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Welcome to CisGenome!
(An integrated tool for tiling array, ChIP-seq, genome and cis-regulatory element analysis) |
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Mirror Sites: CisGenome @ Hopkins: http://www.biostat.jhsph.edu/~hji/cisgenome/ CisGenome @ Stanford: http://biogibbs.stanford.edu/~jihk/CisGenome/index.htm
News: 4/22/2009: file_eland2aln has been updated to support new ELAND format -> ALN conversion. A tool for BED->ALN conversion (file_bed2aln) has been added. 4/22/2009: Support to Chicken and C. elegans genomes have been added. 2/20/2009: A number of users reported that the sorting function in GUI “ Sequencing > Alignment ->BAR” (tablesorter_str in Unix) often cannot run through due to insufficient memory. The function is updated now, and the new version is more memory efficient. It requires about 700Mb memory for the STAT1 test data posted on our website. 12/10/2008: Arabidopsis database has been upgraded to TAIR8. Some bugs are fixed. 11/02/2008: The paper describing CisGenome is published by Nature Biotechnology today. If you need to cite CisGenome in your own work, please refer to this paper [Link]. 11/02/2008: User manual page has been updated. Several commonly used analysis pipelines are listed for users who wish to run CisGenome as command line programs. |
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Copyright, 2007 – 08, The Johns Hopkins University. All Rights reserved.
Permission granted to download and use CisGenome for non-commercial research use only. No further distribution or copying for commercial use permitted without express written consent. Contact Hongkai Ji, Ph.D., Assistant Professor, Email: hji@jhsph.edu. |
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The three core components of CisGenome |
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What can I do with CisGenome? |
