Publications

Papers:

Marcus Munafò, Simon Noble, William Browne, Dani Brunner, Katherine Button, Joaquim Ferreira, Peter Holmans, Douglas Langbehn, Glyn Lewis, Martin Lindquist, Kate Tilling, Eric-Jan Wagenmakers and Robi Blumenstein (2014). “Scientific rigor and the art of motorcycle maintenance”, Nature Biotechnology, in press.

Martin Lindquist, Yuting Xu, Mary Beth Nebel, and Brain Caffo (2014).“Evaluating dynamic bivariate correlations in resting-state fMRI: A comparison study and a new approach”, NeuroImage, in press.

Haochang Shou, Ani Eloyan, Mary Beth Nebel, Amanda Mejia, James J Pekar, Stewart Mostofsky, Brian Caffo, Martin Lindquist, and Ciprian M Crainiceanu (2014). “Shrinkage Prediction of Seed-voxel Brain Connectivity using Resting-state fMRI”, NeuroImage, in press.

Lauren Atlas, Martin Lindquist, Niall Bolger, and Tor Wager (2014). “Brain mediators of the effects of noxious heat on pain”, Pain, 155:1632-1648.

Michael Sobel and Martin Lindquist (2014). “Causal Inference for fMRI Time Series Data with Systematic Errors of Measurement in a Balanced On/Off Study of Social Evaluative Threat”, Journal of the American Statistical Association, in press.

David Degras and Martin Lindquist (2014). “A Hierarchical Model for Simultaneous Detection and Estimation in Multi-subject fMRI Studies”, NeuroImage, 98:61-72.

Ivor Cribben, Tor Wager, and Martin Lindquist (2013). “Detecting functional connectivity change points for single-subject fMRI data”, Frontiers in Computational Neuroscience, 7.

Haochang Shou, Ani Eloyan, Seonjoo Lee, Vadim Zipunnikov, Adina Crainiceanu, Mary Beth Nebel, Brian Caffo, Martin Lindquist, and Ciprian Crainiceanu (2013). “Quantifying the reliability of image replication studies: the image intra-class correlation coefficient (I2C2)”, Cognitive, Affective, and Behavioral Neuroscience, DOI 10.3758/s13415-013-0196-0.

Richard Leigh, Kenichi Oishi, John Hsu, Martin Lindquist, Rebecca Gottesman, Samson Jarso, Ciprian Crainiceanu, Susumu Mori, and Argye E. Hillis (2013). Acute Lesions that Impair Emotional Empathy. Brain, in press.

Martin Lindquist, Brian Caffo, and Ciprian Crainiceanu (2013). Ironing out the statistical wrinkles in ‘Ten Ironic Rules’. NeuroImage, in press.

Tor Wager, Lauren Atlas, Martin Lindquist, Mathieu Roy, Choong-Wan Woo and Ethan Kross (2013). An fMRI-based Neurologic Signature of Physical Pain. New England Journal of Medicine, 368:1388-1397.

Martin Lindquist (2012). Functional Causal Mediation Analysis with an application to Brain Connectivity. Journal of the American Statistical Association, 107, 1297-1309.

Lauren Atlas, Robert Whittington, Martin Lindquist, Joe Wielgosz, Nomita Sonty, and Tor Wager (2012). The role of expectancy during opioid analgesia: Dissociable influences of drugs and expectations on brain and behavior. Journal of Neuroscience, 32, 8053-64.

Ivor Cribben, Ragnheidur Haraldsdottir, Lauren Atlas, Tor Wager and Martin Lindquist (2012). Dynamic connectivity regression: Determining state-related changes in brain connectivity. NeuroImage, 61, 907-920.

Martin Lindquist and Michael Sobel (2012). Cloak and DAG: A Response to the Comments on our Comment. NeuroImage, 76, 466-449.

Yu Yue, Martin Lindquist and Ji Meng Loh (2012). Bayesian nonparametric binary regression: application to meta-analysis of functional neuroimaging data. Annals of Applied Statistics, 6, 679-718.

Martin Lindquist, Julie Spicer, Iris Asllani and Tor Wager (2012). Estimating and testing variance components in a multi-level GLM. NeuroImage, 59, 490-501.

Rohini Rao, Nina Jonsson, Camila Ventura, Rony Gelman, Martin Lindquist, Daniel Casper and Michael F. Chiang (2012). Plus disease in retinopathy of prematurity: diagnostic impact of field of view. RETINA, in press.

Martin Lindquist and Michael Sobel (2011). Graphical models, potential outcomes and causal inference: Comment on Ramsey, Spirtes and Glymour. NeuroImage, 57, 334-336.

Lauren Atlas, Niall Bolger, Martin Lindquist, and Tor Wager (2010). Multiple brain pathways mediate expectancy effects on pain. Journal of Neuroscience, 30, 12964-12977.

Nikolaus Kriegeskorte, Martin Lindquist, Thomas Nichols, Russel Poldrack and Edward Vul (2010). Everything you never wanted to know about circular analysis - but were afraid to ask. Journal of Cerebral Blood Flow & Metabolism, 30, 1551-1557. Article

Martin Lindquist (2010). The Benefits of Rapid fMRI. International Journal of Imaging Systems and Technology, 20, 14-22.

Yu Yue, Ji Meng Loh and Martin Lindquist (2010). Adaptive spatial smoothing of fMRI images. Statistics and Its Interface, 3, 3-13.

Lucy Robinson, Tor Wager, and Martin Lindquist (2010). Change point estimation in multi-subject fMRI studies. NeuroImage, 49, 1581-1592. Article

Martin Lindquist and Ian McKeague (2009). Logistic Regression with Brownian-like Predictors. Journal of the American Statistical Association, 104, 1575-1585. Article

William Ottowitz, Thilo Deckersbach, Cary Savage, Martin Lindquist, Darin Dougherty (2009). Neural correlates of strategic processes underlying episodic memory in women with major depression: an 15O-PET study. Journal of Neuropsychiatry and Clinical Neurosciences, 2, 218-230.

Tor Wager, Christian Waugh, Martin Lindquist, Doug Noll, Barb Fredrickson and Steve Taylor (2009). Brain mediators of cardiovascular responses to social threat, Part I: Reciprocal dorsal and ventral sub-regions of the medial prefrontal cortex and heart-rate reactivity. NeuroImage, 47, 821-835. Article

Tor Wager, Vanessa van Ast, Brent Hughes, Matthew Davidson, Martin Lindquist and Kevin Ochsner (2009). Brain mediators of cardiovascular responses to social threat, Part II: Prefrontal subcortical pathways and relationship with anxiety. NeuroImage, 47, 836-851. Article

Martin Lindquist and Andrew Gelman (2009). Correlations and Multiple Comparisons in Functional Imaging: A Statistical Perspective (Commentary on Vul et al., 2009). Perspectives on Psychological Science, 4, 310-313. Article

Martin Lindquist (2008). The Statistical Analysis of fMRI Data. Statistical Science, 23(4), 439-464. Article

Martin Lindquist, Ji Meng Loh, Lauren Atlas, and Tor Wager (2008). Modeling the Hemodynamic Response Function in fMRI: Efficiency, Bias and Mis-modeling. NeuroImage, 45, S187-S198. Article

Tor Wager, Martin Lindquist, Thomas Nichols, Hedy Kober and Jared Van Snellenberg (2008). Evaluating the consistency and specificity of neuroimaging data using meta-analysis. NeuroImage, 45, S210-S221. Article

William Ottowitz, Karen Siedlecki, Martin Lindquist, Darin Dougherty, Alan Fischman and Janet Hall (2008). Evaluation of prefrontal.hippocampal effective connectivity following 24 hours of estrogen infusion: An FDG-PET study. Psychoneuroendocrinology, 1419-1425.

Tor Wager, Matthew Davidson, Brent Hughes, Martin Lindquist and Kevin Ochsner (2008). Prefrontal-subcortical pathways mediating successful emotion regulation. Neuron, 59, 1037-1050. Article, Supplemental Material, Commentary

Jack Grinband, Tor Wager, Martin Lindquist, Vincent Ferrera and Joy Hirsch (2008). Detection of time-varying signals in event-related fMRI designs. NeuroImage, 43, 509-520.

William Ottowitz, David Derro, Darin Dougherty, Martin Lindquist, Alan Fischman and Janet Hall (2008). FDG-PET analysis of amygdalar-cortical network covariance during pre- versus post-menopausal estrogen levels: Potential relevance to resting state networks, mood, and cognition. Neuroendocrinology Letters, 29(4):101.000.

Cun-Hui Zhang, Martin Lindquist, Z.H. Cho, Gary Glover and Lawrence Shepp (2008). Fast Functional Magntic Resonance Imaging - A New Approach Towards Neuroimaging. Statistics and Its Interface, 1, 13-22 .

Martin Lindquist, Cun-Hui Zhang, Gary Glover and Lawrence Shepp (2008). Acquisition and Statistical Analysis of Rapid 3D fMRI data. Statistica Sinica, 18(2008), 1395-1419. Article

Tor Wager, Luis Hernandez and Martin Lindquist (2008). Essentials of Functional Neuroimaging. In John Cacioppo and Gary Berntson (Eds), The Handbook of Neuroscience for the Behavioral Sciences. John Wiley and Sons.

Ji-Meng Loh, Martin Lindquist and Tor Wager (2008). Residual Analysis for Detecting Mis-modeling in fMRI. Statistica Sinica, 18, 1421-1448. Article

Martin Lindquist, Cun-Hui Zhang, Gary Glover and Lawrence Shepp (2008). Rapid Three-Dimensional Functional Magnetic Resonance Imaging of the Negative BOLD Response. Journal of Magnetic Resonance, 191, 100-111. Article

Martin Lindquist and Tor Wager (2008). Spatial Smoothing in fMRI using Prolate Spheroidal Wave Functions. Human Brain mapping, 29(11), 1276-1287. Article

Tor Wager, Martin Lindquist and Lauren Kaplan (2007). Meta-analysis of functional neuroimaging data: Current and future directions. Social Cognitive and Affective Neuroscience 2: 150-158. Article

Martin Lindquist, Christian Waugh and Tor Wager (2007). Modeling state-related fMRI activity using change-point theory. NeuroImage, 35, 1125-1141. Article

Tor Wager, Luis Hernandez, John Jonides and Martin Lindquist (2007). Elements of Functional Neuroimaging. In John Cacioppo, Louis Tassinary and Gary Berntson (Eds), The Handook of Psychophysiology, 3rd Edition. Cambridge University Press.

Martin Lindquist and Tor Wager (2006). Validity and Power in Hemodynamic Response Modeling: A comparison study and a new approach. Human Brain Mapping, 28(8) 764-784. Article

Martin Lindquist, Cun-Hui Zhang, Gary Glover, Lawrence Shepp and Qing Yang (2006). A Generalization of the Two Dimensional Prolate Spheroidal Wave Function Method for Non-Rectilinear MRI Data Acquisition Methods. IEEE Transactions in Image Processing, 15(9), 2792-2804. Article

Martin Lindquist and Tor Wager (2005). Application of change-point theory to modeling state-related activity in fMRI. In Pat Cohen (Ed), Applied Data Analytic Techniques for "Turning Points Research. Mahwah, NJ : Lawrence Erlbaum Associates Publishers.

Martin Lindquist (2003). Optimal Data Acquisition in fMRI Using Prolate Spheroidal Wave Functions. International Journal of Imaging Systems and Technology, 13, 803-812.

Essa Yacoub, Timothy Duong, Pierre-Francoise Van De Moortele, Martin Lindquist, Gregor Adriany, Seong-Gi Kim, Xiaoping Hu and Kamil Ugurbil (2003). Spin Echo fMRI in Humans Using High Spatial Resolutions and High Magnetic Fields. Magnetic Resonance in Medicine 49, 655-664.

Qing Yang, Martin Lindquist, Lawrence Shepp, Cun-Hui Zhang, Jianli Wang and Michael Smith (2002). The Two Dimensional Prolate Spheroidal Wave Function for MRI. Journal of Magnetic Resonance, 158, 43-51.

Martin Lindquist (2001). Fast Functional MRI using Two-Dimensional Prolate Spheroidal Wave Functions. ProQuest Information and Learning Company. Ann Arbor, MI.

Technical Reports:

Martin Lindquist. A Note on Spatial Smoothing and Minimum K-space Sampling Requirements in fMRI, Technical Report, 2004.

L.A. Shepp, C.H. Zhang and M.A. Lindquist. Simple Ball-of-Yarn Spiral Sampling in 3-Dimensional K-Space, Technical Report, 2004.

Martin Lindquist. Reconstruction of MR images using Non-uniformly Sampled Data and the Prolate Spheroidal Wave Function, Technical Report, 2004.

Martin Lindquist. Non-Homogeneous Type II Counter Models for Neurotransmitter Releases. Master's Thesis January 1997.

Peer-Reviewed Conference Papers:

Lauren Atlas, Robert Whittington, Martin Lindquist, Nomita Sonty and Tor Wager. Hidden vs open opioid administration: Belief modulates remifentanil effects on pain-evoked responses. Human Brain Mapping Annual Meeting, 2010.

Wesley Thompson, Martin Lindquit, Greg Brown and FBIRN. Functional ANOVA for fMRI, with application to the fBIRN East Coast Traveling Subjects Study. Human Brain Mapping Annual Meeting, 2010.

William Ottowitz, Martin Lindquist, Michael Gregory, Erika Nixon and Curt LaFrance. fMRI Evaluation of Oral Administration of a High Stress Dose of Hydrocortisone. Human Brain Mapping Annual Meeting, 2010.

Julie Spicer, Lauren Leotti, Iris Asllani, Ajna Borogovac, Martin Lindquist, Ed Smith and Tor Wager. Individual differences in brain mechanisms of social evaluative threat. Neuroscience, 2009.

Martin Lindquist, Ragnheidur Haraldsdottir, Lauren Atlas and Tor Wager. Modeling Brain Pathways using Functional Mediation Analysis. Human Brain Mapping Annual Meeting, 2009.

Martin Lindquist, Julie Spicer, Lauren Leotti, Iris Asllani, and Tor Wager. Localizing areas with significant inter-individual variation: Testing Variance Components in a Multi-level GLM. Human Brain Mapping Annual Meeting, 2009.

Lucy Robinson, Tor Wager, Lauren Atlas, and Martin Lindquist. Spatial Clustering of Response Curves. Human Brain Mapping Annual Meeting, 2009.

Lauren Atlas, Niall Bolger, Martin Lindquist and Tor Wager. Multiple Brain Pathways Mediate Expectancy Effects on Pain. Human Brain Mapping Annual Meeting, 2009.

Julie Spicer, Lauren Leotti, Iris Asllani, Ajna Borogovac, Martin Lindquist and Tor Wager. Using Perfusion fMRI to Identify Brain Mechanisms of Social Evaluative Threat. Human Brain Mapping Annual Meeting, 2009.

Lauren Atlas, Niall Bolger, Martin Lindquist and Tor Wager. Multiple mediators of expectancy effects on pain perception: Interactions among higher-order brain regions and the pain matrix. Cognitive Neuroscience Society, 2009.

Lauren Atlas, Niall Bolger, Martin Lindquist and Tor Wager. Neural mechanisms of expectancy-based pain modulation: Whole brain mediation analysis using fMRI. Neuroscience, 2008.

Lucy Robinson, Tor Wager, and Martin Lindquist. Estimating Distributions of Onset Times and Durations from Multi-subject fMRI Studies. Human Brain Mapping Annual Meeting, 2008.

Tor Wager, Lauren Atlas, Martin Lindquist, Kate Hard, Matthew Davidson. Functional Pathway Discovery using Mediation Analysis: Approach and Application to Pain. Human Brain Mapping Annual Meeting, 2008.

Lauren Atlas, Matthew Davidson, Kate Dahl, Martin Lindquist and Tor Wager. Tracing pain pathways from stimulus to report. Cognitive Neuroscience Society, 2008.

Matthew Davidson, Lauren Atlas, Martin Lindquist, Niall Bolger and Tor Wager. The Multilevel Mediation/Moderation (M3) Framework: A Strategy for Pathway Analysis from fMRI Data. Cognitive Neuroscience Society, 2008.

Ji-Meng Loh, Tor D. Wager, and Martin A. Lindquist. Detecting Model Mis-specification in fMRI using Scan Statistics. Human Brain Mapping Annual Meeting, 2007.

Martin Lindquist, Cun-Hui Zhang, Gary Glover and Lawrence Shepp. Rapid 3D fMRI of the Hemodynamic Response Function. Human Brain Mapping Annual Meeting, 2007.

Martin Lindquist, Cun-Hui Zhang, Gary Glover and Lawrence Shepp. Rapid 3D fMRI using an Echo-Volumar Imaging Trajectory. Proceedings of the 15th ISMRM Annual Meeting, Berlin, 2007.

William Ottowitz, Darin Dougherty, Martin Lindquist, Alan Fischman, Janet Hall. Cortisol Levels Covary with Anterior Cingulate Cortex rCMR During High Dose Estrogen: A PET Study. Journal of Neuropsychiatry and Clinical Neurosciences, Spring 2007.

Martin Lindquist and Tor Wager. Spatial Smoothing in fMRI using Prolate Spheroidal Wave Functions. Human Brain Mapping Annual Meeting, 2006.

Martin Lindquist and Tor Wager. A novel approach to modeling state-related fMRI activity using change-point theory. Human Brain Mapping Annual Meeting, 2006.

Tor Wager, Christian Waugh, Martin Lindquist, Barbara Fredrickson, Douglas Noll, Stephen Taylor. The role of ventromedial prefrontal cortex in anxiety and emotional resilience. Human Brain Mapping Annual Meeting, 2006.

Jack Grinband, Tor Wager, Martin Lindquist, Vince Ferrera and Joy Hirsch. Modeling reaction times in event-related fMRI designs. Human Brain Mapping Annual Meeting, 2006.

William Ottowitz, Martin Lindquist, David Derro, Darin Dougherty, Alan Fischman and Janet Hall. Lateralization of Amygdalar-Hippoccampal Connectivity During Estrogen Infusion: Relevance to the Depressive Disorders. Human Brain Mapping Annual Meeting, 2006.

William Ottowitz, Martin Lindquist, David Derro, Darin Dougherty, Alan Fischman and Janet Hall. Correlation of Suprhypothalamic Neural Network Activity with the Hypothalamus During Estrogen Infusion in Women: A PET Study Employing Path Analysis in Evaluation of the HPO Axis. Endo 2006.

Martin Lindquist and Tor Wager. Modeling the Hemodynamic Response Function using Inverse Logit Functions. Human Brain Mapping Annual Meeting, 2005.

Martin Lindquist, Cun-Hui Zhang, Gary Glover, Lawrence Shepp and Qing Yang. The Generalized 2D-PSWF Method for Tracking Dynamic Signal with High Temporal Resolution. Proceedings of the 13th ISMRM Annual Meeting,. Miami, 2005.

Martin Lindquist. Fast Functional Magnetic Resonance Imaging. Proceedings of SPIE Vol. 4478, p. 163-171, December 2001.

M. Lindquist, Q. X. Yang, C. H. Zhang, R. J. Demeure, M. B. Smith, and L. Shepp, ROI Tailored k-Space Sampling and a 2D Prolate Spheroidal Wave Function Filter: Reduction of Spectral Contamination in Spectroscopic Imaging. Proceedings of the 8th ISMRM Annual Meeting, Denver, p. 1842, 2000.