstein D, Wang C, Daniels M, Needham D, Brower R, the NHLBI ARDS Clinical Network: Estimating the causal effect of low tidal volume ventilation on survival in patients with acute lung injury. Applied Statistics 60(4):475-496, 2011.

Bobb JF, Scharfstein DO, Daniels MJ, Collins FS, Kelada S: Multiple imputation of missing phenotype data for QTL mapping. Statistical Applications in Genetics and Molecular Biology 10(1): Article 29, 2011.

Boult C, Reider L, Leff B, Frick KD, Boyd CM, Wolff JL, Frey K, Karm L, Wegener ST, Mroz T, Scharfstein DO: The effect of guided care teams on the use of health services: results from a cluster-randomized controlled trial. Archives of Internal Medicine 171(5):460-6, 2011.

Skolasky RL, Green AF, Scharfstein D, Boult C, Reider L, Wegener ST: Psychometric properties of the patient activation measure among multimorbid older adults. Health Services Research 46(2):457-78, 2011.

Reshef S, Fried L, Beauchamp N, Scharfstein D, Reshef D, Goodman S: Diastolic blood pressure levels and ischemic stroke incidence in older adults with white matter lesions. Journals of Gerontology Series A 66(1):74-81, 2011.

Wang C, Daniels MJ, Scharfstein DO, Land S: A Bayesian shrinkage model for incomplete longitudinal binary data with application to the breast cancer prevention trial. Journal of the American Statistical Association 105(492):1333-1346, 2010.

Wolff JL, Giovannetti ER, Boyd CM, Reider L, Palmer S, Scharfstein D, Marsteller J, Wegener ST, Frey K, Leff B, Frick KD, Boult C: Effects of guided care on family caregivers. Gerontologist 50(4):459-70, 2010.

Marsteller JA, Hsu YJ, Reider L, Frey K, Wolff J, Boyd C, Leff B, Karm L, Scharfstein D, Boult C: Physician satisfaction with chronic care processes: a cluster-randomized trial of guided care. Annals of Family Medicine 8(4):308-15, 2010.

MacKenzie EJ, Weir S, Rivara FP, Jurkovich GJ, Nathens AB, Wang W, Scharfstein DO, Salkever DS: The value of trauma center care. Journal of Trauma 69(1):1-10, 2010.

Varadhan R, Weiss CO, Segal JB, Wu AW, Scharfstein D, Boyd C: Evaluating health outcomes in the presence of competing risks: a review of statistical methods and clinical applications. Medical Care 48(6 Suppl):S96-105, 2010.

Boyd CM, Reider L, Frey K, Scharfstein D, Leff B, Wolff J, Groves C, Karm L, Wegener S, Marsteller J, Boult C: The effects of guided care on the perceived quality of health care for multi-morbid older persons: 18-month outcomes from a cluster-randomized controlled trial. Journal of General Internal Medicine 25(3):235-42, 2010.

Wang W, Scharfstein D, Tan Z, MacKenzie EJ: Causal inference in outcome-dependent two-phase sampling designs. Journal of the Royal Statistical Society-B 71(5):947-969, 2009.

Rodger AJ, Fox Z, Lundgren JD, Kuller LH, Boesecke C, Gey D, Skoutelis A, Goetz MB, Phillips AN, INSIGHT Strategies for Management of Antiretroviral Therapy (SMART) Study Group (includes

Scharfstein D): Activation and coagulation biomarkers are independent predictors of the development of opportunistic disease in patients with HIV infection. Journal of Infectious Diseases 200(6):973-83, 2009.

Leff B, Reider L, Frick KD, Scharfstein DO, Boyd CM, Frey K, Karm L, Boult C: Guided care and the cost of complex healthcare: a preliminary report. American Journal of Managed Care 15(8):555-9, 2009.

Joffe A, McNeely C, Colantuoni E, An MW, Wang W, Scharfstein D: Evaluation of school-based smoking-cessation interventions for self-described adolescent smokers. Pediatrics 124(2):e187-94, 2009.

Egleston BL, Scharfstein DO, MacKenzie E: On estimation of the survivor average causal effect in observational studies when important confounders are missing due to death. Biometrics 65(2):497-504, 2009.

Wolff JL, Rand-Giovannetti E, Palmer S, Wegener S, Reider L, Frey K, Scharfstein D, Boult C: Caregiving and chronic care: the guided care program for families and friends. Journals of Gerontology Series A 64(7):785-91, 2009.

Dodd-O JM, Hristopoulos M, Scharfstein D, Brower R, Hassoun P, King LS, Becker P, Liu M, Wang W, Hassoun HT, Rabb H: Interactive effects of mechanical ventilation and kidney health on lung function in an in vivo mouse model. American Journal of Physiology. Lung Cellular and Molecular Physiology 296(1):L3-L11, 2009.

 

 

Elizabeth Stuart  Description: C:\Users\margo\my_doc\My Web Sites\Publication\UP_AR~11.gif (go to top of document)

Leacy FP, Stuart EA: On the joint use of propensity and prognostic scores in estimation of the average treatment effect on the treated: a simulation study. Stat Med 33(20):3488-508, 2014.

DuGoff EH, Bekelman JE, Stuart EA, Armstrong K, Pollack CE: Surgical quality is more than volume: the association between changing urologists and complications for patients with localized prostate cancer. Health Serv Res 49(4):1165-83, 2014.

Pacek LR, Latkin C, Crum RM, Stuart EA, Knowlton AR: Current cigarette smoking among HIV-positive current and former drug users: associations with individual and social characteristics. AIDS Behav 18(7):1368-77, 2014.

Jarlenski M, Bleich SN, Bennett WL, Stuart EA, Barry CL: Medicaid enrollment policy increased smoking cessation among pregnant women but had no impact on birth outcomes. Health Aff (Millwood) 33(6):997-1005, 2014.

Lee GP, Stuart EA, Ialongo NS, Martins SS: Parental monitoring trajectories and gambling among a longitudinal cohort of urban youth. Addiction 109(6):977-85, 2014.

Tung GJ, Vernick JS, Stuart EA, Webster DW: Political factors affecting the enactment of state-level clean indoor air laws. Am J Public Health 104(6):e92-7, 2014.

Pacek LR, Latkin C, Crum RM, Stuart EA, Knowlton AR: Interest in quitting and lifetime quit attempts among smokers living with HIV infection. Drug Alcohol Depend 138:220-4, 2014.

Chan GJ, Stuart EA, Zaman M, Mahmud AA, Baqui AH, Black RE: The effect of intrapartum antibiotics on early-onset neonatal sepsis in Dhaka, Bangladesh: a propensity score matched analysis. BMC Pediatr 14(1):104, 2014.

Gross AL, Brandt J, Bandeen-Roche K, Carlson MC, Stuart EA, Marsiske M, Rebok GW: Do older adults use the method of loci? Results from the ACTIVE Study. Exp Aging Res 40(2):140-63, 2014.

Leis JA, Heron J, Stuart EA, Mendelson T: Associations between maternal mental health and child emotional and behavioral problems: does prenatal mental health matter? J Abnorm Child Psychol 42(1):161-71, 2014.

Dugoff EH, Schuler M, Stuart EA: Generalizing observational study results: applying propensity score methods to complex surveys. Health Serv Res 49(1):284-303, 2014.

Zablotsky B, Kalb LG, Freedman B, Vasa R, Stuart EA: Health care experiences and perceived financial impact among families of children with an autism spectrum disorder. Psychiatr Serv 65(3):395-8, 2014.

Rudolph KE, Gary S W, Stuart EA, Glass TA, Marques AH, Duncko R, Merikangas KR: The association between cortisol and neighborhood disadvantage in a U.S. population-based sample of adolescents. Health Place 25:68-77, 2014.

Hollm-Delgado MG, Stuart EA, Black RE: Acute lower respiratory infection among Bacille Calmette-Guerin (BCG)-vaccinated children. Pediatrics 133(1):e73-81, 2014.

Olsen RB, Orr LL, Bell SH, Stuart EA: External validity in policy evaluations that choose sites purposively. J Policy Anal Manage 32(1):107-121, 2013.

Hanna DB, Buchacz K, Gebo KA, Hessol NA, Horberg MA, Jacobson LP, Kirk GD, Kitahata MM, Korthuis PT, Moore RD, Napravnik S, Patel P, Silverberg MJ, Sterling TR, Willig JH, Collier A, Samji H, Thorne JE, Althoff KN, Martin JN, Rodriguez B, Stuart EA, Gange SJ, North American AIDS Cohort Collaboration on Research and Design (NA-ACCORD) of the International Epidemiologic Databases to Evaluate AIDS (IeDEA): Association between U.S. state AIDS drug assistance program (ADAP) features and HIV antiretroviral therapy initiation, 2001-2009. PLoS One 8(11):e78952, 2013.

Liu W, Kuramoto SJ, Stuart EA: An introduction to sensitivity analysis for unobserved confounding in nonexperimental prevention research. Prev Sci 14(6):570-80, 2013.

Petras H, Buckley JA, Leoutsakos JM, Stuart EA, Ialongo NS: The use of multiple versus single assessment time points to improve screening accuracy in identifying children at risk for later serious antisocial behavior. Prev Sci 14(5):423-36, 2013.

Stuart EA, Lee BK, Leacy FP: Prognostic score-based balance measures can be a useful diagnostic for propensity score methods in comparative effectiveness research. J Clin Epidemiol 66(8 Suppl):S84-S90, 2013.

Crum RM, Mojtabai R, Lazareck S, Bolton JM, Robinson J, Sareen J, Green KM, Stuart EA, La Flair L, Alvanzo AA, Storr CL: A prospective assessment of reports of drinking to self-medicate mood symptoms with the incidence and persistence of alcohol dependence. JAMA Psychiatry 70(7):718-26, 2013.

Zablotsky B, Bradshaw CP, Stuart EA: The association between mental health, stress, and coping supports in mothers of children with autism spectrum disorders. J Autism Dev Disord 43(6):1380-93, 2013.

Mendelson T, Leis JA, Perry DF, Stuart EA, Tandon SD: Impact of a preventive intervention for perinatal depression on mood regulation, social support, and coping. Arch Womens Ment Health 16(3):211-8, 2013.

Werner RM, Duggan M, Duey K, Zhu J, Stuart EA: The patient-centered medical home: an evaluation of a single private payer demonstration in New Jersey. Med Care 51(6):487-93, 2013.

Landa RJ, Gross AL, Stuart EA, Faherty A: Developmental trajectories in children with and without autism spectrum disorders: the first 3 years. Child Dev 84(2):429-42, 2013.

Kuramoto SJ, Runeson B, Stuart EA, Lichtenstein P, Wilcox HC: Time to hospitalization for suicide attempt by the timing of parental suicide during offspring early development. JAMA Psychiatry 70(2):149-57, 2013.

Crum RM, La Flair L, Storr CL, Green KM, Stuart EA, Alvanzo AA, Lazareck S, Bolton JM, Robinson J, Sareen J, Mojtabai R: Reports of drinking to self-medicate anxiety symptoms: longitudinal assessment for subgroups of individuals with alcohol dependence. Depress Anxiety 30(2):174-83, 2013.

Stuart EA, Hanna DB: Should epidemiologists be more sensitive to design sensitivity? Epidemiology 24(1):88-9, 2013.

Kalb LG, Stuart EA, Freedman B, Zablotsky B, Vasa R: Psychiatric-related emergency department visits among children with an autism spectrum disorder. Pediatr Emerg Care 28(12):1269-76, 2012.

Kruse GB, Polsky D, Stuart EA, Werner RM: The impact of hospital pay-for-performance on hospital and Medicare costs. Health Serv Res 47(6):2118-36, 2012.

Landa RJ, Gross AL, Stuart EA, Bauman M: Latent class analysis of early developmental trajectory in baby siblings of children with autism. Journal of Child Psychology & Psychiatry 53(9):986-96, 2012.

Leis JA, Heron J, Stuart EA, Mendelson T: Associations between depressive and anxious symptoms and prenatal alcohol use. Maternal & Child Health Journal 16(6):1304-11, 2012.

Marcus SM, Stuart EA, Wang P, Shadish WR, Steiner PM: Estimating the causal effect of randomization versus treatment preference in a doubly randomized preference trial. Psychological Methods 17(2):244-54, 2012.

Freedman BH, Kalb LG, Zablotsky B, Stuart EA: Relationship status among parents of children with autism spectrum disorders: a population-based study. Journal of Autism and Developmental Disorders 42(4):539-48. 2012.

Wang Y, Storr CL, Green KM, Zhu S, Stuart EA, Lynne-Landsman SD, Clemans KH, Petras H, Kellam SG, Ialongo NS: The effect of two elementary school-based prevention interventions on being offered tobacco and the transition to smoking. Drug and Alcohol Dependence 120(1-3):202-8, 2012.

Sahastrabuddhe S, Gupta A, Stuart E, Godbole S, Ghate M, Sahay S, Gangakhedkar R, Risbud A, Divekar A, Bollinger R, Mehendale SM: Sexually transmitted infections and risk behaviors among transgender persons (Hijras) of Pune, India. Journal of Acquired Immune Deficiency Syndromes 59(1):72-8, 2012.

Karakus MC, Salkever DS, Slade EP, Ialongo N, Stuart E: Implications of middle school behavior problems for high school graduation and employment outcomes of young adults: estimation of a recursive model. Education Economics 20(1):33-52, 2012

Villanti AC, Cullen J, Vallone DM, Stuart EA: Use of propensity score matching to evaluate a national smoking cessation media campaign. Evaluation Review 35(6):571-91, 2011.

Christensen AL, Stuart EA, Perry DF, Le HN: Unintended pregnancy and perinatal depression trajectories in low-income, high-risk Hispanic immigrants. Prevention Science 12(3):289-99, 2011.

Stuart EA, Cole SR, Bradshaw CP, Leaf PJ: The use of propensity scores to assess the generalizability of results from randomized trials. Journal of the Royal Statistical Society-A 174(2):369-386, 2011.

Werner RM, Konetzka RT, Stuart EA, Polsky D: Changes in patient sorting to nursing homes under public reporting: improved patient matching or provider gaming? Health Services Research 46(2):555-71, 2011.

Azur MJ, Stuart EA, Frangakis C, Leaf PJ: Multiple imputation by chained equations: what is it and how does it work? International Journal of Methods in Psychiatric Research 20(1):40-49, 2011.

Jo B, Stuart EA, Mackinnon DP, Vinokur AD: The use of propensity scores in mediation analysis. Multivariate Behavioral Research 46(3):425-452, 2011.

Lee BK, Lessler J, Stuart EA: Weight trimming and propensity score weighting. PLoS One 6(3):e18174, 2011.

Werner RM, Kolstad JT, Stuart EA, Polsky D: The effect of pay-for-performance in hospitals: lessons for quality improvement. Health Affairs 30(4):690-8, 2011.

Le HN, Perry DF, Stuart EA: Randomized controlled trial of a preventive intervention for perinatal depression in high-risk Latinas. Journal of Consulting and Clinical Psychology 79(2):135-41, 2011.

Landa RJ, Holman KC, O'Neill AH, Stuart EA: Intervention targeting development of socially synchronous engagement in toddlers with autism spectrum disorder: a randomized controlled trial. Journal of Child Psychology & Psychiatry 52(1):13-21, 2011.

Werner RM, Konetzka RT, Stuart EA, Polsky D: Changes in patient sorting to nursing homes under public reporting: improved patient matching or provider gaming? Health Services Research 46(2):555-71, 2011.

Stuart EA, Ialongo NS: Matching methods for selection of subjects for follow-up. Multivariate Behavioral Research 45(4):746-765, 2010.

Green KM, Doherty EE, Stuart EA, Ensminger ME: Does heavy adolescent marijuana use lead to criminal involvement in adulthood? Evidence from a multiwave longitudinal study of urban African Americans. Drug and Alcohol Dependence 112(1-2):117-25, 2010.

Kuramoto SJ, Stuart EA, Runeson B, Lichtenstein P, Langstrom N, Wilcox HC: Maternal or paternal suicide and offspring's psychiatric and suicide-attempt hospitalization risk. Pediatrics 126(5):e1026-32, 2010.

Stuart EA, Cole SR, Bradshaw CP, Leaf PJ: The use of propensity scores to assess the generalizability of results from randomized trials. Journal of the Royal Statistical Society A 174(2):369-386, 2010.

Harder VS, Stuart EA, Anthony JC: Propensity score techniques and the assessment of measured covariate balance to test causal associations in psychological research. Psychological Methods 15(3):234-49, 2010.

Stuart EA: Matching methods for causal inference: a review and a look forward. Statistical Science 25(1):1-21, 2010.

Werner R, Stuart E, Polsky D: Public reporting drove quality gains at nursing homes. Health Affairs 29(9):1706-1713, 2010.

Cole SR, Stuart EA: Generalizing evidence from randomized clinical trials to target populations: the ACTG 320 trial. American Journal of Epidemiology 172(1):107-15, 2010.

Lee BK, Lessler J, Stuart EA: Improving propensity score weighting using machine learning. Statistics in Medicine 29(3):337-46, 2010.

Stuart EA, Marcus SM, Horvitz-Lennon MV, Gibbons RD, Normand SL: Using non-experimental data to estimate treatment effects. Psychiatric Annals 39(7):41451, 2009.

Jo B, Stuart EA: On the use of propensity scores in principal causal effect estimation. Statistics in Medicine 28(23):2857-75, 2009.

Werner RM, Konetzka RT, Stuart EA, Norton EC, Polsky D, Park J: Impact of public reporting on quality of postacute care. Health Services Research 44(4):1169-87, 2009.

Cooley-Strickland M, Quille TJ, Griffin RS, Stuart EA, Bradshaw CP, Furr-Holden D: Community violence and youth: affect, behavior, substance use, and academics. Clinical Child and Family Psychology Review 12(2):127-56, 2009.

Stuart EA, Azur M, Frangakis C, Leaf P: Multiple imputation with large data sets: a case study of the Children's Mental Health Initiative. American Journal of Epidemiology 169(9):1133-9, 2009.

Wang Y, Browne DC, Petras H, Stuart EA, Wagner FA, Lambert SF, Kellam SG, Ialongo NS: Depressed mood and the effect of two universal first grade preventive interventions on survival to the first tobacco cigarette smoked among urban youth. Drug and Alcohol Dependence 100(3):194-203, 2009.

 

 

 

Elizabeth Sugar Description: C:\Users\margo\my_doc\My Web Sites\Publication\UP_AR~11.gif (go to top of document)

Kozak I, Vaidya V, Van Natta ML, Pak JW, May KP, Thorne JE, Studies of the Ocular Complications of AIDS Research Group (includes Sugar E): The prevalence and incidence of epiretinal membranes in eyes with inactive extramacular CMV retinitis. Invest Ophthalmol Vis Sci 55(7):4304-12, 2014.

Sumino K, Sugar EA, Irvin CG, Kaminsky DA, Shade D, Wei CY, Holbrook JT, Wise RA, Castro M, Writing Committee for the American Lung Association Asthma Clinical Research Centers: Variability of methacholine bronchoprovocation and the effect of inhaled corticosteroids in mild asthma. Ann Allergy Asthma Immunol 112(4):354-360.e1, 2014.

Lang JE, Dozor AJ, Holbrook JT, Mougey E, Krishnan S, Sweeten S, Wise RA, Teague WG, Wei CY, Shade D, Lima JJ, American Lung Association-Asthma Clinical Research Centers (includes Sugar E): Biologic mechanisms of environmental tobacco smoke in children with poorly controlled asthma: results from a multicenter clinical trial. J Allergy Clin Immunol Pract 1(2):172-80, 2013.

Schueneman AJ, Sugar EA, Uram J, Bigelow E, Herman JM, Edil BH, Jaffee EM, Zheng L, Laheru DA: Low total lymphocyte count is associated with poor survival in patients with resected pancreatic adenocarcinoma receiving a GM-CSF secreting pancreatic tumor vaccine. Ann Surg Oncol 20 Suppl 3:S725-30, 2013.

Lang JE, Holbrook JT, Wise RA, Dixon AE, Teague WG, Wei CY, Irvin CG, Shade D, Lima JJ, American Lung Association-Asthma Clinical Research Centers (includes Sugar E): Obesity in children with poorly controlled asthma: sex differences. Pediatr Pulmonol 48(9):847-56, 2013.

Kempen JH, Sugar EA, Jaffe GJ, Acharya NR, Dunn JP, Elner SG, Lightman SL, Thorne JE, Vitale AT, Altaweel MM, Multicenter Uveitis Steroid Treatment (MUST) Trial Research Group: Fluorescein angiography versus optical coherence tomography for diagnosis of uveitic macular edema. Ophthalmology 120(9):1852-9, 2013.

Friedman DS, Holbrook JT, Ansari H, Alexander J, Burke A, Reed SB, Katz J, Thorne JE, Lightman SL, Kempen JH, MUST Research Group (includes Sugar E): Risk of elevated intraocular pressure and glaucoma in patients with uveitis: results of the multicenter uveitis steroid treatment trial. Ophthalmology 120(8):1571-9, 2013.

Le DT, Lutz E, Uram JN, Sugar EA, Onners B, Solt S, Zheng L, Diaz LA Jr, Donehower RC, Jaffee EM, Laheru DA: Evaluation of ipilimumab in combination with allogeneic pancreatic tumor cells transfected with a GM-CSF gene in previously treated pancreatic cancer. J Immunother 36(7):382-9, 2013.

Stearns V, Jacobs LK, Fackler M, Tsangaris TN, Rudek MA, Higgins M, Lange J, Cheng Z, Slater SA, Jeter SC, Powers P, Briest S, Chao C, Yoshizawa C, Sugar E, Espinoza-Delgado I, Sukumar S, Gabrielson E, Davidson NE: Biomarker modulation following short-term vorinostat in women with newly diagnosed primary breast cancer. Clin Cancer Res 19(14):4008-16, 2013.

Beachler DC, D'Souza G, Sugar EA, Xiao W, Gillison ML: Natural history of anal vs oral HPV infection in HIV-infected men and women. J Infect Dis 208(2):330-9, 2013.

Gangaputra S, Drye L, Vaidya V, Thorne JE, Jabs DA, Lyon AT, Studies of the Ocular Complications of AIDS (SOCA) Research Group (includes Sugar E): Non-cytomegalovirus ocular opportunistic infections in patients with acquired immunodeficiency syndrome. Am J Ophthalmol 155(2):206-212, 2013.

Sugar E, Pascoe AJ, Azad N: Reporting of preclinical tumor-graft cancer therapeutic studies. Cancer Biol Ther 13(13):1262-8, 2012.

Kempen JH, Sugar EA, Lyon AT, Lewis RA, Jabs DA, Heinemann MH, Dunn JP, Studies of Ocular Complications of AIDS Research Group: Risk of cataract in persons with cytomegalovirus retinitis and the acquired immune deficiency syndrome. Ophthalmology 119(11):2343-50, 2012.

Sugar EA, Jabs DA, Ahuja A, Thorne JE, Danis RP, Meinert CL, Studies of the Ocular Complications of AIDS Research Group: Incidence of cytomegalovirus retinitis in the era of highly active antiretroviral therapy. American Journal of Ophthalmology 153(6):1016-24, 2012.

Sumino K, Sugar EA, Irvin CG, Kaminsky DA, Shade D, Wei CY, Holbrook JT, Wise RA, Castro M, American Lung Association Asthma Clinical Research Centers: Methacholine challenge test: Diagnostic characteristics in asthmatic patients receiving controller medications. Journal of Allergy & Clinical Immunology 130(1):69-75, 2012.

Taylor SR, Lightman SL, Sugar EA, Jaffe GJ, Freeman WR, Altaweel MM, Kozak I, Holbrook JT, Jabs DA, Kempen JH: The impact of macular edema on visual function in intermediate, posterior, and panuveitis. Ocular Immunology & Inflammation 20(3):171-81, 2012.

Sen HN, Drye LT, Goldstein DA, Larson TA, Merrill PT, Pavan PR, Sheppard JD, Burke A, Srivastava SK, Jabs DA, Multicenter Uveitis Steroid Treatment (MUST) Trial Research Group (includes Sugar E): Hypotony in patients with uveitis: The Multicenter Uveitis Steroid Treatment (MUST) Trial. Ocular Immunology & Inflammation 20(2):104-12, 2012.

Fraser AV, Goodwin AC, Hacker-Prietz A, Sugar E, Woster PM, Casero RA Jr.: Knockdown of ornithine decarboxylase antizyme 1 causes loss of uptake regulation leading to increased N1, N11-bis(ethyl)norspermine (BENSpm) accumulation and toxicity in NCI H157 lung cancer cells. Amino Acids 42(2-3):529-38, 2012.

Frick KD, Drye LT, Kempen JH, Dunn JP, Holland GN, Latkany P, Rao NA, Sen HN, Sugar EA, Thorne JE, Wang RC, Holbrook JT, Multicenter Uveitis Steroid Treatment-MUST Trial Research Group: Associations among visual acuity and vision- and health-related quality of life among patients in the multicenter uveitis steroid treatment trial. Investigative Ophthalmology & Visual Science 53(3):1169-76, 2012.

Writing Committee for the American Lung Association Asthma Clinical Research Centers (includes Sugar EA), Holbrook JT, Wise RA, Gold BD, Blake K, Brown ED, Castro M, Dozor AJ, Lima JJ, Mastronarde JG, Sockrider MM, Teague WG: Lansoprazole for children with poorly controlled asthma: a randomized controlled trial. Journal of the American Medical Association 307(4):373-81, 2012.

Le DT, Brockstedt DG, Nir-Paz R, Hampl J, Mathur S, Nemunaitis J, Sterman DH, Hassan R, Lutz E, Moyer B, Giedlin M, Louis JL, Sugar EA, Pons A, Cox AL, Levine J, Murphy AL, Illei P, Dubensky TW Jr, Eiden JE, Jaffee EM, Laheru DA: A live-attenuated Listeria vaccine (ANZ-100) and a live-attenuated Listeria vaccine expressing mesothelin (CRS-207) for advanced cancers: phase i studies of safety and immune induction. Clinical Cancer Research 18(3):858-68, 2012.

Gangaputra SS, Altaweel MM, Peng Q, Friedman DS, Rao PK, Foster CS, Kim RY, Reed SB, Srivastava SK, Wong IG, Kempen JH, MUST Trial Research Group (includes Sugar EA): Morphologic assessment for glaucoma in the Multicenter Uveitis Steroid Treatment (MUST) Trial. Ocular Immunology and Inflammation 19(4):267-74, 2011.

Sezgin E, Van Natta ML, Ahuja A, Lyon A, Srivastava S, Troyer JL, O'Brien SJ, Jabs DA, Studies of the Ocular Complications of AIDS Research Group (includes Sugar EA): Association of host genetic risk factors with the course of cytomegalovirus retinitis in patients infected with human immunodeficiency virus. American Journal of Ophthalmology 151(6):999-1006, 2011.

Drummond MB, Peters SP, Castro M, Holbrook JT, Irvin CG, Smith LJ, Wise RA, Sugar EA, American Lung Association Asthma Clinical Research Center Research Group: Risk factors for montelukast treatment failure in step-down therapy for controlled asthma. Journal of Asthma 48(10):1051-7, 2011.

Sugar EA, Jabs DA, Altaweel MM, Lightman S, Acharya N, Vitale AT, Thorne JE, Multicenter Uveitis Steroid Treatment (MUST) Trial Research Group: Identifying a clinically meaningful threshold for change in uveitic macular edema evaluated by optical coherence tomography. American Journal of Ophthalmology 152(6):1044-1052, 2011.

Multicenter Uveitis Steroid Treatment (MUST) Trial Research Group, Kempen JH, Altaweel MM, Holbrook JT, Jabs DA, Louis TA, Sugar EA, Thorne JE: Randomized comparison of systemic anti-inflammatory therapy versus fluocinolone acetonide implant for intermediate, posterior, and panuveitis: the multicenter uveitis steroid treatment trial. Ophthalmology 118(10):1916-26, 2011.

Dixon AE, Clerisme-Beaty EM, Sugar EA, Cohen RI, Lang JE, Brown ED, Richter JE, Irvin CG, Mastronarde JG: Effects of obstructive sleep apnea and gastroesophageal reflux disease on asthma control in obesity. Journal of Asthma 48(7):707-13, 2011.

Lutz E, Yeo CJ, Lillemoe KD, Biedrzycki B, Kobrin B, Herman J, Sugar E, Piantadosi S, Cameron JL, Solt S, Onners B, Tartakovsky I, Choi M, Sharma R, Illei PB, Hruban RH, Abrams RA, Le D, Jaffee E, Laheru D: A lethally irradiated allogeneic granulocyte-macrophage colony stimulating factor-secreting tumor vaccine for pancreatic adenocarcinoma. A Phase II trial of safety, efficacy, and immune activation. Annals of Surgery 253(2):328-35, 2011.

Jabs DA, Ahuja A, Van Natta M, Lyon A, Srivastava S, Gangaputra S, Studies of the Ocular Complications of AIDS Research Group (includes Sugar EA): Course of cytomegalovirus retinitis in the era of highly active antiretroviral therapy: five-year outcomes. Ophthalmology 117(11):2152-61, 2010.

Puhan MA, Van Natta ML, Palella FJ, Addessi A, Meinert C, Ocular Complications of AIDS Research Group (includes Sugar EA): Excess mortality in patients with AIDS in the era of highly active antiretroviral therapy: temporal changes and risk factors. Clinical Infectious Diseases 51(8):947-56, 2010.

Fakhry C, Sugar E, D'Souza G, Gillison M: Two-week versus six-month sampling interval in a short-term natural history study of oral HPV infection in an HIV-positive cohort. PLoS One 5(7):e11918, 2010.

Redmond KJ, Wolfgang CL, Sugar EA, Ahn J, Nathan H, Laheru D, Edil BH, Choti MA, Pawlik TM, Hruban RH, Cameron JL, Herman JM: Adjuvant chemoradiation therapy for adenocarcinoma of the distal pancreas. Annals of Surgical Oncology 17(12):3112-9, 2010.

Multicenter Uveitis Steroid Treatment Trial Research Group, Kempen JH, Altaweel MM, Holbrook JT, Jabs DA, Sugar EA: The Multicenter Uveitis Steroid Treatment Trial: rationale, design, and baseline characteristics. American Journal of Ophthalmology 149(4):550-561, 2010.

American Lung Association Asthma Clinical Research Centers (includes Sugar EA), Mastronarde JG, Anthonisen NR, Castro M, Holbrook JT, Leone FT, Teague WG, Wise RA: Efficacy of esomeprazole for treatment of poorly controlled asthma. New England Journal of Medicine 360(15):1487-99, 2009.

DiMango E, Holbrook JT, Simpson E, Reibman J, Richter J, Narula S, Prusakowski N, Mastronarde JG, Wise RA, American Lung Association Asthma Clinical Research Centers (includes Sugar EA): Effects of asymptomatic proximal and distal gastroesophageal reflux on asthma severity. American Journal of Respiratory and Critical Care Medicine 180(9):809-16, 2009.

Dixon AE, Sugar EA, Zinreich SJ, Slavin RG, Corren J, Naclerio RM, Ishii M, Cohen RI, Brown ED, Wise RA, Irvin CG, American Lung Association-Asthma Clinical Research Centers: Criteria to screen for chronic sinonasal disease. Chest 136(5):1324-32, 2009.

Wise RA, Bartlett SJ, Brown ED, Castro M, Cohen R, Holbrook JT, Irvin CG, Rand CS, Sockrider MM, Sugar EA, American Lung Association Asthma Clinical Research Centers: Randomized trial of the effect of drug presentation on asthma outcomes: the American Lung Association Asthma Clinical Research Centers. Journal of Allergy and Clinical Immunology 124(3):436-44, 2009.

Fandy TE, Herman JG, Kerns P, Jiemjit A, Sugar EA, Choi SH, Yang AS, Aucott T, Dauses T, Odchimar-Reissig R, Licht J, McConnell MJ, Nasrallah C, Kim MK, Zhang W, Sun Y, Murgo A, Espinoza-Delgado I, Oteiza K, Owoeye I, Silverman LR, Gore SD, Carraway HE: Early epigenetic changes and DNA damage do not predict clinical response in an overlapping schedule of 5-azacytidine and entinostat in patients with myeloid malignancies. Blood 114(13):2764-73, 2009.

Trimble CL, Peng S, Kos F, Gravitt P, Viscidi R, Sugar E, Pardoll D, Wu TC: A phase I trial of a human papillomavirus DNA vaccine for HPV16+ cervical intraepithelial neoplasia 2/3. Clinical Cancer Research 15(1):361-7, 2009.

 

 

 

 

Margaret Taub Description: C:\Users\margo\my_doc\My Web Sites\Publication\UP_AR~11.gif (go to top of document)

Schwender H, Li Q, Neumann C, Taub MA, Younkin SG, Berger P, Scharpf RB, Beaty TH, Ruczinski I: Detecting disease variants in case-parent trio studies using the Bioconductor software package trio. Genet Epidemiol 38(6):516-522, 2014.

Bureau A, Parker MM, Ruczinski I, Taub MA, Marazita ML, Murray JC, Mangold E, Noethen MM, Ludwig KU, Hetmanski JB, Bailey-Wilson JE, Cropp CD, Li Q, Szymczak S, Albacha-Hejazi H, Alqosayer K, Field LL, Wu-Chou YH, Doheny KF, Ling H, Scott AF, Beaty TH: Whole exome sequencing of distant relatives in multiplex families implicates rare variants in candidate genes for oral clefts. Genetics 197(3):1039-1044, 2014.

Wu T, Schwender H, Ruczinski I, Murray JC, Marazita ML, Munger RG, Hetmanski JB, Parker MM, Wang P, Murray T, Taub M, Li S, Redett RJ, Fallin MD, Liang KY, Wu-Chou YH, Chong SS, Yeow V, Ye X, Wang H, Huang S, Jabs EW, Shi B, Wilcox AJ, Jee SH, Scott AF, Beaty TH: Evidence of gene-environment interaction for two genes on chromosome 4 and environmental tobacco smoke in controlling the risk of nonsyndromic cleft palate. PLoS One 9(2):e88088, 2014.

Taub MA, Schwender HR, Younkin SG, Louis TA, Ruczinski I: On multi-marker tests for association in case-control studies. Front Genet 4:252, 2013.

Montaño CM, Irizarry RA, Kaufmann WE, Talbot K, Gur RE, Feinberg AP, Taub MA: Measuring cell-type specific differential methylation in human brain tissue. Genome Biol 14(8):R94, 2013.

Beaty TH, Taub MA, Scott AF, Murray JC, Marazita ML, Schwender H, Parker MM, Hetmanski JB, Balakrishnan P, Mansilla MA, Mangold E, Ludwig KU, Noethen MM, Rubini M, Elcioglu N, Ruczinski I: Confirming genes influencing risk to cleft lip with/without cleft palate in a case-parent trio study. Hum Genet 132(7):771-81, 2013.

Liu Y, Aryee MJ, Padyukov L, Fallin MD, Hesselberg E, Runarsson A, Reinius L, Acevedo N, Taub M, Ronninger M, Shchetynsky K, Scheynius A, Kere J, Alfredsson L, Klareskog L, Ekstrom TJ, Feinberg AP: Epigenome-wide association data implicate DNA methylation as an intermediary of genetic risk in rheumatoid arthritis. Nat Biotechnol 31(2):142-7, 2013.

Schwender H, Taub MA, Beaty TH, Marazita ML, Ruczinski I: Rapid testing of SNPs and gene-environment interactions in case-parent trio data based on exact analytic parameter estimation. Biometrics 68(3):766-73, 2012.

Murray T, Taub MA, Ruczinski I, Scott AF, Hetmanski JB, Schwender H, Patel P, Zhang TX, Munger RG, Wilcox AJ, Ye X, Wang H, Wu T, Wu-Chou YH, Shi B, Jee SH, Chong S, Yeow V, Murray JC, Marazita ML, Beaty TH: Examining markers in 8q24 to explain differences in evidence for association with cleft lip with/without cleft palate between Asians and Europeans. Genetic Epidemiology 36(4):392-9, 2012.

Taub MA, Schwender H, Beaty TH, Louis TA, Ruczinski I: Incorporating genotype uncertainties into the genotypic TDT for main effects and gene-environment interactions. Genetic Epidemiology 36(3):244-52, 2012.

Leek JT, Taub MA, Rasgon JL: A statistical approach to selecting and confirming validation targets in -omics experiments. BMC Bioinformatics 13(1):150, 2012.

Leek JT, Taub MA, Pineda FJ: Cooperation between referees and authors increases peer review accuracy. PLoS One 6(11):e26895, 2011.

Niranjan TS, Adamczyk A, Bravo HC, Taub MA, Wheelan SJ, Irizarry R, Wang T: Effective detection of rare variants in pooled DNA samples using Cross-pool tailcurve analysis. Genome Biology 12(9):R93, 2011.

Taub MA, Corrada Bravo H, Irizarry RA: Overcoming bias and systematic errors in next generation sequencing data. Genome Medicine 2(12):87, 2010.

 

Carol Thompson  Description: C:\Users\margo\my_doc\My Web Sites\Publication\UP_AR~11.gif (go to top of document)

Rutkow L, Vernick JS, Thompson CB, Pirrallo RG, Barnett DJ: Emergency preparedness law and willingness to respond in the EMS workforce. Prehosp Disaster Med 29(4):358-63, 2014.

Harrison KL, Errett NA, Rutkow L, Thompson CB, Anderson MK, Ferrell JL, Freiheit JM, Hudson R, Koch MM, McKee M, Mejia-Echeverry A, Spitzer JB, Storey D, Barnett DJ: An intervention for enhancing public health crisis response willingness among local health department workers: A qualitative programmatic analysis. Am J Disaster Med 9(2):87-96, 2014.

Everly GS Jr, Lee McCabe O, Semon NL, Thompson CB, Links JM: The development of a model of psychological first aid for non-mental health trained public health personnel: the Johns Hopkins RAPID-PFA. J Public Health Manag Pract 20 Suppl 5:S24-9, 2014.

Ziai WC, Tuhrim S, Lane K, McBee N, Lees K, Dawson J, Butcher K, Vespa P, Wright DW, Keyl PM, Mendelow AD, Kase C, Wijman C, Lapointe M, John S, Thompson R, Thompson C, Mayo S, Reilly P, Janis S, Awad I, Hanley DF, CLEAR III Investigators: A multicenter, randomized, double-blinded, placebo-controlled phase III study of Clot Lysis Evaluation of Accelerated Resolution of Intraventricular Hemorrhage (CLEAR III). Int J Stroke 9(4):536-42, 2014.

Barnett DJ, Thompson CB, Semon NL, Errett NA, Harrison KL, Anderson MK, Ferrell JL, Freiheit JM, Hudson R, McKee M, Mejia-Echeverry A, Spitzer J, Balicer RD, Links JM, Storey JD: EPPM and willingness to respond: the role of risk and efficacy communication in strengthening public health emergency response systems. Health Commun 29(6):598-609, 2014.

Kohn S, Semon N, Hedlin HK, Thompson CB, Marum F, Jenkins S, Slemp CC, Barnett DJ: Public health-specific personal disaster preparedness training: an academic-practice collaboration. J Emerg Manag 12(1):55-73, 2014.

Kozlowski LJ, Kost-Byerly S, Colantuoni E, Thompson CB, Vasquenza KJ, Rothman SK, Billett C, White ED, Yaster M, Monitto CL: Pain prevalence, intensity, assessment and management in a hospitalized pediatric population. Pain Manag Nurs 15(1):22-35, 2014.

Patel HD, Kates M, Pierorazio PM, Hyams ES, Gorin MA, Ball MW, Bhayani SB, Hui X, Thompson CB, Allaf ME: Survival after diagnosis of localized T1a kidney cancer: current population-based practice of surgery and nonsurgical management. Urology 83(1):126-32, 2014.

Trent M, Lehmann H, Butz A, Thompson C, Qian Q, Frick KD: Understanding consumer preferences for care of adolescents with pelvic inflammatory disease. Medecine Therapeutique Medecine de la Reproduction, Gynecologie et Endocrinologie 15(3):234-238, 2013.

Koo JJ, Wang J, Thompson CB, Merbs SL, Grant MP: Impact of hospital volume and specialization on the cost of orbital trauma care. Ophthalmology 120(12):2741-6, 2013.

Goodwin HE, Gill RS, Murakami PN, Thompson CB, Lewin JJ 3rd, Mirski MA: Dexmedetomidine preserves attention/calculation when used for cooperative and short-term intensive care unit sedation. J Crit Care 28(6):1113.e7-1113.e10, 2013.

Wenzel JA, Griffith KA, Shang J, Thompson CB, Hedlin H, Stewart KJ, Deweese T, Mock V: Impact of a home-based walking intervention on outcomes of sleep quality, emotional distress, and fatigue in patients undergoing treatment for solid tumors. Oncologist 18(4):476-84, 2013.

Neofytos D, Kobayashi K, Alonso CD, Cady-Reh J, Lepley D, Harris M, Desai N, Kraus E, Subramanian A, Treadway S, Ostrander D, Thompson C, Marr K: Epidemiology, risk factors, and outcomes of Clostridium difficile infection in kidney transplant recipients. Transpl Infect Dis 15(2):134-41, 2013.

Errett NA, Barnett DJ, Thompson CB, Tosatto R, Austin B, Schaffzin S, Ansari A, Semon NL, Balicer RD, Links JM: Assessment of medical reserve corps volunteers' emergency response willingness using a threat- and efficacy-based model. Biosecur Bioterror 11(1):29-40, 2013.

Turban S, Thompson CB, Parekh RS, Appel LJ: Effects of sodium intake and diet on racial differences in urinary potassium excretion: results from the Dietary Approaches to Stop Hypertension (DASH)-Sodium trial. Am J Kidney Dis 61(1):88-95, 2013.

Gupta M, Vang R, Yemelyanova AV, Kurman RJ, Li FR, Maambo EC, Murphy KM, DeScipio C, Thompson CB, Ronnett BM: Diagnostic reproducibility of hydatidiform moles: ancillary techniques (p57 immunohistochemistry and molecular genotyping) improve morphologic diagnosis for both recently trained and experienced gynecologic pathologists. Am J Surg Pathol 36(12):1747-60, 2012.

Errett NA, Thompson CB, Catlett C, Gwon H, Barnett DJ, Semon NL, Hsu E, Balice RD: Assessment of psychological preparedness and emergency response willingness of local public health department and hospital workers. Int J Emerg Ment Health 14(2): 125-133, 2012.

Singhi S, Tekes A, Thurnher M, Gilson WD, Izbudak I, Thompson CB, Huisman TA: Diffusion tensor imaging of the maturing paediatric cervical spinal cord: from the neonate to the young adult. J Neuroradiol 39(3):142-8, 2012.

Ziai WC, Muschelli J, Thompson CB, Keyl PM, Lane K, Shao S, Hanley DF: Factors affecting clot lysis rates in patients with spontaneous intraventricular hemorrhage. Stroke 43(5):1234-9, 2012.

Neofytos D, Lombardi LR, Shields RK, Ostrander D, Warren L, Nguyen MH, Thompson CB, Marr KA: Administration of voriconazole in patients with renal dysfunction. Clinical Infectious Diseases 54(7):913-21, 2012.

Ziai WC, Melnychuk E, Thompson CB, Awad I, Lane K, Hanley DF: Occurrence and impact of intracranial pressure elevation during treatment of severe intraventricular hemorrhage. Critical Care Medicine 40(5):1601-8, 2012.

Barnett DJ, Thompson CB, Errett NA, Semon NL, Anderson MK, Ferrell JL, Freiheit JM, Hudson R, Koch MM, McKee M, Mejia-Echeverry A, Spitzer J, Balicer RD, Links JM: Determinants of emergency response willingness in the local public health workforce by jurisdictional and scenario patterns: a cross-sectional survey. BMC Public Health 12(1):164, 2012.

Lewin JJ 3rd, LeDroux SN, Shermock KM, Thompson CB, Goodwin HE, Mirski EA, Gill RS, Mirski MA: Validity and reliability of The Johns Hopkins Adapted Cognitive Exam for critically ill patients. Critical Care Medicine 40(1):139-44, 2012.

Aboumatar H, Ristaino P, Davis RO, Thompson CB, Maragakis L, Cosgrove S, Rosenstein B, Perl TM: Infection prevention promotion program based on the PRECEDE model: improving hand hygiene behaviors among healthcare personnel. Infection Control and Hospital Epidemiology 33(2):144-51, 2012.

Diaz Voss Varela DA, Malik MU, Thompson CB, Cummings CW, Bhatti NI, Tufano RP: Comprehensive assessment of thyroidectomy skills development: A pilot project. Laryngoscope 122(1):103-9, 2012.

Herrick DB, Ziai WC, Thompson CB, Lane K, McBee NA, Hanley DF: Systemic hematologic status following intraventricular recombinant tissue-type plasminogen activator for intraventricular hemorrhage: the CLEAR IVH Study Group. Stroke 42(12):3631-3, 2011.

Bembea MM, Savage W, Strouse JJ, Schwartz JM, Graham E, Thompson CB, Everett A: Glial fibrillary acidic protein as a brain injury biomarker in children undergoing extracorporeal membrane oxygenation. Pediatric Critical Care Medicine 12(5):572-9, 2011.

Loffroy R, Lin M, Thompson C, Harsha A, Rao P: A comparison of the results of arterial embolization for bleeding and non-bleeding gastroduodenal ulcers. Acta Radiologica 52(10):1076-82, 2011.

Trent M, Lehmann HP, Qian Q, Thompson CB, Ellen JM, Frick KD: Adolescent and parental utilities for the health states associated with pelvic inflammatory disease. Sexually Transmitted Infections 87(7):583-7, 2011.

Watson CM, Barnett DJ, Thompson CB, Hsu EB, Catlett CL, Gwon HS, Semon NL, Balicer RD, Links JM: Characterizing public health emergency perceptions and influential modifiers of willingness to respond among pediatric healthcare staff. American Journal of Disaster Medicine 6(5):299-308, 2011.

Balicer RD, Catlett CL, Barnett DJ, Thompson CB, Hsu EB, Morton MJ, Semon NL, Watson CM, Gwon HS, Links JM: Characterizing hospital workers' willingness to respond to a radiological event. PLoS One 6(10):e25327, 2011.

Monitto CL, Kost-Byerly S, White E, Lee CK, Rudek MA, Thompson C, Yaster M: The optimal dose of prophylactic intravenous naloxone in ameliorating opioid-induced side effects in children receiving intravenous patient-controlled analgesia morphine for moderate to severe pain: a dose finding study. Anesthesia and Analgesia 113(4):834-42, 2011.

Mirski MA, Lewin JJ 3rd, Ledroux S, Thompson C, Murakami P, Zink EK, Griswold M: Cognitive improvement during continuous sedation in critically ill, awake and responsive patients: the Acute Neurological ICU Sedation Trial (ANIST). Intensive Care Medicine 36(9):1505-13, 2010.

Mirski MA, LeDroux SN, Lewin JJ 3rd, Thompson CB, Mirski KT, GriswoldM: Validity and reliability of an intuitive conscious sedation scoring tool: the nursing instrument for the communication of sedation. Critical Care Medicine 38(8):1674-84, 2010.

Balicer RD, Barnett DJ, Thompson CB, Hsu EB, Catlett CL, Watson CM, Semon NL, Gwon HS, Links JM: Characterizing hospital workers' willingness to report to duty in an influenza pandemic through threat- and efficacy-based assessment. BMC Public Health 10(1):436, 2010.

Shapiro JR, Thompson CB, Wu Y, Nunes M, Gillen C: Bone mineral density and fracture rate in response to intravenous and oral bisphosphonates in adult osteogenesis imperfecta. Calcified Tissue International 87(2):120-9, 2010.

Barnett DJ, Levine R, Thompson CB, Wijetunge GU, Oliver AL, Bentley MA, Neubert PD, Pirrallo RG, Links JM, Balicer RD: Gauging U.S. emergency medical services workers' willingness to respond to pandemic influenza using a threat- and efficacy-based assessment framework. PLoS One 5(3):e9856, 2010.

Griffith K, Wenzel J, Shang J, Thompson C, Stewart K, Mock V: Impact of a walking intervention on cardiorespiratory fitness, self-reported physical function, and pain in patients undergoing treatment for solid tumors. Cancer 115(20):4874-84, 2009.

Barnett DJ, Balicer RD, Thompson CB, Storey JD, Omer SB, Semon NL, Bayer S, Cheek LV, Gateley KW, Lanza KM, Norbin JA, Slemp CC, Links JM: Assessment of local public health workers' willingness to respond to pandemic influenza through application of the extended parallel process model. PLoS One 4(7):e6365, 2009.

Weaver VM, Griswold M, Todd AC, Jaar BG, Ahn KD, Thompson CB, Lee BK: Longitudinal associations between lead dose and renal function in lead workers. Environmental Research 109(1):101-7, 2009.

 

 

Richard Thompson  Description: C:\Users\margo\my_doc\My Web Sites\Publication\UP_AR~11.gif(go to top of document)

Ziai WC, Tuhrim S, Lane K, McBee N, Lees K, Dawson J, Butcher K, Vespa P, Wright DW, Keyl PM, Mendelow AD, Kase C, Wijman C, Lapointe M, John S, Thompson R, Thompson C, Mayo S, Reilly P, Janis S, Awad I, Hanley DF, CLEAR III Investigators: A multicenter, randomized, double-blinded, placebo-controlled phase III study of Clot Lysis Evaluation of Accelerated Resolution of Intraventricular Hemorrhage (CLEAR III). Int J Stroke 9(4):536-42, 2014.

Butz AM, Halterman J, Bellin M, Kub J, Tsoukleris M, Frick KD, Thompson RE, Land C, Bollinger ME: Improving preventive care in high risk children with asthma: lessons learned. J Asthma 51(5):498-507, 2014.

Bundy DG, Persing NM, Solomon BS, King TM, Murakami PN, Thompson RE, Engineer LD, Lehmann CU, Miller MR: Improving immunization delivery using an electronic health record: the ImmProve project. Acad Pediatr 13(5):458-65, 2013.

Feikin DR, Kagucia EW, Loo JD, Link-Gelles R, Puhan MA, Cherian T, Levine OS, Whitney CG, O'Brien KL, Moore MR, Serotype Replacement Study Group (includes Thompson R): Serotype-specific changes in invasive pneumococcal disease after pneumococcal conjugate vaccine introduction: a pooled analysis of multiple surveillance sites. PLoS Med 10(9):e1001517, 2013.

Boss EF, Thompson RE: Patient experience in the pediatric otolaryngology clinic: does the teaching setting influence parent satisfaction. Int J Pediatr Otorhinolaryngol 77(1):59-64, 2013.

Boss EF, Thompson RE: Patient experience in outpatient pediatric otolaryngology. Laryngoscope 122(10):2304-10, 2012.

Bundy DG, Muschelli J, Clemens GD, Strouse JJ, Thompson RE, Casella JF, Miller MR: Ambulatory care connections of Medicaid-insured children with sickle cell disease. Pediatric Blood & Cancer 59(5):888-94, 2012.

Leonard BE, Thompson RE, Beecher GC: Human lung cancer risks from radon - part III - evidence of influence of combined bystander and adaptive response effects on radon case-control studies - a microdose analysis. Dose Response 10(3):415-61, 2012.

Boss EF, Thompson RE: Patient satisfaction in otolaryngology: Can academic institutions compete? Laryngoscope 122(5):1000-9, 2012.

Bundy DG, Marsteller JA, Wu AW, Engineer LD, Berenholtz SM, Caughey AH, Silver D, Tian J, Thompson RE, Miller MR, Lehmann CU: Electronic health record-based monitoring of primary care patients at risk of medication-related toxicity. Joint Commission Journal on Quality and Patient Safety 38(5):216-23, 2012.

Dasenbrock HH, Clarke MJ, Thompson RE, Gokaslan ZL, Bydon A: The impact of July hospital admission on outcome after surgery for spinal metastases at academic medical centers in the United States, 2005 to 2008. Cancer 118(5):1429-38, 2012.

Oberlander SE, Wang Y, Thompson R, Lewis T, Proctor LJ, Isbell P, English DJ, Dubowitz H, Litrownik AJ, Black MM: Childhood maltreatment, emotional distress, and early adolescent sexual intercourse: multi-informant perspectives on parental monitoring. Journal of Family Psychology 25(6):885-94, 2011.

Best SR, Ha PK, Blanco RG, Saunders JR Jr, Zinreich ES, Levine MA, Pai SI, Walker M, Trachta J, Ulmer K, Murakami P, Thompson R, Califano JA, Messing BP: Factors associated with pharyngoesophageal stricture in patients treated with concurrent chemotherapy and radiation therapy for oropharyngeal squamous cell carcinoma. Head and Neck 33(12):1727-34, 2011.

Lee MT, Caturegli P, Humphrey RL, Thompson RE, Detrick B: γ/IgG ratio: role in distinguishing monoclonal spikes from fibrinog. Journal of Clinical Laboratory Analysis 25(5):332-6, 2011.

Leonard BE, Thompson RE, Beecher GC: Human lung cancer risks from radon - part I - influence from bystander effects - a microdose analysis. Dose-Response 9(2):243-92, 2011.

Butz AM, Halterman JS, Bellin M, Tsoukleris M, Donithan M, Kub J, Thompson RE, Land CL, Walker J, Bollinger ME: Factors associated with second-hand smoke exposure in young inner-city children with asthma. Journal of Asthma 48(5):449-57, 2011.

Thompson RE: Epidemiological evidence for possible radiation hormesis from radon exposure: a case-control study conducted in Worcester, MA. Dose Response 9(1):59-75, 2011.

Mitter N, Shah A, Yuh D, Dodd-O J, Thompson RE, Cameron D, Hogue CW: Renal injury is associated with operative mortality after cardiac surgery for women and men. Journal of Thoracic and Cardiovascular Surgery 140(6):1367-73, 2010.

Neal AP, Stansfield KH, Worley PF, Thompson RE, Guilarte TR: Lead exposure during synaptogenesis alters vesicular proteins and impairs vesicular release: potential role of NMDA receptor-dependent BDNF signaling. Toxicological Sciences 116(1):249-63, 2010.

Stierer TL, Wright C, George A, Thompson RE, Wu CL, Collop N: Risk assessment of obstructive sleep apnea in a population of patients undergoing ambulatory surgery. Journal of Clinical Sleep Medicine 6(5):467-72, 2010.

Opryszko MC, Majeed SW, Hansen PM, Myers JA, Baba D, Thompson RE, Burnham G: Water and hygiene interventions to reduce diarrhoea in rural Afghanistan: a randomized controlled study. Journal of Water and Health 8(4):687-702, 2010.

Butz A, Kub J, Donithan M, James NT, Thompson RE, Bellin M, Tsoukleris M, Bollinger ME: Influence of caregiver and provider communication on symptom days and medication use for inner-city children with asthma. Journal of Asthma 47(4):478-85, 2010.

Laeeq K, Weatherly RA, Masood H, Thompson RE, Brown DJ, Cummings CW, Bhatti NI: Barriers to the implementation of competency-based education and assessment: a survey of otolaryngology program directors. Laryngoscope 120(6):1152-8, 2010.

Morad AH, Winters BD, Yaster M, Stevens RD, White ED, Thompson RE, Weingart JD, Gottschalk A: Efficacy of intravenous patient-controlled analgesia after supratentorial intracranial surgery: a prospective randomized controlled trial. Journal of Neurosurgery 111(2):343-50, 2009.

Wang JS, Guo M, Montgomery EA, Thompson RE, Cosby H, Hicks L, Wang S, Herman JG, Canto MI: DNA promoter hypermethylation of p16 and APC predicts neoplastic progression in Barrett's esophagus. American Journal of Gastroenterology 104(9):2153-60, 2009.

Nolan MT, Hughes MT, Kub J, Terry PB, Astrow A, Thompson RE, Clawson L, Texeira K, Sulmasy DP: Development and validation of the Family Decision-Making Self-Efficacy Scale. Palliative and Supportive Care 7(3):315-21, 2009.

Hernandez RN, Feinberg RL, Vaurio R, Passanante NM, Thompson RE, Kaufmann WE: Autism spectrum disorder in fragile X syndrome: a longitudinal evaluation. American Journal of Medical Genetics Part A 149A(6):1125-37, 2009.

Stearns JD, Davila-Roman VG, Barzilai B, Thompson RE, Grogan KL, Thomas B, Hogue CW Jr: Prognostic value of troponin I levels for predicting adverse cardiovascular outcomes in postmenopausal women undergoing cardiac surgery. Anesthesia and Analgesia 108(3):719-26, 2009.

Healy ZR, Dinkova-Kostova AT, Wehage SL, Thompson RE, Fahey JW, Talalay P: Precise determination of the erythema response of human skin to ultraviolet radiation and quantification of effects of protectors. Photodermatology Photoimmunology and Photomedicine 25(1):45-50, 2009.

Butz AM, Crocetti M, Thompson RE, Lipkin PH: Promoting reading in children: do reading practices differ in children with developmental problems? Clinical Pediatrics 48(3):275-83, 2009.

Stearns JD, Davila-Roman VG, Barzilai B, Thompson RE, Grogan KL, Thomas B, Hogue CW Jr: Prognostic value of troponin I levels for predicting adverse cardiovascular outcomes in postmenopausal women undergoing cardiac surgery. Anesthesia and Analgesia 108(3):719-26, 2009.

Healy ZR, Dinkova-Kostova AT, Wehage SL, Thompson RE, Fahey JW, Talalay P: Precise determination of the erythema response of human skin to ultraviolet radiation and quantification of effects of protectors. Photodermatology, Photoimmunology, and Photomedicine 25(1):45-50, 2009.

 

Jing Tian  Description: C:\Users\margo\my_doc\My Web Sites\Publication\UP_AR~11.gif (go to top of document)

Brown CH 4th, Savage WJ, Masear CG, Walston JD, Tian J, Colantuoni E, Hogue CW, Frank SM: Odds of transfusion for older adults compared to younger adults undergoing surgery. Anesth Analg 118(6):1168-78, 2014.

Kalyani RR, Tian J, Xue QL, Walston J, Cappola AR, Fried LP, Brancati FL, Blaum CS: Hyperglycemia and incidence of frailty and lower extremity mobility limitations in older women. Journal of the American Geriatrics Society 60(9):1701-7, 2012.

Coudrillier B, Tian J, Alexander S, Myers KM, Quigley HA, Nguyen TD: Biomechanics of the human posterior sclera: age- and glaucoma-related changes measured using inflation testing. Investigative Ophthalmology & Visual Science 53(4):1714-28, 2012.

Bundy DG, Marsteller JA, Wu AW, Engineer LD, Berenholtz SM, Caughey AH, Silver D, Tian J, Thompson RE, Miller MR, Lehmann CU: Electronic health record-based monitoring of primary care patients at risk of medication-related toxicity. Joint Commission Journal on Quality and Patient Safety 38(5):216-23, 2012.

Oglesby E, Quigley HA, Zack DJ, Cone FE, Steinhart MR, Tian J, Pease ME, Kalesnykas G: Semi-automated, quantitative analysis of retinal ganglion cell morphology in mice selectively expressing yellow fluorescent protein. Experimental Eye Research 96(1):107-15, 2012.

Yao X, Hamilton RG, Weng NP, Xue QL, Bream JH, Li H, Tian J, Yeh SH, Resnick B, Xu X, Walston J, Fried LP, Leng SX: Frailty is associated with impairment of vaccine-induced antibody response and increase in post-vaccination influenza infection in community-dwelling older adults. Vaccine 29(31):5015-21, 2011.

Leng SX, Li H, Xue QL, Tian J, Yang X, Ferrucci L, Fedarko N, Fried LP, Semba RD: Association of detectable cytomegalovirus (CMV) DNA in monocytes rather than positive CMV IgG serology with elevated neopterin levels in community-dwelling older adults. Experimental Gerontology 46(8):679-84, 2011.

Gregory PC, Szanton SL, Xue QL, Tian J, Thorpe RJ, Fried LP: Education predicts incidence of preclinical mobility disability in initially high-functioning older women. The Women's Health and Aging Study II. Journals of Gerontology Series A 66(5):577-81, 2011.

Makary MA, Segev DL, Pronovost PJ, Syin D, Bandeen-Roche K, Patel P, Takenaga R, Devgan L, Holzmueller CG, Tian J, Fried LP: Frailty as a predictor of surgical outcomes in older patients. Journal of the American College of Surgeons 210(6):901-8, 2010.

Leng SX, Xue QL, Tian J, Huang Y, Yeh SH, Fried LP: Associations of neutrophil and monocyte counts with frailty in community-dwelling disabled older women: results from the Women's Health and Aging Studies. Experimental Gerontology 44(8):511-6, 2009.

Varadhan R, Chaves PH, Lipsitz LA, Stein PK, Tian J, Windham BG, Berger RD, Fried LP: Frailty and impaired cardiac autonomic control: new insights from principal components aggregation of traditional heart rate variability indices. Journals of Gerontology, Series A 64(6):682-7, 2009.

 



Cristian Tomasetti  Description: C:\Users\margo\my_doc\My Web Sites\Publication\UP_AR~11.gif(go to top of document)

Tomasetti C, Demetri GD, Parmigiani G: Why tyrosine kinase inhibitor resistance is common in advanced gastrointestinal stromal tumors. F1000 Research 2:152, 2013.

Tomasetti C, Vogelstein B, Parmigiani G: Half or more of the somatic mutations in cancers of self-renewing tissues originate prior to tumor initiation. Proc Natl Acad Sci 110(6):1999-2004, 2013.

Tomasetti C: Stochastic modeling of multiple random genetic mutations under the cancer stem cell hypothesis. Math Popul Stud 19(4):200-213, 2012.

Tomasetti C: On the probability of random genetic mutations for various types of tumor growth. Bull Math Biol 74(6):1379-95, 2012.

Tomasetti C: A new hypothesis: imatinib affects leukemic stem cells in the same way it affects all other leukemic cells. Blood Cancer J 1:e19, 2011.

Tomasetti C, Levy D: An elementary approach to modeling drug resistance in cancer. Math Biosci Eng 7(4):905-18, 2010.

Tomasetti C, Levy D: Role of symmetric and asymmetric division of stem cells in developing drug resistance. Proc Natl Acad Sci 107(39):16766-71, 2010.

 

 

James Tonascia  Description: C:\Users\margo\my_doc\My Web Sites\Publication\UP_AR~11.gif(go to top of document)

Bernard CE, Gibbons SJ, Mann IS, Froschauer L, Parkman HP, Harbison S, Abell TL, Snape WJ, Hasler WL, McCallum RW, Sarosiek I, Nguyen LA, Koch KL, Tonascia J, Hamilton FA, Kendrick ML, Shen KR, Pasricha PJ, Farrugia G, NIDDK Gastroparesis Clinical Research Consortium (GpCRC): Association of low numbers of CD206-positive cells with loss of ICC in the gastric body of patients with diabetic gastroparesis. Neurogastroenterol Motil 26(9):1275-84, 2014.

Kozak I, Vaidya V, Van Natta ML, Pak JW, May KP, Thorne JE, Studies of the Ocular Complications of AIDS Research Group (includes Tonascia J): The prevalence and incidence of epiretinal membranes in eyes with inactive extramacular CMV retinitis. Invest Ophthalmol Vis Sci 55(7):4304-12, 2014.

Howrylak JA, Fuhlbrigge AL, Strunk RC, Zeiger RS, Weiss ST, Raby BA, Childhood Asthma Management Program Research Group (includes Tonascia J): Classification of childhood asthma phenotypes and long-term clinical responses to inhaled anti-inflammatory medications. J Allergy Clin Immunol 133(5):1289-300, 2014.

Molleston JP, Schwimmer JB, Yates KP, Murray KF, Cummings OW, Lavine JE, Brunt EM, Scheimann AO, Unalp-Arida A, NASH Clinical Research Network (includes Tonascia J): Histological abnormalities in children with nonalcoholic fatty liver disease and normal or mildly elevated alanine aminotransferase levels. J Pediatr 164(4):707-713.e3, 2014.

Noureddin M, Yates KP, Vaughn IA, Neuschwander-Tetri BA, Sanyal AJ, McCullough A, Merriman R, Hameed B, Doo E, Kleiner DE, Behling C, Loomba R, NASH CRN (includes Tonascia J): Clinical and histological determinants of nonalcoholic steatohepatitis and advanced fibrosis in elderly patients. Hepatology 58(5):1644-54, 2013.

Parkman HP, Van Natta ML, Abell TL, McCallum RW, Sarosiek I, Nguyen L, Snape WJ, Koch KL, Hasler WL, Farrugia G, Lee L, Unalp-Arida A, Tonascia J, Hamilton F, Pasricha PJ: Effect of nortriptyline on symptoms of idiopathic gastroparesis: the NORIG randomized clinical trial. JAMA 310(24):2640-9, 2013.

St-Jules DE, Watters CA, Brunt EM, Wilkens LR, Novotny R, Belt P, Lavine JE, Nonalcoholic Steatohepatitis Clinical Research Network (includes Tonascia J): Estimation of fish and ω-3 fatty acid intake in pediatric nonalcoholic fatty liver disease. J Pediatr Gastroenterol Nutr 57(5):627-33, 2013.

Benzo R, Siemion W, Novotny P, Sternberg A, Kaplan RM, Ries A, Wise R, Martinez F, Utz J, Sciurba F, National Emphysema Treatment Trial Research Group (includes Tonascia J): Factors to inform clinicians about the end of life in severe chronic obstructive pulmonary disease. J Pain Symptom Manage 46(4):491-499.e4, 2013.

Kempen JH, Sugar EA, Jaffe GJ, Acharya NR, Dunn JP, Elner SG, Lightman SL, Thorne JE, Vitale AT, Altaweel MM, Multicenter Uveitis Steroid Treatment (MUST) Trial Research Group (includes Tonascia J): Fluorescein angiography versus optical coherence tomography for diagnosis of uveitic macular edema. Ophthalmology 120(9):1852-9, 2013.

Friedman DS, Holbrook JT, Ansari H, Alexander J, Burke A, Reed SB, Katz J, Thorne JE, Lightman SL, Kempen JH, MUST Research Group (includes Tonascia J): Risk of elevated intraocular pressure and glaucoma in patients with uveitis: results of the multicenter uveitis steroid treatment trial. Ophthalmology 120(8):1571-9, 2013.

Jabs DA, Ahuja A, Van Natta M, Dunn JP, Yeh S, Studies of the Ocular Complications of AIDS Research Group (includes Tonascia J): Comparison of treatment regimens for cytomegalovirus retinitis in patients with AIDS in the era of highly active antiretroviral therapy. Ophthalmology 120(6):1262-70, 2013.

Hoofnagle JH, van Natta ML, Kleiner DE, Clark JM, Kowdley KV, Loomba R, Neuschwander-Tetri BA, Sanyal AJ, Tonascia J, Non-alcoholic Steatohepatitis Clinical Research Network (NASH CRN): Vitamin E and changes in serum alanine aminotransferase levels in patients with non-alcoholic steatohepatitis. Aliment Pharmacol Ther 38(2):134-43, 2013.

Hasler WL, Wilson LA, Parkman HP, Koch KL, Abell TL, Nguyen L, Pasricha PJ, Snape WJ, McCallum RW, Sarosiek I, Farrugia G, Calles J, Lee L, Tonascia J, Unalp-Arida A, Hamilton F: Factors related to abdominal pain in gastroparesis: contrast to patients with predominant nausea and vomiting. Neurogastroenterol Motil 25(5):427-e301, 2013.

Parkman HP, Yates K, Hasler WL, Nguyen L, Pasricha PJ, Snape WJ, Farrugia G, Koch KL, Calles J, Abell TL, Sarosiek I, McCallum RW, Lee L, Unalp-Arida A, Tonascia J, Hamilton F: Cholecystectomy and clinical presentations of gastroparesis. Dig Dis Sci 58(4):1062-73, 2013.

Gangaputra S, Drye L, Vaidya V, Thorne JE, Jabs DA, Lyon AT, Studies of the Ocular Complications of AIDS (SOCA) Research Group (includes Tonascia J): Non-cytomegalovirus ocular opportunistic infections in patients with acquired immunodeficiency syndrome. Am J Ophthalmol 155(2):206-212, 2013.

Kim V, Kretschman DM, Sternberg AL, DeCamp MM Jr, Criner GJ, National Emphysema Treatment Trial Research Group (includes Tonascia J): Weight gain after lung reduction surgery is related to improved lung function and ventilatory efficiency. Am J Respir Crit Care Med 186(11):1109-16, 2012.

Chandra D, Wise RA, Kulkarni HS, Benzo RP, Criner G, Make B, Slivka WA, Ries AL, Reilly JJ, Martinez FJ, Sciurba FC, NETT Research Group (includes Tonascia J): Optimizing the 6-min walk test as a measure of exercise capacity in COPD. Chest 142(6):1545-52, 2012.

Bell LN, Wang J, Muralidharan S, Chalasani S, Fullenkamp AM, Wilson LA, Sanyal AJ, Kowdley KV, Neuschwander-Tetri BA, Brunt EM, McCullough AJ, Bass NM, Diehl AM, Unalp-Arida A, Chalasani N, Nonalcoholic Steatohepatitis Clinical Research Network (includes Tonascia J): Relationship between adipose tissue insulin resistance and liver histology in nonalcoholic steatohepatitis: a pioglitazone versus vitamin E versus placebo for the treatment of nondiabetic patients with nonalcoholic steatohepatitis trial follow-up study. Hepatology 56(4):1311-8, 2012.

Wu AC, Tantisira K, Li L, Fuhlbrigge AL, Weiss ST, Litonjua A, Childhood Asthma Management Program Research Group (includes Tonascia J): Effect of vitamin D and inhaled corticosteroid treatment on lung function in children. Am J Respir Crit Care Med 186(6):508-13, 2012.

Nelson JE, Brunt EM, Kowdley KV, for the Nonalcoholic Steatohepatitis Clinical Research Network (includes Tonascia J): Lower serum hepcidin and greater parenchymal iron in nonalcoholic fatty liver disease patients with C282Y HFE mutation. Hepatology 56(5):1730-1740, 2012.

Loomba R, Abraham M, Unalp A, Wilson L, Lavine J, Doo E, Bass NM, Nonalcoholic Steatohepatitis Clinical Research Network (includes Tonascia J): Association between diabetes, family history of diabetes, and risk of nonalcoholic steatohepatitis and fibrosis. Hepatology 56(3):943-51, 2012.

Faussone-Pellegrini MS, Grover M, Pasricha PJ, Bernard CE, Lurken MS, Smyrk TC, Parkman HP, Abell TL, Snape WJ, Hasler WL, Unalp-Arida A, Nguyen L, Koch KL, Calles J, Lee L, Tonascia J, Hamilton FA, Farrugia G, NIDDK Gastroparesis Clinical Research Consortium (GpCRC): Ultrastructural differences between diabetic and idiopathic gastroparesis. Journal of Cellular & Molecular Medicine 16(7):1573-81, 2012.

Spicher M, Bollers N, Chinn T, Hall A, Plunkett A, Rodgers D, Sundstrom DA, Wilson L, Childhood Asthma Management Program (CAMP) Research Group (includes Tonascia J): Adherence in single-parent households in a long-term asthma clinical trial. Pediatric Nursing 38(4):207-13, 238, 2012.

Grover M, Bernard CE, ..., Tonascia J, et al: Clinical-histological associations in gastroparesis: results from the Gastroparesis Clinical Research Consortium. Neurogastroenterology & Motility 24(6):531-9, e249, 2012.

Suzuki A, Abdelmalek MF, Schwimmer JB, Lavine JE, Scheimann AO, Unalp-Arida A, Yates KP, Sanyal AJ, Guy CD, Diehl AM, Nonalcoholic Steatohepatitis Clinical Research Network (includes Tonascia J): Association between puberty and features of nonalcoholic fatty liver disease. Clinical Gastroenterology & Hepatology 10(7):786-94, 2012.

Tse SM, Kelly HW, Litonjua AA, van Natta ML, Weiss ST, Tantisira KG, Childhood Asthma Management Program Research Group (includes Tonascia J): Corticosteroid use and bone mineral accretion in children with asthma: effect modification by vitamin D. Journal of Allergy & Clinical Immunology 130(1):53-60.e4, 2012.

Kelly HW, Sternberg AL, Lescher R, Fuhlbrigge AL, Williams P, Zeiger RS, Raissy HH, van Natta ML, Tonascia J, Strunk RC, the CAMP Research Group: Effect of inhaled glucocorticoids in childhood on adult height. New England Journal of Medicine 367(10):904-912, 2012.

Sugar EA, Jabs DA, Ahuja A, Thorne JE, Danis RP, Meinert CL, Studies of the Ocular Complications of AIDS Research Group (includes Tonascia J): Incidence of cytomegalovirus retinitis in the era of highly active antiretroviral therapy. American Journal of Ophthalmology 153(6):1016-24, 2012.

Guy CD, Suzuki A, Zdanowicz M, Abdelmalek MF, Burchette J, Unalp A, Diehl AM; NASH CRN (includes Tonascia J): Hedgehog pathway activation parallels histologic severity of injury and fibrosis in human nonalcoholic fatty liver disease. Hepatology 55(6):1711-21, 2012.

Guy CD, Suzuki A, Burchette JL, Brunt EM, Abdelmalek MF, Cardona D, McCall SJ, Unalp A, Belt P, Ferrell LD, Diehl AM, Nonalcoholic Steatohepatitis Clinical Research Network (includes Tonascia J): Costaining for keratins 8/18 plus ubiquitin improves detection of hepatocyte injury in nonalcoholic fatty liver disease. Human Pathology 43(6):790-800, 2012.

Sen HN, Drye LT, Goldstein DA, Larson TA, Merrill PT, Pavan PR, Sheppard JD, Burke A, Srivastava SK, Jabs DA, Multicenter Uveitis Steroid Treatment (MUST) Trial Research Group (includes Tonascia J): Hypotony in patients with uveitis: The Multicenter Uveitis Steroid Treatment (MUST) Trial. Ocular Immunology & Inflammation 20(2):104-12, 2012.

Bambha K, Belt P, Abraham M, Wilson LA, Pabst M, Ferrell L, Unalp-Arida A, Bass N, Nonalcoholic Steatohepatitis Clinical Research Network Research Group (includes Tonascia J): Ethnicity and nonalcoholic fatty liver disease. Hepatology 55(3):769-80, 2012.

Frick KD, Drye LT, Kempen JH, Dunn JP, Holland GN, Latkany P, Rao NA, Sen HN, Sugar EA, Thorne JE, Wang RC, Holbrook JT, Multicenter Uveitis Steroid Treatment-MUST Trial Research Group (includes Tonascia J): Associations among visual acuity and vision- and health-related quality of life among patients in the multicenter uveitis steroid treatment trial. Investigative Ophthalmology & Visual Science 53(3):1169-76, 2012.

Come CE, Divo MJ, San Jose Estepar R, Sciurba FC, Criner GJ, Marchetti N, Scharf SM, Mosenifar Z, Make BJ, Keller CA, Minai OA, Martinez FJ, Han MK, Reilly JJ, Celli BR, Washko GR, NETT Research Group (includes Tonascia J): Lung deflation and oxygen pulse in COPD: results from the NETT randomized trial. Respiratory Medicine 106(1):109-19, 2012.

Vos MB, Colvin R, Belt P, Molleston JP, Murray KF, Rosenthal P, Schwimmer JB, Tonascia J, Unalp A, Lavine JE, On Behalf of the NASH CRN Research Group: Correlation of vitamin E, uric acid, and diet composition with histologic features of pediatric NAFLD. Journal of Pediatric Gastroenterology and Nutrition 54(1):90-96, 2012.

Parkman HP, Yates K, Hasler WL, Nguyen L, Pasricha PJ, Snape WJ, Farrugia G, Koch KL, Calles J, Abell TL, McCallum RW, Lee L, Unalp-Arida A, Tonascia J, Hamilton F, National Institute of Diabetes and Digestive and Kidney Diseases Gastroparesis Clinical Research Consortium: Similarities and differences between diabetic and idiopathic gastroparesis. Clinical Gastroenterology and Hepatology 9(12):1056-64, 2011.

Holbrook JT, Colvin R, van Natta ML, Thorne JE, Bardsley M, Jabs DA, Studies of Ocular Complications of AIDS (SOCA) Research Group (includes Tonascia J): Evaluation of the United States public health service guidelines for discontinuation of anticytomegalovirus therapy after immune recovery in patients with cytomegalovirus retinitis. American Journal of Ophthalmology 152(4):628-637.e1, 2011.

Guilbert TW, Mauger DT, Allen DB, Zeiger RS, Lemanske RF Jr, Szefler SJ, Strunk RC, Bacharier LB, Covar R, Sorkness CA, Taussig LM, Martinez FD, Childhood Asthma Research and Education Network of the National Heart, Lung, and Blood Institute (includes Tonascia J): Growth of preschool children at high risk for asthma 2 years after discontinuation of fluticasone. Journal of Allergy and Clinical Immunology 128(5):956-63.e1-7, 2011.

Horner CC, Mauger D, Strunk RC, Graber NJ, Lemanske RF Jr, Sorkness CA, Szefler SJ, Zeiger RS, Taussig LM, Bacharier LB, Childhood Asthma Research and Education Network of the National Heart, Lung, and Blood Institute (includes Tonascia J): Most nocturnal asthma symptoms occur outside of exacerbations and associate with morbidity. Journal of Allergy and Clinical Immunology 128(5):977-82.e1-2, 2011.

Puhan MA, Chandra D, Mosenifar Z, Ries A, Make B, Hansel NN, Wise RA, Sciurba F, National Emphysema Treatment Trial (NETT) Research Group (includes Tonascia J): The minimal important difference of exercise tests in severe COPD. European Respiratory Journal 37(4):784-90, 2011.

Sezgin E, van Natta ML, Ahuja A, Lyon A, Srivastava S, Troyer JL, O'Brien SJ, Jabs DA, Studies of the Ocular Complications of AIDS Research Group (includes Tonascia J): Association of host genetic risk factors with the course of cytomegalovirus retinitis in patients infected with human immunodeficiency virus. American Journal of Ophthalmology 151(6):999-1006, 2011.

Gangaputra SS, Altaweel MM, Peng Q, Friedman DS, Rao PK, Foster CS, Kim RY, Reed SB, Srivastava SK, Wong IG, Kempen JH, MUST Trial Research Group (includes Tonascia J): Morphologic assessment for glaucoma in the Multicenter Uveitis Steroid Treatment (MUST) trial. Ocular Immunology and Inflammation 19(4):267-74, 2011.

Pasricha PJ, Colvin R, Yates K, Hasler WL, Abell TL, Unalp-Arida A, Nguyen L, Farrugia G, Koch KL, Parkman HP, Snape WJ, Lee L, Tonascia J, Hamilton F: Characteristics of patients with chronic unexplained nausea and vomiting and normal gastric emptying. Clinical Gastroenterology and Hepatology 9(7):567-76.e1-4, 2011.

Parkman HP, Yates KP, Hasler WL, Nguyan L, Pasricha PJ, Snape WJ, Farrugia G, Calles J, Koch KL, Abell TL, McCallum RW, Petito D, Parrish CR, Duffy F, Lee L, Unalp-Arida A, Tonascia J, Hamilton F, NIDDK Gastroparesis Clinical Research Consortium: Dietary intake and nutritional deficiencies in patients with diabetic or idiopathic gastroparesis. Gastroenterology 141(2):486-98, 498.e1-7, 2011.

Hasler WL, Wilson LA, Parkman HP, Nguyen L, Abell TL, Koch KL, Pasricha PJ, Snape WJ, Farrugia G, Lee L, Tonascia J, Unalp-Arida A, Hamilton F, NIDDK Gastroparesis Clinical Research Consortium (GpCRC): Bloating in gastroparesis: severity, impact, and associated factors. American Journal of Gastroenterology 106(8):1492-502, 2011.

Wu AC, Tantisira K, Li L, Schuemann B, Weiss ST, Fuhlbrigge AL; Childhood Asthma Management Program Research Group (includes Tonascia J): Predictors of symptoms are different from predictors of severe exacerbations from asthma in children. Chest 140(1):100-7, 2011.

Grover M, Farrugia G, Lurken MS, Bernard CE, Faussone-Pellegrini MS, Smyrk TC, Parkman HP, Abell TL, Snape WJ, Hasler WL, Unalp-Arida A, Nguyen L, Koch KL, Calles J, Lee L, Tonascia J, Hamilton FA, Pasricha PJ, NIDDK Gastroparesis Clinical Research Consortium (includes Tonascia J): Cellular changes in diabetic and idiopathic gastroparesis. Gastroenterology 140(5):1575-1585.e8, 2011.

Speliotes EK, Yerges-Armstrong LM, Wu J, Hernaez R, Kim LJ, Palmer CD, Gudnason V, Eiriksdottir G, Garcia ME, Launer LJ, Nalls MA, Clark JM, Mitchell BD, Shuldiner AR, Butler JL, Tomas M, Hoffmann U, Hwang SJ, Massaro JM, O'Donnell CJ, Sahani DV, Salomaa V, Schadt EE, Schwartz SM, Siscovick DS; NASH CRN; GIANT Consortium, MAGIC Investigators, Voight BF, Carr JJ, Feitosa MF, Harris TB, Fox CS, Smith AV, Kao WH, Hirschhorn JN, Borecki IB, GOLD Consortium (includes Tonascia J): Genome-wide association analysis identifies variants associated with nonalcoholic fatty liver disease that have distinct effects on metabolic traits. PLoS Genetics 7(3):e1001324, 2011.

Lavine JE, Schwimmer JB, Van Natta ML, Molleston JP, Murray KF, Rosenthal P, Abrams SH, Scheimann AO, Sanyal AJ, Chalasani N, Tonascia J, Unalp A, Clark JM, Brunt EM, Kleiner DE, Hoofnagle JH, Robuck PR, Nonalcoholic Steatohepatitis Clinical Research Network: Effect of vitamin E or metformin for treatment of nonalcoholic fatty liver disease in children and adolescents: the TONIC randomized controlled trial. Journal of the American Medical Association 305(16):1659-68, 2011.

Brunt EM, Kleiner DE, Wilson LA, Belt P, Neuschwander-Tetri BA, NASH Clinical Research Network (CRN) (includes Tonascia J): Nonalcoholic fatty liver disease (NAFLD) activity score and the histopathologic diagnosis in NAFLD: distinct clinicopathologic meanings. Hepatology 53(3):810-20, 2011.

Kistler KD, Brunt EM, Clark JM, Diehl AM, Sallis JF, Schwimmer JB, NASH CRN Research Group (includes Tonascia J): Physical activity recommendations, exercise intensity, and histological severity of nonalcoholic fatty liver disease. American Journal of Gastroenterology 106(3):460-8, 2011.

Parkman HP, Yates K, Hasler WL, Nguyen L, Pasricha PJ, Snape WJ, Farrugia G, Koch KL, Abell TL, McCallum RW, Lee L, Unalp-Arida A, Tonascia J, Hamilton F, National Institute of Diabetes and Digestive and Kidney Diseases Gastroparesis Clinical Research Consortium: Clinical features of idiopathic gastroparesis vary with sex, body mass, symptom onset, delay in gastric emptying, and gastroparesis severity. Gastroenterology 140(1):101-15, 2011.

Juluri R, Vuppalanchi R, Olson J, Unalp A,
Van Natta ML, Cummings OW, Tonascia J, Chalasani N: Generalizability of the nonalcoholic steatohepatitis Clinical Research Network histologic scoring system for nonalcoholic fatty liver disease. Journal of Clinical Gastroenterology 45(1):55-8, 2011.

Hasler WL, Parkman HP, Wilson LA, Pasricha PJ, Koch KL, Abell TL, Snape WJ, Farrugia G, Lee L, Tonascia J, Unalp-Arida A, Hamilton F, NIDDK Gastroparesis Clinical Research Consortium: Psychological dysfunction is associated with symptom severity but not disease etiology or degree of gastric retention in patients with gastroparesis. American Journal of Gastroenterology 105(11):2357-67, 2010.

.Jabs DA, Ahuja A, Van Natta M, Lyon A, Srivastava S, Gangaputra S, Studies of the Ocular Complications of AIDS Research Group (includes Tonascia J): Course of cytomegalovirus retinitis in the era of highly active antiretroviral therapy: five-year outcomes. Ophthalmology 117(11):2152-61, 2010.

Chandra D, Lipson DA, Hoffman EA, Hansen-Flaschen J, Sciurba FC, Decamp MM, Reilly JJ, Washko GR, National Emphysema Treatment Trial Research Group (includes Tonascia J): Perfusion scintigraphy and patient selection for lung volume reduction surgery. American Journal of Respiratory and Critical Care Medicine 182(7):937-46, 2010.

Cohen RT, Raby BA, Van Steen K, Fuhlbrigge AL, Celedon JC, Rosner BA, Strunk RC, Zeiger RS, Weiss ST, Childhood Asthma Management Program Research Group (includes Tonascia J): In utero smoke exposure and impaired response to inhaled corticosteroids in children with asthma. Journal of Allergy and Clinical Immunology 126(3):491-7, 2010.

Puhan MA, Van Natta ML, Palella FJ, Addessi A, Meinert C, Ocular Complications of AIDS Research Group (includes Tonascia J): Excess mortality in patients with AIDS in the era of highly active antiretroviral therapy: temporal changes and risk factors. Clinical Infectious Diseases 51(8):947-56, 2010.

Rabinovitch N, Graber NJ, Chinchilli VM, Sorkness CA, Zeiger RS, Strunk RC, Bacharier LB, Martinez FD, Szefler SJ, Childhood Asthma Research and Education Network of the National Heart, Lung, and Blood Institute (includes Tonascia J): Urinary leukotriene E4/exhaled nitric oxide ratio and montelukast response in childhood asthma. Journal of Allergy and Clinical Immunology 126(3):545-51.e1-4, 2010.

Neuschwander-Tetri BA, Clark JM, Bass NM, Van Natta ML, Unalp-Arida A, Tonascia J, Zein CO, Brunt EM, Kleiner DE, McCullough AJ, Sanyal AJ, Diehl AM, Lavine JE, Chalasani N, Kowdley KV, NASH Clinical Research Network: Clinical, laboratory and histological associations in adults with nonalcoholic fatty liver disease. Hepatology 52(3):913-24, 2010.

Han MK, Wise R, Mumford J, Sciurba F, Criner GJ, Curtis JL, Murray S, Sternberg A, Weinman G, Kazerooni E, Fishman AP, Make B, Hoffman EA, Mosenifar Z, Martinez FJ, NETT Research Group (includes Tonascia J): Prevalence and clinical correlates of bronchoreversibility in severe emphysema. European Respiratory Journal 35(5):1048-56, 2010.

Brehm JM, Schuemann B, Fuhlbrigge AL, Hollis BW, Strunk RC, Zeiger RS, Weiss ST, Litonjua AA, Childhood Asthma Management Program Research Group (includes Tonascia J): Serum vitamin D levels and severe asthma exacerbations in the Childhood Asthma Management Program study. Journal of Allergy and Clinical Immunology 126(1):52-8.e5, 2010.

Abdelmalek MF, Suzuki A, Guy C, Unalp-Arida A, Colvin R, Johnson RJ, Diehl AM, Nonalcoholic Steatohepatitis Clinical Research Network (includes Tonascia J): Increased fructose consumption is associated with fibrosis severity in patients with nonalcoholic fatty liver disease. Hepatology 51(6):1961-71, 2010.

Sanyal AJ, Chalasani N, Kowdley KV, McCullough A, Diehl AM, Bass NM, Neuschwander-Tetri BA, Lavine JE, Tonascia J, Unalp A, Van Natta M, Clark J, Brunt EM, Kleiner DE, Hoofnagle JH, Robuck PR, NASH CRN: Pioglitazone, vitamin E, or placebo for nonalcoholic steatohepatitis. New England Journal of Medicine 362(18):1675-85, 2010.

Giardino ND, Curtis JL, Andrei AC, Fan VS, Benditt JO, Lyubkin M, Naunheim K, Criner G, Make B, Wise RA, Murray SK, Fishman AP, Sciurba FC, Liberzon I, Martinez FJ, NETT Research Group (includes Tonascia J): Anxiety is associated with diminished exercise performance and quality of life in severe emphysema: a cross-sectional study. Respiratory Research 11:29, 2010.

Kistler KD, Molleston J, Unalp A, Abrams SH, Behling C, Schwimmer JB, Nonalcoholic Steatohepatitis Clinical Research Network (NASH CRN) (includes Tonascia J): Symptoms and quality of life in obese children and adolescents with non-alcoholic fatty liver disease. Alimentary Pharmacology & Therapeutics 31(3):396-406, 2010.

Lavine JE, Schwimmer JB, Molleston JP, Scheimann AO, Murray KF, Abrams SH, Rosenthal P, Sanyal AJ, Robuck PR, Brunt EM, Unalp A, Tonascia J, Nonalcoholic Steatohepatitis Clinical Research Network Research Group: Treatment of nonalcoholic fatty liver disease in children: TONIC trial design. Contemporary Clinical Trials 31(1):62-70, 2010.

Washko GR, Martinez FJ, Hoffman EA, Loring SH, Estepar RS, Diaz AA, Sciurba FC, Silverman EK, Han MK, Decamp M, Reilly JJ, National Emphysema Treatment Trial Research Group (includes Tonascia J): Physiological and computed tomographic predictors of outcome from lung volume reduction surgery. American Journal of Respiratory and Critical Care Medicine 181(5):494-500, 2010.

Covar RA, Strunk R, Zeiger RS, Wilson LA, Liu AH, Weiss S, Tonascia J, Spahn JD, Szefler SJ, Childhood Asthma Management Program Research Group: Predictors of remitting, periodic, and persistent childhood asthma. Journal of Allergy and Clinical Immunology 125(2):359-366, 2010.

Shah AG, Lydecker A, Murray K, Tetri BN, Contos MJ, Sanyal AJ, Nash Clinical Research Network (includes Tonascia J): Comparison of noninvasive markers of fibrosis in patients with nonalcoholic fatty liver disease. Clinical Gastroenterology and Hepatology 7(10):1104-12, 2009.

Kim WJ, Silverman EK, Hoffman E, Criner GJ, Mosenifar Z, Sciurba FC, Make BJ, Carey V, Estepar RS, Diaz A, Reilly JJ, Martinez FJ, Washko GR, NETT Research Group (includes Tonascia J): CT metrics of airway disease and emphysema in severe COPD. Chest 136(2):396-404, 2009.

Benzo R, Farrell MH, Chang CC, Martinez FJ, Kaplan R, Reilly J, Criner G, Wise R, Make B, Luketich J, Fishman AP, Sciurba FC, NETT Research Group (includes Tonascia J): Integrating health status and survival data: the palliative effect of lung volume reduction surgery. American Journal of Respiratory and Critical Care Medicine 180(3):239-46, 2009.

Woodworth GF, Baird CJ, Garces-Ambrossi G, Tonascia J, Tamargo RJ: Inaccuracy of the administrative database: comparative analysis of two databases for the diagnosis and treatment of intracranial aneurysms. Neurosurgery 65(2):251-6, 2009.

David K, Kowdley KV, Unalp A, Kanwal F, Brunt EM, Schwimmer JB, NASH CRN Research Group (includes Tonascia J): Quality of life in adults with nonalcoholic fatty liver disease: baseline data from the nonalcoholic steatohepatitis clinical research network. Hepatology 49(6):1904-12, 2009.

Rivera-Spoljaric K, Chinchilli VM, Camera LJ, Zeiger RS, Paul IM, Phillips BR, Taussig LM, Strunk RC, Bacharier LB, Childhood Asthma Research and Education (CARE) Network (includes Tonascia J): Signs and symptoms that precede wheezing in children with a pattern of moderate-to-severe intermittent wheezing. Journal of Pediatrics 154(6):877-81, 2009.

Bacharier LB, Guilbert TW, Zeiger RS, Strunk RC, Morgan WJ, Lemanske RF Jr, Moss M, Szefler SJ, Krawiec M, Boehmer S, Mauger D, Taussig LM, Martinez FD, Childhood Asthma Research and Education Network of the National Heart, Lung, and Blood Institute (includes Tonascia J): Patient characteristics associated with improved outcomes with use of an inhaled corticosteroid in preschool children at risk for asthma. Journal of Allergy and Clinical Immunology 123(5):1077-82, 2009.

Strunk RC, Sternberg AL, Szefler SJ, Zeiger RS, Bender B, Tonascia J, Childhood Asthma Management Program (CAMP) Research Group: Long-term budesonide or nedocromil treatment, once discontinued, does not alter the course of mild to moderate asthma in children and adolescents. Journal of Pediatrics 154(5):682-7, 2009.

Vuppalanchi R, Unalp A, Van Natta ML, Cummings OW, Sandrasegaran KE, Hameed T, Tonascia J, Chalasani N: Effects of liver biopsy sample length and number of readings on sampling variability in nonalcoholic fatty liver disease. Clinical Gastroenterology and Hepatology 7(4):481-6, 2009.

Chalasani NP, Sanyal AJ, Kowdley KV, Robuck PR, Hoofnagle J, Kleiner DE, Unalp A, Tonascia J, NASH CRN Research Group: Pioglitazone versus vitamin E versus placebo for the treatment of non-diabetic patients with non-alcoholic steatohepatitis: PIVENS trial design. Contemporary Clinical Trials 30(1):88-96, 2009.

 

Jiangxia Wang  Description: C:\Users\margo\my_doc\My Web Sites\Publication\UP_AR~11.gif (go to top of document)

Zhang ML, Chon BH, Wang J, Smits G, Lin SC, Ianchulev T, Jampel HD: Single vs multiple intraocular pressure measurements in glaucoma surgical trials. JAMA Ophthalmol 132(8):956-62, 2014.

Yohannan J, He B, Wang J, Greene G, Schein Y, Mkocha H, Munoz B, Quinn TC, Gaydos C, West SK: Geospatial distribution and clustering of chlamydia trachomatis in communities undergoing mass azithromycin treatment. Invest Ophthalmol Vis Sci 55(7):4144-50, 2014.

Puri S, Robinson SB, Wang J, Sikder S: Vision-related impact on quality of life in an elderly patient population after corneal transplantation. Cornea 33(2):119-24, 2014.

McCoy AN, Quigley HA, Wang J, Miller NR, Subramanian PS, Ramulu PY, Boland MV: Development and validation of an improved neurological hemifield test to identify chiasmal and postchiasmal lesions by automated perimetry. Invest Ophthalmol Vis Sci 55(2):1017-23, 2014.

Seager FE, Wang J, Arora KS, Quigley HA: The effect of scleral spur identification methods on structural measurements by anterior segment optical coherence tomography. J Glaucoma 23(1):e29-38, 2014.

Koo JJ, Wang J, Thompson CB, Merbs SL, Grant MP: Impact of hospital volume and specialization on the cost of orbital trauma care. Ophthalmology 120(12):2741-6, 2013.

Burkholder BM, Wang J, Dunn JP, Nguyen QD, Thorne JE: Postoperative outcomes after fluocinolone acetonide implant surgery in patients with birdshot chorioretinitis and other types of posterior and panuveitis. Retina 33(8):1684-93, 2013.

Kashiwabuchi FK, Khan YA, Rodrigues MW Jr, Wang J, McDonnell PJ, Daoud YJ: Seidel and India ink tests assessment of different clear cornea side-port incision configurations. Graefes Arch Clin Exp Ophthalmol 251(8):1961-5, 2013.

Perritt JB, Burke A, Jamshidli R, Wang J, Fox M: Contraception counseling, pregnancy intention and contraception use in women with medical problems: an analysis of data from the Maryland Pregnancy Risk Assessment Monitoring System (PRAMS). Contraception 88(2):263-8, 2013.

Cutler N, Balicki M, Finkelstein M, Wang J, Gehlbach P, McGready J, Iordachita I, Taylor R, Handa JT: Auditory force feedback substitution improves surgical precision during simulated ophthalmic surgery. Invest Ophthalmol Vis Sci 54(2):1316-24, 2013.

Bell LN, Wang J, Muralidharan S, Chalasani S, Fullenkamp AM, Wilson LA, Sanyal AJ, Kowdley KV, Neuschwander-Tetri BA, Brunt EM, McCullough AJ, Bass NM, Diehl AM, Unalp-Arida A, Chalasani N, for the Nonalcoholic Steatohepatitis Clinical Research Network: Relationship between adipose tissue insulin resistance and liver histology in nonalcoholic steatohepatitis: A pioglitazone versus vitamin E versus placebo for the treatment of nondiabetic patients with nonalcoholic steatohepatitis trial follow-up study. Hepatology 56(4):1311-1318, 2012.

Eghrari AO, McGlumphy EJ, Iliff BW, Wang J, Emmert D, Riazuddin SA, Katsanis N, Gottsch JD: Prevalence and severity of Fuchs corneal dystrophy in Tangier Island. American Journal of Ophthalmology 153(6):1067-72, 2012.

Kovell LC, Wang J, Ishman SL, Zeitlin PL, Boss EF: Cystic fibrosis and sinusitis in children: outcomes and socioeconomic status. Otolaryngology --Head and Neck Surgery 145(1):146-53, 2011.

Riazuddin SA, McGlumphy EJ, Yeo WS, Wang J, Katsanis N, Gottsch JD: Replication of the TCF4 intronic variant in late-onset Fuchs corneal dystrophy and evidence of independence from the FCD2 locus. Investigative Ophthalmology & Visual Science 52(5):2825-9, 2011.

Wolle MA, Cassard SD, Gower EW, Munoz BE, Wang J, Alemayehu W, West SK: Impact of trichiasis surgery on physical functioning in Ethiopian patients: STAR Trial. American Journal of Ophthalmology 151(5):850-7, 2011.

Kolmakova A, Wang J, Brogan R, Chaffin C, Rodriguez A: Deficiency of scavenger receptor class B type I negatively affects progesterone secretion in human granulosa cells. Endocrinology 151(11):5519-27, 2010.

McGlumphy EJ, Yeo WS, Riazuddin SA, Al-Saif A, Wang J, Eghrari AO, Meadows DN, Emmert DG, Katsanis N, Gottsch JD: Age-severity relationships in families linked to FCD2 with retroillumination photography. Investigative Ophthalmology & Visual Science 51(12):6298-302, 2010.

Ashikaga H, Leclercq C, Wang J, Kass DA, McVeigh ER: Hemodynamic improvement in cardiac resynchronization does not require improvement in left ventricular rotation mechanics: three-dimensional tagged MRI analysis. Circulation. Cardiovascular Imaging 3(4):456-63, 2010.

 

Mei-Cheng Wang  Description: C:\Users\margo\my_doc\My Web Sites\Publication\UP_AR~11.gif(go to top of document)

Albert M, Soldan A, Gottesman R, McKhann G, Sacktor N, Farrington L, Grega M, Turner R, Lu Y, Li S, Wang MC, Selnes O: Cognitive changes preceding clinical symptom onset of mild cognitive impairment and relationship to ApoE genotype. Curr Alzheimer Res 11(8):773-84, 2014.

Wang MC, Huang CY: Statistical inference methods for recurrent event processes with shape and size parameters. Biometrika 101(3):553-566, 2014.

Zhu H, Wang MC: Nonparametric inference on bivariate survival data with interval sampling: association estimation and testing. Biometrika 101(3):519-533, 2014.

Muzaale AD, Massie AB, Wang MC, Montgomery RA, McBride MA, Wainright JL, Segev DL: Risk of end-stage renal disease following live kidney donation. JAMA 311(6):579-86, 2014.

Wang G, Divall S, Radovick S, Paige D, Ning Y, Chen Z, Ji Y, Hong X, Walker SO, Caruso D, Pearson C, Wang MC, Zuckerman B, Cheng TL, Wang X: Preterm birth and random plasma insulin levels at birth and in early childhood. JAMA 311(6):587-96, 2014.

Pettigrew C, Soldan A, Li S, Lu Y, Wang MC, Selnes OA, Moghekar A, O'Brien R, Albert M, The Biocard Research Team: Relationship of cognitive reserve and APOE status to the emergence of clinical symptoms in preclinical Alzheimer's disease. Cogn Neurosci 4(3-4):136-42, 2013.

Li S, Okonkwo O, Albert M, Wang MC: Variation in variables that predict progression from MCI to AD dementia over duration of follow-up. Am J Alzheimers Dis 2(1):12-28, 2013.

Miller MI, Younes L, Ratnanather JT, Brown T, Trinh H, Postell E, Lee DS, Wang MC, Mori S, O'Brien R, Albert M, BIOCARD Research Team: The diffeomorphometry of temporal lobe structures in preclinical Alzheimer's disease. Neuroimage Clin 3:352-60, 2013.

Moghekar A, Li S, Lu Y, Li M, Wang MC, Albert M, O'Brien R, BIOCARD Research Team: CSF biomarker changes precede symptom onset of mild cognitive impairment. Neurology 81(20):1753-8, 2013.

Soldan A, Pettigrew C, Li S, Wang MC, Moghekar A, Selnes OA, Albert M, O'Brien R, BIOCARD Research Team: Relationship of cognitive reserve and cerebrospinal fluid biomarkers to the emergence of clinical symptoms in preclinical Alzheimer's disease. Neurobiol Aging 34(12):2827-34, 2013.

Shields WC, McDonald EM, McKenzie L, Wang MC, Walker AR, Gielen AC: Using the pediatric emergency department to deliver tailored safety messages: results of a randomized controlled trial. Pediatr Emerg Care 29(5):628-34, 2013.

Wang MC, Li S: ROC analysis for multiple markers with tree-based classification. Lifetime Data Anal 19(2):257-77, 2013.

Wang MC, Li S: Bivariate marker measurements and ROC analysis. Biometrics 68(4):1207-18, 2012.

Cheng YJ, Wang MC: Estimating propensity scores and causal survival functions using prevalent survival data. Biometrics 68(3):707-16, 2012.

Carone M, Asgharian M, Wang MC: Nonparametric incidence estimation from prevalent cohort survival data. Biometrika 99(3): 599-613, 2012.

Chan KC, Wang MC: Estimating incident population distribution from prevalent data. Biometrics 68(2):521-31, 2012.

Zhu H, Wang MC: Analysing bivariate survival data with interval sampling and application to cancer epidemiology. Biometrika 99(2):345-361, 2012.

Thoma ME, Gray RH, Kiwanuka N, Wang MC, Sewankambo N, Wawer MJ: The natural history of bacterial vaginosis diagnosed by gram stain among women in Rakai, Uganda. Sexually Transmitted Diseases 38(11):1040-1045, 2011.

Thoma ME, Gray RH, Kiwanuka N, Aluma S, Wang MC, Sewankambo N, Wawer MJ: Longitudinal changes in vaginal microbiota composition assessed by gram stain among never sexually active pre- and postmenarcheal adolescents in Rakai, Uganda. Journal of Pediatric and Adolescent Gynecology 24(1):42-7, 2011.

Thoma ME, Gray RH, Kiwanuka N, Aluma S, Wang MC, Sewankambo N, Wawer MJ: The short-term variability of bacterial vaginosis diagnosed by Nugent Gram stain criteria among sexually active women in Rakai, Uganda. Sexually Transmitted Diseases 38(2):111-6, 2011.

Kong X, Gray RH, Moulton LH, Wawer M, Wang MC: A modeling framework for the analysis of HPV incidence and persistence: a semi-parametric approach for clustered binary longitudinal data analysis. Statistics in Medicine 29(28):2880-9, 2010.

Chan KCG, Wang MC: Backward estimation of stochastic processes with failure events as time origins. Annals of Applied Statistics 4(3):1602-1620, 2010.

Luo X, Wang MC, Huang CY: A comparison of various rate functions of a recurrent event process in the presence of a terminal event. Statistical Methods in Medical Research 19(2):167-82, 2010.

Kong X, Archer KJ, Moulton LH, Gray RH, Wang MC: Parametric frailty models for clustered data with arbitrary censoring: application to effect of male circumcision on HPV clearance. BMC Medical Research Methodology 10(1):40, 2010.

Sorock GS, Quigley PA, Rutledge MK, Taylor J, Luo X, Foulis P, Wang MC, Varadhan R, Bellantoni M, Baker SP: Central nervous system medication changes and falls in nursing home residents. Geriatric Nursing 30(5):334-40, 2009.

Lu D, Hoory T, Monie A, Wu A, Wang MC, Hung CF: Treatment with demethylating agent, 5-aza-2'-deoxycytidine enhances therapeutic HPV DNA vaccine potency. Vaccine 27(32):4363-9, 2009.

Mielke MM, Kozauer NA, Chan KC, George M, Toroney J, Zerrate M, Bandeen-Roche K, Wang MC, Vanzijl P, Pekar JJ, Mori S, Lyketsos CG, Albert M: Regionally-specific diffusion tensor imaging in mild cognitive impairment and Alzheimer's disease. NeuroImage 46(1):47-55, 2009.

Lin Z, Bazzaro M, Wang MC, Chan KC, Peng S, Roden RB: Combination of proteasome and HDAC inhibitors for uterine cervical cancer treatment. Clinical Cancer Research 15(2):570-7, 2009.

Tseng CW, Trimble C, Zeng Q, Monie A, Alvarez RD, Huh WK, Hoory T, Wang MC, Hung CF, Wu TC: Low-dose radiation enhances therapeutic HPV DNA vaccination in tumor-bearing hosts. Cancer Immunology, Immunotherapy 58(5):737-48, 2009.

 

 

 

Sarah Wheelan  Description: C:\Users\margo\my_doc\My Web Sites\Publication\UP_AR~11.gif (go to top of document)

Bai B, Yegnasubramanian S, Wheelan SJ, Laiho M: RNA-seq of the nucleolus reveals abundant SNORD44-derived small RNAs. PLoS One 9(9):e107519, 2014.

Carbone L, Harris RA, Gnerre S, Veeramah KR, ..., Wheelan SJ, et al: Gibbon genome and the fast karyotype evolution of small apes. Nature 513(7517):195-201, 2014.

Debeljak M, Freed DN, Welch JA, Haley L, Beierl K, Iglehart BS, Pallavajjala A, Gocke CD, Leffell MS, Lin MT, Pevsner J, Wheelan SJ, Eshleman JR: Haplotype counting by next-generation sequencing for ultrasensitive human DNA detection. J Mol Diagn 16(5):495-503, 2014.

Cochran RL, Cravero K, Chu D, Erlanger B, Toro PV, Beaver JA, Zabransky DJ, Wong HY, Cidado J, Croessmann S, Parsons HA, Kim M, Wheelan SJ, Argani P, Park BH: Analysis of BRCA2 loss of heterozygosity in tumor tissue using droplet digital polymerase chain reaction. Hum Pathol 45(7):1546-50, 2014.

Lin MT, Mosier SL, Thiess M, Beierl KF, Debeljak M, Tseng LH, Chen G, Yegnasubramanian S, Ho H, Cope L, Wheelan SJ, Gocke CD, Eshleman JR: Clinical validation of KRAS, BRAF, and EGFR mutation detection using next-generation sequencing. Am J Clin Pathol 141(6):856-66, 2014.

Wu H, Luo J, Yu H, Rattner A, Mo A, Wang Y, Smallwood PM, Erlanger B, Wheelan SJ, Nathans J: Cellular resolution maps of x chromosome inactivation: implications for neural development, function, and disease. Neuron 81(1):103-19, 2014.

Teng X, Dayhoff-Brannigan M, Cheng WC, Gilbert CE, Sing CN, Diny NL, Wheelan SJ, Dunham MJ, Boeke JD, Pineda FJ, Hardwick JM: Genome-wide consequences of deleting any single gene. Mol Cell 52(4):485-94, 2013.

Gnanakkan VP, Jaffe AE, Dai L, Fu J, Wheelan SJ, Levitsky HI, Boeke JD, Burns KH: TE-array--a high throughput tool to study transposon transcription. BMC Genomics 14(1):869, 2013.

Rodi N, Zampella JG, Cornish TC, Wheelan SJ, Burns KH: Translocation junctions in TCF3-PBX1 acute lymphoblastic leukemia/lymphoma cluster near transposable elements. Mob DNA 4(1):22, 2013.

Alder JK, Parry EM, Yegnasubramanian S, Wagner CL, Lieblich LM, Auerbach R, Auerbach AD, Wheelan SJ, Armanios M: Telomere phenotypes in females with heterozygous mutations in the dyskeratosis Congenita 1 (DKC1) gene. Hum Mutat 34(11):1481-1485, 2013.

Babcock JJ, Du F, Xu K, Wheelan SJ, Li M: Integrated analysis of drug-induced gene expression profiles predicts novel hERG inhibitors. PLoS One 8(7): e69513, 2013.

O'Donnell KA, An W, Schrum CT, Wheelan SJ, Boeke JD: Controlled insertional mutagenesis using a LINE-1 (ORFeus) gene-trap mouse model. Proc Natl Acad Sci U S A 110(29):E2706-13, 2013.

Li X, Burnight ER, Cooney AL, Malani N, Brady T, Sander JD, Staber J, Wheelan SJ, Joung JK, McCray PB Jr, Bushman FD, Sinn PL, Craig NL: piggyBac transposase tools for genome engineering. Proc Natl Acad Sci 110(25):E2279-87, 2013.

Cheng WC, Kingsbury TJ, Wheelan SJ, Civin CI: A simple high-throughput technology enables gain-of-function screening of human microRNAs. Biotechniques 54(2):77-86, 2013.

Solyom S, Ewing AD, Rahrmann EP, Doucet T, Nelson HH, Burns MB, Harris RS, Sigmon DF, Casella A, Erlanger B, Wheelan S, Upton KR, Shukla R, Faulkner GJ, Largaespada DA, Kazazian HH Jr: Extensive somatic L1 retrotransposition in colorectal tumors. Genome Res 22(12):2328-38, 2012.

Das S, Ferlito M, Kent OA, Fox-Talbot K, Wang R, Liu D, Raghavachari N, Yang Y, Wheelan SJ, Murphy E, Steenbergen C: Nuclear miRNA regulates the mitochondrial genome in the heart. Circulation Research 110(12):1596-603, 2012.

Mularoni L, Zhou Y, Bowen T, Gangadharan S, Wheelan SJ, Boeke JD: Retrotransposon Ty1 integration targets specifically positioned asymmetric nucleosomal DNA segments in tRNA hotspots. Genome Research 22(4):693-703, 2012.

O'Donnell KA, Keng VW, York B, Reineke EL, Seo D, Fan D, Silverstein KA, Schrum CT, Xie WR, Mularoni L, Wheelan SJ, Torbenson MS, O'Malley BW, Largaespada DA, Boeke JD: A Sleeping Beauty mutagenesis screen reveals a tumor suppressor role for Ncoa2/Src-2 in liver cancer. Proceedings of the National Academy of Sciences 109(21):E1377-86, 2012.

Favorov A, Mularoni L, Cope LM, Medvedeva Y, Mironov AA, Makeev VJ, Wheelan SJ: Exploring massive, genome scale datasets with the GenometriCorr package. PLoS Computational Biology 8(5):e1002529, 2012.

Jamonnak N, Creamer TJ, Darby MM, Schaughency P, Wheelan SJ, Corden JL: Yeast Nrd1, Nab3, and Sen1 transcriptome-wide binding maps suggest multiple roles in post-transcriptional RNA processing. RNA 17(11):2011-25, 2011.

Creamer TJ, Darby MM, Jamonnak N, Schaughency P, Hao H, Wheelan SJ, Corden JL: Transcriptome-wide binding sites for components of the Saccharomyces cerevisiae non-poly(A) termination pathway: Nrd1, Nab3, and Sen1. PLoS Genetics 7(10):e1002329, 2011.

Tyekucheva S, Yolken RH, McCombie WR, Parla J, Kramer M, Wheelan SJ, Sabunciyan S: Establishing the baseline level of repetitive element expression in the human cortex. BMC Genomics 12(1):495, 2011.

Hong S, Skaist AM, Wheelan SJ, Friedman AD: AP-1 protein induction during monopoiesis favors C/EBP: AP-1 heterodimers over C/EBP homodimerization and stimulates FosB transcription. Journal of Leukocyte Biology 90(4):643-51, 2011.

Sobreira NL, Gnanakkan V, Walsh M, Marosy B, Wohler E, Thomas G, Hoover-Fong JE, Hamosh A, Wheelan SJ, Valle D: Characterization of complex chromosomal rearrangements by targeted capture and next-generation sequencing. Genome Research 21(10):1720-7, 2011.

Niranjan TS, Adamczyk A, Bravo HC, Taub MA, Wheelan SJ, Irizarry R, Wang T: Effective detection of rare variants in pooled DNA samples using Cross-pool tailcurve analysis. Genome Biology 12(9):R93, 2011.

Murthy S, Hayward GS, Wheelan S, Forman MS, Ahn JH, Pass RF, Arav-Boger R: Detection of a single identical cytomegalovirus (CMV) strain in recently seroconverted young women. PLoS One 6(1):e15949, 2011.

Gangadharan S, Mularoni L, Fain-Thornton J, Wheelan SJ, Craig NL: DNA transposon Hermes inserts into DNA in nucleosome-free regions in vivo. Proceedings of the National Academy of Sciences 107(51):21966-72, 2010.

Morisot S, Wayne AS, Bohana-Kashtan O, Kaplan IM, Gocke CD, Hildreth R, Stetler-Stevenson M, Walker RL, Davis S, Meltzer PS, Wheelan SJ, Brown P, Jones RJ, Shultz LD, Civin CI: High frequencies of leukemia stem cells in poor-outcome childhood precursor-B acute lymphoblastic leukemias. Leukemia 24(11):1859-66, 2010.

Huang CR, Schneider AM, Lu Y, Niranjan T, Shen P, Robinson MA, Steranka JP, Valle D, Civin CI, Wang T, Wheelan SJ, Ji H, Boeke JD, Burns KH: Mobile interspersed repeats are major structural variants in the human genome. Cell 141(7):1171-82, 2010.

Lin MT, Tseng LH, Kamiyama H, Kamiyama M, Lim P, Hidalgo M, Wheelan S, Eshleman J: Quantifying the relative amount of mouse and human DNA in cancer xenografts using species-specific variation in gene length. Biotechniques 48(3):211-8, 2010.

 

 

Amy Wozniak Description: C:\Users\margo\my_doc\My Web Sites\Publication\UP_AR~11.gif (go to top of document)

Johnston MV, Ammanuel S, O'Driscoll C, Wozniak A, Naidu S, Kadam SD: Twenty-four hour quantitative-EEG and in-vivo glutamate biosensor detects activity and circadian rhythm dependent biomarkers of pathogenesis in Mecp2 null mice. Front Syst Neurosci 8:118, 2014.

Needham DM, Wozniak AW, Hough CL, Morris PE, Dinglas VD, Jackson JC, Mendez-Tellez PA, Shanholtz C, Ely EW, Colantuoni E, Hopkins RO: Risk factors for physical impairment after acute lung injury in a national, multicenter study. Am J Respir Crit Care Med 189(10):1214-24, 2014.

Carol H, Gorlick R, Kolb EA, Morton CL, Manesh DM, Keir ST, Reynolds CP, Kang MH, Maris JM, Wozniak A, Hickson I, Lyalin D, Kurmasheva RT, Houghton PJ, Smith MA, Lock R: Initial testing (stage 1) of the histone deacetylase inhibitor, quisinostat (JNJ-26481585), by the Pediatric Preclinical Testing Program. Pediatr Blood Cancer 61(2):245-52, 2014.

Needham DM, Dinglas VD, Morris PE, Jackson JC, Hough CL, Mendez-Tellez PA, Wozniak AW, Colantuoni E, Ely EW, Rice TW, Hopkins RO, NIH NHLBI ARDS Network: Physical and cognitive performance of patients with acute lung injury 1 year after initial trophic versus full enteral feeding. EDEN Trial Follow-up. Am J Respir Crit Care Med 188(5):567-76, 2013.

Stevenson JE, Colantuoni E, Bienvenu OJ, Sricharoenchai T, Wozniak A, Shanholtz C, Mendez-Tellez PA, Needham DM: General anxiety symptoms after acute lung injury: predictors and correlates. J Psychosom Res 75(3):287-93, 2013.

Leary SE, Wozniak AW, Billups CA, Wu J, McPherson V, Neel MD, Rao BN, Daw NC: Survival of pediatric patients after relapsed osteosarcoma: The St. Jude Children's Research Hospital experience. Cancer 119(14):2645-53, 2013.

Needham DM, Dinglas VD, Bienvenu OJ, Colantuoni E, Wozniak AW, Rice TW, Hopkins RO, NIH NHLBI ARDS Network: One year outcomes in patients with acute lung injury randomised to initial trophic or full enteral feeding: prospective follow-up of EDEN randomised trial. BMJ 346:f1532, 2013.

Gonzalez G, Davidoff AM, Howard SC, Pui CH, Rao BN, Shenep JL, Wozniak A, Shochat SJ: Safety of central venous catheter placement at diagnosis of acute lymphoblastic leukemia in children. Pediatr Blood Cancer 58(4):498-502, 2012.

Cheuk DK, Sabin ND, Hossain M, Wozniak A, Naik M, Rodriguez-Galindo C, Krasin MJ, Shulkin BL: PET/CT for staging and follow-up of pediatric nasopharyngeal carcinoma. European Journal of Nuclear Medicine & Molecular Imaging 39(7):1097-106, 2012.

Qaddoumi I, Bass JK, Wu J, Billups CA, Wozniak AW, Merchant TE, Haik BG, Wilson MW, Rodriguez-Galindo C: Carboplatin-associated ototoxicity in children with retinoblastoma. Journal of Clinical Oncology 30(10):1034-41, 2012.

Kolb EA, Gorlick R, Maris JM, Keir ST, Morton CL, Wu J, Wozniak AW, Smith MA, Houghton PJ: Combination testing (Stage 2) of the Anti-IGF-1 receptor antibody IMC-A12 with rapamycin by the pediatric preclinical testing program. Pediatric Blood & Cancer 58(5):729-35, 2012.

Lock RB, Carol H, Morton CL, Keir ST, Reynolds CP, Kang MH, Maris JM, Wozniak AW, Gorlick R, Kolb EA, Houghton PJ, Smith MA: Initial testing of the CENP-E inhibitor GSK923295A by the pediatric preclinical testing program. Pediatric Blood & Cancer 58(6):916-23, 2012.

Kang MH, Reynolds CP, Houghton PJ, Alexander D, Morton CL, Kolb EA, Gorlick R, Keir ST, Carol H, Lock R, Maris JM, Wozniak A, Smith MA: Initial testing (Stage 1) of AT13387, an HSP90 inhibitor, by the pediatric preclinical testing program. Pediatric Blood & Cancer 59(1):185-8, 2012.

McGregor LM, Stewart CF, Crews KR, Tagen M, Wozniak A, Wu J, McCarville MB, Navid F, Santana VM, Houghton PJ, Furman WL, Rodriguez-Galindo C: Dose escalation of intravenous irinotecan using oral cefpodoxime: a phase I study in pediatric patients with refractory solid tumors. Pediatric Blood & Cancer 58(3):372-9, 2012.

Houghton PJ, Lock R, Carol H, Morton CL, Phelps D, Gorlick R, Kolb EA, Keir ST, Reynolds CP, Kang MH, Maris JM, Wozniak AW, Gu Y, Wilson WR, Smith MA: Initial testing of the hypoxia-activated prodrug PR-104 by the pediatric preclinical testing program. Pediatric Blood & Cancer 57(3):443-53, 2011.

Houghton PJ, Morton CL, Gorlick R, Lock RB, Carol H, Reynolds CP, Kang MH, Maris JM, Keir ST, Kolb EA, Wu J, Wozniak AW, Billups CA, Rubinstein L, Smith MA: Stage 2 combination testing of rapamycin with cytotoxic agents by the Pediatric Preclinical Testing Program. Molecular Cancer Therapeutics 9(1):101-12, 2010.

Allen S, Wilson MW, Watkins A, Billups C, Qaddoumi I, Haik BH, Rodriguez-Galindo C: Comparison of two methods for carboplatin dosing in children with retinoblastoma. Pediatric Blood & Cancer 55(1):47-54, 2010.

Robbins JR, Krasin MJ, Pai Panandiker AS, Watkins A, Wu J, Santana VM, Furman WL, Davidoff AM, McGregor LM: Radiation therapy as part of local control of metastatic neuroblastoma: the St Jude Children's Research Hospital experience. Journal of Pediatric Surgery 45(4):678-86, 2010.

Carol H, Houghton PJ, Morton CL, Kolb EA, Gorlick R, Reynolds CP, Kang MH, Maris JM, Keir ST, Watkins A, Smith MA, Lock RB: Initial testing of topotecan by the pediatric preclinical testing program. Pediatric Blood & Cancer 54(5):707-15, 2010.

Smith MA, Morton CL, Kolb EA, Gorlick R, Keir ST, Carol H, Lock R, Kang MH, Reynolds CP, Maris JM, Watkins AE, Houghton PJ: Initial testing (stage 1) of mapatumumab (HGS-ETR1) by the pediatric preclinical testing program. Pediatric Blood & Cancer 54(2):307-10, 2010.

McGregor LM, Spunt SL, Santana VM, Stewart CF, Ward DA, Watkins A, Laningham FH, Ivy P, Furman WL, Fouladi M: Phase 1 study of an oxaliplatin and etoposide regimen in pediatric patients with recurrent solid tumors. Cancer 115(3):655-64, 2009.

 

 

 

Gayane Yenokyan  Description: C:\Users\margo\my_doc\My Web Sites\Publication\UP_AR~11.gif (go to top of document)

Tudor C, Van der Walt M, Margot B, Dorman SE, Pan WK, Yenokyan G, Farley JE: Tuberculosis among health care workers in KwaZulu-Natal, South Africa: a retrospective cohort analysis. BMC Public Health 14(1):891, 2014.

Okelo SO, Riekert KA, Eakin MN, Bilderback AL, Diette GB, Rand CS, Yenokyan G: Pediatrician qualifications and asthma management behaviors and their association with patient race/ethnicity. J Asthma 51(2):155-61, 2014.

Hummers LK, Dugowson CE, Dechow FJ, Wise RA, Gregory J, Michalek J, Yenokyan G, McGready J, Wigley FM: A multi-centre, blinded, randomised, placebo-controlled, laboratory-based study of MQX-503, a novel topical gel formulation of nitroglycerine, in patients with Raynaud phenomenon. Ann Rheum Dis 72(12):1962-7, 2013.

Walker N, Yenokyan G, Friberg IK, Bryce J: Patterns in coverage of maternal, newborn, and child health interventions: projections of neonatal and under-5 mortality to 2035. Lancet 382(9897):1029-38, 2013.

Bixenstine PJ, Zarbo RJ, Holzmueller CG, Yenokyan G, Robinson R, Hudson DW, Prescott AM, Hubble R, Murphy MM, George CT, D'Angelo R, Watson SR, Lubomski LH, Berenholtz SM: Developing and pilot testing practical measures of preanalytic surgical specimen identification defects. Am J Med Qual 28(4):308-14, 2013.

Martino T, Koerner C, Yenokyan G, Hoover-Fong J, Hamosh A: Maternal hyperphenylalaninemia: rapid achievement of metabolic control predicts overall control throughout pregnancy. Mol Genet Metab 109(1):3-8, 2013.

Gottfried RJ, Gerring JP, Machell K, Yenokyan G, Riddle MA: The iron status of children and youth in a community mental health clinic is lower than that of a national samp. J Child Adolesc Psychopharmacol 23(2):91-100, 2013.

Riddle MA, Yershova K, Lazzaretto D, Paykina N, Yenokyan G, Greenhill L, Abikoff H, Vitiello B, Wigal T, McCracken JT, Kollins SH, Murray DW, Wigal S, Kastelic E, McGough JJ, Dosreis S, Bauzo-Rosario A, Stehli A, Posner K: The Preschool Attention-Deficit/Hyperactivity Disorder Treatment Study (PATS) 6-year followup. J Am Acad Child Adolesc Psychiatry 52(3):264-278, 2013.

Loffroy R, Lin M, Yenokyan G, Rao PP, Bhagat N, Noordhoek N, Radaelli A, Blijd J, Liapi E, Geschwind JF: Intraprocedural C-arm dual-phase cone-beam CT: can it be used to predict short-term response to TACE with drug-eluting beads in patients with hepatocellular carcinoma? Radiology 266(2):636-48, 2013.

Malik MU, Diaz Voss Varela DA, Stewart CM, Laeeq K, Yenokyan G, Francis HW, Bhatti NI: Barriers to implementing the ACGME Outcome Project: a systematic review of program director surveys. J Grad Med Educ 4(4):425-433, 2012.

Schaeffer AJ, Yenokyan G, Alcorn K, Furth SL, Diener-West M, Wu AW, Gearhart JP, Dodson JL: Health related quality of life in adolescents with bladder exstrophy-epispadias as measured by the child health questionnaire-child form 87. J Urol 188(5):1924-9, 2012.

Vitiello B, Riddle MA, Yenokyan G, Axelson DA, Wagner KD, Joshi P, Walkup JT, Luby J, Birmaher B, Ryan ND, Emslie G, Robb A, Tillman R: Treatment moderators and predictors of outcome in the Treatment of Early Age Mania (TEAM) Study. Journal of the American Academy of Child & Adolescent Psychiatry 51(9):867-78, 2012.

Eze-Nliam C, Cain K, Bond K, Forlenza K, Jankowski R, Magyar-Russell G, Yenokyan G, Ziegelstein RC: Discrepancies between the medical record and the reports of patients with acute coronary syndrome regarding important aspects of the medical history. BMC Health Services Research 12:78, 2012.

Yenokyan G, Armenian HK: Triggers for attacks in familial Mediterranean fever: application of the case-crossover design. American Journal of Epidemiology 175(10):1054-61, 2012.

Joshi B, Ono M, Brown C, Brady K, Easley RB, Yenokyan G, Gottesman RF, Hogue CW: Predicting the limits of cerebral autoregulation during cardiopulmonary bypass. Anesthesia & Analgesia 114(3):503-10, 2012.

Miller MR, Niedner MF, Huskins WC, Colantuoni E, Yenokyan G, Moss M, Rice TB, Ridling D, Campbell D, Brilli RJ, National Association of Children's Hospitals and Related Institutions Pediatric Intensive Care Unit Central Line-Associated Bloodstream Infection Quality Transformation Teams: Reducing PICU central line-associated bloodstream infections: 3-year results. Pediatrics 128(5):e1077-83, 2011.

Dodson JL, Furth SL, Yenokyan G, Alcorn K, Diener-West M, Wu AW, Gearhart JP: Parent perspectives of health related quality of life for adolescents with bladder exstrophy-epispadias as measured by the child health questionnaire-parent form 50. Journal of Urology 184(4 Suppl):1656-61, 2010.

Gottlieb DJ, Yenokyan G, Newman AB, O'Connor GT, Punjabi NM, Quan SF, Redline S, Resnick HE, Tong EK, Diener-West M, Shahar E: Prospective study of obstructive sleep apnea and incident coronary heart disease and heart failure: the sleep heart health study. Circulation 122(4):352-60, 2010.

Redline S, Yenokyan G, Gottlieb DJ, Shahar E, O'Connor GT, Resnick HE, Diener-West M, Sanders MH, Wolf PA, Geraghty EM, Ali T, Lebowitz M, Punjabi NM: Obstructive sleep apnea-hypopnea and incident stroke: the sleep heart health study. American Journal of Respiratory and Critical Care Medicine 182(2):269-77, 2010.

Miller MR, Griswold M, Harris JM 2nd, Yenokyan G, Huskins WC, Moss M, Rice TB, Ridling D, Campbell D, Margolis P, Muething S, Brilli RJ: Decreasing PICU catheter-associated bloodstream infections: NACHRI's quality transformation efforts. Pediatrics 125(2):206-13, 2010.

Kharlip J, Salvatori R, Yenokyan G, Wand GS: Recurrence of hyperprolactinemia after withdrawal of long-term cabergoline therapy. Journal of Clinical Endocrinology and Metabolism 94(7):2428-36, 2009.

Rosenberg RE, Law JK, Yenokyan G, McGready J, Kaufmann WE, Law PA: Characteristics and concordance of autism spectrum disorders among 277 twin pairs. Archives of Pediatrics and Adolescent Medicine 163(10):907-14, 2009.

 

Scott Zeger Description: C:\Users\margo\my_doc\My Web Sites\Publication\UP_AR~11.gif(go to top of document)

Soneja S, Chen C, Tielsch JM, Katz J, Zeger SL, Checkley W, Curriero FC, Breysse PN: Humidity and gravimetric equivalency adjustments for nephelometer-based particulate matter measurements of emissions from solid biomass fuel use in cookstoves. Int J Environ Res Public Health 11(6):6400-16, 2014.

Murphy DJ, Needham DM, Netzer G, Zeger SL, Colantuoni E, Ness P, Pronovost PJ, Berenholtz SM: RBC transfusion practices among critically ill patients: has evidence changed practice? Crit Care Med 41(10):2344-2353, 2013.

Griswold ME, Swihart BJ, Caffo BS, Zeger SL: Practical marginalized multilevel models. Stat 2(1):129-142, 2013.

Ding R, Zeger SL, Steinwachs DM, Ortmann MJ, McCarthy ML: The validity of self-reported primary adherence among medicaid patients discharged from the emergency department with a prescription medication. Ann Emerg Med 62(3):225-34, 2013.

McCarthy ML, Ding R, Roderer NK, Steinwachs DM, Ortmann MJ, Pham JC, Bessman ES, Kelen GD, Atha W, Retezar R, Bessman SC, Zeger SL: Does providing prescription information or services improve medication adherence among patients discharged from the emergency department? A randomized controlled trial. Ann Emerg Med 62(3):212-223, 2013.

Levin SR, Harley ET, Fackler JC, Lehmann CU, Custer JW, France D, Zeger SL: Real-time forecasting of pediatric intensive care unit length of stay using computerized provider orders. Crit Care Med 40(11):3058-3064, 2012.

Zeger SL: Invited commentary: Epidemiologic studies of the health associations of environmental exposures with preterm birth. American Journal of Epidemiology 175(2):108-10, 2012.

Selnes OA, Gottesman RF, Grega MA, Baumgartner WA, Zeger SL, McKhann GM: Cognitive and neurologic outcomes after coronary-artery bypass surgery. New England Journal of Medicine 366(3):250-7, 2012.

McCarthy ML, Ding R, Pines JM, Terwiesch C, Sattarian M, Hilton JA, Lee J, Zeger SL: Provider variation in fast track treatment time. Medical Care 50(1):43-49, 2012.

McCarthy ML, Ding R, Pines JM, Zeger SL: Comparison of methods for measuring crowding and its effects on length of stay in the emergency department. Academic Emergency Medicine 18(12):1269-77, 2011.

McCarthy ML, Ding R, Zeger SL, Agada NO, Bessman SC, Chiang W, Kelen GD, Scheulen JJ, Bessman ES: A randomized controlled trial of the effect of service delivery information on patient satisfaction in an emergency department fast track. Academic Emergency Medicine 18(7):674-85, 2011.

Retezar R, Bessman E, Ding R, Zeger SL, McCarthy ML: The effect of triage diagnostic standing orders on emergency department treatment time. Annals of Emergency Medicine 57(2):89-99, 2011.

Gottesman RF, Grega MA, Bailey MM, Zeger SL, Baumgartner WA, McKhann GM, Selnes OA: Association between hypotension, low ejection fraction and cognitive performance in cardiac patients. Behavioural Neurology 22(1-2):63-71, 2009-2010.

Janes H, Dominici F, Zeger S: On quantifying the magnitude of confounding. Biostatistics 11(3):572-82, 2010.

Ding R, McCarthy ML, Desmond JS, Lee JS, Aronsky D, Zeger SL: Characterizing waiting room time, treatment time, and boarding time in the emergency department using quantile regression. Academic Emergency Medicine 17(8):813-823, 2010.

Diggle PJ, Zeger SL: Embracing the concept of reproducible research. Biostatistics 11(3):375, 2010.

Fan E, Ciesla ND, Truong AD, Bhoopathi V, Zeger SL, Needham DM: Inter-rater reliability of manual muscle strength testing in ICU survivors and simulated patients. Intensive Care Medicine 36(6):1038-43, 2010.

Gottesman RF, Grega MA, Bailey MM, Pham LD, Zeger SL, Baumgartner WA, Selnes OA, McKhann GM: Delirium after coronary artery bypass graft surgery and late mortality. Annals of Neurology 67(3):338-44, 2010.

Koenig MA, Grega MA, Bailey MM, Pham LD, Zeger SL, Baumgartner WA, McKhann GM: Statin use and neurologic morbidity after coronary artery bypass grafting: A cohort study. Neurology 73(24):2099-106, 2009.

Massie AB, Zeger SL, Montgomery RA, Segev DL: The effects of DonorNet 2007 on kidney distribution equity and efficiency. American Journal of Transplantation 9(7):1550-7, 2009.

McCarthy ML, Zeger SL, Ding R, Levin SR, Desmond JS, Lee J, Aronsky D: Crowding delays treatment and lengthens emergency department length of stay, even among high-acuity patients. Annals of Emergency Medicine 54(4):492-503, 2009.

Carey JL, Dunn WR, Dahm DL, Zeger SL, Spindler KP: A systematic review of anterior cruciate ligament reconstruction with autograft compared with allograft. Journal of Bone and Joint Surgery 91(9):2242-50, 2009.

Selnes OA, Grega MA, Bailey MM, Pham LD, Zeger SL, Baumgartner WA, McKhann GM: Do management strategies for coronary artery disease influence 6-year cognitive outcomes? Annals of Thoracic Surgery 88(2):445-454, 2009.

Peng RD, Bell ML, Geyh AS, McDermott A, Zeger SL, Samet JM, Dominici F: Emergency admissions for cardiovascular and respiratory diseases and the chemical composition of fine particle air pollution. Environmental Health Perspectives 117(6):957-63, 2009.

Welty LJ, Peng RD, Zeger SL, Dominici F: Bayesian distributed lag models: estimating effects of particulate matter air pollution on daily mortality. Biometrics 65(1):282-91, 2009.

Dariotis JK, Sonenstein FL, Gates GJ, Capps R, Astone NM, Pleck JH, Sifakis F, Zeger S: Changes in sexual risk behavior as young men transition to adulthood. Perspectives on Sexual and Reproductive Health 40(4):218-25, 2008.

McKhann GM, Selnes OA, Grega MA, Bailey MM, Pham LD, Baumgartner WA, Zeger SL: Subjective memory symptoms in surgical and nonsurgical coronary artery patients: 6-year follow-up. Annals of Thoracic Surgery 87(1):27-34, 2009.

Louis TA, Zeger SL: Effective communication of standard errors and confidence intervals. Biostatistics 10(1):1-2, 2009.

 

Vadim Zipunnikov  Description: C:\Users\margo\my_doc\My Web Sites\Publication\UP_AR~11.gif (go to top of document)

He B, Bai J, Zipunnikov VV, Koster A, Caserotti P, Lange-Maia B, Glynn NW, Harris TB, Crainiceanu CM: Predicting human movement with multiple accelerometers using movelets. Med Sci Sports Exerc 46(9):1859-66, 2014.

Schrack JA, Zipunnikov V, Goldsmith J, Bai J, Simonsick EM, Crainiceanu C, Ferrucci L: Assessing the "physical cliff": detailed quantification of age-related differences in daily patterns of physical activity. J Gerontol A Biol Sci Med Sci 69(8):973-9, 2014.

Schrack JA, Zipunnikov V, Goldsmith J, Bandeen-Roche K, Crainiceanu CM, Ferrucci L: Estimating energy expenditure from heart rate in older adults: a case for calibration. PLoS One 9(4):e93520, 2014.

Ling Z, Liu Z, Su L, Zipunnikov V, Wu J, Du H, Woo K, Chen S, Zhong B, Lan X, Fan J, Xu Y, Chen W, Yin Y, Nazarian S, Zrenner B: Radiofrequency ablation versus antiarrhythmic medication for treatment of ventricular premature beats from the right ventricular outflow tract: prospective randomized study. Circ Arrhythm Electrophysiol 7(2):237-43, 2014.

Mints Y, Zipunnikov V, Khurram I, Calkins H, Nazarian S: Single nucleotide polymorphisms in proximity to K-channel genes are associated with decreased longitudinal QTc variance. Ann Noninvasive Electrocardiol 19(1):63-9, 2014.

Bai J, He B, Shou H, Zipunnikov V, Glass TA, Crainiceanu CM: Normalization and extraction of interpretable metrics from raw accelerometry data. Biostatistics 15(1):102-16, 2014.

Khurram IM, Beinart R, Zipunnikov V, Dewire J, Yarmohammadi H, Sasaki T, Spragg DD, Marine JE, Berger RD, Halperin HR, Calkins H, Zimmerman SL, Nazarian S: Magnetic resonance image intensity ratio, a normalized measure to enable interpatient comparability of left atrial fibrosis. Heart Rhythm 11(1):85-92, 2014.

Shou H, Eloyan A, Lee S, Zipunnikov V, Crainiceanu AN, Nebel MB, Caffo B, Lindquist MA, Crainiceanu CM: Quantifying the reliability of image replication studies: The image intraclass correlation coefficient (I2C2). Cogn Affect Behav Neurosci 13(4):714-724, 2013.

Sasaki T, Miller CF, Hansford R, Zipunnikov V, Zviman MM, Marine JE, Spragg D, Cheng A, Tandri H, Sinha S, Kolandaivelu A, Zimmerman SL, Bluemke DA, Tomaselli GF, Berger RD, Halperin HR, Calkins H, Nazarian S: Impact of nonischemic scar features on local ventricular electrograms and scar-related ventricular tachycardia circuits in patients with nonischemic cardiomyopathy. Circ Arrhythm Electrophysiol 6(6):1139-47, 2013.

Khurram IM, Dewire J, Mager M, Maqbool F, Zimmerman SL, Zipunnikov V, Beinart R, E Marine J, Spragg DD, Berger RD, Ashikaga H, Nazarian S, Calkins H: Relationship between left atrial appendage morphology and stroke in patients with atrial fibrillation. Heart Rhythm 10(12):1843-9, 2013.

Zipunnikov V, Caffo B, Yousem DM, Davatzikos C, Schwartz BS, Crainiceanu C: Multilevel functional principal component analysis for high-dimensional data. Journal of Computational and Graphical Statistics 20(4):852-873, 2011.

Crainiceanu CM, Caffo BS, Luo S, Zipunnikov V, Punjabi NM: Population value decomposition, a framework for the analysis of image populations. Journal of the American Statistical Association 106(495): 775-790, 2011.

Zipunnikov V, Caffo B, Yousem DM, Davatzikos C, Schwartz BS, Crainiceanu C: Functional principal component model for high-dimensional brain imaging. Neuroimage 58(3):772-84, 2011.

Zipunnikov V, Booth JS, Yoshida R: Counting tables using the double saddlepoint approximation. Journal of Computational and Graphical Statistics 18(4):915-929, 2009.

 

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